Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: plotter

https://packages.ecosyste.ms/registries/pypi.org/packages/plotter

Plotting library with descriptive approach
21 versions
Latest release: about 2 years ago
1 dependent package
479 downloads last month

Papers Mentioning plotter 269

10.3390/genes11030257
mRNAsi Index: Machine Learning in Mining Lung Adenocarcinoma Stem Cell Biomarkers
Cited by: 61
Author(s): Yitong Zhang, Joseph T. Tseng, I-Chia Lien, Fenglan Li, Wei Wu, Hui Li
Software Mentions: 20
Published: almost 5 years ago
10.3389/fimmu.2021.709493
Development of a Novel Immune Infiltration-Based Gene Signature to Predict Prognosis and Immunotherapy Response of Patients With Cervical Cancer
Cited by: 12
Author(s): Sihui Yu, Xi Li, Jiawen Zhang, Sufang Wu
Software Mentions: 13
Published: over 3 years ago
10.3389/fmolb.2021.651525
Potential Role of NEU1 in Hepatocellular Carcinoma: A Study Based on Comprehensive Bioinformatical Analysis
Cited by: 5
Author(s): Zhulin Wu, Li He, Lina Yang, Xuehong Fang, Lisheng Peng
Software Mentions: 7
Published: over 3 years ago
10.3389/fmolb.2021.619110
Screening and Identification of Key Common and Specific Genes and Their Prognostic Roles in Different Molecular Subtypes of Breast Cancer
Cited by: 7
Author(s): Na Sun, Peng Gao, Yanling Li, Zexuan Yan, Zaihui Peng, Yi Zhang, Fei Han, Xiaowei Qi
Software Mentions: 6
Published: almost 4 years ago
10.1186/s12967-020-02260-9
Identification of key genes controlling breast cancer stem cell characteristics via stemness indices analysis
Cited by: 42
Author(s): Jianying Pei, Yanxia Wang, Yan Li
Software Mentions: 6
Published: almost 5 years ago
10.1038/s41598-021-84995-z
Genetic co-expression networks contribute to creating predictive model and exploring novel biomarkers for the prognosis of breast cancer
Cited by: 1
Author(s): Yuan-Kuei Li, Huan-Ming Hsu, Meng-Chiung Lin, Chi‐Wen Chang, Chi‐Ming Chu, Yu‐Jia Chang, Jyh‐Cherng Yu, Chien-Ting Chen, Chen-En Jian, Chien‐An Sun, Kanghua Chen, Ming-Hao Kuo, Chia-Shiang Cheng, Ya-Ting Chang, Yi-Syuan Wu, Hao-Yi Wu, Yating Yang, Chen Lin, Hung‐Che Lin, Je-Ming Hu, Yu-Tien Chang
Software Mentions: 6
Published: over 3 years ago
10.1002/cam4.2927
Identification of key lncRNAs in the tumorigenesis of intraductal pancreatic mucinous neoplasm by coexpression network analysis
Cited by: 11
Author(s): Jun Ding, Yang Li, Yong Zhang, Bin Fan, Qinghe Li, Jian Zhang
Software Mentions: 5
Published: over 4 years ago
10.1155/2020/7503605
Integrated Analyses Identify Immune-Related Signature Associated with Qingyihuaji Formula for Treatment of Pancreatic Ductal Adenocarcinoma Using Network Pharmacology and Weighted Gene Co-Expression Network
Cited by: 9
Author(s): Xiang Qian, Zhuo Chen, Sha Sha Chen, Lu Ming Liu, Ai Qin Zhang
Software Mentions: 5
Published: over 4 years ago
10.1186/s41065-021-00181-1
Prognostic biomarkers and therapeutic targets in oral squamous cell carcinoma: a study based on cross-database analysis
Cited by: 10
Author(s): Wanli Yang, Wei Zhou, Xinhui Zhao, Xiaoqian Wang, Lili Duan, Yiding Li, Liaoran Niu, Junfeng Chen, Yujie Zhang, Yu Han, Daiming Fan, Liu Hong
Software Mentions: 5
Published: over 3 years ago
10.1186/s12885-021-07928-z
Integrated bioinformatic analysis identifies UBE2Q1 as a potential prognostic marker for high grade serous ovarian cancer
Cited by: 8
Author(s): Rachel Topno, I.K. Singh, Manoj Kumar, Pallavi Agarwal
Software Mentions: 5
Published: almost 4 years ago
10.7150/jca.52187
Centromere Protein F (<i>CENPF</i>) Serves as a Potential Prognostic Biomarker and Target for Human Hepatocellular Carcinoma
Cited by: 15
Author(s): Yugang Huang, Xiuwen Chen, Li Wang, Tieyan Wang, Xianbin Tang, Xiaomin Su
Software Mentions: 5
Published: almost 4 years ago
10.1155/2020/7575862
Coexpression Network Analysis of Genes Related to the Characteristics of Tumor Stemness in Triple-Negative Breast Cancer
Cited by: 11
Author(s): Huandan Suo, Tao Zuo, Lei Zhang, Zining Jin, Xiaoying Li, Wei Ma, Zhen Wang, Yue Qiu, Feng Jin, Bin Chen, Yu Cao
