Ecosyste.ms: Papers

10.1186/s13395-020-00236-3

A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated muscle stem cell populations
Cited by: 109
Author(s): Andrea De Micheli, Jason A. Spector, Olivier Elemento, Benjamin D. Cosgrove
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-61178-w

Radiomics prognostication model in glioblastoma using diffusion- and perfusion-weighted MRI
Cited by: 41
Author(s): Ji Eun Park, Ho Sung Kim, Youngheun Jo, Roh Eul Yoo, Seung Hong Choi, Soo Jung Nam
Software Mentions: 3
Published: over 4 years ago

10.3389/fgene.2014.00043

Quality assessment and control of tissue specific RNA-seq libraries of Drosophila transgenic RNAi models
Cited by: 12
Author(s): Andreia J. Amaral, Francisco Brito, Tamar Chobanyan, S. Yoshikawa, Takakazu Yokokura, David Van Vactor, Margarida Gama‐Carvalho
Software Mentions: 3
Published: over 10 years ago

10.1002/ece3.3043

Effects of Alpine land‐use changes: Soil macrofauna community revisited
Cited by: 20
Author(s): Michael Steinwandter, Birgit C. Schlick‐Steiner, Gilg Seeber, Florian M. Steiner, Julia Seeber
Software Mentions: 3
Published: over 7 years ago

10.1111/1462-2920.14569

Competition and predation as possible causes of bacterial rarity
Cited by: 23
Author(s): Viola Kurm, Wim H. van der Putten, Simone Weidner, Stefan Geisen, L. Basten Snoek, Tanja Bakx, W. H. Gera Hol
Software Mentions: 3
Published: over 5 years ago

10.1002/sim.7628

Targeted maximum likelihood estimation for a binary treatment: A tutorial
Cited by: 70
Author(s): Miguel Ángel Luque-Fernandez, Michael Schomaker, Bernard Rachet, Mireille E. Schnitzer
Software Mentions: 3
Published: over 6 years ago

10.3389/fbioe.2020.00205

Rapid Physicochemical Changes in Microplastic Induced by Biofilm Formation
Cited by: 82
Author(s): Eric McGivney, Linnea Cederholm, Andreas Barth, Minna Hakkarainen, Evelyne Hamacher-Barth, Martin Ogonowski, Elena Gorokhova
Software Mentions: 3
Published: over 4 years ago

10.1002/sim.8450

Improving safety of the continual reassessment method via a modified allocation rule
Cited by: 8
Author(s): Pavel Mozgunov, Thomas Jaki
Software Mentions: 3
Published: almost 5 years ago

10.1177/0962280219873005

Simultaneous inference for multiple marginal generalized estimating equation models
Cited by: 8
Author(s): Robin Ristl, Ludwig A. Hothorn, Christian Ritz, Martin Posch
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-021-83274-1

Preservation of epoxyeicosatrienoic acid bioavailability prevents renal allograft dysfunction and cardiovascular alterations in kidney transplant recipients
Cited by: 4
Author(s): Thomas Duflot, Charlotte Laurent, Anne Soudey, Xavier Fonrose, M. Hamzaoui, Michèle Iacob, Dominique Bertrand, Julie Favre, Isabelle Étienne, Colette Roche, David Coquerel, M. Le Besnerais, Safa Louhichi, Tracy Tarlet, Dongyang Li, V. Brunel, Christophe Morisseau, Vincent Richard, Robinson Joannidès, Françoise Stanke‐Labesque, Fabien Lamoureux, Dominique Guerrot, J. Bellien
Software Mentions: 3
Published: almost 4 years ago

10.1002/ece3.3505

Residence time, native range size, and genome size predict naturalization among angiosperms introduced to Australia
Cited by: 9
Author(s): John P. Schmidt, John M. Drake, Patrick R. Stephens
Software Mentions: 3
Published: about 7 years ago

10.1002/ece3.6545

Lousy grouse: Comparing evolutionary patterns in Alaska galliform lice to understand host evolution and host–parasite interactions
Cited by: 9
Author(s): Andrew D. Sweet, R. E. Wilson, Sarah A. Sonsthagen, Kevin P. Johnson
Software Mentions: 3
Published: over 4 years ago

10.1038/tp.2016.101

Epigenetic differences in monozygotic twins discordant for major depressive disorder
Cited by: 37
Author(s): Karim Malki, Elena Koritskaya, Fraser Harris, Kevin Bryson, Mark Herbster, Maria Grazia Tosto
Software Mentions: 3
Published: over 8 years ago

10.3389/fcvm.2020.622236

Characteristics of Blood Metabolic Profile in Coronary Heart Disease, Dilated Cardiomyopathy and Valvular Heart Disease Induced Heart Failure
Cited by: 9
Author(s): Chang Liu, Ruihua Li, Yang Liu, Zhenguo Li, Yanan Sun, Peiyuan Yin, Rihong Huang
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-018-36300-8

Robust in-silico identification of Cancer Cell Lines based on RNA and targeted DNA sequencing data
Cited by: 1
Author(s): Raik Otto, Jan-Niklas Rössler, Christine Sers, Soulafa Mamlouk, Ulf Leser
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-020-73748-z

Demographic history and adaptive synonymous and nonsynonymous variants of nuclear genes in Rhododendron oldhamii (Ericaceae)
Cited by: 1
Author(s): Yi Chiang Hsieh, Chih-Hsiung Chang, Jeng Der Chung, Shih Ying Hwang
Software Mentions: 3
Published: about 4 years ago

