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Projects: pypi: package

https://packages.ecosyste.ms/registries/pypi.org/packages/package

package is a package to package your package
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Latest release: over 15 years ago
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Science Score: 65/100
Starting Score: 100 points
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Very Likely Science (65)

Papers Mentioning package 1,300

10.1186/1471-2164-14-716
Global regulatory architecture of human, mouse and rat tissue transcriptomes
Cited by: 19
Author(s): Ajay Prasad, Suchitra Suresh Kumar, Christophe Dessimoz, Stefan Bleuler, Oliver Laule, Tomás Hrúz, Wilhelm Gruissem, Philip Zimmermann
Software Mentions: 2
Published: almost 13 years ago
10.1186/1471-2164-14-226
Transcriptional and epigenetic signatures of zygotic genome activation during early drosophila embryogenesis
Cited by: 13
Author(s): Élodie Darbo, Carl Herrmann, Thomas Lecuit, Denis Thieffry, Jacques van Helden
Software Mentions: 2
Published: over 13 years ago
10.1186/s12864-019-5564-x
High-resolution population structure and runs of homozygosity reveal the genetic architecture of complex traits in the Lipizzan horse
Cited by: 29
Author(s): Gertrud Grilz-Seger, Thomas Druml, Markus Neuditschko, Max Dobretsberger, Michaela Horná, Gottfried Brem
Software Mentions: 2
Published: over 7 years ago
10.1186/s12864-015-2255-0
Population genomics of pearl millet (Pennisetum glaucum (L.) R. Br.): Comparative analysis of global accessions and Senegalese landraces
Cited by: 41
Author(s): Zhenbin Hu, Bassirou Mbacké, Ramasamy Perumal, Mame Codou Guèye, Ousmane Sy, Sophie Bouchet, P. V. Vara Prasad, Geoffrey P. Morris
Software Mentions: 2
Published: over 10 years ago
10.1186/1471-2164-14-704
Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
Cited by: 92
Author(s): Sebastian Baumgarten, Till Bayer, Manuel Aranda, Yi Jin Liew, Adrian R. Carr, Gos Micklem, Christian R. Voolstra
Software Mentions: 2
Published: almost 13 years ago
10.1186/1471-2164-9-619
Transgenic increases in seed oil content are associated with the differential expression of novel Brassica-specific transcripts
Cited by: 54
Author(s): Nishant Sharma, Mitchell Anderson, Arvind Kumar, Zhang Yan, E. Michael Giblin, Suzanne R. Abrams, L. Irina Zaharia, David C. Taylor, Pierre R. Fobert
Software Mentions: 2
Published: over 17 years ago
10.1186/1471-2164-10-S1-S19
A distribution-free convolution model for background correction of oligonucleotide microarray data
Cited by: 15
Author(s): Zhongxue Chen, Monnie McGee, Qingzhong Liu, Megan Kong, Youping Deng, Richard H. Scheuermann
Software Mentions: 2
Published: about 17 years ago
10.1186/s12864-015-2066-3
Patterns of gene expression and DNA methylation in human fetal and adult liver
Cited by: 24
Author(s): Susan M. Huse, Philip A. Gruppuso, Kim Boekelheide, Jennifer Sanders
Software Mentions: 2
Published: almost 11 years ago
10.1186/1471-2164-11-369
Comparative genomics of the family Vibrionaceae reveals the wide distribution of genes encoding virulence-associated proteins
Cited by: 14
Author(s): Timothy Lilburn, Jianying Gu, Hong-Hong Cai, Yufeng Wang
Software Mentions: 2
Published: over 16 years ago
10.1186/s12864-016-2929-2
Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thaliana
Cited by: 72
Author(s): Jiapei Yuan, Ye Zhang, Jinsong Dong, Yuzhe Sun, Boon Leong Lim, Dong Liu, Zhi John Lu
Software Mentions: 2
Published: about 10 years ago
10.1186/1471-2164-7-75
Global gene expression analyses of hematopoietic stem cell-like cell lines with inducible Lhx2 expression
Cited by: 23
Author(s): Karin Richter, Valtteri Wirta, Lina Dahl, Sara Bruce, Joakim Lundeberg, Leif Carlsson, Cecilia Williams
Software Mentions: 2
Published: over 20 years ago
10.1186/s12864-021-07741-9
Transcriptome profiling of the diaphragm in a controlled mechanical ventilation model reveals key genes involved in ventilator-induced diaphragmatic dysfunction
Cited by: 6
Author(s): Ruining Liu, Gang Li, Hongwei Ma, Xianlong Zhou, Pengcheng Wang, Yan Zhao
