pypi: package | Projects | Ecosyste.ms: Papers

10.15252/emmm.201910491

Macrophages induce malignant traits in mammary epithelium via IKKε/TBK1 kinases and the serine biosynthesis pathway
Cited by: 9
Author(s): Ewa Wilcz-Villega, Edward Carter, Alastair Ironside, Ruoyan Xu, Isabella Mataloni, Julie Holdsworth, William Edward Jones, Rocío Moreno Béjar, Lukas Uhlik, Robert Bentham, Susana A. Godinho, Jesmond Dalli, Richard Grose, György Szabadkai, Louise Jones, Kairbaan Hodivala‐Dilke, Katiuscia Bianchi
Software Mentions: 2
Published: almost 7 years ago

10.15252/emmm.201910852

A thiol‐bound drug reservoir enhances APR‐246‐induced mutant p53 tumor cell death
Cited by: 20
Author(s): Sophia Ceder, Sofi Eriksson, Emarndeena H Cheteh, Swati Dawar, Mariana Corrales Benitez, Vladimir J. N. Bykov, Kenji M. Fujihara, Mélodie Grandin, Xiaodun Li, Susanne Ramm, Corina Behrenbruch, Kaylene J. Simpson, Frédéric Hollande, Lars Abrahmsén, Nicholas J. Clemons, Klas G. Wiman
Software Mentions: 2
Published: almost 6 years ago

10.17179/excli2017-752

The predictive value of pre- and post-induction chemotherapy plasma EBV DNA level and tumor volume for the radiosensitivity of locally advanced nasopharyngeal carcinoma.
Cited by: 6
Author(s): Yang Song, He Xiao, Zhenzhou Yang, Mingying Geng, Jungang Ma, Yujiang Ren, Yun Liu, Ge Wang
Software Mentions: 2
Published: almost 10 years ago

10.1002/ece3.3116

A novel meta-analytical approach to improve systematic review of rates and patterns of microevolution
Cited by: 3
Author(s): Lucas D. Gorné, Sandra Dı́az
Software Mentions: 2
Published: over 9 years ago

10.1002/ece3.736

Multivariate sexual selection on male song structure in wild populations of sagebrush crickets,Cyphoderris strepitans(Orthoptera: Haglidae)
Cited by: 11
Author(s): Geoffrey D. Ower, Kevin A. Judge, Sandra Steiger, Kyle J. Caron, Rebecca A. Smith, John Hunt, Scott K. Sakaluk
Software Mentions: 2
Published: about 13 years ago

10.1002/ece3.7668

Range‐wide breeding habitat use of the critically endangered Yellow‐breasted BuntingEmberiza aureolaafter population collapse
Cited by: 3
Author(s): Ilka Beermann, Alexander Thomas, Yury Anisimov, Marc Bastardot, Nyambayar Batbayar, Batmunkh Davaasuren, Yu.N. Gerasimov, Makoto Hasebe, G. L. Nakul, Jugdernamjil Nergui, Pavel Ktitorov, Olga Kulikova, Wieland Heim
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.2570

Dominance in a ground‐dwelling ant community of banana agroecosystem
Cited by: 12
Author(s): Dominique Carval, Violaine Cotté, Rémi Resmond, Benjamin Perrin, Philippe Tixier
Software Mentions: 2
Published: almost 10 years ago

10.1002/ece3.897

Invasion biology in non‐free‐living species: interactions between abiotic (climatic) and biotic (host availability) factors in geographical space in crayfish commensals (Ostracoda, Entocytheridae)
Cited by: 14
Author(s): Alexandre Mestre, Josep A. Aguilar-Alberola, D. A. T. Baldry, Hüsamettin Balkıs, Adam Ellis, José A. Gil‐Delgado, Karsten Grabow, Göran Klobučar, Antonín Kouba, Ivana Maguire, Andreas Martens, Ayşegül Mülayim, Juan Rueda, Burkhard Scharf, Menno Soes, Juan S. Monrós, Francesc Mesquita‐Joanes
Software Mentions: 2
Published: almost 13 years ago

10.1002/ece3.7490

Ancestral ecological regime shapes reaction to food limitation in the Least Killifish, Heterandria formosa
Cited by: 3
Author(s): Anja Felmy, Jeff Leips, Joseph Travis
Software Mentions: 2
Published: over 5 years ago

10.1002/ecy.3181

Scale‐dependent effects of host patch traits on species composition in a stickleback parasite metacommunity
Cited by: 17
Author(s): Daniel I. Bolnick, Emlyn J. Resetarits, Kimberly M. Ballare, Yoel E. Stuart, William E. Stutz
Software Mentions: 2
Published: about 6 years ago

10.1111/1462-2920.14297

Bacterial interactions during sequential degradation of cyanobacterial necromass in a sulfidic arctic marine sediment
Cited by: 39
Author(s): Albert Müller, Claus Pelikan, Júlia R. de Rezende, Kenneth Wasmund, Martina Putz, Clemens Glombitza, Kasper Urup Kjeldsen, Bo Barker Jørgensen, Alexander Loy
Software Mentions: 2
Published: about 8 years ago

10.1111/1758-2229.12684

Newly designed 16S rRNA metabarcoding primers amplify diverse and novel archaeal taxa from the environment
Cited by: 80
Author(s): Mohammad Bahram, Sten Anslan, Falk Hildebrand, Peer Bork, Leho Tedersoo
Software Mentions: 2
Published: about 8 years ago