10.3389/fcvm.2020.623012

Gene Expression Profiling Reveals the Shared and Distinct Transcriptional Signatures in Human Lung Epithelial Cells Infected With SARS-CoV-2, MERS-CoV, or SARS-CoV: Potential Implications in Cardiovascular Complications of COVID-19
Cited by: 27
Author(s): Pawan Kumar Jha, Aatira Vijay, Arda Halu, Shizuka Uchida, Masanori Aikawa
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-018-33693-4

RNA sequencing and de novo assembly of Solanum trilobatum leaf transcriptome to identify putative transcripts for major metabolic pathways
Cited by: 17
Author(s): Adil Lateef, Sudheesh K. Prabhudas, Purushothaman Natarajan
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-018-32514-y

Agricultural landscapes and the Loire River influence the genetic structure of the marbled newt in Western France
Cited by: 5
Author(s): Jean‐Marc Costanzi, Pascal Mège, Alexandre Boissinot, Françis Isselin-Nondedeu, Sarah M. Guérin, Olivier Lourdais, Audrey Trochet, Quentin Le Petitcorps, Agathe Legrand, François Varenne, Pierre Antoine Grillet, Sophie Morin-Pinaud, Damien Picard
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-018-27474-2

A Canonical Biophysical Model of the CsrA Global Regulator Suggests Flexible Regulator-Target Interactions
Cited by: 7
Author(s): Abigail N. Leistra, Grant Gelderman, Steven W. Sowa, Alex Moon-Walker, Howard M. Salis, Lydia M. Contreras
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-24508-7

Tracing of the fecal microbiota of commercial pigs at five growth stages from birth to shipment
Cited by: 72
Author(s): Geon Goo Han, Jun-Yeong Lee, Gwi-Deuk Jin, Jongbin Park, Yo Han Choi, Seoung-Hun Kang, B. J. Chae, Eun Bae Kim, Yun‐Jaie Choi
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-020-72735-8

Genome-wide association mapping for wheat blast resistance in CIMMYT’s international screening nurseries evaluated in Bolivia and Bangladesh
Cited by: 26
Author(s): Philomin Juliana, Xinyao He, Muhammad Rezaul Kabir, Krishna Kanta Roy, Md. Babul Anwar, Félix Marza, Jesse Poland, Sandesh Shrestha, Ravi P. Singh, Pawan Kumar Singh
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-019-46492-2

Global impact of diet and temperature over aquaculture of Octopus vulgaris paralarvae from a transcriptomic approach
Cited by: 24
Author(s): Pablo García-Fernández, María Prado-Álvarez, Manuel Nande, Daniel García de la serrana, C. Perales-Raya, E. Almansa, Inmaculada Varó, Camino Gestal
Software Mentions: 3
Published: over 5 years ago

10.1167/iovs.17-22173

Novel Myopia Genes and Pathways Identified From Syndromic Forms of Myopia
Cited by: 47
Author(s): Daniel Ian Flitcroft, James Loughman, Christine F. Wildsoet, Cathy Williams, Jeremy A. Guggenheim
Software Mentions: 3
Published: almost 7 years ago

10.12688/f1000research.19801.3

bwimage: A package to describe image patterns in natural structures
Cited by: 3
Author(s): Carlos Biagolini-Jr., Regina H. Macêdo
Software Mentions: 3
Published: over 4 years ago

10.1101/2020.08.22.262931

Theoretical basis for stabilizing messenger RNA through secondary structure design
Cited by: 16
Author(s): Hannah K. Wayment-Steele, Do Soon Kim, Christian A. Choe, John J Nicol, Roger Wellington-Oguri, Andrew Watkins, R Andres Parra Sperberg, Po-Ssu Huang, Eterna Participants, Rhiju Das
Software Mentions: 3
Published: about 4 years ago

10.3389/fgene.2021.618170

A Computational Framework for Pattern Detection on Unaligned Sequences: An Application on SARS-CoV-2 Data
Cited by: 0
Author(s): Nikolaos Pechlivanis, Anastasis Togkousidis, Maria Tsagiopoulou, Stefanos P. Sgardelis, Ilias Kappas, Fotis Psomopoulos
Software Mentions: 3
Published: over 3 years ago

10.1186/s13148-019-0619-z

Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors
Cited by: 16
Author(s): Songlin Li, Yuan Yuan, He Xiao, Jiajia Dai, Yunfei Ye, Qin Zhang, Zhimin Zhang, Yuhan Jiang, Jia Luo, Jing Hu, Chuan Chen, Ge Wang
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2014.00250

Phenome-wide association studies demonstrating pleiotropy of genetic variants within FTO with and without adjustment for body mass index
Cited by: 60
Author(s): Robert M. Cronin, Julie R. Field, Yuki Bradford, Christian M. Shaffer, Robert J. Carroll, Jonathan D. Mosley, Lisa Bastarache, Todd L. Edwards, Scott J. Hebbring, Simon Lin, Lucia A. Hindorff, Paul K. Crane, Sarah A. Pendergrass, Marylyn D. Ritchie, Dana C. Crawford, Jyotishman Pathak, Suzette J. Bielinski, David Carrell, David R. Crosslin, David H. Ledbetter, David J. Carey, Gerard Tromp, Marc S. Williams, Eric B. Larson, Gail P. Jarvik, Peggy L. Peissig, Murray H. Brilliant, Catherine A. McCarty, Christopher G. Chute, Iftikhar J. Kullo, Erwin Böttinger, Rex L. Chisholm, Maureen E. Smith, Dan M. Roden, Joshua C. Denny
Software Mentions: 3
Published: over 10 years ago

