Ecosyste.ms: Papers

10.1186/s40529-018-0244-8

Nuclear and chloroplast DNA phylogeography suggests an Early Miocene southward expansion of Lithocarpus (Fagaceae) on the Asian continent and islands
Cited by: 7
Author(s): Chia‐Ling Yang, Yu Chung Chiang, Bing Huang, Li Ju, Pei Chun Liao
Software Mentions: 2
Published: about 6 years ago

10.1038/s41416-019-0491-9

Plasma total cell-free DNA is a prognostic biomarker of overall survival in metastatic solid tumour patients
Cited by: 10
Author(s): Ida Viller Tuxen, Lise Barlebo Ahlborn, Morten Mau-Søerensen, Kristoffer Staal Rohrberg, Finn C. Nielsen, Olga Oestrup, Christina Westmose Yde, I.R. Vogelius, Ulrik Lassen
Software Mentions: 2
Published: over 5 years ago

10.1093/brain/awx341

Structural brain abnormalities in the common epilepsies assessed in a worldwide ENIGMA study
Cited by: 314
Author(s): Christopher D. Whelan, André Altmann, Juan A. Botía, Neda Jahanshad, Derrek P. Hibar, Julie Absil, Saud Alhusaini, Marina Alvim, Pia Auvinen, Emanuele Bartolini, Felipe P. G. Bergo, Tauana Bernardes, Karen Blackmon, Bárbara Braga, Maria Eugenia Caligiuri, Anna Calvo, Sarah Carr, Jian Chen, Shuai Chen, Andrea Cherubini, Philippe David, Martin Domín, Sonya Foley, Wendy Caroline de Souza Costa França, Gerrit Haaker, Dmitry Isaev, Simon S. Keller, Raviteja Kotikalapudi, Magdalena A. Kowalczyk, Ruben Kuzniecky, Soenke Langner, Matteo Lenge, Kelly M. Leyden, Min Liu, Richard Q. Loi, Pascal Martin, Mario Mascalchi, Márcia Elisabete Morita, José C. Pariente, Raúl Rodríguez‐Cruces, Christian Rummel, Taavi Saavalainen, Mira Semmelroch, Mariasavina Severino, Rhys Thomas, Manuela Tondelli, Domenico Tortora, Anna Elisabetta Vaudano, Lucy Vivash, Felix von Podewils, Jan Wagner, Bernd Weber, Yi Yao, Clarissa Lin Yasuda, Guohao Zhang, Núria Bargalló, Benjamín Bender, Neda Bernasconi, Andrea Bernasconi, Boris C. Bernhardt, Ingmar Blümcke, Chad Carlson, Gianpiero L. Cavalleri, Fernando Cendes, Luis Concha, Norman Delanty, Chantal Depondt, Orrin Devinsky, Colin Doherty, Niels K. Focke, Antonio Gambardella, Renzo Guerrini, Khalid Hamandi, Graeme D. Jackson, Reetta Kälviäinen, Peter Kochunov, Patrick Kwan, Angelo Labate, Carrie R. McDonald, Stefano Meletti, Terence J. O’Brien, Sébastien Ourselin, Mark P. Richardson, Pasquale Striano, Thomas Thesen, Roland Wiest, Junsong Zhang, Annamaria Vezzani, Mina Ryten, Paul M. Thompson, Sanjay M. Sisodiya
Software Mentions: 2
Published: almost 7 years ago

10.1002/brb3.1752

Neurobiological substrates of animal personality and cognition in a nonhuman primate (<i>Microcebus murinus</i>)
Cited by: 9
Author(s): Rebecca Grace Fritz, Elke Zimmermann, Martin Meier, Nadine Mestre‐Francés, Ute Radespiel, Daniel Schmidtke
Software Mentions: 2
Published: over 4 years ago

10.1186/s12935-019-0934-7

Long non-coding RNA LINC00485 acts as a microRNA-195 sponge to regulate the chemotherapy sensitivity of lung adenocarcinoma cells to cisplatin by regulating CHEK1
Cited by: 21
Author(s): Wei Zuo, Wei Zhang, Fei Xu, Jing Zhou, Wei Bai
Software Mentions: 2
Published: about 5 years ago

10.3390/life11070638

Machine Learning Protocols in Early Cancer Detection Based on Liquid Biopsy: A Survey
Cited by: 23
Author(s): Linjing Liu, Xingjian Chen, Olutomilayo Olayemi Petinrin, Weitong Zhang, Saifur Rahaman, Zhi-Ri Tang, Ka-Chun Wong
Software Mentions: 2
Published: over 3 years ago

10.26508/lsa.202000744

An atlas of human proximal epididymis reveals cell-specific functions and distinct roles for CFTR
Cited by: 28
Author(s): Shih Hsing Leir, Shiyi Yin, Jenny L. Kerschner, Wilmel R. Cosme, Ann Harris
Software Mentions: 2
Published: about 4 years ago

10.1097/MD.0000000000003873

Mortality, cardiovascular risk, and androgen deprivation therapy for prostate cancer
Cited by: 19
Author(s): Lucie‐Marie Scailteux, Florian Naudet, Q. Alimi, S. Vincendeau, Emmanuel Oger
Software Mentions: 2
Published: over 8 years ago