10.1186/1756-8935-7-5

The PEG13-DMR and brain-specific enhancers dictate imprinted expression within the 8q24 intellectual disability risk locus
Cited by: 43
Author(s): Franck Court, Cristina Camprubí, Cristina Vicente-García, Amy Guillaumet-Adkins, Ángela Sparago, Davide Seruggia, Juan Sandoval, Manel Esteller, Alex Martín‐Trujillo, Andrea Riccio, Lluı́s Montoliu, David Gabriel Monk
Software Mentions: 2
Published: over 12 years ago

10.1007/s10654-015-0039-0

Reference ranges and determinants of total hCG levels during pregnancy: the Generation R Study
Cited by: 83
Author(s): Tim I M Korevaar, Eric A.P. Steegers, Yolanda B. de Rijke, Sarah Schalekamp‐Timmermans, Willy Visser, Albert Hofman, Vincent W. V. Jaddoe, Henning Tiemeier, Theo J. Visser, Marco Medici, Robin P. Peeters
Software Mentions: 2
Published: over 11 years ago

10.1038/s41431-019-0563-6

TCTEX1D1 is a genetic modifier of disease progression in Duchenne muscular dystrophy
Cited by: 29
Author(s): Pietro Spitali, Irina Zaharieva, Stefan Böhringer, Monika Hiller, Amina Chaouch, Andreas Roos, C. Scotton, Mireille Claustres, Luca Bello, Craig McDonald, Eric P. Hoffman, Cinrg Investigators, Z. Koeks, H. Eka D. Suchiman, Sebahattin Çırak, Mariacristina Scoto, Mojgan Reza, Peter A C ‘t Hoen, Erik H. Niks, Sylvie Tuffery‐Giraud, Hanns Lochmüller, Alessandra Ferlini, Francesco Muntoni, Annemieke Aartsma‐Rus
Software Mentions: 2
Published: almost 7 years ago

10.12688/f1000research.25593.1

SARS-CoV-2 meta-interactome suggests disease-specific, autoimmune pathophysiologies and therapeutic targets
Cited by: 11
Author(s): Gianmarco Bellucci, Chiara Ballerini, Rosella Mechelli, Rachele Bigi, Virginia Rinaldi, Roberta Reniè, Maria Chiara Buscarinu, Sergio E. Baranzini, Lohith Madireddy, Giuseppe Matarese, Marco Salvetti, Giovanni Ristori
Software Mentions: 2
Published: about 6 years ago

10.12688/f1000research.53874.2

Rates and predictors of data and code sharing in the medical and health sciences: Protocol for a systematic review and individual participant data meta-analysis.
Cited by: 5
Author(s): Daniel G Hamilton, Hannah Fraser, Fiona Fidler, Steve McDonald, Anisa Rowhani-Farid, Kyungwan Hong, Matthew J. Page
Software Mentions: 2
Published: about 5 years ago

10.1002/2211-5463.12964

LMTK3 promotes tumorigenesis in bladder cancer via the ERK/MAPK pathway
Cited by: 15
Author(s): Tao Jiang, Xia Lu, Feiya Yang, Mingshuai Wang, Hua Yang, Nianzeng Xing
Software Mentions: 2
Published: about 6 years ago

10.1186/s12987-020-00208-1

Contribution of brain pericytes in blood–brain barrier formation and maintenance: a transcriptomic study of cocultured human endothelial cells derived from hematopoietic stem cells
Cited by: 27
Author(s): Marjolein Heymans, Ricardo Figueiredo, Lucie Dehouck, David Francisco, Yuichi Sano, Fumitaka Shimizu, Takashi Kanda, Rémy Bruggmann, Britta Engelhardt, Peter Winter, Fabien Gosselet, Maxime Culot
Software Mentions: 2
Published: over 6 years ago

10.3389/fnagi.2018.00155

Associations of MAP2K3 Gene Variants With Superior Memory in SuperAgers
Cited by: 19
Author(s): Matthew J. Huentelman, Ignazio S. Piras, Ashley L. Siniard, Matthew De Both, Ryan Richholt, Chris Balak, Pouya Jamshidi, Eileen H. Bigio, Sandra Weıntraub, Emmaleigh Loyer, Marek-Marsel Mesulam, Changiz Geula, Emily Rogalskı
Software Mentions: 2
Published: over 8 years ago

10.3389/fcell.2020.00629

A Novel Ten-Gene Signature Predicting Prognosis in Hepatocellular Carcinoma
Cited by: 52
Author(s): Taicheng Zhou, Zhihua Cai, Ning Ma, Wenzhuan Xie, Chan Gao, Mengli Huang, Yuezong Bai, Yangpeng Ni, Yunqiang Tang
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2020.00963

Correlation Analysis of Expression Profile and Quantitative iTRAQ-LC-MS/MS Proteomics Reveals Resistance Mechanism Against TuMV in Chinese Cabbage (Brassica rapa ssp. pekinensis)
Cited by: 10
Author(s): Shanwu Lyu, Liwei Gao, Rujia Zhang, Changwei Zhang, Xilin Hou
Software Mentions: 2
Published: about 6 years ago

10.3389/fgene.2017.00231

Using RNA Sequence and Structure for the Prediction of Riboswitch Aptamer: A Comprehensive Review of Available Software and Tools
Cited by: 29
Author(s): Deborah Antunes, Natasha Andressa Nogueira Jorge, Ernesto R. Caffarena, Fábio Passetti
Software Mentions: 2
Published: almost 9 years ago