10.1038/s42003-018-0176-6

Incomplete lineage sorting rather than hybridization explains the inconsistent phylogeny of the wisent
Cited by: 76
Author(s): Kun Wang, Johannes A. Lenstra, Liang Liu, Quanjun Hu, Tao Ma, Qiang Qiu, Jianquan Liu
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-65115-9

Dichotomy between the transcriptomic landscape of naturally versus accelerated aged murine hearts
Cited by: 0
Author(s): Federica De Majo, Jana-Charlotte Hegenbarth, Frank Rühle, Christian Bär, Thomas Thum, Martine de Boer, Dirk J. Duncker, Blanche Schroen, Anne-Sophie Armand, Monika Stoll, León J. De Windt
Software Mentions: 3
Published: over 4 years ago

10.1128/mSphere.00482-19

Genomic Variation among Strains of <i>Crithidia bombi</i> and <i>C. expoeki</i>
Cited by: 7
Author(s): Evgeny S. Gerasimov, Niklaus Zemp, Regula Schmid‐Hempel, Paul Schmid‐Hempel, Vyacheslav Yurchenko
Software Mentions: 3
Published: about 5 years ago

10.1002/ece3.6412

Lunar synchronization of daily activity patterns in a crepuscular avian insectivore
Cited by: 17
Author(s): Ruben Evens, Céline Kowalczyk, Gabriel Norevik, Eddy Ulenaers, Batmunkh Davaasuren, Soddelgerekh Bayargur, Tom Artois, Susanne Åkesson, Anders Hedenström, Félix Liechti, Mihai Vâlcu, Bart Kempenaers
Software Mentions: 3
Published: over 4 years ago

10.3389/fgene.2020.622659

Identification of a Five-Gene Prognostic Model and Its Potential Drug Repurposing in Colorectal Cancer Based on TCGA, GTEx and GEO Databases
Cited by: 9
Author(s): Feng Yang, Shaoyi Cai, Ling Li, Haiji Zhang, Liang Tao, Qin Wang
Software Mentions: 3
Published: almost 4 years ago

10.1002/ece3.5858

Quantitative and qualitative consequences of reduced pollen loads in a mixed‐mating plant
Cited by: 10
Author(s): Laura Hildesheim, Øystein H. Opedal, W. Scott Armbruster, Christophe Pélabon
Software Mentions: 3
Published: almost 5 years ago

10.3390/foods10061218

Extending the Lipidome Coverage by Combining Different Mass Spectrometric Platforms: An Innovative Strategy to Answer Chemical Food Safety Issues
Cited by: 4
Author(s): Justine Marchand, Yann Guitton, Estelle Martineau, Anne-Lise Royer, David Balgoma, Bruno Le Bizec, Patrick Giraudeau, Gaud Dervilly
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.6159

Canadian polar bear population structure using genome‐wide markers
Cited by: 8
Author(s): Evelyn L. Jensen, Christina Tschritter, Peter van Coeverden de Groot, Kristen M. Hayward, Marsha Branigan, Markus Dyck, Rute B. G. Clemente-Carvalho
Software Mentions: 3
Published: over 4 years ago

10.1016/j.cub.2020.10.025

The Proteomic Landscape of Centromeric Chromatin Reveals an Essential Role for the Ctf19CCAN Complex in Meiotic Kinetochore Assembly
Cited by: 11
Author(s): Weronika E. Borek, Nadine Vincenten, Eris Duro, Vasso Makrantoni, Christos Spanos, Krishna K. Sarangapani, Flávia de Lima Alves, David A. Kelly, Charles L. Asbury, Juri Rappsilber, Adèle L. Marston
Software Mentions: 3
Published: almost 4 years ago

10.3389/fcimb.2021.615770

Differences in the Genital Microbiota in Women Who Naturally Clear Chlamydia trachomatis Infection Compared to Women Who Do Not Clear; A Pilot Study
Cited by: 9
Author(s): Patricia Dehon Mott, Christopher M. Taylor, Rebecca A. Lillis, Caleb M. Ardizzone, Hannah L. Albritton, Meng Luo, Kaitlyn G. Calabresi, David H. Martín, Leann Myers, Alison J. Quayle
Software Mentions: 3
Published: over 3 years ago

10.3390/s21072447

A BCI Based Alerting System for Attention Recovery of UAV Operators
Cited by: 8
Author(s): Jong-Hyuk Park, Jonghun Park, Dongmin Shin, Yerim Choi
Software Mentions: 3
Published: over 3 years ago

10.1128/mBio.00987-21

Shared and Unique Evolutionary Trajectories to Ciprofloxacin Resistance in Gram-Negative Bacterial Pathogens
Cited by: 7
Author(s): Jaime E. Zlamal, Semen A. Leyn, Mallika Iyer, Marinela L. Elane, Nicholas Wong, James W. Wamsley, Maarten Vercruysse, Fernando García-Alcalde, Andrei L. Osterman
Software Mentions: 3
Published: over 3 years ago