Software Mentions: 2
Published: about 5 years ago
10.1186/1471-2164-7-250
The SNARE protein family of Leishmania major
Cited by: 37
Author(s): Sébastien Besteiro, Graham H. Coombs, Jeremy C. Mottram
Software Mentions: 2
Published: almost 20 years ago
10.1186/s12913-019-4866-7
Statistical process monitoring to improve quality assurance of inpatient care
Cited by: 7
Author(s): Lena Hubig, Nicholas Lack, Ulrich Mansmann
Software Mentions: 2
Published: over 6 years ago
10.1186/s12920-020-00856-0
A predictive model for assessing prognostic risks in gastric cancer patients using gene expression and methylation data
Cited by: 1
Author(s): Dan Luo, Qingling Yang, Haibo Wang, Mao Tan, Yanlei Zou, Jian Liu
Software Mentions: 2
Published: over 5 years ago
10.1186/1755-8794-1-34
Influence of monolayer, spheroid, and tumor growth conditions on chromosome 3 gene expression in tumorigenic epithelial ovarian cancer cell lines
Cited by: 22
Author(s): Neal Cody, Magdalena Zietarska, Ali Filali‐Mouhim, Diane Provencher, Anne-Marie Mes-Masson, Patricia N. Tonin
Software Mentions: 2
Published: about 18 years ago
10.1186/s12920-018-0454-7
Development of somatic mutation signatures for risk stratification and prognosis in lung and colorectal adenocarcinomas
Cited by: 9
Author(s): Mark Menor, Yong Zhu, Yu Wang, Jicai Zhang, Bin Jiang, Youping Deng
Software Mentions: 2
Published: over 7 years ago
10.1186/s12920-015-0090-4
BMP2 response pattern in human lung fibroblasts predicts outcome in lung adenocarcinomas
Cited by: 15
Author(s): Michal Rajski, Annika Sääf, Martin Buess
Software Mentions: 2
Published: over 11 years ago
10.1186/s12920-016-0172-y
Saliva DNA quality and genotyping efficiency in a predominantly elderly population
Cited by: 23
Author(s): Harini V. Gudiseva, Mark Hansen, Linda S. Gutierrez, David W. Collins, Jie He, Lana D. Verkuil, Ian Danford, Anna Sagaser, Anita S. Bowman, Rebecca Salowe, Prithvi S. Sankar, Eydie Miller-Ellis, Amanda Lehman, Joan M. O’Brien
Software Mentions: 2
Published: over 10 years ago
10.1186/1755-8794-5-47
Histotype-specific copy-number alterations in ovarian cancer
Cited by: 37
Author(s): Ruby Yun‐Ju Huang, Geng Bo Chen, Noriomi Matsumura, Hung Cheng Lai, Seiichi Mori, Jingjing Li, Ming Keong Wong, Ikuo Konishi, Jean Paul Thiery, Liang Kee Goh
Software Mentions: 2
Published: almost 14 years ago
10.1186/s12870-020-02403-6
Effect of trait’s expression level on single-step genomic evaluation of resistance to Dothistroma needle blight
Cited by: 13
Author(s): Jaroslav Klápště, Heidi S. Dungey, Natalie Graham, Emily Telfer
Software Mentions: 2
Published: over 6 years ago
10.1186/s12870-021-02969-9
The physiological and molecular mechanisms of N transfer in Eucalyptus and Dalbergia odorifera intercropping systems using root proteomics
Cited by: 6
Author(s): Xianyu Yao, Lusheng Liao, Yongzhen Huang, Ge Fan, Mei Yang, Shaoming Ye
Software Mentions: 2
Published: over 5 years ago
10.1186/s12888-019-2110-y
HELP@APP: development and evaluation of a self-help app for traumatized Syrian refugees in Germany – a study protocol of a randomized controlled trial
Cited by: 25
Author(s): Johannes Golchert, Susanne Röhr, Franziska Berg, Thomas Grochtdreis, Rahel Hoffmann, Franziska Jung, Michaela Nagl, Anna Plexnies, Anna Renner, Hans‐Helmut König, Anette Kersting, Steffi G. Riedel‐Heller
Software Mentions: 2
Published: over 7 years ago
10.1186/s12888-015-0559-x
Skating on thin ice: pragmatic prescribing for medication refractory schizophrenia
Cited by: 14
Author(s): Derek K. Tracy, Dan W. Joyce, S. Sarkar, Maria Jesus Mateos Fernandez, Sukhwinder S. Shergill
Software Mentions: 2
Published: about 11 years ago
10.1186/s13104-015-1089-9
An automated method for efficient, accurate and reproducible construction of RNA-seq libraries
Cited by: 5
Author(s): Maria Tsompana, Sujith A. Valiyaparambil, Jonathan Bard, Brandon Marzullo, Norma J. Nowak, Michael Buck
Software Mentions: 2
Published: over 11 years ago
10.1186/1756-0500-7-278
DNA methylation signatures in cord blood associated with maternal gestational weight gain: results from the ALSPAC cohort