10.3389/fgene.2020.00664

The Chromosome-Level Genome Assembly and Comprehensive Transcriptomes of the Razor Clam (Sinonovacula constricta)
Cited by: 15
Author(s): Yan Dong, Qifan Zeng, Jianfeng Ren, Hanhan Yao, Liyuan Lv, Lin He, Wenbin Ruan, Qinggang Xue, Zhenmin Bao, Shi Wang, Lin Zhang
Software Mentions: 2
Published: over 6 years ago

10.3389/fgene.2019.00274

Assessment of Autozygosity Derived From Runs of Homozygosity in Jinhua Pigs Disclosed by Sequencing Data
Cited by: 40
Author(s): Zhi-Hong Xu, Hao Sun, Zhe Zhang, Qi Zhao, Babatunde Shittu Olasege, Qiumeng Li, Yumei Yang, Peipei Ma, Xiangzhe Zhang, Qishan Wang, Yuchun Pan
Software Mentions: 2
Published: over 7 years ago

10.3389/fgene.2019.01163

Dissecting the Role of NF-κb Protein Family and Its Regulators in Rheumatoid Arthritis Using Weighted Gene Co-Expression Network
Cited by: 17
Author(s): Jamal S. M. Sabir, Abdelfatteh El Omri, Babajan Banaganapalli, Majed Al-Shaeri, Naser A. Alkenani, Mumdooh J. Sabir, Nahid H. Hajrah, Houda Zrelli, Łukasz Cieśla, Khalidah Khalid Nasser, Noor Ahmad Shaik, Muhummadh Khan
Software Mentions: 2
Published: almost 7 years ago

10.3389/fimmu.2020.01290

Sex-Specific Regulation of Gene Expression Networks by Surfactant Protein A (SP-A) Variants in Alveolar Macrophages in Response to Klebsiella pneumoniae
Cited by: 14
Author(s): Nithyananda Thorenoor, Yuka Imamura Kawasawa, Chintan K. Gandhi, Joanna Floros
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2021.662528

A Computational Systems Analyses to Identify Biomarkers and Mechanistic Link in Psoriasis and Cutaneous Squamous Cell Carcinoma
Cited by: 2
Author(s): Sidra Adil, Rehan Zafar Paracha, Salma Tariq, Maryum Nisar, Sadaf Ijaz, Amnah Siddiqa, Zamir Hussain, Afreenish Amir
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2016.01244

Autochthonous Bacterial Isolates Successfully Stimulate In vitro Peripheral Blood Leukocytes of the European Sea Bass (Dicentrarchus labrax)
Cited by: 16
Author(s): Ivona Mladineo, Ivana Bušelić, Jerko Hrabar, Ivana Radonić, Anamarija Vrbatović, Slaven Jozić, Željka Trumbić
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2016.00665

Identification of Free-Living and Particle-Associated Microbial Communities Present in Hadal Regions of the Mariana Trench
Cited by: 76
Author(s): Jonathan Tarn, Logan M. Peoples, Kevin Hardy, James Cameron, Douglas H. Bartlett
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2018.01948

Structural and Functional Alterations in the Microbial Community and Immunological Consequences in a Mouse Model of Antibiotic-Induced Dysbiosis
Cited by: 48
Author(s): Ying Shi, Lee Kellingray, Qixiao Zhai, Gwénaëlle Le Gall, Arjan Narbad, Jianxin Zhao, Hao Zhang, Wei Chen
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2020.02051

Screening the Olive Tree Phyllosphere: Search and Find Potential Antagonists Against Pseudomonas savastanoi pv. savastanoi
Cited by: 7
Author(s): Diogo Mina, José Alberto Pereira, Teresa Lino-Neto, Paula Baptista
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2016.00162

Characterization of Non-coding DNA Satellites Associated with Sweepoviruses (Genus Begomovirus, Geminiviridae) – Definition of a Distinct Class of Begomovirus-Associated Satellites
Cited by: 96
Author(s): Gloria Lozano, Helena P. Trenado, Elvira Fiallo‐Olivé, Dorys T. Chirinos, Francis Geraud-Pouey, R. W. Briddon, Jesús Navas‐Castillo
Software Mentions: 2
Published: over 10 years ago

10.3389/fmolb.2021.727481

Characterization of METTL7B to Evaluate TME and Predict Prognosis by Integrative Analysis of Multi-Omics Data in Glioma
Cited by: 8
Author(s): Xiaochuan Chen, Chao Li, Ying Liu, Shihong Wu, Wei Liu, Ting Lin, Miaomiao Li, Youliang Weng, Wanzun Lin, Sufang Qiu
Software Mentions: 2
Published: about 5 years ago

10.3389/fneur.2017.00064

Classification of Different Degrees of Disability Following Intracerebral Hemorrhage: A Decision Tree Analysis from VISTA-ICH Collaboration
Cited by: 6
Author(s): Thanh G. Phan, Jian Chen, Richard Beare, Henry Ma, Benjamin Clissold, John Ly, Velandai Srikanth
Software Mentions: 2
Published: over 9 years ago

10.3389/fnins.2017.00622

Visual Sensory Signals Dominate Tactile Cues during Docked Feeding in Hummingbirds
Cited by: 9
Author(s): Benjamin Goller, Paolo S. Segre, Kevin M. Middleton, Michael H. Dickinson, Douglas L. Altshuler
Software Mentions: 2
Published: almost 9 years ago