10.1002/joc.4326

Asymmetric trends in seasonal temperature variability in instrumental records from ten stations in Switzerland, Germany and the <scp>UK</scp> from 1864 to 2012
Cited by: 32
Author(s): Michael Matiu, Donna P. Ankerst, Annette Menzel
Software Mentions: 3
Published: over 9 years ago

10.1038/s41598-017-11508-2

Computational Cell Cycle Profiling of Cancer Cells for Prioritizing FDA-Approved Drugs with Repurposing Potential
Cited by: 25
Author(s): Yu‐Chen Lo, Silvia Senese, Bryan France, Ankur A. Gholkar, Robert Damoiseaux, Jorge Z. Torres
Software Mentions: 2
Published: about 7 years ago

10.1007/s11999-015-4644-8

What Are the Long-term Results of MUTARS® Modular Endoprostheses for Reconstruction of Tumor Resection of the Distal Femur and Proximal Tibia?
Cited by: 82
Author(s): Michaël P. A. Bus, Michiel A. J. van de Sande, Marta Fiocco, Gerard R. Schaap, Jos A. M. Bramer, P. D. Sander Dijkstra
Software Mentions: 2
Published: over 7 years ago

10.1016/j.compenvurbsys.2018.01.004

Identifying residential neighbourhood types from settlement points in a machine learning approach
Cited by: 33
Author(s): Warren C. Jochem, Tomas J. Bird, Andrew J. Tatem
Software Mentions: 2
Published: over 6 years ago

10.1016/j.dib.2016.10.026

Data on quantification of signaling pathways activated by KIT and PDGFRA mutants
Cited by: 2
Author(s): Christelle Bahlawane, Martine Schmitz, Elisabeth Letellier, Karthik Arumugam, Nathalie Nicot, Petr V. Nazarov, Serge Haan
Software Mentions: 2
Published: almost 8 years ago

10.1016/j.ydbio.2014.06.007

Staufen targets coracle mRNA to Drosophila neuromuscular junctions and regulates GluRIIA synaptic accumulation and bouton number
Cited by: 21
Author(s): Alejandra Gardiol, Daniel St Johnston
Software Mentions: 2
Published: over 10 years ago

10.1242/dmm.020263

The Menkes and Wilson disease genes counteract in copper toxicosis in Labrador retrievers: a new canine model for copper-metabolism disorders
Cited by: 57
Author(s): Hille Fieten, Y. Gill, Alan J. Martin, Mafalda Concilli, Karen Dirksen, Frank G. van Steenbeek, Bart Spee, T.S.G.A.M. van den Ingh, Ellen Martens, Paola Festa, Giancarlo Chesi, Bart van de Sluis, Roderick H. J. Houwen, Adrian Watson, Yurii S. Aulchenko, Victoria Hodgkinson, Sha Zhu, Michael J. Petris, Roman Polishchuk, P.A.J. Leegwater, J. Rothuizen
Software Mentions: 2
Published: almost 9 years ago

10.15252/emmm.201910491

Macrophages induce malignant traits in mammary epithelium via IKKε/TBK1 kinases and the serine biosynthesis pathway
Cited by: 9
Author(s): Ewa Wilcz-Villega, Edward Carter, Alastair Ironside, Ruoyan Xu, Isabella Mataloni, Julie Holdsworth, William Edward Jones, Rocío Moreno Béjar, Lukas Uhlik, Robert Bentham, Susana A. Godinho, Jesmond Dalli, Richard Grose, György Szabadkai, Louise Jones, Kairbaan Hodivala‐Dilke, Katiuscia Bianchi
Software Mentions: 2
Published: almost 5 years ago

10.15252/emmm.201910852

A thiol‐bound drug reservoir enhances APR‐246‐induced mutant p53 tumor cell death
Cited by: 20
Author(s): Sophia Ceder, Sofi Eriksson, Emarndeena H Cheteh, Swati Dawar, Mariana Corrales Benitez, Vladimir J. N. Bykov, Kenji M. Fujihara, Mélodie Grandin, Xiaodun Li, Susanne Ramm, Corina Behrenbruch, Kaylene J. Simpson, Frédéric Hollande, Lars Abrahmsén, Nicholas J. Clemons, Klas G. Wiman
Software Mentions: 2
Published: almost 4 years ago

10.17179/excli2017-752

The predictive value of pre- and post-induction chemotherapy plasma EBV DNA level and tumor volume for the radiosensitivity of locally advanced nasopharyngeal carcinoma.
Cited by: 6
Author(s): Yang Song, He Xiao, Zhenzhou Yang, Mingying Geng, Jungang Ma, Yujiang Ren, Yun Liu, Ge Wang
Software Mentions: 2
Published: almost 8 years ago

10.1002/ece3.3116

A novel meta-analytical approach to improve systematic review of rates and patterns of microevolution
Cited by: 3
Author(s): Lucas D. Gorné, Sandra Dı́az
Software Mentions: 2
Published: over 7 years ago

10.1002/ece3.736

Multivariate sexual selection on male song structure in wild populations of sagebrush crickets,Cyphoderris strepitans(Orthoptera: Haglidae)
Cited by: 11
Author(s): Geoffrey D. Ower, Kevin A. Judge, Sandra Steiger, Kyle J. Caron, Rebecca A. Smith, John Hunt, Scott K. Sakaluk
Software Mentions: 2
Published: over 11 years ago