Software Mentions: 5
Published: over 4 years ago
10.7150/jca.57225
Integrating 13 Microarrays to Construct a 6 RNA-binding proteins Prognostic Signature for Gastric Cancer patients
Cited by: 0
Author(s): Liqun Zhou, Qi Zhou, You Wu, Lin Xin
Software Mentions: 4
Published: almost 4 years ago
10.1155/2019/1742341
Based on Integrated Bioinformatics Analysis Identification of Biomarkers in Hepatocellular Carcinoma Patients from Different Regions
Cited by: 9
Author(s): Linxin Teng, Kaiyuan Wang, Yu Liu, Yanxia Ma, Weiping Chen, Lei Bi
Software Mentions: 4
Published: about 5 years ago
10.1111/jcmm.15271
Systematic prediction of key genes for ovarian cancer by co‐expression network analysis
Cited by: 12
Author(s): Mingyuan Wang, Jinjin Wang, Jinglan Liu, Lili Zhu, Heng Ma, Jian Zou, Wei Wu, Kangkai Wang
Software Mentions: 4
Published: over 4 years ago
10.15252/emmm.201606198
<scp>LIMT</scp> is a novel metastasis inhibiting lnc<scp>RNA</scp> suppressed by <scp>EGF</scp> and downregulated in aggressive breast cancer
Cited by: 68
Author(s): Aldema Sas‐Chen, Miriam Ragle Aure, Limor Leibovich, Sílvia Carvalho, Yehoshua Enuka, Cindy Körner, Maria Polycarpou‐Schwarz, Sara Lavi, Nava Nevo, Yuri Kuznetsov, Justin C. Yuan, Francisco Azuaje, Igor Ulitsky, Sven Diederichs, Stefan Wiemann, Zohar Yakhini, Vessela N. Kristensen, Anne‐Lise Børresen‐Dale, Yosef Yarden, Torill Sauer, Jürgen Geisler, Solveig Hofvind, Tone Frost Bathen, Elin Borgen, Olav Engebråten, Øystein Fodstad, Øystein Garred, Gry Aarum Geitvik, Rolf Kåresen, Bjørn Naume, Gunhild Mari Mælandsmo, Hege G. Russnes, Ellen Schlichting, Thérese Sørlie, Ole Christian Lingjærde, Kristine Kleivi Sahlberg, Helle Skjerven, Britt Fritzman
Software Mentions: 4
Published: over 8 years ago
10.1097/MD.0000000000023153
Identification of candidate biomarkers correlated with the pathogenesis and prognosis of breast cancer via integrated bioinformatics analysis
Cited by: 8
Author(s): Shuyu Liu, Xinkui Liu, Jiarui Wu, Wei Zhou, Mengwei Ni, Ziqi Meng, Shanshan Jia, Jingyuan Zhang, Siyu Guo, Shan Lu, Yingfei Li
Software Mentions: 4
Published: about 4 years ago
10.3389/fgene.2020.557188
Bioinformatics Identification of the Expression and Clinical Significance of E2F Family in Endometrial Cancer
Cited by: 8
Author(s): YunZheng Zhang, Zihao Wang, Jian Ma, Jianing Huo, Yibing Li, YuShan Wang, Hao Chen, LuHe Shan, Xiaoxin Ma
Software Mentions: 4
Published: about 4 years ago
10.1186/s12943-017-0719-3
Circular RNA_LARP4 inhibits cell proliferation and invasion of gastric cancer by sponging miR-424-5p and regulating LATS1 expression
Cited by: 416
Author(s): Jing Zhang, Hui Liu, Lidan Hou, Ge Wang, Rui Zhang, Yanxia Huang, Xiaoyu Chen, Jingde Zhu
Software Mentions: 4
Published: about 7 years ago
10.1371/journal.pone.0255915
Reciprocal interplay between asporin and decorin: Implications in gastric cancer prognosis
Cited by: 6
Author(s): Dipjit Basak, Zarqua Jamal, Arnab Ghosh, Pronoy Kanti Mondal, Priyanka Dey Talukdar, Semanti Ghosh, Biswadeep Ghosh Roy, Ranajoy Ghosh, Ajay Halder, Abhijit Chowdhury, Gopal Krishna Dhali, Brajadulal Chattopadhyay, Makhan Saha, Abhimanyu Basu, Sukanta Roy, Chitranjan Mukherjee, Nidhan K. Biswas, Urmi Chatterji, Shalini Datta
Software Mentions: 4
Published: over 3 years ago
10.3389/fonc.2020.00162
Validation of Novel Prognostic Biomarkers for Early-Stage Clear-Cell, Endometrioid and Mucinous Ovarian Carcinomas Using Immunohistochemistry
Cited by: 24
Author(s): Hanna Engqvist, Toshima Z. Parris, Anikó Kovács, Elisabeth Werner Rönnerman, Karin Sundfeldt, Per Karlsson, Khalil Helou
Software Mentions: 4
Published: almost 5 years ago
10.3389/fpls.2021.667013
The Cowpea Kinome: Genomic and Transcriptomic Analysis Under Biotic and Abiotic Stresses
Cited by: 11
Author(s): José Ribamar Costa Ferreira‐Neto, Artemisa Nazaré da Costa Borges, Manassés Daniel da Silva, David Anderson de Lima Morais, João Pacífico Bezerra-Neto, Guillaume Bourque, Éderson Akio Kido, Ana Maria Benko‐Iseppon