Cited by: 64
Author(s): Eva Morales, Alix Groom, Debbie A. Lawlor, Caroline L Relton
Software Mentions: 2
Published: over 12 years ago
10.1186/s13104-021-05750-1
DArT-based evaluation of soybean germplasm from Polish Gene Bank
Cited by: 8
Author(s): E. Czembor, Jerzy H. Czembor, Radosław Suchecki, Nathan S. Watson-Haigh
Software Mentions: 2
Published: about 5 years ago
10.1186/s12918-017-0473-6
Informed walks: whispering hints to gene hunters inside networks’ jungle
Cited by: 3
Author(s): Marilena M. Bourdakou, George M. Spyrou
Software Mentions: 2
Published: almost 9 years ago
10.1007/s10519-015-9723-9
Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset
Cited by: 24
Author(s): Camelia C. Minică, Conor V. Dolan, Jouke‐Jan Hottenga, René Pool, Iryna O. Fedko, Hamdi Mbarek, Charlotte Huppertz, Meike Bartels, Dorret I. Boomsma, Jacqueline M. Vink
Software Mentions: 2
Published: over 11 years ago
10.1186/s13040-014-0032-2
Integrative genomics and transcriptomics analysis of human embryonic and induced pluripotent stem cells
Cited by: 2
Author(s): Kirsti Laurila, Reija Autio, Lingjia Kong, Elisa Närvä, Samer M.I. Hussein, Timo Otonkoski, Riitta Lahesmaa, Harri Lähdesmäki
Software Mentions: 2
Published: over 11 years ago
10.3897/BDJ.8.e50500
Host records and geographical distribution of Corynosoma magdaleni, C. semerme and C. strumosum (Acanthocephala: Polymorphidae)
Cited by: 6
Author(s): Sonja Leidenberger, Sven Boström, Matthew T. Wayland
Software Mentions: 2
Published: over 6 years ago
10.1093/bioinformatics/btaa987
Ultra-fast scalable estimation of single-cell differentiation potency from scRNA-Seq data
Cited by: 9
Author(s): Andrew E. Teschendorff, Alok Kumar Maity, Hao Xue, Weiyan Chen, Matthias Lechner
Software Mentions: 2
Published: almost 6 years ago
10.1042/BSR20192048
Expression profiles of genes associated with inflammatory responses and oxidative stress in lung after heat stroke
Cited by: 11
Author(s): Zhaoyu Liu, Jitao Chen, La Hu, Ming Li, Min Liang, Jianan Chen, Hai Lin, Zicheng Zeng, Weilun Yin, Zhijie Dong, Jian Weng, Wenqian Yao, Yi Gao
Software Mentions: 2
Published: about 6 years ago
10.1038/s41408-020-0322-5
Combining gene expression profiling and machine learning to diagnose B-cell non-Hodgkin lymphoma
Cited by: 19
Author(s): Victor Bobée, Fanny Drieux, Vinciane Marchand, Vincent Sater, Liana Veresezan, Jean‐Michel Picquenot, Pierre‐Julien Viailly, Marie‐Delphine Lanic, Mathieu Viennot, Élodie Bohers, Lucie Obéric, Christiane Copie‐Bergman, Thierry Jo Molina, Philippe Gaulard, Corinne Haı̈oun, Gilles Salles, Hervé Tilly, Fabrice Jardin, Philippe Ruminy
Software Mentions: 2
Published: over 6 years ago
10.1186/s40529-018-0244-8
Nuclear and chloroplast DNA phylogeography suggests an Early Miocene southward expansion of Lithocarpus (Fagaceae) on the Asian continent and islands
Cited by: 7
Author(s): Chia‐Ling Yang, Yu Chung Chiang, Bing Huang, Li Ju, Pei Chun Liao
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41416-019-0491-9
Plasma total cell-free DNA is a prognostic biomarker of overall survival in metastatic solid tumour patients
Cited by: 10
Author(s): Ida Viller Tuxen, Lise Barlebo Ahlborn, Morten Mau-Søerensen, Kristoffer Staal Rohrberg, Finn C. Nielsen, Olga Oestrup, Christina Westmose Yde, I.R. Vogelius, Ulrik Lassen
Software Mentions: 2
Published: about 7 years ago
10.1093/brain/awx341
Structural brain abnormalities in the common epilepsies assessed in a worldwide ENIGMA study
Cited by: 314
