Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-017-1165-7

https://doi.org/10.1186/s13059-017-1165-7

BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes

Cited by: 20
Author(s): Inês de Santiago, Wei Liu, Ke Yuan, Martin O’Reilly, Chandra Sekhar Reddy Chilamakuri, Bruce A.J. Ponder, Kerstin B. Meyer, Florian Markowetz
Published: over 7 years ago

Software Mentions 6

bioconductor: BaalChIP
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
Papers that mentioned: 1
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: iASeq
iASeq: integrating multiple sequencing datasets for detecting allele-specific events
Papers that mentioned: 4
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
bioconductor: VariantAnnotation
Annotation of Genetic Variants
Papers that mentioned: 47
pypi: pileup
Pileup
Papers that mentioned: 9