Software Mentions: 4
Published: over 3 years ago
10.1186/s12885-021-08111-0
A novel 10 glycolysis-related genes signature could predict overall survival for clear cell renal cell carcinoma
Cited by: 20
Author(s): Qianwei Xing, Taidui Zeng, Shouyong Liu, Hong Cheng, Limin Ma, Yi Wang
Software Mentions: 4
Published: over 3 years ago
10.7150/jca.51321
AURKA and FAM83A are prognostic biomarkers and correlated with Tumor-infiltrating Lymphocytes in smoking related Lung Adenocarcinoma
Cited by: 7
Author(s): Mengyu Zhang, Huo Chen, Yingxiao Jiang, Jianyu Liu, Yi-Can Yang, Yunhong Yin, Yi-Qing Qu
Software Mentions: 4
Published: almost 4 years ago
10.18632/aging.102540
Screening, identification and validation of CCND1 and PECAM1/CD31 for predicting prognosis in renal cell carcinoma patients
Cited by: 23
Author(s): Jianfeng Yang, Shen-Nan Shi, Wenhao Xu, Yunhua Qiu, Jinzhou Zheng, Kyeong-Nam Yu, Xianrang Song, Feng Li, Yu Wang, Rui Wang, Yuanyuan Qu, Hai-Liang Zhang, Xiqiu Zhou
Software Mentions: 4
Published: almost 5 years ago
10.3390/cells8121566
Stromal Cell Signature Associated with Response to Neoadjuvant Chemotherapy in Locally Advanced Breast Cancer
Cited by: 20
Author(s): Maria Lúcia Hirata Katayama, René Aloísio da Costa Vieira, Victor Piana de Andrade, Rosimeire Aparecida Roela, Luciana Lima, Lígia Maria Kerr, Adriano Polpo de Campos, Carlos Alberto Pereira, Pedro Adolpho de Menezes Pacheco Serio, Giselly Encinas, Simone Maistro, Matheus de Almeida Leite Petroni, Maria Mitzi Brentani, Maria Aparecida Azevedo Koike Folgueira
Software Mentions: 4
Published: about 5 years ago
10.7150/jca.49557
Construction of novel mRNA-miRNA-lncRNA regulatory networks associated with prognosis of ovarian cancer
Cited by: 18
Author(s): Lingling Gao, Xiao Li, Xin Nie, Qin Guo, Qing Liu, Yue Qi, Juanjuan Liu, Bei Lin
Software Mentions: 4
Published: almost 5 years ago
10.1172/jci.insight.143289
LncRNA DRAIR is downregulated in diabetic monocytes and modulates inflammatory phenotype via epigenetic mechanisms
Cited by: 15
Author(s): Marpadga A. Reddy, Vishnu Amaram, Sadhan Das, Vinay Singh Tanwar, Rituparna Ganguly, Mei Wang, Linda Lanting, Lingxiao Zhang, Maryam Abdollahi, Zhuo Chen, Xiwei Wu, Sridevi Devaraj, Rama Natarajan
Software Mentions: 4
Published: over 3 years ago
10.3390/jcm8111928
B4GALT1 Is a New Candidate to Maintain the Stemness of Lung Cancer Stem Cells
Cited by: 12
Author(s): Claudia De Vitis, Giacomo Corleone, Valentina Salvati, Francesca Ascenzi, Matteo Pallocca, Francesca De Nicola, Maurizio Fanciulli, Simona Di Martino, Sara Bruschini, Christian Napoli, Alberto Rícci, Massimiliano Bassi, Federico Venuta, Erino Angelo Rendina, Gennaro Ciliberto, Rita Mancini
Software Mentions: 3
Published: about 5 years ago
10.18632/aging.203425
ADAM15 correlates with prognosis, immune infiltration and apoptosis in hepatocellular carcinoma
Cited by: 9
Author(s): Jun Xu, Yong Guan, Yi Chao Zhang, Zhendong Qiu, Yu Zhou, Chen Chen, Jie-Ping Yu, Weixing Wang
Software Mentions: 3
Published: over 3 years ago
10.1186/s12935-018-0513-3
Integrated TCGA analysis implicates lncRNA CTB-193M12.5 as a prognostic factor in lung adenocarcinoma
Cited by: 26
Author(s): Wang Xue-hai, Gang Li, Qingsong Luo, Jianyong Xie, Chongzhi Gan
Software Mentions: 3
Published: almost 7 years ago
10.1155/2020/9280841
Identification of <i>F5</i> as a Prognostic Biomarker in Patients with Gastric Cancer
Cited by: 12
Author(s): Yi Liu, Xiwen Liao, Yanding Qin, Xianwei Mo, Shuang Luo
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41389-020-0204-5
Transglutaminase-2 facilitates extracellular vesicle-mediated establishment of the metastatic niche
Cited by: 79
Author(s): Aparna Shinde, Juan Sebastian Paez, Sarah Libring, Kelsey Hopkins, Luis Solorio, Michael K. Wendt
Software Mentions: 3
Published: almost 5 years ago
10.1515/med-2020-0405
Identification of the hub genes RUNX2 and FN1 in gastric cancer
Cited by: 12
Author(s): Chao Han, Lei Jin, Xuemei Ma, Hao Qin, Hui‐Yi Lin, Zhongtao Zhang