Author(s): Christopher D. Whelan, André Altmann, Juan A. Botía, Neda Jahanshad, Derrek P. Hibar, Julie Absil, Saud Alhusaini, Marina Alvim, Pia Auvinen, Emanuele Bartolini, Felipe P. G. Bergo, Tauana Bernardes, Karen Blackmon, Bárbara Braga, Maria Eugenia Caligiuri, Anna Calvo, Sarah Carr, Jian Chen, Shuai Chen, Andrea Cherubini, Philippe David, Martin Domín, Sonya Foley, Wendy Caroline de Souza Costa França, Gerrit Haaker, Dmitry Isaev, Simon S. Keller, Raviteja Kotikalapudi, Magdalena A. Kowalczyk, Ruben Kuzniecky, Soenke Langner, Matteo Lenge, Kelly M. Leyden, Min Liu, Richard Q. Loi, Pascal Martin, Mario Mascalchi, Márcia Elisabete Morita, José C. Pariente, Raúl Rodríguez‐Cruces, Christian Rummel, Taavi Saavalainen, Mira Semmelroch, Mariasavina Severino, Rhys Thomas, Manuela Tondelli, Domenico Tortora, Anna Elisabetta Vaudano, Lucy Vivash, Felix von Podewils, Jan Wagner, Bernd Weber, Yi Yao, Clarissa Lin Yasuda, Guohao Zhang, Núria Bargalló, Benjamín Bender, Neda Bernasconi, Andrea Bernasconi, Boris C. Bernhardt, Ingmar Blümcke, Chad Carlson, Gianpiero L. Cavalleri, Fernando Cendes, Luis Concha, Norman Delanty, Chantal Depondt, Orrin Devinsky, Colin Doherty, Niels K. Focke, Antonio Gambardella, Renzo Guerrini, Khalid Hamandi, Graeme D. Jackson, Reetta Kälviäinen, Peter Kochunov, Patrick Kwan, Angelo Labate, Carrie R. McDonald, Stefano Meletti, Terence J. O’Brien, Sébastien Ourselin, Mark P. Richardson, Pasquale Striano, Thomas Thesen, Roland Wiest, Junsong Zhang, Annamaria Vezzani, Mina Ryten, Paul M. Thompson, Sanjay M. Sisodiya
Software Mentions: 2
Published: over 8 years ago
10.1002/brb3.1752
Neurobiological substrates of animal personality and cognition in a nonhuman primate (<i>Microcebus murinus</i>)
Cited by: 9
Author(s): Rebecca Grace Fritz, Elke Zimmermann, Martin Meier, Nadine Mestre‐Francés, Ute Radespiel, Daniel Schmidtke
Software Mentions: 2
Published: about 6 years ago
10.1186/s12935-019-0934-7
Long non-coding RNA LINC00485 acts as a microRNA-195 sponge to regulate the chemotherapy sensitivity of lung adenocarcinoma cells to cisplatin by regulating CHEK1
Cited by: 21
Author(s): Wei Zuo, Wei Zhang, Fei Xu, Jing Zhou, Wei Bai
Software Mentions: 2
Published: almost 7 years ago
10.3390/life11070638
Machine Learning Protocols in Early Cancer Detection Based on Liquid Biopsy: A Survey
Cited by: 23
Author(s): Linjing Liu, Xingjian Chen, Olutomilayo Olayemi Petinrin, Weitong Zhang, Saifur Rahaman, Zhi-Ri Tang, Ka-Chun Wong
Software Mentions: 2
Published: about 5 years ago
10.26508/lsa.202000744
An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR
Cited by: 28
Author(s): Shih Hsing Leir, Shiyi Yin, Jenny L. Kerschner, Wilmel R. Cosme, Ann Harris
Software Mentions: 2
Published: about 6 years ago
10.1097/MD.0000000000003873
Mortality, cardiovascular risk, and androgen deprivation therapy for prostate cancer
Cited by: 19
Author(s): Lucie‐Marie Scailteux, Florian Naudet, Q. Alimi, S. Vincendeau, Emmanuel Oger
Software Mentions: 2
Published: about 10 years ago
10.1590/0074-02760200203
Infestation dynamics of Triatoma dimidiata in highly deforested tropical dry forest regions of Guatemala
Cited by: 5
Author(s): Daniel Penados, José Pineda, Michelle Catalan, Μ. Vázquez Avila, Lori Stevens, Emmanuel O. Agreda, Carlota Monroy
Software Mentions: 2
Published: over 6 years ago
10.1111/1751-7915.13595
Characteristics and nutrient function of intestinal bacterial communities in black soldier fly (<i>Hermetia illucens</i> L.) larvae in livestock manure conversion
Cited by: 39
Author(s): Yue Ao, Chongrui Yang, Shengchen Wang, Qingyi Hu, Yang Li, Jibin Zhang, Yu Zhou, Minmin Cai, Chan Yu
Software Mentions: 2
Published: over 6 years ago
10.1186/s12934-021-01626-y
Alternative oxidase gene induced by nitric oxide is involved in the regulation of ROS and enhances the resistance of Pleurotus ostreatus to heat stress
Cited by: 14
Author(s): Ludan Hou, Ming Zhao, Chenyang Huang, Qi He, Lijiao Zhang, Jinxia Zhang
Software Mentions: 2
Published: about 5 years ago
10.1186/s40168-019-0768-5
Diversity, evolution, and classification of virophages uncovered through global metagenomics
Cited by: 46
Author(s): David Páez-Espino, Jizhong Zhou, Simon Roux, Stephen Nayfach, Georgios A. Pavlopoulos, Frederik Schulz, Katherine D. McMahon, David A. Walsh, Tanja Woyke, Natalia Ivanova, Emiley A. Eloe‐Fadrosh, Susannah G. Tringe, Nikos C. Kyrpides
Software Mentions: 2
Published: over 6 years ago
10.3390/microorganisms8081242
Do Metabolomics and Taxonomic Barcode Markers Tell the Same Story about the Evolution of Saccharomyces sensu stricto Complex in Fermentative Environments?