10.3389/fnins.2016.00576

Two Time Point MS Lesion Segmentation in Brain MRI: An Expectation-Maximization Framework
Cited by: 33
Author(s): Saurabh Jain, Annemie Ribbens, Diana M. Sima, Melissa Cambron, Jacques De Keyser, Chenyu Wang, Michael Barnett, Sabine Van Huffel, Frederik Maes, Dirk Smeets
Software Mentions: 2
Published: almost 10 years ago

10.3389/fonc.2020.625633

Zinc Finger Protein CTCF Regulates Extracellular Matrix (ECM)-Related Gene Expression Associated With the Wnt Signaling Pathway in Gastric Cancer
Cited by: 12
Author(s): Chenbin Liu, Linyi Deng, Jinrong Lin, Jianjun Zhang, Shu Pin Huang, Jinglin Zhao, Peipei Jin, Peiqing Xu, Peihong Ni, Dakang Xu, Le Ying, Yiqun Hu
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.01232

Gene Co-expression Is Distance-Dependent in Breast Cancer
Cited by: 20
Author(s): Diana García-Cortés, Guillermo de Anda-Jáuregui, Cristóbal Fresno, Enrique Hernández‐Lemus, Jesús Espinal-Enríquez
Software Mentions: 2
Published: over 6 years ago

10.3389/fonc.2021.621353

Multiple Omics Integration Reveals Key Circular RNAs in Hepatocellular Carcinoma
Cited by: 4
Author(s): Zili Huang, Xiuyan Huang, Jin Huang, Xinyu Huang, Yingbin Xu, Jian Zhou, Zhao–You Tang
Software Mentions: 2
Published: over 5 years ago

10.3389/fphys.2020.567675

A Novel Fibroblast Reporter Cell Line for in vitro Studies of Pulmonary Fibrosis
Cited by: 6
Author(s): Júlia Németh, Annika Schundner, Karsten Quast, Veronika Eva Winkelmann, Manfred Frick
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2021.665530

Metabolome-Based Genome-Wide Association Study Provides Genetic Insights Into the Natural Variation of Foxtail Millet
Cited by: 14
Author(s): Wei Wei, Shuangdong Li, Yixiang Wang, Bin Wang, Guangyu Fan, Qisen Zeng, Fang Zhao, Chunhai Xu, Xiaolei Zhang, Tang Tang, Xiaolei Feng, Jian Shi, Gaolei Shi, Weiqin Zhang, Guoliang Song, Huan Li, Rui Wang, Yali Zhang, Xinru Li, Dequan Wang, Wenying Zhang, Jingjing Pei, Xiaoming Wang, Zhihai Zhao
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2013.00456

Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes
Cited by: 27
Author(s): Stéphane Hacquard, Christine Delaruelle, Pascal Frey, Émilie Tisserant, Annegret Kohler, Sébastien Duplessis
Software Mentions: 2
Published: almost 14 years ago

10.3389/fpls.2020.00421

Early Evidence of Shifts in Alpine Summit Vegetation: A Case Study From Kashmir Himalaya
Cited by: 47
Author(s): Maroof Hamid, Anzar A. Khuroo, Akhtar H. Malik, Rameez Ahmad, Chandra Prakash Singh, Jiří Doležal, Shiekh Marifatul Haq
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2015.00594

New insights into plant glycoside hydrolase family 32 in Agave species
Cited by: 18
Author(s): Emmanuel Ávila de Dios, Alan Daniel Gomez Vargas, Maura L. Damián Santos, June Simpson
Software Mentions: 2
Published: about 11 years ago

10.3389/fpls.2012.00241

Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis)
Cited by: 10
Author(s): Ruth Grene, Curtis Klumas, Haktan Suren, Kuan Yang, Eva Collakova, Elijah Myers, Lenwood S. Heath, Jason A. Holliday
Software Mentions: 2
Published: almost 15 years ago

10.3389/fpsyg.2020.02260

Estimating CDMs Using the Slice-Within-Gibbs Sampler
Cited by: 2
Author(s): Xu Xin, Jimmy de la Torre, Jiwei Zhang, Jinxin Guo, Ning Shi
Software Mentions: 2
Published: about 6 years ago

10.3389/fpsyg.2018.00333

Association Between Fear and Beauty Evaluation of Snakes: Cross-Cultural Findings
Cited by: 34
Author(s): Eva Landová, Natavan Bakhshaliyeva, Markéta Janovcová, Šárka Peléšková, Mesma Suleymanova, Jakub Polák, Akif Guliev, Daniel Frynta
Software Mentions: 2
Published: over 8 years ago

10.3389/fpsyg.2019.02350

Investigating How Parental Instructions and Protective Responses Mediate the Relationship Between Parental Psychological Flexibility and Pain-Related Behavior in Adolescents With Chronic Pain: A Daily Diary Study
Cited by: 8
Author(s): Melanie Beeckman, Laura E. Simons, Sean Hughes, Tom Loeys, Liesbet Goubert
Software Mentions: 2
Published: about 7 years ago

10.3389/fvets.2021.637622

MicroRNA Expression Changes and Integrated Pathways Associated With Poor Outcome in Canine Osteosarcoma
Cited by: 3
Author(s): Deanna D. Dailey, Ann Hess, Gerrit J. Bouma, Dawn L. Duval
Software Mentions: 2
Published: over 5 years ago