10.1590/0074-02760200203

Infestation dynamics of Triatoma dimidiata in highly deforested tropical dry forest regions of Guatemala
Cited by: 5
Author(s): Daniel Penados, José Pineda, Michelle Catalan, Μ. Vázquez Avila, Lori Stevens, Emmanuel O. Agreda, Carlota Monroy
Software Mentions: 2
Published: almost 5 years ago

10.1111/1751-7915.13595

Characteristics and nutrient function of intestinal bacterial communities in black soldier fly (<i>Hermetia illucens</i> L.) larvae in livestock manure conversion
Cited by: 39
Author(s): Yue Ao, Chongrui Yang, Shengchen Wang, Qingyi Hu, Yang Li, Jibin Zhang, Yu Zhou, Minmin Cai, Chan Yu
Software Mentions: 2
Published: over 4 years ago

10.1186/s12934-021-01626-y

Alternative oxidase gene induced by nitric oxide is involved in the regulation of ROS and enhances the resistance of Pleurotus ostreatus to heat stress
Cited by: 14
Author(s): Ludan Hou, Ming Zhao, Chenyang Huang, Qi He, Lijiao Zhang, Jinxia Zhang
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-019-0768-5

Diversity, evolution, and classification of virophages uncovered through global metagenomics
Cited by: 46
Author(s): David Páez-Espino, Jizhong Zhou, Simon Roux, Stephen Nayfach, Georgios A. Pavlopoulos, Frederik Schulz, Katherine D. McMahon, David A. Walsh, Tanja Woyke, Natalia Ivanova, Emiley A. Eloe‐Fadrosh, Susannah G. Tringe, Nikos C. Kyrpides
Software Mentions: 2
Published: almost 5 years ago

10.3390/microorganisms8081242

Do Metabolomics and Taxonomic Barcode Markers Tell the Same Story about the Evolution of Saccharomyces sensu stricto Complex in Fermentative Environments?
Cited by: 3
Author(s): Luca Roscini, Angela Conti, Debora Casagrande Pierantoni, Vincent Robert, Laura Della Corte, Gianluigi Cardinali
Software Mentions: 2
Published: over 4 years ago

10.3390/microorganisms9051018

Revealing the Complexity of Sweepovirus-Deltasatellite–Plant Host Interactions: Expanded Natural and Experimental Helper Virus Range and Effect Dependence on Virus-Host Combination
Cited by: 6
Author(s): Camila Geovana Ferro, F. Murilo Zerbini, Jesús Navas‐Castillo, Elvira Fiallo‐Olivé
Software Mentions: 2
Published: over 3 years ago

10.3390/microorganisms9091947

Epiphytic Bacteria from Sweet Pepper Antagonistic In Vitro to Ralstonia solanacearum BD 261, a Causative Agent of Bacterial Wilt
Cited by: 11
Author(s): Tshifhiwa Paris Mamphogoro, Casper N. Kamutando, Martin Makgose Maboko, Olayinka Ayobami Aiyegoro, Olubukola Oluranti Babalola
Software Mentions: 2
Published: about 3 years ago

10.1093/molbev/msx173

Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination
Cited by: 62
Author(s): Rafal Mostowy, Nicholas J. Croucher, Nicola De Maio, Claire Chewapreecha, Susannah J. Salter, Paul Turner, David M. Aanensen, Stephen D. Bentley, Xavier Didelot, Christophe Fraser
Software Mentions: 2
Published: over 7 years ago

10.1186/1476-4598-12-156

Regulation of PMP22 mRNA by G3BP1 affects cell proliferation in breast cancer cells
Cited by: 53
Author(s): Sofia Winslow, Karin Leandersson, Christer Larsson
Software Mentions: 2
Published: almost 11 years ago

10.3390/molecules26030767

NMR and LC-MS-Based Metabolomics to Study Osmotic Stress in Lignan-Deficient Flax
Cited by: 9
Author(s): Kamar Hamade, Ophélie Fliniaux, Jean-Xavier Fontaine, Roland Molinié, Elvis Otogo N’Nang, Solène Bassard, Stéphanie Guénin, Laurent Gutierrez, Éric Lainé, Christophe Hano, Serge Pilard, Akram Hijazi, Assem El Kak, François Mesnard
Software Mentions: 2
Published: almost 4 years ago

10.3390/molecules26051446

Structure-Based Virtual Screening Identifies Multiple Stable Binding Sites at the RecA Domains of SARS-CoV-2 Helicase Enzyme
Cited by: 17
Author(s): Sajjad Ahmad, Yasir Waheed, Saba Ismail, S. H. Bhatti, Sumra Wajid Abbasi, Khalid Muhammad
Software Mentions: 2
Published: over 3 years ago

10.3390/molecules23010025

Comparative Transcriptome Analysis of Genes Involved in Anthocyanin Biosynthesis in Red and Green Walnut (Juglans regia L.)
Cited by: 32
Author(s): Yongzhou Li, Xiang Luo, Cuiyun Wu, Shangyin Cao, Yifei Zhou, Bo Jie, Cao Ya-long, Hao Meng, Guoliang Wang
Software Mentions: 2
Published: almost 7 years ago

10.3390/molecules24152851

Rapid Identification of Rainbow Trout Adulteration in Atlantic Salmon by Raman Spectroscopy Combined with Machine Learning
Cited by: 23
Author(s): Zeling Chen, Ting Wu, Cheng Xiang, Xiaoyan Xu, Xingguo Tian
Software Mentions: 2
Published: over 5 years ago

