Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: pycoQC

https://packages.ecosyste.ms/registries/pypi.org/packages/pycoQC

PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
50 versions
Latest release: almost 4 years ago
251 downloads last month

Papers Mentioning pycoQC 9

NanoPack: visualizing and processing long-read sequencing data
Cited by: 1,423
Author(s): Wouter De Coster, Svenn D’Hert, Darrin T. Schultz, Marc Cruts, Christine Van Broeckhoven
Software Mentions: 18
Published: over 6 years ago

10.3389/fgene.2021.711437

poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore Sequencing
Cited by: 23
Author(s): Christian Brandt, Sebastian Krautwurst, Riccardo Spott, Mara Lohde, Mateusz Jundzill, Mike Marquet, Martin Hölzer
Software Mentions: 5
Published: over 3 years ago

10.1186/s12859-021-04161-0

BoardION: real-time monitoring of Oxford Nanopore sequencing instruments
Cited by: 4
Author(s): Aimeric Bruno, Jean‐Marc Aury, Stéfan Engelen
Software Mentions: 5
Published: over 3 years ago

10.1038/s41597-021-01017-3

Chromosome-scale genome sequencing, assembly and annotation of six genomes from subfamily Leishmaniinae
Cited by: 5
Author(s): Hatim Almutairi, Michael D. Urbaniak, Michelle Bates, Narissara Jariyapan, Godwin Kwakye-Nuako, Vanete Thomaz Soccol, Waleed S. Al-Salem, Rod J. Dillon, Paul A. Bates, Derek Gatherer
Software Mentions: 4
Published: about 3 years ago

10.3390/ijms22042060

Long-Read Sequencing Improves the Detection of Structural Variations Impacting Complex Non-Coding Elements of the Genome
Cited by: 13
Author(s): Ghausia Begum, Ammar Albanna, Asma Bankapur, Nasna Nassir, Richa Tambi, Bakhrom K. Berdiev, Hosneara Akter, Noushad Karuvantevida, Barbara Kellam, Deena Alhashmi, Wilson W L Sung, Bhooma Thiruvahindrapuram, Alawi A. Alsheikh‐Ali, Stephen W. Scherer, Mohammed Uddin
Software Mentions: 3
Published: over 3 years ago

10.1016/j.isci.2020.101223

Implications of Error-Prone Long-Read Whole-Genome Shotgun Sequencing on Characterizing Reference Microbiomes
Cited by: 8
Author(s): Yu Hu, Fang Li, Christopher Nicholson, Kai Wang
Software Mentions: 1
Published: over 4 years ago

10.1128/MRA.00591-21

Chromosome-Scale Assembly of the Complete Genome Sequence of Leishmania ( Mundinia ) sp. Ghana, Isolate GH5, Strain LV757
Cited by: 0
Author(s): Hatim Almutairi, Michael D. Urbaniak, Michelle Bates, Godwin Kwakye-Nuako, Waleed S. Al-Salem, Rod J. Dillon, Paul A. Bates, Derek Gatherer
Software Mentions: 1
Published: about 3 years ago

10.1128/MRA.00452-20

Complete Genome Sequence of Clostridium innocuum Strain ATCC 14501
Cited by: 9
Author(s): Kathryn E. Cherny, Egon A. Ozer, Travis J. Kochan, Larry K. Kociolek
Software Mentions: 1
Published: over 4 years ago

10.1128/MRA.00574-21

Chromosome-Scale Assembly of the Complete Genome Sequence of Leishmania (Mundinia) orientalis, Isolate LSCM4, Strain LV768
Cited by: 4
Author(s): Hatim Almutairi, Michael D. Urbaniak, Michelle Bates, Narissara Jariyapan, Waleed S. Al-Salem, Rod J. Dillon, Paul A. Bates, Derek Gatherer
Software Mentions: 1
Published: about 3 years ago