10.1186/s12983-019-0313-1

Nest initiation and flooding in response to season and semi-lunar spring tides in a ground-nesting shorebird
Cited by: 10
Author(s): Silvia Plaschke, Martin Bulla, Medardo Cruz‐López, Salvador Gómez del Ángel, Clemens Küpper
Software Mentions: 2
Published: over 7 years ago

10.1534/g3.113.005769

Genome-Wide Patterns of Codon Bias Are Shaped by Natural Selection in the Purple Sea Urchin, Strongylocentrotus purpuratus
Cited by: 24
Author(s): Kord M. Kober, Grant H. Pogson
Software Mentions: 2
Published: over 13 years ago

10.1534/g3.117.300406

A Bayesian Genomic Regression Model with Skew Normal Random Errors
Cited by: 6
Author(s): Paulino Pérez‐Rodríguez, Rocío Acosta-Pech, Sergio Pérez-Elizalde, Ciro Velasco Cruz, Javier Suárez Espinosa, J. Crossa
Software Mentions: 2
Published: over 8 years ago

10.3390/genes6030577

Alu Elements as Novel Regulators of Gene Expression in Type 1 Diabetes Susceptibility Genes?
Cited by: 7
Author(s): Simranjeet Kaur, Flemming Pociot
Software Mentions: 2
Published: over 11 years ago

10.3390/genes8120359

Transcriptional and Hormonal Regulation of Weeping Trait in Salix matsudana
Cited by: 12
Author(s): Juanjuan Liu, Yan‐Fei Zeng, Peiyao Yan, Caiyun He, Jianguo Zhang
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-11508-2

Computational Cell Cycle Profiling of Cancer Cells for Prioritizing FDA-Approved Drugs with Repurposing Potential
Cited by: 25
Author(s): Yu‐Chen Lo, Silvia Senese, Bryan France, Ankur A. Gholkar, Robert Damoiseaux, Jorge Z. Torres
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-017-16673-y

A Novel Communication Value Task Demonstrates Evidence of Response Bias in Cases with Presbyacusis
Cited by: 3
Author(s): Mark A. Eckert, Kenneth I. Vaden, Susan Teubner‐Rhodes, Brandon S. Bentzley
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-017-16627-4

A flexible ontology for inference of emergent whole cell function from relationships between subcellular processes
Cited by: 24
Author(s): Jens Hansen, David Meretzky, Simeneh Woldesenbet, Gustavo Stolovitzky, Ravi Iyengar
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-018-22471-x

A Prognostic Nomogram for Postoperative Bone Remodeling in Patients with ADDWoR
Cited by: 13
Author(s): Xiaohan Liu, Pei Shen, Xiangyu Wang, Sam Zhang, Jiawei Zheng, Yang Chen
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-25826-6

Transcriptome and Co-Expression Network Analyses Identify Key Genes Regulating Nitrogen Use Efficiency in Brassica juncea L.
Cited by: 31
Author(s): Parul Goel, Nitesh Kumar Sharma, Monika Bhuria, Vishal Sharma, Rashi Chauhan, Shivalika Pathania, Mohit Kumar Swarnkar, Vandna Chawla, Vishal Acharya, Ravi Shankar, Anil Kumar Singh
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-019-39040-5

Removing the no-analogue bias in modern accelerated tree growth leads to stronger medieval drought
Cited by: 15
Author(s): Tobias Scharnweber, Karl Uwe Heußner, Marko Smiljanić, Ingo Heinrich, Marieke van der Maaten‐Theunissen, Ernst van der Maaten, Thomas Struwe, Allan Buras, Martin Wilmking
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-40834-w

Genetic overlap between birthweight and adult cardiometabolic diseases has implications for genomic medicine
Cited by: 5
Author(s): Fasil Tekola‐Ayele, Anthony Lee, Tsegaselassie Workalemahu, Wei Emma Zhang, Deepika Shrestha, Azmeraw T. Amare, Marion Ouidir
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-43036-6

Long-term trends, current status, and transitions of water quality in Chesapeake Bay
Cited by: 48
Author(s): Lawrence W. Harding, Michael E. Mallonee, Elgin S. Perry, W. David Miller, Jason E. Adolf, Charles L. Gallegos, Hans W. Paerl
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-48227-9

Metabolomic characterization of myocardial ischemia-reperfusion injury in ST-segment elevation myocardial infarction patients undergoing percutaneous coronary intervention
Cited by: 30
Author(s): Arun Surendran, Michel Aliani, Amir Ravandi
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-019-49836-0

Temporal changes in transcriptome profile provide insights of White Spot Syndrome Virus infection in Litopenaeus vannamei
Cited by: 27
Author(s): Luca Peruzza, M. S. Shekhar, Karthik Kumar, A. Swathi, K. Karthic, Chris Hauton, K.K. Vijayan
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-020-61017-y

Transcriptomic and computational analysis identified LPA metabolism, KLHL14 and KCNE3 as novel regulators of Epithelial-Mesenchymal Transition
Cited by: 7
Author(s): Valeria Di Lollo, Angelo Canciello, Massimiliano Orsini, Nicola Bernabò, Massimo Ancora, Marta Di Federico, Valentina Curini, Mauro Mattioli, Valentina Russo, Annunziata Mauro, Cesare Cammà, Barbara Barboni
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-63538-y