Cited by: 3
Author(s): Luca Roscini, Angela Conti, Debora Casagrande Pierantoni, Vincent Robert, Laura Della Corte, Gianluigi Cardinali
Software Mentions: 2
Published: about 6 years ago
10.3390/microorganisms9051018
Revealing the Complexity of Sweepovirus-Deltasatellite–Plant Host Interactions: Expanded Natural and Experimental Helper Virus Range and Effect Dependence on Virus-Host Combination
Cited by: 6
Author(s): Camila Geovana Ferro, F. Murilo Zerbini, Jesús Navas‐Castillo, Elvira Fiallo‐Olivé
Software Mentions: 2
Published: over 5 years ago
10.3390/microorganisms9091947
Epiphytic Bacteria from Sweet Pepper Antagonistic In Vitro to Ralstonia solanacearum BD 261, a Causative Agent of Bacterial Wilt
Cited by: 11
Author(s): Tshifhiwa Paris Mamphogoro, Casper N. Kamutando, Martin Makgose Maboko, Olayinka Ayobami Aiyegoro, Olubukola Oluranti Babalola
Software Mentions: 2
Published: almost 5 years ago
10.1093/molbev/msx173
Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination
Cited by: 62
Author(s): Rafal Mostowy, Nicholas J. Croucher, Nicola De Maio, Claire Chewapreecha, Susannah J. Salter, Paul Turner, David M. Aanensen, Stephen D. Bentley, Xavier Didelot, Christophe Fraser
Software Mentions: 2
Published: about 9 years ago
10.1186/1476-4598-12-156
Regulation of PMP22 mRNA by G3BP1 affects cell proliferation in breast cancer cells
Cited by: 53
Author(s): Sofia Winslow, Karin Leandersson, Christer Larsson
Software Mentions: 2
Published: over 12 years ago
10.3390/molecules26030767
NMR and LC-MS-Based Metabolomics to Study Osmotic Stress in Lignan-Deficient Flax
Cited by: 9
Author(s): Kamar Hamade, Ophélie Fliniaux, Jean-Xavier Fontaine, Roland Molinié, Elvis Otogo N’Nang, Solène Bassard, Stéphanie Guénin, Laurent Gutierrez, Éric Lainé, Christophe Hano, Serge Pilard, Akram Hijazi, Assem El Kak, François Mesnard
Software Mentions: 2
Published: over 5 years ago
10.3390/molecules26051446
Structure-Based Virtual Screening Identifies Multiple Stable Binding Sites at the RecA Domains of SARS-CoV-2 Helicase Enzyme
Cited by: 17
Author(s): Sajjad Ahmad, Yasir Waheed, Saba Ismail, S. H. Bhatti, Sumra Wajid Abbasi, Khalid Muhammad
Software Mentions: 2
Published: over 5 years ago
10.3390/molecules23010025
Comparative Transcriptome Analysis of Genes Involved in Anthocyanin Biosynthesis in Red and Green Walnut (Juglans regia L.)
Cited by: 32
Author(s): Yongzhou Li, Xiang Luo, Cuiyun Wu, Shangyin Cao, Yifei Zhou, Bo Jie, Cao Ya-long, Hao Meng, Guoliang Wang
Software Mentions: 2
Published: over 8 years ago
10.3390/molecules24152851
Rapid Identification of Rainbow Trout Adulteration in Atlantic Salmon by Raman Spectroscopy Combined with Machine Learning
Cited by: 23
Author(s): Zeling Chen, Ting Wu, Cheng Xiang, Xiaoyan Xu, Xingguo Tian
Software Mentions: 2
Published: about 7 years ago
10.1007/s12035-018-1433-x
Riluzole Attenuates L-DOPA-Induced Abnormal Involuntary Movements Through Decreasing CREB1 Activity: Insights from a Rat Model
Cited by: 3
Author(s): Luca Pagliaroli, Joanna Widomska, Ester Nespoli, Tobias Hildebrandt, Csaba Barta, Jeffrey Glennon, Bastian Hengerer, Geert Poelmans
Software Mentions: 2
Published: almost 8 years ago
10.1002/mnfr.201900101
Integrated Analys of High‐Fat Challenge‐Induced Changes in Blood Cell Whole‐Genome Gene Expression
Cited by: 3
Author(s): Juri C. Matualatupauw, Colm O’Grada, Maria Hughes, Helen M. Roche, Lydia A. Afman, Jildau Bouwman
Software Mentions: 2
Published: almost 7 years ago
10.1002/1878-0261.12388
A prognostic <scp>mRNA</scp> expression signature of four 16q24.3 genes in radio(chemo)therapy‐treated head and neck squamous cell carcinoma (HNSCC)
Cited by: 21
Author(s): Ludmila Wintergerst, Martin Selmansberger, Cornelius Maihöfer, Lars Schüttrumpf, Axel Walch, Christina Wilke, Adriana Pitea, Christine Woischke, Philipp Baumeister, Thomas Kirchner, Claus Belka, Ute Ganswindt, Horst Zitzelsberger, Kristian Unger, Julia Heß
Software Mentions: 2
Published: almost 8 years ago
10.1186/s12985-020-01404-z
Hepatitis B and hepatitis C prevalence among people living with HIV/AIDS in China: a systematic review and Meta-analysis
Cited by: 17
Author(s): Shengqiang Yu, Chengbo Yu, Jian Li, Shiming Liu, Haowen Wang, Min Deng
Software Mentions: 2
Published: about 6 years ago
10.1111/zph.12799