10.1002/ece3.7668

Range‐wide breeding habitat use of the critically endangered Yellow‐breasted Bunting<i>Emberiza aureola</i>after population collapse
Cited by: 3
Author(s): Ilka Beermann, Alexander Thomas, Yury Anisimov, Marc Bastardot, Nyambayar Batbayar, Batmunkh Davaasuren, Yu.N. Gerasimov, Makoto Hasebe, G. L. Nakul, Jugdernamjil Nergui, Pavel Ktitorov, Olga Kulikova, Wieland Heim
Software Mentions: 2
Published: over 3 years ago

10.1002/ece3.2570

Dominance in a ground‐dwelling ant community of banana agroecosystem
Cited by: 12
Author(s): Dominique Carval, Violaine Cotté, Rémi Resmond, Benjamin Perrin, Philippe Tixier
Software Mentions: 2
Published: about 8 years ago

10.1002/ece3.897

Invasion biology in non‐free‐living species: interactions between abiotic (climatic) and biotic (host availability) factors in geographical space in crayfish commensals (Ostracoda, Entocytheridae)
Cited by: 14
Author(s): Alexandre Mestre, Josep A. Aguilar-Alberola, D. A. T. Baldry, Hüsamettin Balkıs, Adam Ellis, José A. Gil‐Delgado, Karsten Grabow, Göran Klobučar, Antonín Kouba, Ivana Maguire, Andreas Martens, Ayşegül Mülayim, Juan Rueda, Burkhard Scharf, Menno Soes, Juan S. Monrós, Francesc Mesquita‐Joanes
Software Mentions: 2
Published: almost 11 years ago

10.1002/ece3.7490

Ancestral ecological regime shapes reaction to food limitation in the Least Killifish, <i>Heterandria</i><i> </i><i>formosa</i>
Cited by: 3
Author(s): Anja Felmy, Jeff Leips, Joseph Travis
Software Mentions: 2
Published: over 3 years ago

10.1002/ecy.3181

Scale‐dependent effects of host patch traits on species composition in a stickleback parasite metacommunity
Cited by: 17
Author(s): Daniel I. Bolnick, Emlyn J. Resetarits, Kimberly M. Ballare, Yoel E. Stuart, William E. Stutz
Software Mentions: 2
Published: about 4 years ago

10.1111/1462-2920.14297

Bacterial interactions during sequential degradation of cyanobacterial necromass in a sulfidic arctic marine sediment
Cited by: 39
Author(s): Albert Müller, Claus Pelikan, Júlia R. de Rezende, Kenneth Wasmund, Martina Putz, Clemens Glombitza, Kasper Urup Kjeldsen, Bo Barker Jørgensen, Alexander Loy
Software Mentions: 2
Published: over 6 years ago

10.1111/1758-2229.12684

Newly designed 16S rRNA metabarcoding primers amplify diverse and novel archaeal taxa from the environment
Cited by: 80
Author(s): Mohammad Bahram, Sten Anslan, Falk Hildebrand, Peer Bork, Leho Tedersoo
Software Mentions: 2
Published: about 6 years ago

10.1186/1756-8935-7-5

The PEG13-DMR and brain-specific enhancers dictate imprinted expression within the 8q24 intellectual disability risk locus
Cited by: 43
Author(s): Franck Court, Cristina Camprubí, Cristina Vicente-García, Amy Guillaumet-Adkins, Ángela Sparago, Davide Seruggia, Juan Sandoval, Manel Esteller, Alex Martín‐Trujillo, Andrea Riccio, Lluı́s Montoliu, David Gabriel Monk
Software Mentions: 2
Published: over 10 years ago

10.1007/s10654-015-0039-0

Reference ranges and determinants of total hCG levels during pregnancy: the Generation R Study
Cited by: 83
Author(s): Tim I M Korevaar, Eric A.P. Steegers, Yolanda B. de Rijke, Sarah Schalekamp‐Timmermans, Willy Visser, Albert Hofman, Vincent W. V. Jaddoe, Henning Tiemeier, Theo J. Visser, Marco Medici, Robin P. Peeters
Software Mentions: 2
Published: over 9 years ago

10.1038/s41431-019-0563-6

TCTEX1D1 is a genetic modifier of disease progression in Duchenne muscular dystrophy
Cited by: 29
Author(s): Pietro Spitali, Irina Zaharieva, Stefan Böhringer, Monika Hiller, Amina Chaouch, Andreas Roos, C. Scotton, Mireille Claustres, Luca Bello, Craig McDonald, Eric P. Hoffman, Cinrg Investigators, Z. Koeks, H. Eka D. Suchiman, Sebahattin Çırak, Mariacristina Scoto, Mojgan Reza, Peter A C ‘t Hoen, Erik H. Niks, Sylvie Tuffery‐Giraud, Hanns Lochmüller, Alessandra Ferlini, Francesco Muntoni, Annemieke Aartsma‐Rus
Software Mentions: 2
Published: almost 5 years ago

10.12688/f1000research.25593.1

SARS-CoV-2 meta-interactome suggests disease-specific, autoimmune pathophysiologies and therapeutic targets
Cited by: 11
Author(s): Gianmarco Bellucci, Chiara Ballerini, Rosella Mechelli, Rachele Bigi, Virginia Rinaldi, Roberta Reniè, Maria Chiara Buscarinu, Sergio E. Baranzini, Lohith Madireddy, Giuseppe Matarese, Marco Salvetti, Giovanni Ristori
Software Mentions: 2
Published: over 4 years ago

