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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: pypi: pysradb

https://packages.ecosyste.ms/registries/pypi.org/packages/pysradb

A Python package for interacting with SRAdb and downloading datasets from SRA/ENA/GEO
38 versions
Latest release: almost 2 years ago
4 dependent packages
2,961 downloads last month

Enhanced Analysis
Educational Contributors: [email protected]
Repository Activity:
Repository Owner: Saket Choudhary (user)
README Analysis: DOI Found CITATION.cff
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +20 Educational commit emails
    1 contributors with educational email addresses
  • +8 Science terms in README
    4 scientific terms found in README
  • +30 DOI references
    3 DOI references found in README
  • +15 CITATION.cff file
    Contains citation file for academic attribution
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -10 No science terms in description
    No scientific terms found in description
Very Likely Science (100)

Papers Mentioning pysradb 4

10.1186/s12864-021-07381-z
Multiple freeze-thaw cycles lead to a loss of consistency in poly(A)-enriched RNA sequencing
Cited by: 11
Author(s): Benjamin P. Kellman, Hratch Baghdassarian, Tiziano Pramparo, Isaac Shamie, Vahid H. Gazestani, Arjana Begzati, Shangzhong Li, Srinivasa Nalabolu, Sarah Murray, Linda Lopez, Karen Pierce, Eric Courchesne, Nathan E. Lewis
Software Mentions: 11
Published: over 4 years ago
10.12688/f1000research.18676.1
pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive
Cited by: 23
Author(s): Saket Choudhary
Software Mentions: 4
Published: over 6 years ago
10.1136/rmdopen-2020-001324
Current status of use of high throughput nucleotide sequencing in rheumatology
Cited by: 2
Author(s): Sebastian Boegel, John C. Castle, Andreas Schwarting
Software Mentions: 4
Published: over 4 years ago
10.3390/biomedicines9050582
Multi-Omic Meta-Analysis of Transcriptomes and the Bibliome Uncovers Novel Hypoxia-Inducible Genes
Cited by: 19
Author(s): Yoko Ono, Hidemasa Bono
Software Mentions: 1
Published: about 4 years ago