Ecosyste.ms: Papers

10.1038/s10038-019-0687-0

Visualization tools for human structural variations identified by whole-genome sequencing
Cited by: 8
Author(s): Toshiyuki Yokoyama, Masahiro Kasahara
Software Mentions: 7
Published: about 5 years ago

10.1186/s13059-017-1165-7

BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
Cited by: 20
Author(s): Inês de Santiago, Wei Liu, Ke Yuan, Martin O’Reilly, Chandra Sekhar Reddy Chilamakuri, Bruce A.J. Ponder, Kerstin B. Meyer, Florian Markowetz
Software Mentions: 6
Published: almost 8 years ago

10.1186/1471-2105-8-254

Progressive multiple sequence alignments from triplets
Cited by: 22
Author(s): Matthias Kruspe, Peter F. Stadler
Software Mentions: 5
Published: over 17 years ago

10.1534/g3.115.017665

Shared Genomic Regions Between Derivatives of a Large Segregating Population of Maize Identified Using Bulked Segregant Analysis Sequencing and Traditional Linkage Analysis
Cited by: 26
Author(s): Nicholas Haase, Timothy Beissinger, Candice N. Hirsch, Brieanne Vaillancourt, Shweta Deshpande, Kerrie Barry, C. Robin Buell, Shawn M. Kaeppler, Natalia de León
Software Mentions: 3
Published: over 9 years ago

10.1093/bioinformatics/btw167

pileup.js: a JavaScript library for interactive and in-browser visualization of genomic data
Cited by: 21
Author(s): Dan Vanderkam, Bülent Arman Aksoy, Isaac Hodes, Jaclyn Perrone, Jeff Hammerbacher
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0086664

Comprehensive Analysis to Improve the Validation Rate for Single Nucleotide Variants Detected by Next-Generation Sequencing
Cited by: 19
Author(s): Mi-Hyun Park, Hwanseok Rhee, Jung Hoon Park, Hae‐Mi Woo, Byung‐Ok Choi, Boyoung Kim, Ki Wha Chung, Yoobok Cho, Hyung Jin Kim, Ji‐Won Jung, Soo Kyung Koo
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0038470

Consensus Rules in Variant Detection from Next-Generation Sequencing Data
Cited by: 31
Author(s): Peilin Jia, Fĕi Li, Jufeng Xia, Haiquan Chen, Hongbin Ji, William Pao, Zhongming Zhao
Software Mentions: 1
Published: over 12 years ago

10.1534/g3.111.001479

Whole-Genome Sequencing of<i>Sordaria macrospora</i>Mutants Identifies Developmental Genes
Cited by: 75
Author(s): Minou Nowrousian, Ines Teichert, Sandra Masloff, Ulrich Kück
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0048792

Novel SNP Discovery in African Buffalo, Syncerus caffer, Using High-Throughput Sequencing
Cited by: 16
Author(s): Nikki le Roex, Harry Noyes, Andy Brass, Daniel G. Bradley, SJ Kemp, Suzanne Kay, Paul D. van Helden, Eileen G. Hoal
Software Mentions: 1
Published: about 12 years ago