10.12688/f1000research.53874.2

Rates and predictors of data and code sharing in the medical and health sciences: Protocol for a systematic review and individual participant data meta-analysis.
Cited by: 5
Author(s): Daniel G Hamilton, Hannah Fraser, Fiona Fidler, Steve McDonald, Anisa Rowhani-Farid, Kyungwan Hong, Matthew J. Page
Software Mentions: 2
Published: about 3 years ago

10.1002/2211-5463.12964

LMTK3 promotes tumorigenesis in bladder cancer via the ERK/MAPK pathway
Cited by: 15
Author(s): Tao Jiang, Xia Lu, Feiya Yang, Mingshuai Wang, Hua Yang, Nianzeng Xing
Software Mentions: 2
Published: about 4 years ago

10.1186/s12987-020-00208-1

Contribution of brain pericytes in blood–brain barrier formation and maintenance: a transcriptomic study of cocultured human endothelial cells derived from hematopoietic stem cells
Cited by: 27
Author(s): Marjolein Heymans, Ricardo Figueiredo, Lucie Dehouck, David Francisco, Yuichi Sano, Fumitaka Shimizu, Takashi Kanda, Rémy Bruggmann, Britta Engelhardt, Peter Winter, Fabien Gosselet, Maxime Culot
Software Mentions: 2
Published: over 4 years ago

10.3389/fnagi.2018.00155

Associations of MAP2K3 Gene Variants With Superior Memory in SuperAgers
Cited by: 19
Author(s): Matthew J. Huentelman, Ignazio S. Piras, Ashley L. Siniard, Matthew De Both, Ryan Richholt, Chris Balak, Pouya Jamshidi, Eileen H. Bigio, Sandra Weıntraub, Emmaleigh Loyer, Marek-Marsel Mesulam, Changiz Geula, Emily Rogalskı
Software Mentions: 2
Published: over 6 years ago

10.3389/fcell.2020.00629

A Novel Ten-Gene Signature Predicting Prognosis in Hepatocellular Carcinoma
Cited by: 52
Author(s): Taicheng Zhou, Zhihua Cai, Ning Ma, Wenzhuan Xie, Chan Gao, Mengli Huang, Yuezong Bai, Yangpeng Ni, Yunqiang Tang
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2020.00963

Correlation Analysis of Expression Profile and Quantitative iTRAQ-LC-MS/MS Proteomics Reveals Resistance Mechanism Against TuMV in Chinese Cabbage (Brassica rapa ssp. pekinensis)
Cited by: 10
Author(s): Shanwu Lyu, Liwei Gao, Rujia Zhang, Changwei Zhang, Xilin Hou
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2017.00231

Using RNA Sequence and Structure for the Prediction of Riboswitch Aptamer: A Comprehensive Review of Available Software and Tools
Cited by: 29
Author(s): Deborah Antunes, Natasha Andressa Nogueira Jorge, Ernesto R. Caffarena, Fábio Passetti
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2020.00664

The Chromosome-Level Genome Assembly and Comprehensive Transcriptomes of the Razor Clam (Sinonovacula constricta)
Cited by: 15
Author(s): Yan Dong, Qifan Zeng, Jianfeng Ren, Hanhan Yao, Liyuan Lv, Lin He, Wenbin Ruan, Qinggang Xue, Zhenmin Bao, Shi Wang, Lin Zhang
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2019.00274

Assessment of Autozygosity Derived From Runs of Homozygosity in Jinhua Pigs Disclosed by Sequencing Data
Cited by: 40
Author(s): Zhi-Hong Xu, Hao Sun, Zhe Zhang, Qi Zhao, Babatunde Shittu Olasege, Qiumeng Li, Yumei Yang, Peipei Ma, Xiangzhe Zhang, Qishan Wang, Yuchun Pan
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-017-16673-y

A Novel Communication Value Task Demonstrates Evidence of Response Bias in Cases with Presbyacusis
Cited by: 3
Author(s): Mark A. Eckert, Kenneth I. Vaden, Susan Teubner‐Rhodes, Brandon S. Bentzley
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-017-16627-4

A flexible ontology for inference of emergent whole cell function from relationships between subcellular processes
Cited by: 24
Author(s): Jens Hansen, David Meretzky, Simeneh Woldesenbet, Gustavo Stolovitzky, Ravi Iyengar
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-22471-x

A Prognostic Nomogram for Postoperative Bone Remodeling in Patients with ADDWoR
Cited by: 13
Author(s): Xiaohan Liu, Pei Shen, Xiangyu Wang, Sam Zhang, Jiawei Zheng, Yang Chen
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-25826-6

Transcriptome and Co-Expression Network Analyses Identify Key Genes Regulating Nitrogen Use Efficiency in Brassica juncea L.
Cited by: 31
Author(s): Parul Goel, Nitesh Kumar Sharma, Monika Bhuria, Vishal Sharma, Rashi Chauhan, Shivalika Pathania, Mohit Kumar Swarnkar, Vandna Chawla, Vishal Acharya, Ravi Shankar, Anil Kumar Singh
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-39040-5

Removing the no-analogue bias in modern accelerated tree growth leads to stronger medieval drought
Cited by: 15
Author(s): Tobias Scharnweber, Karl Uwe Heußner, Marko Smiljanić, Ingo Heinrich, Marieke van der Maaten‐Theunissen, Ernst van der Maaten, Thomas Struwe, Allan Buras, Martin Wilmking
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-40834-w