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12920-019-0645-x
CDK1 and CCNB1 as potential diagnostic markers of rhabdomyosarcoma: validation following bioinformatics analysis
Cited by: 23
Author(s): Qianru Li, Liang Zhang, Jinfang Jiang, Yangyang Zhang, Xiaomeng Wang, Qiaochu Zhang, Yang Wang, Chunxia Liu, Feng Li
Software Mentions: 3
Published: about 5 years ago
10.1038/s41598-020-67525-1
Machine learning analysis identifies genes differentiating triple negative breast cancers
Cited by: 22
Author(s): Charu Kothari, Mazid Abiodoun Osseni, Lynda Agbo, Geneviève Ouellette, Maxime Déraspe, François Laviolette, Jacques Corbeil, Jean-Philippe Lambert, Caroline Diorio, Francine Durocher
Software Mentions: 3
Published: over 4 years ago
10.1042/BSR20181925
Co-expression of key gene modules and pathways of human breast cancer cell lines
Cited by: 13
Author(s): Yadong Wu, Lin Feng, Siyang Luo, Xinhai Yin, He Dan, Jianguo Liu, Zhao-hui Yue, Jukun Song
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-020-76024-2
An in-silico method leads to recognition of hub genes and crucial pathways in survival of patients with breast cancer
Cited by: 17
Author(s): Sepideh Dashti, Mohammad Taheri, Soudeh Ghafouri‐Fard
Software Mentions: 3
Published: about 4 years ago
10.1042/BSR20210055
Early B-cell factors involve in the tumorigenesis and predict the overall survival of gastric cancer
Cited by: 3
Author(s): Qing Wang, Jiahong Liang, Xianyu Hu, Shen Gu, Qingdong Xu, Yan Jiang
Software Mentions: 3
Published: over 3 years ago
10.3389/fonc.2021.679262
RNA Sequence Profiling Reveals Unique Immune and Metabolic Features of Breast Cancer Brain Metastases
Cited by: 4
Author(s): Liuling Xiao, Jie Zhou, Hongyi Liu, Yuanyuan Zhou, Weibin Chen, Wugeng Cui, Yilin Zhao
Software Mentions: 3
Published: over 3 years ago
10.3389/fmicb.2019.00325
Proteomic Analysis of Lactobacillus nagelii in the Presence of Saccharomyces cerevisiae Isolated From Water Kefir and Comparison With Lactobacillus hordei
Cited by: 16
Author(s): Julia Bechtner, Di Xu, Jürgen Behr, Christina Ludwig, Rudi F. Vogel
Software Mentions: 3
Published: almost 6 years ago
10.3390/molecules25163609
Involvement of Differentially Expressed microRNAs in the PEGylated Liposome Encapsulated 188Rhenium-Mediated Suppression of Orthotopic Hypopharyngeal Tumor
Cited by: 5
Author(s): Bei Lin, Shen-Ying Wan, Lin Ma, Cheng-Yen Chang, Ting-Wen Chen, Muh‐Hwa Yang, Yi Jang Lee
Software Mentions: 3
Published: over 4 years ago
10.3390/genes9060297
Deciphering the Adaptation of Corynebacterium glutamicum in Transition from Aerobiosis via Microaerobiosis to Anaerobiosis
Cited by: 17
Author(s): Julian Lange, Eugenia Münch, Jan Müller, Tobias Busche, Jörn Kalinowski, Ralf Takors, Bastian Blombach
Software Mentions: 3
Published: over 6 years ago
10.3389/fgene.2021.574196
Identification of the Functions and Prognostic Values of RNA Binding Proteins in Bladder Cancer
Cited by: 18
Author(s): Yue Wu, Zheng Liu, Wa Xian, Huan Feng, Bintao Hu, Bo Liu, Yang Luan, Yajun Ruan, Xiaohui Liu, Zhuo Liu, Shaogang Wang, Jihong Liu, Tao Wang
Software Mentions: 3
Published: over 3 years ago
10.1186/s40164-020-00169-z
RDGN-based predictive model for the prognosis of breast cancer
Cited by: 10
Author(s): Bing Dong, Ming Yi, Suxia Luo, An‐Ping Li, Kongming Wu
Software Mentions: 3
Published: over 4 years ago
10.1111/jcmm.14458
Survival analysis and functional annotation of long non‐coding RNAs in lung adenocarcinoma
Cited by: 13
Author(s): Abbas Salavaty, Zahra Rezvani, Ali Najafi
Software Mentions: 3
Published: over 5 years ago
10.3389/fgene.2019.01260
Joint Transcriptomic Analysis of Lung Cancer and Other Lung Diseases
Cited by: 8
Author(s): Beatriz Andrea Otálora‐Otálora, Mauro Florez, Liliana López‐Kleine, Alejandra Cañas Arboleda, Diana Urrego, Alejandra Rojas
Software Mentions: 3
Published: almost 5 years ago
10.3389/fonc.2020.598437
Elevated Heterogeneous Nuclear Ribonucleoprotein C Expression Correlates With Poor Prognosis in Patients With Surgically Resected Lung Adenocarcinoma