10.1007/s12035-018-1433-x

Riluzole Attenuates L-DOPA-Induced Abnormal Involuntary Movements Through Decreasing CREB1 Activity: Insights from a Rat Model
Cited by: 3
Author(s): Luca Pagliaroli, Joanna Widomska, Ester Nespoli, Tobias Hildebrandt, Csaba Barta, Jeffrey Glennon, Bastian Hengerer, Geert Poelmans
Software Mentions: 2
Published: almost 6 years ago

10.1002/mnfr.201900101

Integrated Analys of High‐Fat Challenge‐Induced Changes in Blood Cell Whole‐Genome Gene Expression
Cited by: 3
Author(s): Juri C. Matualatupauw, Colm O’Grada, Maria Hughes, Helen M. Roche, Lydia A. Afman, Jildau Bouwman
Software Mentions: 2
Published: about 5 years ago

10.1002/1878-0261.12388

A prognostic <scp>mRNA</scp> expression signature of four 16q24.3 genes in radio(chemo)therapy‐treated head and neck squamous cell carcinoma (HNSCC)
Cited by: 21
Author(s): Ludmila Wintergerst, Martin Selmansberger, Cornelius Maihöfer, Lars Schüttrumpf, Axel Walch, Christina Wilke, Adriana Pitea, Christine Woischke, Philipp Baumeister, Thomas Kirchner, Claus Belka, Ute Ganswindt, Horst Zitzelsberger, Kristian Unger, Julia Heß
Software Mentions: 2
Published: about 6 years ago

10.1186/s12985-020-01404-z

Hepatitis B and hepatitis C prevalence among people living with HIV/AIDS in China: a systematic review and Meta-analysis
Cited by: 17
Author(s): Shengqiang Yu, Chengbo Yu, Jian Li, Shiming Liu, Haowen Wang, Min Deng
Software Mentions: 2
Published: about 4 years ago

10.1111/zph.12799

Towards One Health clinical management of zoonoses: A parallel survey of Australian general medical practitioners and veterinarians
Cited by: 11
Author(s): Sandra G. Steele, Robert Booy, Ramesh Manocha, Siobhan M. Mor, Jenny‐Ann L.M.L. Toribio
Software Mentions: 2
Published: almost 4 years ago

10.1051/parasite/2017033

The genetic basis for the selection of dairy goats with enhanced resistance to gastrointestinal nematodes
Cited by: 12
Author(s): Félix Heckendorn, Anna Bieber, Steffen Werne, Anastasios Saratsis, Veronika Maurer, Christian Stricker
Software Mentions: 2
Published: almost 8 years ago

10.7717/peerj.8968

Exploring environmental coverages of species: a new variable contribution estimation methodology for rulesets from the genetic algorithm for rule-set prediction
Cited by: 6
Author(s): Anni Yang, Juan Pablo Gómez, Jason K. Blackburn
Software Mentions: 2
Published: over 4 years ago

10.7717/peerj.2605

Environmental, land cover and land use constraints on the distributional patterns of anurans:<i>Leptodacylus</i>species (Anura, Leptodactylidae) from Dry Chaco
Cited by: 12
Author(s): Regina Gabriela Medina, María Laura Ponssa, Ezequiel Aráoz
Software Mentions: 2
Published: about 8 years ago

10.3390/ph13110346

Functional Anatomical Changes in Ulcerative Colitis Patients Determine Their Gut Microbiota Composition and Consequently the Possible Treatment Outcome
Cited by: 12
Author(s): Anita Bálint, Klaudia Farkas, Orsolya Méhi, Bálint Kintses, Bálint Márk Vásárhelyi, Eszter Ari, Csaba Pál, Tamara Madácsy, József Maléth, K Szántó, István Nagy, Mariann Rutka, Péter Bacsúr, Diána Szűcs, Zoltán Szepes, Ferenc Nagy, Anna Fábián, Renáta Bor, Ágnes Milassin, Tamás Molnár
Software Mentions: 2
Published: about 4 years ago

10.1098/rstb.2019.0295

Evaluating responses to temperature during pre-metamorphosis and carry-over effects at post-metamorphosis in the wood tiger moth ( <i>Arctia plantaginis</i> )
Cited by: 21
Author(s): Juan A. Galarza, Kishor Dhaygude, Behnaz Ghaedi, Kaisa Suisto, Janne K. Valkonen, Johanna Mappes
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pbio.1000475

Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis
Cited by: 359
Author(s): Rami A. Dalloul, Julie A. Long, Aleksey V. Zimin, Muhammad Luqman Aslam, Kathryn Beal, Le Ann Blomberg, Pascal Bouffard, David W. Burt, Oswald Crasta, R.P.M.A. Crooijmans, Kristal Cooper, Roger A. Coulombe, Supriyo De, Mary E. Delany, Jerry B. Dodgson, Jennifer J. Dong, Clive Evans, Karin M. Frederickson, Paul Flicek, Liliana Florea, Otto Folkerts, Martien A. M. Groenen, Tim Harkins, Javier Herrero, Steve Hoffmann, Hendrik‐Jan Megens, Andrew Jiang, Pieter J. de Jong, Pete Kaiser, Heebal Kim, Kyu‐Won Kim, Sung-Won Kim, David Langenberger, Mi-Kyung Lee, Taeheon Lee, Shrinivasrao P. Mane, Guillaume Marçais, Manja Marz, A. P. McElroy, Thero Modise, Mikhail Nefedov, Cédric Notredame, Ian R. Paton, William S. Payne, Geo Pertea, Dennis Prickett, Daniela Puiu, Dan Qioa, Emanuele Raineri, Magali Ruffier, Steven L. Salzberg, Michael C. Schatz, Chantel F. Scheuring, Carl J. Schmidt, Steven G. Schroeder, Stephen M. J. Searle, E. J. Smith, Jacqueline Smith, Tad S. Sonstegard, Peter F. Stadler, Hakim Tafer, Zhijian Tu, Curtis P. Van Tassell, Albert J. Vilella, Kelly P. Williams, James A. Yorke, Liqing Zhang, Hongbin Zhang, Xiaojun Zhang, Yang Zhang, Kent M. Reed
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pcbi.1000584

Defining an Essence of Structure Determining Residue Contacts in Proteins
Cited by: 41
Author(s): R. Sathyapriya, José M. Duarte, Henning Stehr, Ioannis Filippis, Michael Lappé
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pcbi.1006772

A component overlapping attribute clustering (COAC) algorithm for single-cell RNA sequencing data analysis and potential pathobiological implications
Cited by: 13
Author(s): Huan Peng, Xiangxiang Zeng, Yadi Zhou, Defu Zhang, Ruth Nussinov, Feixiong Cheng
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pcbi.1008363

Comparing mutational pathways to lopinavir resistance in HIV-1 subtypes B versus C
Cited by: 1
Author(s): Susana Posada-Céspedes, Gert van Zyl, Hesam Montazeri, Jack Kuipers, Soo-Yon Rhee, Roger D. Kouyos, Huldrych F. Günthard, Niko Beerenwinkel
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1003910

Putting Theory to the Test: Which Regulatory Mechanisms Can Drive Realistic Growth of a Root?
Cited by: 34
Author(s): Dirk De Vos, Kris Vissenberg, J. Broeckhove, Gerrit T.S. Beemster
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pgen.1008422

Modeling cancer genomic data in yeast reveals selection against ATM function during tumorigenesis
Cited by: 16
Author(s): Marcel Hohl, Aditya Mojumdar, Sarem Hailemariam, Vitaly Kuryavyi, Fiorella Ghisays, Kyle Sorenson, Matthew T. Chang, Barry S. Taylor, Dinshaw J. Patel, Peter M. Burgers, Jennifer A. Cobb, John H.J. Petrini
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pgen.1005626

The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis
Cited by: 91
Author(s): Leszek P. Pryszcz, Tibor Németh, Ester Saus, Ewa Księżopolska, Eva Hegedűsová, Jozef Nosek, Kenneth H. Wolfe, Attila Gácser, Toni Gabaldón
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pgen.1003554

Trans-Ancestral Studies Fine Map the SLE-Susceptibility Locus TNFSF4
Cited by: 50
Author(s): Harinder Manku, Carl D. Langefeld, Sandra G. Guerra, Talat H. Malik, Marta E. Alarcón‐Riquelme, Juan Manuel Anaya, Sang Cheol Bae, Susan A. Boackle, Elizabeth E. Brown, Lindsey A. Criswell, Barry I. Freedman, Patrick M. Gaffney, Peter Gregersen, Joel M. Guthridge, Sang Hoon Han, John B. Harley, Chaim O. Jacob, Judith A. James, Diane L. Kamen, Kenneth M. Kaufman, Jennifer A. Kelly, Javier Martín, Joan T. Merrill, Kathy L. Moser, Timothy B. Niewold, So Yeon Park, Bernardo A. Pons-Estel, Amr H. Sawalha, R. Hal Scofield, Nan Shen, Anne M. Stevens, Celi Sun, Gary S. Gilkeson, Jeff Edberg, Robert P. Kimberly, Swapan K. Nath, Betty P. Tsao, Tim J. Vyse
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pgen.1007130

Gene duplicates cause hybrid lethality between sympatric species of Mimulus
Cited by: 56
Author(s): Matthew P. Zuellig, Andrea L. Sweigart
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pmed.1002541

Multimorbidity in patients with heart failure from 11 Asian regions: A prospective cohort study using the ASIAN-HF registry
Cited by: 89
Author(s): Jasper Tromp, Wan Ting Tay, Wouter Ouwerkerk, Tiew‐Hwa Katherine Teng, Jonathan Yap, Michael R. MacDonald, Kirsten Leineweber, John J.V. McMurray, Michael R. Zile, Inder S. Anand, A. Mark Richards, Carolyn S.P. Lam
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pntd.0000799

Targeting Trachoma Control through Risk Mapping: The Example of Southern Sudan
Cited by: 35
Author(s): Archie C. A. Clements, Lucia W. Kur, Gideon Gatpan, Jeremiah Ngondi, Paul M. Emerson, Mounir Lado, Anthony Sabasio, Jan Kolaczinski
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pntd.0005872