Genetic overlap between birthweight and adult cardiometabolic diseases has implications for genomic medicine
Cited by: 5
Author(s): Fasil Tekola‐Ayele, Anthony Lee, Tsegaselassie Workalemahu, Wei Emma Zhang, Deepika Shrestha, Azmeraw T. Amare, Marion Ouidir
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-43036-6

Long-term trends, current status, and transitions of water quality in Chesapeake Bay
Cited by: 48
Author(s): Lawrence W. Harding, Michael E. Mallonee, Elgin S. Perry, W. David Miller, Jason E. Adolf, Charles L. Gallegos, Hans W. Paerl
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-48227-9

Metabolomic characterization of myocardial ischemia-reperfusion injury in ST-segment elevation myocardial infarction patients undergoing percutaneous coronary intervention
Cited by: 30
Author(s): Arun Surendran, Michel Aliani, Amir Ravandi
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-49836-0

Temporal changes in transcriptome profile provide insights of White Spot Syndrome Virus infection in Litopenaeus vannamei
Cited by: 27
Author(s): Luca Peruzza, M. S. Shekhar, Karthik Kumar, A. Swathi, K. Karthic, Chris Hauton, K.K. Vijayan
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-61017-y

Transcriptomic and computational analysis identified LPA metabolism, KLHL14 and KCNE3 as novel regulators of Epithelial-Mesenchymal Transition
Cited by: 7
Author(s): Valeria Di Lollo, Angelo Canciello, Massimiliano Orsini, Nicola Bernabò, Massimo Ancora, Marta Di Federico, Valentina Curini, Mauro Mattioli, Valentina Russo, Annunziata Mauro, Cesare Cammà, Barbara Barboni
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-63538-y

Phenology of reproductive condition varies with age and spring weather conditions in male Myotis daubentonii and M. nattereri (Chiroptera: Vespertilionidae)
Cited by: 12
Author(s): Danielle M. Linton, David W. Macdonald
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-64031-2

Common genetic variation in obesity, lipid transfer genes and risk of Metabolic Syndrome: Results from IDEFICS/I.Family study and meta-analysis
Cited by: 21
Author(s): Rajini Nagrani, Ronja Foraita, Francesco Gianfagna, Licia Iacoviello, Staffan Mårild, Nathalie Michels, Dénes Molnár, Luís A. Moreno, Paola Russo, Toomas Veidebaum, Wolfgang Ahrens, Manuela Marron
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-67874-x

Genome-wide mapping and allelic fingerprinting provide insights into the genetics of resistance to wheat stripe rust in India, Kenya and Mexico
Cited by: 7
Author(s): Philomin Juliana, Ravi P. Singh, Julio Huerta Espino, Sridhar Bhavani, M. S. Randhawa, Uttam Kumar, Arun Kumar Joshi, Pradeep Kumar Bhati, Héctor Eduardo Villaseñor Mir, C. N. Mishra, Gyanendra Pratap Singh
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-77547-4

Immunoinformatic design of a COVID-19 subunit vaccine using entire structural immunogenic epitopes of SARS-CoV-2
Cited by: 41
Author(s): Esmaeil Behmard, Bijan Soleymani, Ali Najafi, Ebrahim Barzegari
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-81240-5

Capture and return of sexual genomes by hybridogenetic frogs provides clonal genome enrichment in a sexual species
Cited by: 4
Author(s): Marie Doležálková-Kaštánková, Glib Mazepa, Daniel L. Jeffries, Nicolas Perrin, Marcela Plötner, Jörg Plötner, Gaston‐Denis Guex, Peter Mikulíček, Albert J. Poustka, José Horacio Grau, Lukáš Choleva
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-85376-2

Drivers and constraints on offshore foraging in harbour seals
Cited by: 9
Author(s): Heather Vance, Sascha K. Hooker, Lonnie Mikkelsen, Abbo van Neer, Jonas Teilmann, Ursula Siebert, Mark Johnson
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-98536-1

Dissection of the bone marrow microenvironment in hairy cell leukaemia identifies prognostic tumour and immune related biomarkers
Cited by: 6
Author(s): Rachel Koldej, Ashvind Prabahran, Chin Wee Tan, Ashley P Ng, Melissa J. Davis, David Ritchie
Software Mentions: 2
Published: about 3 years ago

10.1038/s41598-021-99396-5

A prediction model using 2-propanol and 2-butanone in urine distinguishes breast cancer
Cited by: 3
Author(s): Shoko Kure, Sera Satoi, T Kitayama, Yuta Nagase, Nobuo Nakano, Marina Yamada, Noboru Uchiyama, Satoshi Miyashita, S. Iida, Hiroyuki Takei, Masao Miyashita
Software Mentions: 2
Published: about 3 years ago

10.3390/s150101825

Inertial Sensor Self-Calibration in a Visually-Aided Navigation Approach for a Micro-AUV
Cited by: 21
Author(s): Francisco Bonin‐Font, Miquel Massot-Campos, Pep Lluis Negre-Carrasco, Gabriel Oliver-Codina, Joan Pau Beltrán
Software Mentions: 2
Published: almost 10 years ago

10.3390/s21113927

Application of Low-Cost MEMS Spectrometers for Forest Topsoil Properties Prediction
Cited by: 4
Author(s): Felix Thomas, Rainer Petzold, Carina Becker, Ulrike Werban
Software Mentions: 2
Published: over 3 years ago