Cited by: 18
Author(s): Wei Guo, Qilin Huai, Guochao Zhang, Lei Guo, Peng Song, Xuemin Xue, Fengwei Tan, Qi Xue, Shugeng Gao, Jie He
Software Mentions: 3
Published: almost 4 years ago
10.3390/cells9092092
An Evolutionary Cancer Epigenetic Approach Revealed DNA Hypermethylation of Ultra-Conserved Non-Coding Elements in Squamous Cell Carcinoma of Different Mammalian Species
Cited by: 2
Author(s): Luca Morandi, Silvia Sabattini, Andrea Renzi, Antonella Rigillo, Giuliano Bettini, Eva Dervas, A Schauer, M. Morandi, Davide Bartolomeo Gissi, Achille Tarsitano, Stefania Evangelisti, Caterina Tonon
Software Mentions: 3
Published: about 4 years ago
10.1186/1751-0473-9-11
Methylation plotter: a web tool for dynamic visualization of DNA methylation data
Cited by: 49
Author(s): Izaskun Mallona, Anna Díez-Villanueva, Miguel A. Peinado
Software Mentions: 3
Published: over 10 years ago
10.1002/cam4.3543
Elevated expression of FREM1 in breast cancer indicates favorable prognosis and high‐level immune infiltration status
Cited by: 15
Author(s): Hanning Li, Xingrui Li, Zheng‐tao Lv, Miaomiao Cai, Ge Wang, Zhaohui Yang
Software Mentions: 2
Published: about 4 years ago
10.1186/s12885-021-08597-8
NR1D1 suppressed the growth of ovarian cancer by abrogating the JAK/STAT3 signaling pathway
Cited by: 12
Author(s): Huailin Wang, Yan Fu
Software Mentions: 2
Published: over 3 years ago
10.7150/thno.43198
Non-canonical signaling pathway of SNAI2 induces EMT in ovarian cancer cells by suppressing miR-222-3p transcription and upregulating PDCD10
Cited by: 46
Author(s): Lili Fan, Lei Han, Sai Zhang, Yuan Peng, Chunyan Fu, Guang Shu, Gang Yin
Software Mentions: 2
Published: almost 5 years ago
10.1186/s13058-021-01418-7
High IRF8 expression correlates with CD8 T cell infiltration and is a predictive biomarker of therapy response in ER-negative breast cancer
Cited by: 16
Author(s): Gerardo Gatti, Courtney B. Betts, Darío Rocha, Maribel Nicola, Verónica Grupe, Cecilia Ditada, Nicolás Núñez, Emiliano Roselli, Paula Araya, Jeremías Dutto, Lucia Boffelli, Elmer Fernández, Lisa M. Coussens, Mariana Maccioni
Software Mentions: 2
Published: over 3 years ago
10.18632/oncotarget.22009
The WAVE3-YB1 interaction regulates cancer stem cells activity in breast cancer
Cited by: 21
Author(s): Kamila Błędzka, Barbara J. Schiemann, William P. Schiemann, Paul L. Fox, Edward F. Plow, Khalid Sossey‐Alaoui
Software Mentions: 2
Published: about 7 years ago
10.1186/s12935-020-01591-3
BTG1 inhibits malignancy as a novel prognosis signature in endometrial carcinoma
Cited by: 8
Author(s): Yibing Li, Jianing Huo, Jiaxi He, Yunzheng Zhang, Xiaoxin Ma
Software Mentions: 2
Published: about 4 years ago
10.18632/oncotarget.27880
High mRNA expression of LY6 gene family is associated with overall survival outcome in pancreatic ductal adenocarcinoma
Cited by: 4
Author(s): Eric Russ, Krithika Bhuvaneshwar, Guisong Wang, Benjamin Jin, Michele M. Gage, Subha Madhavan, Yuriy Gusev, Geeta Upadhyay
Software Mentions: 2
Published: almost 4 years ago
10.1186/s13048-019-0578-1
Identification of key biomarkers associated with development and prognosis in patients with ovarian carcinoma: evidence from bioinformatic analysis
Cited by: 21
Author(s): Jiayu Shen, Shuqian Yu, Xiaochun Sun, Miao Yin, Fei Jing, Jianwei Zhou
Software Mentions: 2
Published: about 5 years ago
10.18632/oncotarget.9132
Identification of breast cancer candidate genes using gene co-expression and protein-protein interaction information
Cited by: 19
Author(s): Z.Q. Yue, Haitao Li, Yabing Yang, Sajid Hussain, Chun-Hou Zheng, Junfeng Xia, Yan Chen
Software Mentions: 2
Published: over 8 years ago
10.1186/s12870-017-1208-y
Polyamines in the life of Arabidopsis: profiling the expression of S-adenosylmethionine decarboxylase (SAMDC) gene family during its life cycle
Cited by: 27
Author(s): Rajtilak Majumdar, Lin Shao, Swathi A. Turlapati, Subhash C. Minocha
Software Mentions: 2
Published: about 7 years ago
10.3390/biology10050407
Musashi–1—A Stemness RBP for Cancer Therapy?