Phenology of reproductive condition varies with age and spring weather conditions in male Myotis daubentonii and M. nattereri (Chiroptera: Vespertilionidae)
Cited by: 12
Author(s): Danielle M. Linton, David W. Macdonald
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-64031-2

Common genetic variation in obesity, lipid transfer genes and risk of Metabolic Syndrome: Results from IDEFICS/I.Family study and meta-analysis
Cited by: 21
Author(s): Rajini Nagrani, Ronja Foraita, Francesco Gianfagna, Licia Iacoviello, Staffan Mårild, Nathalie Michels, Dénes Molnár, Luís A. Moreno, Paola Russo, Toomas Veidebaum, Wolfgang Ahrens, Manuela Marron
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-67874-x

Genome-wide mapping and allelic fingerprinting provide insights into the genetics of resistance to wheat stripe rust in India, Kenya and Mexico
Cited by: 7
Author(s): Philomin Juliana, Ravi P. Singh, Julio Huerta Espino, Sridhar Bhavani, M. S. Randhawa, Uttam Kumar, Arun Kumar Joshi, Pradeep Kumar Bhati, Héctor Eduardo Villaseñor Mir, C. N. Mishra, Gyanendra Pratap Singh
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-77547-4

Immunoinformatic design of a COVID-19 subunit vaccine using entire structural immunogenic epitopes of SARS-CoV-2
Cited by: 41
Author(s): Esmaeil Behmard, Bijan Soleymani, Ali Najafi, Ebrahim Barzegari
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-81240-5

Capture and return of sexual genomes by hybridogenetic frogs provides clonal genome enrichment in a sexual species
Cited by: 4
Author(s): Marie Doležálková-Kaštánková, Glib Mazepa, Daniel L. Jeffries, Nicolas Perrin, Marcela Plötner, Jörg Plötner, Gaston‐Denis Guex, Peter Mikulíček, Albert J. Poustka, José Horacio Grau, Lukáš Choleva
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-85376-2

Drivers and constraints on offshore foraging in harbour seals
Cited by: 9
Author(s): Heather Vance, Sascha K. Hooker, Lonnie Mikkelsen, Abbo van Neer, Jonas Teilmann, Ursula Siebert, Mark Johnson
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-98536-1

Dissection of the bone marrow microenvironment in hairy cell leukaemia identifies prognostic tumour and immune related biomarkers
Cited by: 6
Author(s): Rachel Koldej, Ashvind Prabahran, Chin Wee Tan, Ashley P Ng, Melissa J. Davis, David Ritchie
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-99396-5

A prediction model using 2-propanol and 2-butanone in urine distinguishes breast cancer
Cited by: 3
Author(s): Shoko Kure, Sera Satoi, T Kitayama, Yuta Nagase, Nobuo Nakano, Marina Yamada, Noboru Uchiyama, Satoshi Miyashita, S. Iida, Hiroyuki Takei, Masao Miyashita
Software Mentions: 2
Published: about 5 years ago

10.3390/s150101825

Inertial Sensor Self-Calibration in a Visually-Aided Navigation Approach for a Micro-AUV
Cited by: 21
Author(s): Francisco Bonin‐Font, Miquel Massot-Campos, Pep Lluis Negre-Carrasco, Gabriel Oliver-Codina, Joan Pau Beltrán
Software Mentions: 2
Published: almost 12 years ago

10.3390/s21113927

Application of Low-Cost MEMS Spectrometers for Forest Topsoil Properties Prediction
Cited by: 4
Author(s): Felix Thomas, Rainer Petzold, Carina Becker, Ulrike Werban
Software Mentions: 2
Published: over 5 years ago

10.1007/s00127-020-01843-7

Network structure of depression symptomology in participants with and without depressive disorder: the population-based Health 2000–2011 study
Cited by: 16
Author(s): Christian Hakulinen, Eiko I. Fried, Laura Pulkki‐Råback, Marianna Virtanen, Jaana Suvisaari, Marko Elovainio
Software Mentions: 2
Published: over 6 years ago

10.1186/s40064-016-2809-x

SentiHealth: creating health-related sentiment lexicon using hybrid approach
Cited by: 46
Author(s): Muhammad Zubair Asghar, Shakeel Ahmad, Maria Qasim, Syeda Rabail Zahra, Fazal Masud Kundi
Software Mentions: 2
Published: over 10 years ago

10.1038/tp.2016.268

The early growth response protein 1-miR-30a-5p-neurogenic differentiation factor 1 axis as a novel biomarker for schizophrenia diagnosis and treatment monitoring
Cited by: 47
Author(s): S Liu, F Zhang, Yin Yao Shugart, Lei Yang, X Li, Z Liu, Ning Sun, Chunxia Yang, Xiangjie Guo, Jie Shi, L Wang, Li Cheng, K Zhang, Taisheng Yang, Yong Xu
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41398-020-01097-6