10.1007/s00127-020-01843-7

Network structure of depression symptomology in participants with and without depressive disorder: the population-based Health 2000–2011 study
Cited by: 16
Author(s): Christian Hakulinen, Eiko I. Fried, Laura Pulkki‐Råback, Marianna Virtanen, Jaana Suvisaari, Marko Elovainio
Software Mentions: 2
Published: almost 5 years ago

10.1186/s40064-016-2809-x

SentiHealth: creating health-related sentiment lexicon using hybrid approach
Cited by: 46
Author(s): Muhammad Zubair Asghar, Shakeel Ahmad, Maria Qasim, Syeda Rabail Zahra, Fazal Masud Kundi
Software Mentions: 2
Published: over 8 years ago

10.1038/tp.2016.268

The early growth response protein 1-miR-30a-5p-neurogenic differentiation factor 1 axis as a novel biomarker for schizophrenia diagnosis and treatment monitoring
Cited by: 47
Author(s): S Liu, F Zhang, Yin Yao Shugart, Lei Yang, X Li, Z Liu, Ning Sun, Chunxia Yang, Xiangjie Guo, Jie Shi, L Wang, Li Cheng, K Zhang, Taisheng Yang, Yong Xu
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41398-020-01097-6

Alterations in acylcarnitines, amines, and lipids inform about the mechanism of action of citalopram/escitalopram in major depression
Cited by: 39
Author(s): Siamak MahmoudianDehkordi, Ahmed T. Ahmed, Sudeepa Bhattacharyya, Xianlin Han, Rebecca Baillie, Matthias Arnold, Michelle Skime, Lisa St. John-Williams, M. Arthur Moseley, J. Will Thompson, Gregory Louie, Patricio Riva‐Posse, W. Edward Craighead, William M. McDonald, Ranga Krishnan, A. John Rush, Mark A. Frye, Boadie W. Dunlop, Richard M. Weinshilboum, Rima Kaddurah‐Daouk, Rima Kaddurah‐Daouk, A. John Rush, Jessica D. Tenenbaum, Arthur Moseley, Will J. Thompson, Gregory Louie, Colette Blach, Siamak Mahmoudiandehkhordi, Rebecca Baillie, Xianlin Han, Sudeepa Bhattacharyya, Mark A. Frye, Richard M. Weinshilboum, Ahmed Ahmed, Drew Neavin, Duan Liu, Michelle Skime, Piero Rinaldo, Oliver Fiehn, Christopher Brydges, Helen S. Mayberg, Ki Sueng Choi, Jung-Ho Cha, Gabi Kastenmüller, Matthias Arnold, Elisabeth B. Binder, Janine Knauer-Arloth, Alejo J. Nevado‐Holgado, Lei Shi, Boadie W. Dunlop, Ed Craighead, William M. McDonald, Patricio Riva Posse, Brenda W. J. H. Penninx, Yuri Milaneschi, Rick Jansen, Ranga Krishnan
Software Mentions: 2
Published: over 3 years ago

10.1186/s40246-019-0202-x

Shared genetic underpinnings of childhood obesity and adult cardiometabolic diseases
Cited by: 17
Author(s): Fasil Tekola‐Ayele, Anthony Lee, Tsegaselassie Workalemahu, Katy Sánchez-Pozos
Software Mentions: 2
Published: over 5 years ago

10.1038/s41396-018-0214-x

Environmental radiation alters the gut microbiome of the bank vole Myodes glareolus
Cited by: 45
Author(s): Anton Lavrinienko, Tapio Mappes, Eugene Tukalenko, Timothy A. Mousseau, Anders Pape Møller, Rob Knight, James T. Morton, Luke R. Thompson, Phillip C. Watts
Software Mentions: 2
Published: over 6 years ago

10.1186/s12966-019-0892-4

Isotemporal substitution of inactive time with physical activity and time in bed: cross-sectional associations with cardiometabolic health in the PREDIMED-Plus study
Cited by: 22
Author(s): Aina María Galmés-Panadés, Verónica Varela-Mato, Jadwiga Konieczna, Julia Wärnberǵ, Miguel Ángel Martínez‐González, Dolores Corella, Helmut Schröder, Jesús Vioque, Ángel M. Alonso‐Gómez, J. Alfredo Martínéz, Luís Serra-Majem, Ramón Estruch, Francisco J. Tinahones, José Lapetra, Xavier Pintó, Josep A. Tur, Antonio García‐Rios, Blanca Riquelme-Gallego, José J. Gaforio, Pilar Matía‐Martín, Lidia Daimiel, Rafael Manuel Micó Pérez, Josep Vidal, Clotilde Vázquez, Emilio Ros, Ana García‐Arellano, Andrés Díaz‐López, Eva M. Asensio, Olga Castañer, Francisca Fiol, Luis Alfredo Mira-Castejón, Anai Moreno Rodríguez, Juan Carlos Benavente Marín, Itziar Abete, Laura Tomaino, Rosa Casas, F. Javier Barón López, José Carlos Fernández-García, José Manuel Santos‐Lozano, Ana Galera, Catalina M. Mascaró, Cristina Razquín, Christopher Papandreou, Olga Portolés, Karla Alejandra Pérez-Vega, Miguel Fiol, Laura Compañ-Gabucio, Jessica Vaquero-Luna, Miguel Ruiz‐Canela, Nerea Becerra‐Tomás, Montserrat Fitó, Dora Romaguera
Software Mentions: 2
Published: almost 5 years ago