Cited by: 12
Author(s): Nadine Bley, Ali Hmedat, Simon Müller, Robin Rolnik, Alexander Rausch, Marcell Lederer, Stefan Hüttelmaier
Software Mentions: 2
Published: over 3 years ago
10.1186/s13045-019-0697-6
Transcriptional factor six2 promotes the competitive endogenous RNA network between CYP4Z1 and pseudogene CYP4Z2P responsible for maintaining the stemness of breast cancer cells
Cited by: 49
Author(s): Lufeng Zheng, Qianqian Guo, Chenxi Xiang, Shijia Liu, Yahui Jiang, Lanlan Gao, Haiwei Ni, Ting Wang, Qiong Zhao, Hai Liu, Yingying Xing, Yaohui Wang, Xiaoman Li, Tao Xi
Software Mentions: 2
Published: almost 6 years ago
10.1186/s13046-021-01999-3
Zinc transporter SLC39A13/ZIP13 facilitates the metastasis of human ovarian cancer cells via activating Src/FAK signaling pathway
Cited by: 14
Author(s): Xinxin Cheng, Jie Wang, Chunling Liu, Tianduo Jiang, Ningzhi Yang, Dan Liŭ, Huanhuan Zhao, Zhelong Xu
Software Mentions: 2
Published: over 3 years ago
10.1186/s13578-021-00675-5
RETRACTED ARTICLE: Long noncoding RNA SNHG1 promotes TERT expression by sponging miR-18b-5p in breast cancer
Cited by: 7
Author(s): Yujuan Kang, Lin Wan, Qin Wang, Yanling Yin, Jiena Liu, Lei Liu, Hao Wu, Lei Zhang, Xin Zhang, Shouping Xu, Da Pang
Software Mentions: 2
Published: over 3 years ago
10.1038/s41416-020-0992-6
Progesterone receptor membrane component 1 promotes the growth of breast cancers by altering the phosphoproteome and augmenting EGFR/PI3K/AKT signalling
Cited by: 35
Author(s): Diego A. Pedroza, Venkatesh Rajamanickam, Ramadevi Subramani, Alejandra Bencomo, Adriana Galvez, Rajkumar Lakshmanaswamy
Software Mentions: 2
Published: over 4 years ago
10.1155/2020/2061024
Integrated Bioinformatic Analysis Identifies Networks and Promising Biomarkers for Hepatitis B Virus-Related Hepatocellular Carcinoma
Cited by: 13
Author(s): Yun Ji, Yuyao Yin, Weizhen Zhang
Software Mentions: 2
Published: over 4 years ago
10.1186/s12967-018-1639-8
Identification of invasion-metastasis-associated microRNAs in hepatocellular carcinoma based on bioinformatic analysis and experimental validation
Cited by: 60
Author(s): Weiyang Lou, Jing Chen, Bo Ding, Danni Chen, Huilin Zheng, Donghai Jiang, Liang Xu, Chang Bao, Gengyu Cao, Weimin Fan
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-020-67643-w
Systems biology comprehensive analysis on breast cancer for identification of key gene modules and genes associated with TNM-based clinical stages
Cited by: 17
Author(s): Elham Amjad, Solmaz Asnaashari, Babak Sokouti, Siavoush Dastmalchi
Software Mentions: 2
Published: over 4 years ago
10.3390/cancers11030337
Prognostic and Clinicopathological Significance of SERTAD1 in Various Types of Cancer Risk: A Systematic Review and Retrospective Analysis
Cited by: 9
Author(s): Raj Kumar Mongre, Samil Jung, Chandra Bhushan Mishra, Beom Suk Lee, Shikha Kumari, Myeong‐Sok Lee
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-68093-0
Mechanism of Astragalus membranaceus in the treatment of laryngeal cancer based on gene co-expression network and molecular docking
Cited by: 8
Author(s): Kai Dong, Meng Qi Huo, Heng Sun, Tian Ke Li, Dan Li
Software Mentions: 2
Published: over 4 years ago
10.3390/cancers12040786
A Novel Role for the Tumor Suppressor Gene ITF2 in Tumorigenesis and Chemotherapy Response
Cited by: 9
Author(s): Olga Pernía, Ana Sastre-Perona, Carlos Rodriguez-Antolín, Álvaro García-Guede, María Palomares‐Bralo, Rocío Rosas, Darío Sánchez-Cabrero, Patricia Cruz, Carmen Rodrı́guez, MDolores Diestro, Rubén Martín‐Arenas, Verónica Pulido, Pilar Santisteban, Javier de Castro, Olga Vera, Inmaculada Ibáñez de Cáceres
Software Mentions: 2
Published: over 4 years ago
10.1042/BSR20204293
High expression of COL5A2, a member of COL5 family, indicates the poor survival and facilitates cell migration in gastric cancer
Cited by: 20
Author(s): Yongjun Tan, Qingchuan Chen, Xing Yao, Chao Zhang, Siwei Pan, Wei An, Hui Xu
Software Mentions: 2
Published: over 3 years ago
10.1186/s12885-021-08308-3
Identification of significant genes as prognostic markers and potential tumor suppressors in lung adenocarcinoma via bioinformatical analysis
Cited by: 15
Author(s): Mingze Lu, Xiao-Wen Fan, Wei-Lin Liao, Yijiao Li, Li Ma, Man Yuan, Rui Gu, Zhengdao Wei, Chao Wang, Hua Zhang
Software Mentions: 2
Published: over 3 years ago
10.1042/BSR20204359