Spatial distribution and risk factors of Schistosoma haematobium and hookworm infections among schoolchildren in Kwale, Kenya
Cited by: 24
Author(s): Evans Asena Chadeka, Sachiyo Nagi, Toshihiko Sunahara, Ngetich Benard Cheruiyot, Felix Bahati, Yuriko Ozeki, Matsuhisa Inoue, Mayuko Osada‐Oka, Masaru Okabe, Yukio Hirayama, Mwatasa Changoma, Keishi Adachi, Faith Mwende, Mihoko Kikuchi, Ryô Nakamura, Yombo Dan Justin Kalenda, Satoshi Kaneko, Kenji Hirayama, Muneaki Shimada, Yuki Ichinose, Sammy M. Njenga, Sohkichi Matsumoto, Shinjiro Hamano
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0074265

Shifts in the Microbial Community Composition of Gulf Coast Beaches Following Beach Oiling
Cited by: 65
Author(s): Ryan J. Newton, Susan M. Huse, Hilary G. Morrison, Colin S. Peake, Mitchell L. Sogin, Sandra L. McLellan
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0134124

Beech Fructification and Bank Vole Population Dynamics - Combined Analyses of Promoters of Human Puumala Virus Infections in Germany
Cited by: 44
Author(s): Daniela Reil, Christian Imholt, Jana A. Eccard, Jens Jacob
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0030880

Gene-Expression Signature Predicts Postoperative Recurrence in Stage I Non-Small Cell Lung Cancer Patients
Cited by: 43
Author(s): Yan Lü, Liang Wang, Pengyuan Liu, Ping Yang, Ming You
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0040918

A Model-Based Method for Gene Dependency Measurement
Cited by: 4
Author(s): Qing Zhang, Xiaodan Fan, Yejun Wang, Ming-an Sun, Samuel S. M. Sun, Dianjing Guo
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0130699

Species-Specific Chromosome Engineering Greatly Improves Fully Human Polyclonal Antibody Production Profile in Cattle
Cited by: 34
Author(s): Haruo Matsushita, Akiko Sano, Hua Wu, Zhongde Wang, Jin-an Jiao, Poothappillai Kasinathan, Eddie Sullivan, Yoshimi Kuroiwa
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0249749

Sick of news? Television news exposure, collective stressful events and headache related emergency department visits
Cited by: 0
Author(s): Alina Vodonos, Victor Novack, Israel Waismel-Manor, Yacov Ezra, Dafne Guetta, Gal Ifergane
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0143296

Occurrence of Transgenic Feral Alfalfa (Medicago sativa subsp. sativa L.) in Alfalfa Seed Production Areas in the United States
Cited by: 27
Author(s): Stephanie L. Greene, Sandya R. Kesoju, Ruth C. Martin, Matthew Kramer
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0185310

A draft genome sequence of the rose black spot fungus Diplocarpon rosae reveals a high degree of genome duplication
Cited by: 7
Author(s): Enzo Neu, Jonathan Featherston, D. J. G. Rees, Thomas Debener
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0165828

Cluster Individuals Based on Phenotype and Determine the Risk for Atrial Fibrillation in the PREVEND and Framingham Heart Study Populations
Cited by: 3
Author(s): Michiel Rienstra, Bastiaan Geelhoed, Xiaoyan Yin, Joylene E. Siland, Rob A. Vermond, Bart A. Mulder, Pim van der Harst, Hans L. Hillege, Emelia J. Benjamin, Isabelle C. Van Gelder
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0161828

Protein Co-Expression Analysis as a Strategy to Complement a Standard Quantitative Proteomics Approach: Case of a Glioblastoma Multiforme Study
Cited by: 10
Author(s): Evangelos Kanonidis, Marcia Roy, Ruth F. Deighton, Thierry Le Bihan
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0037906

The Yin and Yang of Yeast Transcription: Elements of a Global Feedback System between Metabolism and Chromatin
Cited by: 46
Author(s): Rainer Machné, Douglas B. Murray
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0094147

S-Score: A Scoring System for the Identification and Prioritization of Predicted Cancer Genes
Cited by: 9
Author(s): Jorge Estefano Santana de Souza, André Fonseca, Renan Valieris, Dirce Maria Carraro, Jean Y. J. Wang, Richard D. Kolodner, Sandro J. de Souza
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0218407

Genome-wide SNP analysis of Japanese Thoroughbred racehorses
Cited by: 14
Author(s): Jeffrey A. Fawcett, Fumio Sato, Takahiro Sakamoto, Watal M. Iwasaki, Teruaki Tozaki, Hideki Innan
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0220773

Population structuring of the invasive mosquito Aedes albopictus (Diptera: Culicidae) on a microgeographic scale
Cited by: 12
Author(s): Laura Cristina Multini, Ana Letícia da Silva de Souza, Mauro Toledo Marrelli, André Barretto Bruno Wilke
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0037880

Conserved Expression Signatures between Medaka and Human Pigment Cell Tumors
Cited by: 33
Author(s): Manfred Schartl, Susanne Kneitz, Brigitta Wilde, Toni U. Wagner, Christiaan V. Henkel, Herman P. Spaink, Svenja Meierjohann
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0011876

The Impact of Phenocopy on the Genetic Analysis of Complex Traits
Cited by: 18
Author(s): Francesco Lescai, Claudio Franceschi
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0249585

Progress toward closing gaps in the hepatitis C virus cascade of care for people who inject drugs in San Francisco
Cited by: 10
Author(s): Ali Mirzazadeh, Yea‐Hung Chen, Jess Lin, Katie Burk, Erin C. Wilson, Desmond Miller, Danielle Veloso, Willi McFarland, Meghan D. Morris
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0148947