Towards One Health clinical management of zoonoses: A parallel survey of Australian general medical practitioners and veterinarians
Cited by: 11
Author(s): Sandra G. Steele, Robert Booy, Ramesh Manocha, Siobhan M. Mor, Jenny‐Ann L.M.L. Toribio
Software Mentions: 2
Published: over 5 years ago
10.1051/parasite/2017033
The genetic basis for the selection of dairy goats with enhanced resistance to gastrointestinal nematodes
Cited by: 12
Author(s): Félix Heckendorn, Anna Bieber, Steffen Werne, Anastasios Saratsis, Veronika Maurer, Christian Stricker
Software Mentions: 2
Published: over 9 years ago
10.7717/peerj.8968
Exploring environmental coverages of species: a new variable contribution estimation methodology for rulesets from the genetic algorithm for rule-set prediction
Cited by: 6
Author(s): Anni Yang, Juan Pablo Gómez, Jason K. Blackburn
Software Mentions: 2
Published: over 6 years ago
10.7717/peerj.2605
Environmental, land cover and land use constraints on the distributional patterns of anurans:<i>Leptodacylus</i>species (Anura, Leptodactylidae) from Dry Chaco
Cited by: 12
Author(s): Regina Gabriela Medina, María Laura Ponssa, Ezequiel Aráoz
Software Mentions: 2
Published: almost 10 years ago
10.3390/ph13110346
Functional Anatomical Changes in Ulcerative Colitis Patients Determine Their Gut Microbiota Composition and Consequently the Possible Treatment Outcome
Cited by: 12
Author(s): Anita Bálint, Klaudia Farkas, Orsolya Méhi, Bálint Kintses, Bálint Márk Vásárhelyi, Eszter Ari, Csaba Pál, Tamara Madácsy, József Maléth, K Szántó, István Nagy, Mariann Rutka, Péter Bacsúr, Diána Szűcs, Zoltán Szepes, Ferenc Nagy, Anna Fábián, Renáta Bor, Ágnes Milassin, Tamás Molnár
Software Mentions: 2
Published: almost 6 years ago
10.1098/rstb.2019.0295
Evaluating responses to temperature during pre-metamorphosis and carry-over effects at post-metamorphosis in the wood tiger moth ( <i>Arctia plantaginis</i> )
Cited by: 21
Author(s): Juan A. Galarza, Kishor Dhaygude, Behnaz Ghaedi, Kaisa Suisto, Janne K. Valkonen, Johanna Mappes
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pbio.1000475
Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
Cited by: 359
Author(s): Rami A. Dalloul, Julie A. Long, Aleksey V. Zimin, Muhammad Luqman Aslam, Kathryn Beal, Le Ann Blomberg, Pascal Bouffard, David W. Burt, Oswald Crasta, R.P.M.A. Crooijmans, Kristal Cooper, Roger A. Coulombe, Supriyo De, Mary E. Delany, Jerry B. Dodgson, Jennifer J. Dong, Clive Evans, Karin M. Frederickson, Paul Flicek, Liliana Florea, Otto Folkerts, Martien A. M. Groenen, Tim Harkins, Javier Herrero, Steve Hoffmann, Hendrik‐Jan Megens, Andrew Jiang, Pieter J. de Jong, Pete Kaiser, Heebal Kim, Kyu‐Won Kim, Sung-Won Kim, David Langenberger, Mi-Kyung Lee, Taeheon Lee, Shrinivasrao P. Mane, Guillaume Marçais, Manja Marz, A. P. McElroy, Thero Modise, Mikhail Nefedov, Cédric Notredame, Ian R. Paton, William S. Payne, Geo Pertea, Dennis Prickett, Daniela Puiu, Dan Qioa, Emanuele Raineri, Magali Ruffier, Steven L. Salzberg, Michael C. Schatz, Chantel F. Scheuring, Carl J. Schmidt, Steven G. Schroeder, Stephen M. J. Searle, E. J. Smith, Jacqueline Smith, Tad S. Sonstegard, Peter F. Stadler, Hakim Tafer, Zhijian Tu, Curtis P. Van Tassell, Albert J. Vilella, Kelly P. Williams, James A. Yorke, Liqing Zhang, Hongbin Zhang, Xiaojun Zhang, Yang Zhang, Kent M. Reed
Software Mentions: 2
Published: almost 16 years ago
10.1371/journal.pcbi.1000584
Defining an Essence of Structure Determining Residue Contacts in Proteins
Cited by: 41
Author(s): R. Sathyapriya, José M. Duarte, Henning Stehr, Ioannis Filippis, Michael Lappé
Software Mentions: 2
Published: over 16 years ago
10.1371/journal.pcbi.1006772
A component overlapping attribute clustering (COAC) algorithm for single-cell RNA sequencing data analysis and potential pathobiological implications
Cited by: 13
Author(s): Huan Peng, Xiangxiang Zeng, Yadi Zhou, Defu Zhang, Ruth Nussinov, Feixiong Cheng
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pcbi.1008363
Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C
Cited by: 1
Author(s): Susana Posada-Céspedes, Gert van Zyl, Hesam Montazeri, Jack Kuipers, Soo-Yon Rhee, Roger D. Kouyos, Huldrych F. Günthard, Niko Beerenwinkel
Software Mentions: 2
Published: almost 5 years ago
10.1371/journal.pcbi.1003910
Putting Theory to the Test: Which Regulatory Mechanisms Can Drive Realistic Growth of a Root?