Alterations in acylcarnitines, amines, and lipids inform about the mechanism of action of citalopram/escitalopram in major depression
Cited by: 39
Author(s): Siamak MahmoudianDehkordi, Ahmed T. Ahmed, Sudeepa Bhattacharyya, Xianlin Han, Rebecca Baillie, Matthias Arnold, Michelle Skime, Lisa St. John-Williams, M. Arthur Moseley, J. Will Thompson, Gregory Louie, Patricio Riva‐Posse, W. Edward Craighead, William M. McDonald, Ranga Krishnan, A. John Rush, Mark A. Frye, Boadie W. Dunlop, Richard M. Weinshilboum, Rima Kaddurah‐Daouk, Rima Kaddurah‐Daouk, A. John Rush, Jessica D. Tenenbaum, Arthur Moseley, Will J. Thompson, Gregory Louie, Colette Blach, Siamak Mahmoudiandehkhordi, Rebecca Baillie, Xianlin Han, Sudeepa Bhattacharyya, Mark A. Frye, Richard M. Weinshilboum, Ahmed Ahmed, Drew Neavin, Duan Liu, Michelle Skime, Piero Rinaldo, Oliver Fiehn, Christopher Brydges, Helen S. Mayberg, Ki Sueng Choi, Jung-Ho Cha, Gabi Kastenmüller, Matthias Arnold, Elisabeth B. Binder, Janine Knauer-Arloth, Alejo J. Nevado‐Holgado, Lei Shi, Boadie W. Dunlop, Ed Craighead, William M. McDonald, Patricio Riva Posse, Brenda W. J. H. Penninx, Yuri Milaneschi, Rick Jansen, Ranga Krishnan
Software Mentions: 2
Published: over 5 years ago

10.1186/s40246-019-0202-x

Shared genetic underpinnings of childhood obesity and adult cardiometabolic diseases
Cited by: 17
Author(s): Fasil Tekola‐Ayele, Anthony Lee, Tsegaselassie Workalemahu, Katy Sánchez-Pozos
Software Mentions: 2
Published: over 7 years ago

10.1038/s41396-018-0214-x

Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus
Cited by: 45
Author(s): Anton Lavrinienko, Tapio Mappes, Eugene Tukalenko, Timothy A. Mousseau, Anders Pape Møller, Rob Knight, James T. Morton, Luke R. Thompson, Phillip C. Watts
Software Mentions: 2
Published: over 8 years ago

10.1186/s12966-019-0892-4

Isotemporal substitution of inactive time with physical activity and time in bed: cross-sectional associations with cardiometabolic health in the PREDIMED-Plus study
Cited by: 22
Author(s): Aina María Galmés-Panadés, Verónica Varela-Mato, Jadwiga Konieczna, Julia Wärnberǵ, Miguel Ángel Martínez‐González, Dolores Corella, Helmut Schröder, Jesús Vioque, Ángel M. Alonso‐Gómez, J. Alfredo Martínéz, Luís Serra-Majem, Ramón Estruch, Francisco J. Tinahones, José Lapetra, Xavier Pintó, Josep A. Tur, Antonio García‐Rios, Blanca Riquelme-Gallego, José J. Gaforio, Pilar Matía‐Martín, Lidia Daimiel, Rafael Manuel Micó Pérez, Josep Vidal, Clotilde Vázquez, Emilio Ros, Ana García‐Arellano, Andrés Díaz‐López, Eva M. Asensio, Olga Castañer, Francisca Fiol, Luis Alfredo Mira-Castejón, Anai Moreno Rodríguez, Juan Carlos Benavente Marín, Itziar Abete, Laura Tomaino, Rosa Casas, F. Javier Barón López, José Carlos Fernández-García, José Manuel Santos‐Lozano, Ana Galera, Catalina M. Mascaró, Cristina Razquín, Christopher Papandreou, Olga Portolés, Karla Alejandra Pérez-Vega, Miguel Fiol, Laura Compañ-Gabucio, Jessica Vaquero-Luna, Miguel Ruiz‐Canela, Nerea Becerra‐Tomás, Montserrat Fitó, Dora Romaguera
Software Mentions: 2
Published: almost 7 years ago

10.1155/2016/8346198

Bioinformatics Analysis of the Human Surfaceome Reveals New Targets for a Variety of Tumor Types
Cited by: 13
Author(s): André Fonseca, Vandeclécio L. da Silva, Maira Christina Marques Fonseca, Isabella Tanus Job e Meira, Thayná E. da Silva, José Eduardo Kroll, André M. Ribeiro-dos-Santos, Cléber R. Freitas, Raimundo Furtado, Jorge E. de Souza, Beatriz Stransky, Sandro J. de Souza
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12942-015-0027-3

Assessing opportunities for physical activity in the built environment of children: interrelation between kernel density and neighborhood scale
Cited by: 14
Author(s): Christoph Buck, Thomas Kneib, Tobias Tkaczick, Kenn Konstabel, Iris Pigeot
Software Mentions: 2
Published: almost 11 years ago

10.1007/s00414-020-02493-9

Aquaporin-1 and aquaporin-9 gene variations in sudden infant death syndrome
Cited by: 6
Author(s): Siri Hauge Opdal, Linda Ferrante, Torleiv O. Rognum, Arne Stray-Pedersen
Software Mentions: 2
Published: almost 6 years ago

10.1155/2012/201389

Diversity across Seasons of CulturablePseudomonasfrom a Desiccation Lagoon in Cuatro Cienegas, Mexico
Cited by: 20
Author(s): Alejandra Rodríguez‐Verdugo, Valeria Souza, Luis E. Eguiarte, Ana E. Escalante
Software Mentions: 2
Published: almost 15 years ago