Omnivory of an Insular Lizard: Sources of Variation in the Diet of Podarcis lilfordi (Squamata, Lacertidae)
Cited by: 30
Author(s): Ana Pérez‐Cembranos, Alicia León, Valentı́n Pérez-Mellado
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0067492

Climate Change and Genetic Structure of Leading Edge and Rear End Populations in a Northwards Shifting Marine Fish Species, the Corkwing Wrasse (Symphodus melops)
Cited by: 40
Author(s): Halvor Knutsen, Per Erik Jorde, Enrique González, Joana Isabel Robalo, Jon Albretsen, Vítor Carvalho Almada
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0082344

Investment into Defensive Traits by Anuran Prey (Lithobates pipiens) Is Mediated by the Starvation-Predation Risk Trade-Off
Cited by: 33
Author(s): Amanda M. Bennett, Paula B. Andrade, Dennis L. Murray
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0164327

Accuracy of Assignment of Atlantic Salmon (Salmo salar L.) to Rivers and Regions in Scotland and Northeast England Based on Single Nucleotide Polymorphism (SNP) Markers
Cited by: 32
Author(s): John Gilbey, Eef Cauwelier, Mark W. Coulson, Lee Stradmeyer, James N. Sampayo, Anja Armstrong, Eric Verspoor, Laura Corrigan, Jonathan Shelley, Stuart J. Middlemas
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0234711

Assessment of organizational readiness to implement an electronic health record system in a low-resource settings cancer hospital: A cross-sectional survey
Cited by: 18
Author(s): Johnblack Kabukye, Nicolet de Keizer, Ronald Cornet
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0207566

Decades of native bee biodiversity surveys at Pinnacles National Park highlight the importance of monitoring natural areas over time
Cited by: 27
Author(s): Joan M. Meiners, Terry Griswold, Olivia Messinger Carril
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0254758

Magnetic resonance imaging with gradient sound respiration guide
Cited by: 1
Author(s): Naoharu Kobayashi
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0114630

CD4+CD25hiFOXP3+ Cells in Cord Blood of Neonates Born from Filaria Infected Mother Are Negatively Associated with CD4+Tbet+ and CD4+RORγt+ T Cells
Cited by: 9
Author(s): Ulysse Ateba-Ngoa, Ghyslain Mombo-Ngoma, Eva Christine Zettlmeissl, Luciën E. P. M. van der Vlugt, Sanne E. de Jong, Pierre‐Blaise Matsiegui, Michael Ramharter, Peter G. Kremsner, Maria Yazdanbakhsh, Ayôla Akim Adegnika
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0008979

CK1ε Is Required for Breast Cancers Dependent on β-Catenin Activity
Cited by: 65
Author(s): So Young Kim, Ian F. Dunn, Ron Firestein, Piyush B. Gupta, Leslie Wardwell, Kara Repich, Anna C. Schinzel, Ben S. Wittner, Serena J. Silver, David E. Root, Jesse S. Boehm, Sridhar Ramaswamy, Eric S. Lander, William C. Hahn
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0077588

Genetic Analysis of a Rat Model of Aerobic Capacity and Metabolic Fitness
Cited by: 40
Author(s): Yu yu Ren, Katherine A. Overmyer, Nathan Qi, Mary K. Treutelaar, Lori Heckenkamp, Molly Kalahar, Lauren G. Koch, Steven L. Britton, Charles F. Burant, Jun Z. Li
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0080272

A Physical Map of the Short Arm of Wheat Chromosome 1A
Cited by: 30
Author(s): James Breen, Thomas Wicker, Margarita Shatalina, Zeev Frenkel, Isabelle Bertin, Romain Philippe, Wolfgang Spielmeyer, Hana Šimková, Jan Šafář, Federica Cattonaro, Simone Scalabrin, Federica Magni, Sonia Vautrin, Hélène Berges, Etienne Paux, Tzion Fahima, Jaroslav Doležel, Abraham B. Korol, Catherine Feuillet, Beat Keller
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0152569

QTLs for Woolly Poplar Aphid (Phloeomyzus passerinii L.) Resistance Detected in an Inter-Specific Populus deltoides x P. nigra Mapping Population
Cited by: 11
Author(s): Giorgia Carletti, Andrea Carrà, Gianni Allegro, Lorenzo Vietto, Francesca Desiderio, Paolo Bagnaresi, Alberto Gianinetti, Luigi Cattivelli, Giampiero Valè, G. Nervo
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0244493

Comparative proteomics provides insights into diapause program of Bactrocera minax (Diptera: Tephritidae)
Cited by: 20
Author(s): Jia Wang, Li-Lin Ran, Ying Li, Ying‐Hong Liu
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0200789

Eyes shut homolog is important for the maintenance of photoreceptor morphology and visual function in zebrafish
Cited by: 35
Author(s): Muriël Messchaert, Margo Dona, Sanne Broekman, Theo Peters, Julio C. Corral-Serrano, Ralph Slijkerman, Erwin van Wijk, Rob W.J. Collin
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0171482

Pupal colour plasticity in a tropical butterfly, Mycalesis mineus (Nymphalidae: Satyrinae)
Cited by: 14
Author(s): Harshad Vijay Mayekar, Ullasa Kodandaramaiah
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0086175