Identified a disintegrin and metalloproteinase with thrombospondin motifs 6 serve as a novel gastric cancer prognostic biomarker by bioinformatics analysis
Cited by: 4
Author(s): Yazhen Zhu, Yi Liu, Xiwen Liao, Shuang Luo
Software Mentions: 2
Published: over 3 years ago
10.7717/peerj.4692
Candidate genes in gastric cancer identified by constructing a weighted gene co-expression network
Cited by: 46
Author(s): Jian Chen, Xiuwen Wang, Bing Hu, Yong He, Xiaojun Qian, Wei Wang
Software Mentions: 2
Published: over 6 years ago
10.3389/fphar.2021.617555
Uncovering the Pharmacological Mechanism of 2-Dodecyl-6-Methoxycyclohexa-2,5 -Diene-1,4-Dione Against Lung Cancer Based on Network Pharmacology and Experimental Evaluation
Cited by: 5
Author(s): Lihui Wang, Xin Yang, Qiong Song, Jiejun Fu, Wenchu Wang, Kechen Du, Shuai Chen, Jinjin Cao, Renbin Huang, Chunlin Zou
Software Mentions: 2
Published: almost 4 years ago
10.7150/jca.47895
Independent prognostic implications of <i>RRM2</i> in lung adenocarcinoma
Cited by: 27
Author(s): Chi Ma, Huan Luo, Jing Cao, Chengshan Gao, Xianen Fa, Guangsuo Wang
Software Mentions: 2
Published: almost 5 years ago
10.7717/peerj.11647
Genome-wide analysis, identification, evolution and genomic organization of dehydration responsive element-binding (DREB) gene family in <i>Solanum tuberosum</i>
Cited by: 10
Author(s): Nida Mushtaq, Faiza Munir, Alvina Gul, Rabia Amir, Rehan Zafar Paracha
Software Mentions: 2
Published: over 3 years ago
10.1042/BSR20171175
Prognostic roles of signal transducers and activators of transcription family in human breast cancer
Cited by: 19
Author(s): Shuntao Wang, Lili Yu, Wei Shi, Xueqin Li, Lixiu Yu
Software Mentions: 2
Published: almost 6 years ago
10.18632/aging.101933
A novel mRNA-miRNA-lncRNA competing endogenous RNA triple sub-network associated with prognosis of pancreatic cancer
Cited by: 142
Author(s): Wenlong Wang, Weiyang Lou, Bo Ding, Beng Yang, Hongzhou Lu, Qing Kong, Weimin Fan
Software Mentions: 2
Published: over 5 years ago
10.1186/s12957-021-02174-w
Identification and validation of three core genes in p53 signaling pathway in hepatitis B virus-related hepatocellular carcinoma
Cited by: 11
Author(s): Mingxue Yu, Wenli Xu, Yusheng Jie, Jiahui Pang, Siqi Huang, Jing Cao, Jiao Gong, Xinhua Li, Yutian Chong
Software Mentions: 2
Published: over 3 years ago
10.7717/peerj.10433
Identification and prognostic value of DLGAP5 in endometrial cancer
Cited by: 10
Author(s): Ruoyi Zheng, Zhengzheng Shi, Wenzhi Li, Jianqin Yu, Yuli Wang, Qing Zhou
Software Mentions: 2
Published: about 4 years ago
10.3389/fonc.2019.00368
Identifying the Antiproliferative Effect of Astragalus Polysaccharides on Breast Cancer: Coupling Network Pharmacology With Targetable Screening From the Cancer Genome Atlas
Cited by: 25
Author(s): Cun Liu, Huayao Li, Kejia Wang, Jing Zhuang, Fuxiang Chu, Chundi Gao, Lijuan Liu, Fubin Feng, Chao Zhou, Wenfeng Zhang, Changgang Sun
Software Mentions: 2
Published: over 5 years ago
10.1074/mcp.M115.050401
Translating Proteomic Into Functional Data: An High Mobility Group A1 (HMGA1) Proteomic Signature Has Prognostic Value in Breast Cancer
Cited by: 30
Author(s): E Maurizio, Jacek R. Wiśniewski, Yari Ciani, Antonella Amato, Laura Arnoldo, Carlotta Penzo, Silvia Pegoraro, Vincenzo Giancotti, Alberto Zambelli, Silvano Piazza, Guidalberto Manfioletti, Riccardo Sgarra
Software Mentions: 2
Published: almost 9 years ago
10.3389/fonc.2019.01114
Bioinformatic Identification of miR-622 Key Target Genes and Experimental Validation of the miR-622-RNF8 Axis in Breast Cancer
Cited by: 22
Author(s): Chuanyang Liu, Min Lü, Jingyu Kuang, Chushu Zhu, Xiaozhen Guo, Lingyun Zhu
Software Mentions: 2
Published: about 5 years ago
10.3389/fcell.2021.711894
GINS1 Induced Sorafenib Resistance by Promoting Cancer Stem Properties in Human Hepatocellular Cancer Cells
Cited by: 11
Author(s): Sheng Li, Lina Wu, Hong Zhang, Xijuan Liu, Zhong Lin Wang, Bin Dong, Guang Cao
Software Mentions: 2
Published: over 3 years ago
10.3389/fgene.2021.637755
Comprehensive Analysis of Aerobic Exercise-Related Genes Identifies CDCA4 That Promotes the Progression of Osteosarcoma
Cited by: 4
Author(s): Suyu Hao, Jun Zhu, Xinyue Zhang, Jingyue Qiu, Xuan Qin, Liping Ye
Software Mentions: 2
Published: almost 4 years ago
10.1016/j.csbj.2021.08.047