Cited by: 34
Author(s): Dirk De Vos, Kris Vissenberg, J. Broeckhove, Gerrit T.S. Beemster
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pgen.1008422
Modeling cancer genomic data in yeast reveals selection against ATM function during tumorigenesis
Cited by: 16
Author(s): Marcel Hohl, Aditya Mojumdar, Sarem Hailemariam, Vitaly Kuryavyi, Fiorella Ghisays, Kyle Sorenson, Matthew T. Chang, Barry S. Taylor, Dinshaw J. Patel, Peter M. Burgers, Jennifer A. Cobb, John H.J. Petrini
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pgen.1005626
The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis
Cited by: 91
Author(s): Leszek P. Pryszcz, Tibor Németh, Ester Saus, Ewa Księżopolska, Eva Hegedűsová, Jozef Nosek, Kenneth H. Wolfe, Attila Gácser, Toni Gabaldón
Software Mentions: 2
Published: almost 11 years ago
10.1371/journal.pgen.1003554
Trans-Ancestral Studies Fine Map the SLE-Susceptibility Locus TNFSF4
Cited by: 50
Author(s): Harinder Manku, Carl D. Langefeld, Sandra G. Guerra, Talat H. Malik, Marta E. Alarcón‐Riquelme, Juan Manuel Anaya, Sang Cheol Bae, Susan A. Boackle, Elizabeth E. Brown, Lindsey A. Criswell, Barry I. Freedman, Patrick M. Gaffney, Peter Gregersen, Joel M. Guthridge, Sang Hoon Han, John B. Harley, Chaim O. Jacob, Judith A. James, Diane L. Kamen, Kenneth M. Kaufman, Jennifer A. Kelly, Javier Martín, Joan T. Merrill, Kathy L. Moser, Timothy B. Niewold, So Yeon Park, Bernardo A. Pons-Estel, Amr H. Sawalha, R. Hal Scofield, Nan Shen, Anne M. Stevens, Celi Sun, Gary S. Gilkeson, Jeff Edberg, Robert P. Kimberly, Swapan K. Nath, Betty P. Tsao, Tim J. Vyse
Software Mentions: 2
Published: about 13 years ago
10.1371/journal.pgen.1007130
Gene duplicates cause hybrid lethality between sympatric species of Mimulus
Cited by: 56
Author(s): Matthew P. Zuellig, Andrea L. Sweigart
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pmed.1002541
Multimorbidity in patients with heart failure from 11 Asian regions: A prospective cohort study using the ASIAN-HF registry
Cited by: 89
Author(s): Jasper Tromp, Wan Ting Tay, Wouter Ouwerkerk, Tiew‐Hwa Katherine Teng, Jonathan Yap, Michael R. MacDonald, Kirsten Leineweber, John J.V. McMurray, Michael R. Zile, Inder S. Anand, A. Mark Richards, Carolyn S.P. Lam
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pntd.0000799
Targeting Trachoma Control through Risk Mapping: The Example of Southern Sudan
Cited by: 35
Author(s): Archie C. A. Clements, Lucia W. Kur, Gideon Gatpan, Jeremiah Ngondi, Paul M. Emerson, Mounir Lado, Anthony Sabasio, Jan Kolaczinski
Software Mentions: 2
Published: about 16 years ago
10.1371/journal.pntd.0005872
Spatial distribution and risk factors of Schistosoma haematobium and hookworm infections among schoolchildren in Kwale, Kenya
Cited by: 24
Author(s): Evans Asena Chadeka, Sachiyo Nagi, Toshihiko Sunahara, Ngetich Benard Cheruiyot, Felix Bahati, Yuriko Ozeki, Matsuhisa Inoue, Mayuko Osada‐Oka, Masaru Okabe, Yukio Hirayama, Mwatasa Changoma, Keishi Adachi, Faith Mwende, Mihoko Kikuchi, Ryô Nakamura, Yombo Dan Justin Kalenda, Satoshi Kaneko, Kenji Hirayama, Muneaki Shimada, Yuki Ichinose, Sammy M. Njenga, Sohkichi Matsumoto, Shinjiro Hamano
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0074265
Shifts in the Microbial Community Composition of Gulf Coast Beaches Following Beach Oiling
Cited by: 65
Author(s): Ryan J. Newton, Susan M. Huse, Hilary G. Morrison, Colin S. Peake, Mitchell L. Sogin, Sandra L. McLellan
Software Mentions: 2
Published: almost 13 years ago
10.1371/journal.pone.0134124
Beech Fructification and Bank Vole Population Dynamics - Combined Analyses of Promoters of Human Puumala Virus Infections in Germany
Cited by: 44
Author(s): Daniela Reil, Christian Imholt, Jana A. Eccard, Jens Jacob
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.pone.0030880
Gene-Expression Signature Predicts Postoperative Recurrence in Stage I Non-Small Cell Lung Cancer Patients
Cited by: 43
Author(s): Yan Lü, Liang Wang, Pengyuan Liu, Ping Yang, Ming You
Software Mentions: 2
Published: over 14 years ago
10.1371/journal.pone.0040918
A Model-Based Method for Gene Dependency Measurement
Cited by: 4
Author(s): Qing Zhang, Xiaodan Fan, Yejun Wang, Ming-an Sun, Samuel S. M. Sun, Dianjing Guo
Software Mentions: 2
Published: about 14 years ago
10.1371/journal.pone.0130699
Species-Specific Chromosome Engineering Greatly Improves Fully Human Polyclonal Antibody Production Profile in Cattle
Cited by: 34
Author(s): Haruo Matsushita, Akiko Sano, Hua Wu, Zhongde Wang, Jin-an Jiao, Poothappillai Kasinathan, Eddie Sullivan, Yoshimi Kuroiwa
Software Mentions: 2
Published: about 11 years ago
10.1371/journal.pone.0249749
Sick of news? Television news exposure, collective stressful events and headache related emergency department visits
Cited by: 0
Author(s): Alina Vodonos, Victor Novack, Israel Waismel-Manor, Yacov Ezra, Dafne Guetta, Gal Ifergane
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0143296
Occurrence of Transgenic Feral Alfalfa (Medicago sativa subsp. sativa L.) in Alfalfa Seed Production Areas in the United States