10.22038/ijbms.2020.43535.10224

Spermatogonia apoptosis induction as a possible mechanism of Toxoplasma gondii-induced male infertility.
Cited by: 1
Author(s): Jasem Saki, Mohamad Sabaghan, Reza Arjmand, Ali Teimoori, Mohammad Rashno, Ghasem Saki, Saeedeh Shojaee
Software Mentions: 2
Published: about 6 years ago

10.2196/24205

Transforming a Patient Registry Into a Customized Data Set for the Advanced Statistical Analysis of Health Risk Factors and for Medication-Related Hospitalization Research: Retrospective Hospital Patient Registry Study
Cited by: 5
Author(s): Zhivko Taushanov, Henk Verloo, Boris Wernli, Saviana Di Giovanni, Armin von Gunten, Filipa Pereira
Software Mentions: 2
Published: over 5 years ago

10.3892/ol.2014.2613

Pathogenesis analysis of pituitary adenoma based on gene expression profiling
Cited by: 9
Author(s): Weimin Wang, Zhiming Xu, Li Fu, Wei Liu, Xingang Li
Software Mentions: 2
Published: about 12 years ago

10.7554/eLife.70676

The roles of history, chance, and natural selection in the evolution of antibiotic resistance
Cited by: 17
Author(s): Alfonso Santos-López, C. W. Marshall, Allison L Haas, Caroline B. Turner, Javier Rasero, Vaughn S. Cooper
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.61036

Deletion of Stk11 and Fos in mouse BLA projection neurons alters intrinsic excitability and impairs formation of long-term aversive memory
Cited by: 5
Author(s): David Levitan, Chenghao Liu, Tracy Yang, Yasuyuki Shima, Jian-You Lin, Joseph Wachutka, Yasmin Marrero, Ramin Ali Marandi Ghoddousi, Eduardo da Veiga Beltrame, Troy A. Richter, Donald B. Katz, Sacha B. Nelson
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21165649

Appraising the Genetic Architecture of Kernel Traits in Hexaploid Wheat Using GWAS
Cited by: 16
Author(s): Muhammad Ali, Weicheng Hu, Zhaoyang Li, Jianguo Li, Guosheng Xie, Jibin Wang, Lingqiang Wang
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21186895

Novel Gene Rearrangement and the Complete Mitochondrial Genome of Cynoglossus monopus: Insights into the Envolution of the Family Cynoglossidae (Pleuronectiformes)
Cited by: 6
Author(s): Chen Wang, Hao Chen, Silin Tian, Cheng Yang, Xiao Chen
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms22168789

TF–RBP–AS Triplet Analysis Reveals the Mechanisms of Aberrant Alternative Splicing Events in Kidney Cancer: Implications for Their Possible Clinical Use as Prognostic and Therapeutic Biomarkers
Cited by: 5
Author(s): Meng Xiao He, Fuyan Hu
Software Mentions: 2
Published: about 5 years ago

10.2196/jmir.9644

Online Information Infrastructure Increases Inter-Rater Reliability of Medical Coders: A Quasi-Experimental Study (Preprint)
Cited by: 6
Author(s): Julian Varghese, Sarah Sandmann, Martin Dugas
Software Mentions: 2
Published: almost 9 years ago

10.1186/1869-5760-3-32

Ocular tolerability and efficacy of intravitreal and subconjunctival injections of sirolimus in patients with non-infectious uveitis: primary 6-month results of the SAVE Study
Cited by: 83
Author(s): Quan Dong Nguyen, Mohamed Ibrahim, Anthony Watters, Millena Bittencourt, Jithin Yohannan, Yasir J. Sepah, James P. Dunn, Joel Naor, Naveed Shams, Ovais Shaikh, Henry A. Leder, V. Diana
Software Mentions: 2
Published: almost 14 years ago

10.18632/oncotarget.15136

PIGN gene expression aberration is associated with genomic instability and leukemic progression in acute myeloid leukemia with myelodysplastic features
Cited by: 9
Author(s): Emmanuel K. Teye, Abigail Sido, Ping Xin, Niklas Finnberg, Prashanth Gokare, Yuka Imamura Kawasawa, Anna C. Salzberg, Sara Shimko, Michael G. Bayerl, W. Christopher Ehmann, David F. Claxton, Witold B. Rybka, Joseph J. Drabick, Hong Gang Wang, Thomas Abraham, Wafik S. El‐Deiry, Robert A. Brodsky, Raymond J. Hohl, Jeffrey J. Pu
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.16221

Unique properties of thymic antigen-presenting cells promote epigenetic imprinting of alloantigen-specific regulatory T cells
Cited by: 20
Author(s): Garima Garg, Eirini Nikolouli, Matthias Hardtke‐Wolenski, Aras Toker, Naganari Ohkura, Michael Beckstette, Takahisa Miyao, Robert Geffers, Stefan Floess, Norbert Gerdes, Esther Lutgens, Anke Osterloh, Shohei Hori, Shimon Sakaguchi, Elmar Jaeckel, Jochen Huehn
Software Mentions: 2
Published: over 9 years ago

10.18632/oncotarget.24973

Comprehensive genomic transcriptomic tumor-normal gene panel analysis for enhanced precision in patients with lung cancer
Cited by: 9
Author(s): Shahrooz Rabizadeh, Chad Garner, J. Zachary Sanborn, Stephen C. Benz, Sandeep K. Reddy, Patrick Soon‐Shiong
Software Mentions: 2
Published: over 8 years ago

Projects: pypi: package

Science Score: 65/100

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Papers Mentioning package 1,300