MXD3 as an onco-immunological biomarker encompassing the tumor microenvironment, disease staging, prognoses, and therapeutic responses in multiple cancer types
Cited by: 25
Author(s): Szu-Yuan Wu, Kuan-Chou Lin, Bashir Lawal, Alexander T.H. Wu, Chia Chang Wu
Software Mentions: 2
Published: almost 4 years ago
10.3390/biom11081193
The Identification of Zinc-Finger Protein 433 as a Possible Prognostic Biomarker for Clear-Cell Renal Cell Carcinoma
Cited by: 6
Author(s): Simone O. Heyliger, Karam F.A. Soliman, Marilyn D. Saulsbury, R. Renee Reams
Software Mentions: 2
Published: over 3 years ago
10.15252/embj.2018100158
<scp>SHLD</scp> 2/ <scp>FAM</scp> 35A co‐operates with <scp>REV</scp> 7 to coordinate <scp>DNA</scp> double‐strand break repair pathway choice
Cited by: 102
Author(s): Steven Findlay, John A. Heath, Vincent Luo, Abba Malina, Théo Morin, Yan Coulombe, Billel Djerir, Zhigang Li, Arash Samiei, Estelle R. Simo‐Cheyou, Marc Karam, Halil Bagci, Dolev Rahat, Damien Grapton, Élise G. Lavoie, Christian Dove, Husam Khaled, Hellen Kuasne, Koren K. Mann, Kathleen Klein, Celia Greenwood, Yuval Tabach, Morag Park, Jean‐François Côté, Jean‐Yves Masson, Alexandre Maréchal, Alexandre Orthwein
Software Mentions: 2
Published: over 6 years ago
10.1155/2020/2170606
Prognostic Values of Transforming Growth Factor-Beta Subtypes in Ovarian Cancer
Cited by: 4
Author(s): Jingyang Zhou, Wenxiao Jiang, Wenbin Huang, Miaomiao Ye, Xueqiong Zhu
Software Mentions: 1
Published: over 4 years ago
10.1002/cam4.3288
Long noncoding RNA HCG18 up‐regulates the expression of WIPF1 and YAP/TAZ by inhibiting miR‐141‐3p in gastric cancer
Cited by: 23
Author(s): Yan Liu, Wentao Lin, Yangyang Dong, Xinyu Li, Zhibin Lin, Jing Jia, Wenbing Zou, Yu Pan
Software Mentions: 1
Published: over 4 years ago
10.1038/s41417-019-0109-7
PROM1 and PROM2 expression differentially modulates clinical prognosis of cancer: a multiomics analysis
Cited by: 37
Author(s): Subbroto Kumar Saha, Saiful Islam, Kyungsup Kwak, Shahedur Rahman, Ssang-Goo Cho
Software Mentions: 1
Published: over 5 years ago
10.1186/s12885-020-07573-y
EP300 knockdown reduces cancer stem cell phenotype, tumor growth and metastasis in triple negative breast cancer
Cited by: 22
Author(s): Alexander Ring, Pushpinder Kaur, Julie E. Lang
Software Mentions: 1
Published: about 4 years ago
10.1186/s40880-018-0315-y
DDIT4 promotes gastric cancer proliferation and tumorigenesis through the p53 and MAPK pathways
Cited by: 58
Author(s): Feng Du, Lina Sun, Yi Chu, Tingyu Li, Chao Lei, Xin Wang, Mingzuo Jiang, Yali Min, Yuanyuan Lu, Xiaodi Zhao, Yongzhan Nie, Daiming Fan
Software Mentions: 1
Published: over 6 years ago
10.1186/s12935-019-0956-1
Prognostic significance of TOP2A in non-small cell lung cancer revealed by bioinformatic analysis
Cited by: 29
Author(s): Wenxia Ma, Bin Wang, Yaping Zhang, Ziyue Wang, Dan Niu, Siyu Chen, Zhirong Zhang, Ningning Shen, Weixia Han, Xiaoqin Zhang, Rong Wei, Chen Wang
Software Mentions: 1
Published: about 5 years ago
10.1186/s12935-019-1075-8
Hyperglycemia promotes Snail-induced epithelial–mesenchymal transition of gastric cancer via activating ENO1 expression
Cited by: 27
Author(s): Xin Xu, Bang Chen, Shaopu Zhu, Jiawei Zhang, Xueling He, Guodong Cao, Bo Chen
Software Mentions: 1
Published: about 5 years ago
10.1155/2021/8883800
Determination of Potential Therapeutic Targets and Prognostic Markers of Ovarian Cancer by Bioinformatics Analysis
Cited by: 5
Author(s): Jing Zhang, Shanying Huang, Li-Ni Quan, Qingcai Meng, Haiyan Wang, Jie Wang, Cheqing Jin
Software Mentions: 1
Published: over 3 years ago
10.18632/aging.101690
The ER-alpha mutation Y537S confers Tamoxifen-resistance via enhanced mitochondrial metabolism, glycolysis and Rho-GDI/PTEN signaling: Implicating TIGAR in somatic resistance to endocrine therapy
Cited by: 18
Author(s): Marco Fiorillo, Rosa Sánchez‐Alvarez, Federica Sotgia, Michael P. Lisanti
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12935-019-0854-6
Identification of hub genes and therapeutic drugs in esophageal squamous cell carcinoma based on integrated bioinformatics strategy
Cited by: 19
Author(s): Wanli Yang, Xinhui Zhao, Yu Han, Lili Duan, Xin Lu, Xiaoqian Wang, Yujie Zhang, Wei Zhou, Jinqiang Liu, Hongwei Zhang, Qingchuan Zhao, Liu Hong, Daiming Fan
Software Mentions: 1
Published: over 5 years ago