Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: pysradb
https://packages.ecosyste.ms/registries/pypi.org/packages/pysradb
A Python package for interacting with SRAdb and downloading datasets from SRA/ENA/GEO
38 versions
Latest release: about 1 year ago
4 dependent packages
2,961 downloads last month
Papers Mentioning pysradb 4
10.1186/s12864-021-07381-z
Multiple freeze-thaw cycles lead to a loss of consistency in poly(A)-enriched RNA sequencingCited by: 11
Author(s): Benjamin P. Kellman, Hratch Baghdassarian, Tiziano Pramparo, Isaac Shamie, Vahid H. Gazestani, Arjana Begzati, Shangzhong Li, Srinivasa Nalabolu, Sarah Murray, Linda Lopez, Karen Pierce, Eric Courchesne, Nathan E. Lewis
Software Mentions: 11
Published: almost 4 years ago
10.12688/f1000research.18676.1
pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read ArchiveCited by: 23
Author(s): Saket Choudhary
Software Mentions: 4
Published: over 5 years ago
10.1136/rmdopen-2020-001324
Current status of use of high throughput nucleotide sequencing in rheumatologyCited by: 2
Author(s): Sebastian Boegel, John C. Castle, Andreas Schwarting
Software Mentions: 4
Published: almost 4 years ago
10.3390/biomedicines9050582
Multi-Omic Meta-Analysis of Transcriptomes and the Bibliome Uncovers Novel Hypoxia-Inducible GenesCited by: 19
Author(s): Yoko Ono, Hidemasa Bono
Software Mentions: 1
Published: over 3 years ago