Using Environmental DNA to Census Marine Fishes in a Large Mesocosm
Cited by: 355
Author(s): Ryan P. Kelly, Jesse A. Port, Kevan M. Yamahara, Larry B. Crowder
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0158000

Changes in the Chemical Barrier Composition of Tears in Alzheimer’s Disease Reveal Potential Tear Diagnostic Biomarkers
Cited by: 88
Author(s): Gergő Kalló, Miklós Emri, Zsófia Varga, Bernadett Ujhelyi, József Tőzsér, Adrienne Csutak, Éva Csősz
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0205474

A unified framework for unconstrained and constrained ordination of microbiome read count data
Cited by: 14
Author(s): Stijn Hawinkel, Frederiek‐Maarten Kerckhof, Luc Bijnens, Olivier Thas
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0194146

STAT3 precedes HIF1α transcriptional responses to oxygen and oxygen and glucose deprivation in human brain pericytes
Cited by: 19
Author(s): Robert Carlsson, Ilknur Özen, Marco Barbariga, Abderahim Gaceb, Michaela Roth, Gesine Paul
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0015996

Natural Plant Sugar Sources of Anopheles Mosquitoes Strongly Impact Malaria Transmission Potential
Cited by: 99
Author(s): Wanyi Gu, Gunter C. Müller, Yosef Schlein, Robert J. Novak, John C. Beier
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0049833

BCG Vaccination Reduces Risk of Tuberculosis Infection in Vaccinated Badgers and Unvaccinated Badger Cubs
Cited by: 110
Author(s): Stephen P. Carter, Mark A. Chambers, Stephen Rushton, Mark Shirley, Pia Schuchert, Stéphane Pietravalle, Alistair Murray, Fiona Rogers, G. Gettinby, Graham C. Smith, Richard J. Delahay, R. Glyn Hewinson, Robbie A. McDonald
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0100422

Modelling the Seasonal Epidemics of Respiratory Syncytial Virus in Young Children
Cited by: 39
Author(s): Hannah C Moore, Peter Jacoby, Alexandra B. Hogan, Christopher C Blyth, G. N. Mercer
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0181265

Characterization of the maize lipoxygenase gene family in relation to aflatoxin accumulation resistance
Cited by: 41
Author(s): Oluwaseun Ogunola, Leigh K. Hawkins, Erik Mylroie, Michael V. Kolomiets, Eli J. Borrego, Juliet D. Tang, W. Paul Williams, Marilyn L. Warburton
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0031051

Ecologically Appropriate Xenobiotics Induce Cytochrome P450s in Apis mellifera
Cited by: 130
Author(s): Reed M. Johnson, Wenfu Mao, Henry S. Pollock, Guodong Niu, Mary A. Schuler, May R. Berenbaum
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0121778

Transcriptome Assembly, Gene Annotation and Tissue Gene Expression Atlas of the Rainbow Trout
Cited by: 45
Author(s): Mohamed Salem, Bam Paneru, Rafet Al-Tobasei, Fatima Abdouni, Gary H. Thorgaard, Caird E. Rexroad, Jianbo Yao
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0038904

Predicting Progression of IgA Nephropathy: New Clinical Progression Risk Score
Cited by: 104
Author(s): Jingyuan Xie, Krzysztof Kiryluk, Weiming Wang, Zhaohui Wang, Shanmai Guo, Ping Shen, Hong Ren, Xiaoxia Pan, Xiaonong Chen, Wen Zhang, Xiao Li, Hao Shi, Yifu Li, Ali G. Gharavi, Nan Chen
Software Mentions: 2
Published: over 12 years ago

10.3390/cancers12051345

Genomic and Transcriptomic Characteristics According to Size of Papillary Thyroid Microcarcinoma
Cited by: 11
Author(s): Young Shin Song, Byung Hee Kang, Seungbok Lee, Seong Keun Yoo, Young Sik Choi, Jungsun Park, Dong Yoon Park, Kyu Eun Lee, Jeong Sun Seo, Young Joo Park
Software Mentions: 2
Published: over 4 years ago

10.3390/cancers12092498

Drug Vulnerabilities and Disease Prognosis Linked to the Stem Cell-Like Gene Expression Program Triggered by the RHO GTPase Activator VAV2 in Hyperplastic Keratinocytes and Head and Neck Cancer
Cited by: 7
Author(s): L. Francisco Lorenzo‐Martín, Mauricio Menacho‐Marquez, Xosé R. Bustelo
Software Mentions: 2
Published: about 4 years ago

10.3390/cancers13030489

Restoring the DREAM Complex Inhibits the Proliferation of High-Risk HPV Positive Human Cells
Cited by: 5
Author(s): Claire D. James, Siddharth Saini, Fatmata Sesay, Kevin Ko, Jessica Felthousen-Rusbasan, Audra N. Iness, Tara J. Nulton, Brad E. Windle, Mikhail G. Dozmorov, Iain M. Morgan, Larisa Litovchick
Software Mentions: 2
Published: almost 4 years ago

10.3390/cancers12082077

Comprehensive Analysis of LincRNAs in Classical and Basal-Like Subtypes of Pancreatic Cancer
Cited by: 5
Author(s): Markus Glaß, Ágnes Dorn, Stefan Hüttelmaier, Monika Hämmerle, Tony Gutschner
Software Mentions: 2
Published: over 4 years ago