Cited by: 27
Author(s): Stephanie L. Greene, Sandya R. Kesoju, Ruth C. Martin, Matthew Kramer
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0185310
A draft genome sequence of the rose black spot fungus Diplocarpon rosae reveals a high degree of genome duplication
Cited by: 7
Author(s): Enzo Neu, Jonathan Featherston, D. J. G. Rees, Thomas Debener
Software Mentions: 2
Published: almost 9 years ago
10.1371/journal.pone.0165828
Cluster Individuals Based on Phenotype and Determine the Risk for Atrial Fibrillation in the PREVEND and Framingham Heart Study Populations
Cited by: 3
Author(s): Michiel Rienstra, Bastiaan Geelhoed, Xiaoyan Yin, Joylene E. Siland, Rob A. Vermond, Bart A. Mulder, Pim van der Harst, Hans L. Hillege, Emelia J. Benjamin, Isabelle C. Van Gelder
Software Mentions: 2
Published: almost 10 years ago
10.1371/journal.pone.0161828
Protein Co-Expression Analysis as a Strategy to Complement a Standard Quantitative Proteomics Approach: Case of a Glioblastoma Multiforme Study
Cited by: 10
Author(s): Evangelos Kanonidis, Marcia Roy, Ruth F. Deighton, Thierry Le Bihan
Software Mentions: 2
Published: about 10 years ago
10.1371/journal.pone.0037906
The Yin and Yang of Yeast Transcription: Elements of a Global Feedback System between Metabolism and Chromatin
Cited by: 46
Author(s): Rainer Machné, Douglas B. Murray
Software Mentions: 2
Published: about 14 years ago
10.1371/journal.pone.0094147
S-Score: A Scoring System for the Identification and Prioritization of Predicted Cancer Genes
Cited by: 9
Author(s): Jorge Estefano Santana de Souza, André Fonseca, Renan Valieris, Dirce Maria Carraro, Jean Y. J. Wang, Richard D. Kolodner, Sandro J. de Souza
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0218407
Genome-wide SNP analysis of Japanese Thoroughbred racehorses
Cited by: 14
Author(s): Jeffrey A. Fawcett, Fumio Sato, Takahiro Sakamoto, Watal M. Iwasaki, Teruaki Tozaki, Hideki Innan
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pone.0220773
Population structuring of the invasive mosquito Aedes albopictus (Diptera: Culicidae) on a microgeographic scale
Cited by: 12
Author(s): Laura Cristina Multini, Ana Letícia da Silva de Souza, Mauro Toledo Marrelli, André Barretto Bruno Wilke
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pone.0037880
Conserved Expression Signatures between Medaka and Human Pigment Cell Tumors
Cited by: 33
Author(s): Manfred Schartl, Susanne Kneitz, Brigitta Wilde, Toni U. Wagner, Christiaan V. Henkel, Herman P. Spaink, Svenja Meierjohann
Software Mentions: 2
Published: over 14 years ago
10.1371/journal.pone.0011876
The Impact of Phenocopy on the Genetic Analysis of Complex Traits
Cited by: 18
Author(s): Francesco Lescai, Claudio Franceschi
Software Mentions: 2
Published: about 16 years ago
10.1371/journal.pone.0249585
Progress toward closing gaps in the hepatitis C virus cascade of care for people who inject drugs in San Francisco
Cited by: 10
Author(s): Ali Mirzazadeh, Yea‐Hung Chen, Jess Lin, Katie Burk, Erin C. Wilson, Desmond Miller, Danielle Veloso, Willi McFarland, Meghan D. Morris
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0148947
Omnivory of an Insular Lizard: Sources of Variation in the Diet of Podarcis lilfordi (Squamata, Lacertidae)
Cited by: 30
Author(s): Ana Pérez‐Cembranos, Alicia León, Valentı́n Pérez-Mellado
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0067492
Climate Change and Genetic Structure of Leading Edge and Rear End Populations in a Northwards Shifting Marine Fish Species, the Corkwing Wrasse (Symphodus melops)
Cited by: 40
Author(s): Halvor Knutsen, Per Erik Jorde, Enrique González, Joana Isabel Robalo, Jon Albretsen, Vítor Carvalho Almada
Software Mentions: 2
Published: about 13 years ago
10.1371/journal.pone.0082344
Investment into Defensive Traits by Anuran Prey (Lithobates pipiens) Is Mediated by the Starvation-Predation Risk Trade-Off
Cited by: 33
Author(s): Amanda M. Bennett, Paula B. Andrade, Dennis L. Murray
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0164327
Accuracy of Assignment of Atlantic Salmon (Salmo salar L.) to Rivers and Regions in Scotland and Northeast England Based on Single Nucleotide Polymorphism (SNP) Markers
Cited by: 32
Author(s): John Gilbey, Eef Cauwelier, Mark W. Coulson, Lee Stradmeyer, James N. Sampayo, Anja Armstrong, Eric Verspoor, Laura Corrigan, Jonathan Shelley, Stuart J. Middlemas
Software Mentions: 2
Published: almost 10 years ago
10.1371/journal.pone.0234711
Assessment of organizational readiness to implement an electronic health record system in a low-resource settings cancer hospital: A cross-sectional survey
Cited by: 18
Author(s): Johnblack Kabukye, Nicolet de Keizer, Ronald Cornet
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0207566
Decades of native bee biodiversity surveys at Pinnacles National Park highlight the importance of monitoring natural areas over time
Cited by: 27
Author(s): Joan M. Meiners, Terry Griswold, Olivia Messinger Carril
Software Mentions: 2
Published: over 7 years ago