10.3390/cancers11060786

Collagen 1A1 (COL1A1) Is a Reliable Biomarker and Putative Therapeutic Target for Hepatocellular Carcinogenesis and Metastasis
Cited by: 123
Author(s): Hon Ping Ma, Hang Chang, Oluwaseun Adebayo Bamodu, Vijesh Kumar Yadav, Ting Huang, Alexander T.H. Wu, Chi Tai Yeh, Shin Han Tsai, Wei Hwa Lee
Software Mentions: 2
Published: over 5 years ago

10.1038/cddis.2015.65

Regulation of anti-apoptotic signaling by Kruppel-like factors 4 and 5 mediates lapatinib resistance in breast cancer
Cited by: 31
Author(s): Farrugia Mk, Sharma Sb, Lin Cc, Sarah L. McLaughlin, Vanderbilt Db, Ammer Ag, Mohamad A. Salkeni, Peter Stoilov, YM Agazie, CJ Creighton, Ruppert Jm
Software Mentions: 2
Published: over 9 years ago

10.1016/j.cmet.2019.07.013

Glucose-Dependent Insulinotropic Polypeptide Receptor-Expressing Cells in the Hypothalamus Regulate Food Intake
Cited by: 151
Author(s): Alice E. Adriaenssens, Emma K. Biggs, Tamana Darwish, John Tadross, Tanmay Sukthankar, Milind Girish, Joseph Polex-Wolf, Brain Y Lam, Ilona Zvetkova, Warren Pan, Davide Chiarugi, Giles S.H. Yeo, Clémence Blouet, Fiona M. Gribble, Frank Reimann
Software Mentions: 2
Published: about 5 years ago

10.1093/cercor/bhaa069

Heterogeneity in Brain Microstructural Development Following Preterm Birth
Cited by: 51
Author(s): Ralica Dimitrova, Maximilian Pietsch, Daan Christiaens, Judit Ciarrusta, Thomas Wolfers, Dafnis Batalle, Emer Hughes, Jana Hutter, Lucilio Cordero‐Grande, Anthony N. Price, Andrew Chew, Shona Falconer, Katy Vecchiato, Johannes K. Steinweg, Olivia Carney, Mary Rutherford, J-Donald Tournier, Serena J. Counsell, André F. Marquand, Daniel Rueckert, Joseph V. Hajnal, Gráinne McAlonan, A. David Edwards, Jonathan O’Muircheartaigh
Software Mentions: 2
Published: over 4 years ago

10.1002/clc.23224

Vitamin K antagonist vs direct oral anticoagulants with antiplatelet therapy in dual or triple therapy after percutaneous coronary intervention or acute coronary syndrome in atrial fibrillation: Meta‐analysis of randomized controlled trials
Cited by: 6
Author(s): Vincent Roule, P Ardouin, Clément Briet, Adrien Lemaître, Mathieu Bignon, Rémi Sabatier, Laure Champ‐Rigot, Paul Milliez, Katrien Blanchart, Farzin Beygui
Software Mentions: 2
Published: over 5 years ago

10.1007/s11999-015-4644-8

What Are the Long-term Results of MUTARS® Modular Endoprostheses for Reconstruction of Tumor Resection of the Distal Femur and Proximal Tibia?
Cited by: 82
Author(s): Michaël P. A. Bus, Michiel A. J. van de Sande, Marta Fiocco, Gerard R. Schaap, Jos A. M. Bramer, P. D. Sander Dijkstra
Software Mentions: 2
Published: over 7 years ago

10.1016/j.compenvurbsys.2018.01.004

Identifying residential neighbourhood types from settlement points in a machine learning approach
Cited by: 33
Author(s): Warren C. Jochem, Tomas J. Bird, Andrew J. Tatem
Software Mentions: 2
Published: over 6 years ago

10.1016/j.dib.2016.10.026

Data on quantification of signaling pathways activated by KIT and PDGFRA mutants
Cited by: 2
Author(s): Christelle Bahlawane, Martine Schmitz, Elisabeth Letellier, Karthik Arumugam, Nathalie Nicot, Petr V. Nazarov, Serge Haan
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.ydbio.2014.06.007

Staufen targets coracle mRNA to Drosophila neuromuscular junctions and regulates GluRIIA synaptic accumulation and bouton number
Cited by: 21
Author(s): Alejandra Gardiol, Daniel St Johnston
Software Mentions: 2
Published: over 10 years ago

10.1242/dmm.020263

The Menkes and Wilson disease genes counteract in copper toxicosis in Labrador retrievers: a new canine model for copper-metabolism disorders
Cited by: 57
Author(s): Hille Fieten, Y. Gill, Alan J. Martin, Mafalda Concilli, Karen Dirksen, Frank G. van Steenbeek, Bart Spee, T.S.G.A.M. van den Ingh, Ellen Martens, Paola Festa, Giancarlo Chesi, Bart van de Sluis, Roderick H. J. Houwen, Adrian Watson, Yurii S. Aulchenko, Victoria Hodgkinson, Sha Zhu, Michael J. Petris, Roman Polishchuk, P.A.J. Leegwater, J. Rothuizen
Software Mentions: 2
Published: almost 9 years ago