pypi: package | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0230865

Guano morphology has the potential to inform conservation strategies in British bats
Cited by: 4
Author(s): Roselyn Ware, Benjamin Garrod, Hannah Macdonald, Robin G. Allaby
Software Mentions: 3
Published: over 6 years ago

10.1186/s12933-021-01299-2

Metabolic syndrome and the plasma proteome: from association to causation
Cited by: 16
Author(s): Mohamed A. Elhadad, Rory Wilson, Shaza B. Zaghlool, Cornelia Huth, Christian Gieger, Harald Grallert, Johannes Graumann, Wolfgang Rathmann, Wolfgang Köenig, Moritz F. Sinner, Kristian Hveem, Karsten Suhre, Barbara Thorand, Christian Jonasson, Mélanie Waldenberger, Annette Peters
Software Mentions: 3
Published: over 5 years ago

10.1186/2049-3002-2-18

Metabolic reprogramming induced by ketone bodies diminishes pancreatic cancer cachexia
Cited by: 179
Author(s): Surendra K. Shukla, Teklab Gebregiworgis, Vinee Purohit, Nina V. Chaika, Venugopal Gunda, Prakash Radhakrishnan, Kamiya Mehla, Iraklis I. Pipinos, Robert Powers, Fang Yu, Pankaj K. Singh
Software Mentions: 3
Published: about 12 years ago

10.1093/gbe/evw077

“Every Gene Is Everywhere but the Environment Selects”: Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis
Cited by: 80
Author(s): Marco Fondi, Antti Karkman, Manu Tamminen, Emanuele Bosi, Marko Virta, Renato Fani, Eric J. Alm, James O. McInerney
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0117439

Effects of the Diet on the Microbiota of the Red Palm Weevil (Coleoptera: Dryophthoridae)
Cited by: 65
Author(s): Matteo Montagna, Bessem Chouaia, Giuseppe Mazza, Erica M. Prosdocimi, Elena Crotti, Valeria Mereghetti, Violetta Vacchini, Annamaria Giorgi, Alessio De Biase, S. Longo, Rita Cervo, G.C. Lozzia, Alberto Alma, Claudio Bandi, Daniele Daffonchio
Software Mentions: 3
Published: over 11 years ago

10.1534/g3.119.400347

Genome-Wide Association and Gene Co-expression Network Analyses Reveal Complex Genetics of Resistance to Goss’s Wilt of Maize
Cited by: 2
Author(s): Amritpal Singh, Guangyong Li, Alex B. Brohammer, Diego Jarquín, Candice N. Hirsch, James R. Alfano, Aaron J. Lorenz
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0251827

Multiple spatial reference frames underpin perceptual recalibration to audio-visual discrepancies
Cited by: 8
Author(s): David Watson, Michael A. Akeroyd, Neil W. Roach, Ben S. Webb
Software Mentions: 3
Published: over 5 years ago

10.1002/cam4.1107

Comparative proteomic profiling of the serum differentiates pancreatic cancer from chronic pancreatitis
Cited by: 34
Author(s): Mayank Saraswat, Sakari Joenväärä, Hanna Seppänen, Harri Mustonen, Caj Haglund, Risto Renkonen
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0143436

Analysis of Stage-Specific Gene Expression Profiles in the Uterine Endometrium during Pregnancy in Pigs
Cited by: 17
Author(s): Mingoo Kim, Heewon Seo, Yohan Choi, Inkyu Yoo, Minseok Seo, Chang Kyu Lee, Heebal Kim, Hakhyun Ka
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0038347

Inhibition of Specific NF-κB Activity Contributes to the Tumor Suppressor Function of 14-3-3σ in Breast Cancer
Cited by: 25
Author(s): Julia Inglés‐Esteve, M.L González Morales, Alba Dalmases, Ricard Garcia-Carbonell, Alba Jené-Sanz, Núria López‐Bigas, Mar Iglesias, Cristina Ruiz-Herguido, Ana Rovira, Federico Rojo, Joan Albanell, Roger R. Gomis, Anna Bigas, Lluís Espinosa
Software Mentions: 3
Published: over 14 years ago

10.1002/cam4.961

Nonpromoter methylation of the CDKN2A gene with active transcription is associated with improved locoregional control in laryngeal squamous cell carcinoma
Cited by: 12
Author(s): Miriam M. Ben-Dayan, Thomas J. Ow, Thomas J. Belbin, Joshua Wetzler, Richard V. Smith, Geoffrey Childs, Brenda Diergaarde, D. Neil Hayes, Jennifer R. Grandis, Michael B. Prystowsky, Nicolas F. Schlecht
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0070017

Genes Dysregulated to Different Extent or Oppositely in Estrogen Receptor-Positive and Estrogen Receptor-Negative Breast Cancers
Cited by: 12
Author(s): Xianxiao Zhou, Tao Shi, Bailiang Li, Yuannv Zhang, Xiaopei Shen, Hongdong Li, Hong Guan, Chunyang Liu, Zheng Guo
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pone.0245685

Brain organoid formation on decellularized porcine brain ECM hydrogels
Cited by: 44
Author(s): Robin Simsa, Theresa S.P. Rothenbücher, Hakan Gürbüz, Nidal Ghosheh, Jenny Emnéus, Lachmi Jenndahl, David L. Kaplan, Niklas Bergh, Alberto Martínez Serrano, Per Fogelstrand
Software Mentions: 3
Published: over 5 years ago

10.1002/prot.25094

FF12MC: A revised AMBER forcefield and new protein simulation protocol
Cited by: 34
Author(s): Yuan Ping Pang
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0141830

Discovery of Genome-Wide Microsatellite Markers in Scombridae: A Pilot Study on Albacore Tuna
Cited by: 5
Author(s): Natacha Nikolic, Stéphanie Duthoy, Antoine Destombes, Nathalie Bodin, Wendy West, Alexis Puech, Jérôme Bourjea
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0059927

Pyrosequencing Reveals High-Temperature Cellulolytic Microbial Consortia in Great Boiling Spring after In Situ Lignocellulose Enrichment
Cited by: 39
Author(s): Joseph P. Peacock, Jesse Cole, Senthil K. Murugapiran, Jeremy A. Dodsworth, James S. Fisher, Duane P. Moser, Brian P. Hedlund
Software Mentions: 3
Published: over 13 years ago

10.1186/gb-2004-5-11-r94

Cited by: 131
Author(s): Stephen Swift, Allan Tucker, Veronica Vinciotti, Nigel Martin, Christine A. Orengo, Xiaohui Liu, Paul Kellam
Software Mentions: 3
Published: almost 23 years ago

10.1371/journal.pone.0008320

Applied Climate-Change Analysis: The Climate Wizard Tool
Cited by: 158
Author(s): Evan H. Girvetz, Chris Zganȷar, George T. Raber, Edwin P. Maurer, Peter Kareiva, Joshua J. Lawler
Software Mentions: 3
Published: almost 17 years ago

10.1186/s12859-020-03592-5

Methylation data imputation performances under different representations and missingness patterns
Cited by: 11
Author(s): Pietro Di Lena, Claudia Sala, Andrea Prodi, Christine Nardini
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0080540

Association Testing Strategy for Data from Dense Marker Panels
Cited by: 1
Author(s): Donghyung Lee, Silviu‐Alin Bacanu
Software Mentions: 3
Published: almost 13 years ago

10.1186/s13059-014-0412-4

Non-targeted transcription factors motifs are a systemic component of ChIP-seq datasets
Cited by: 55
Author(s): Rebecca Worsley Hunt, Wyeth W. Wasserman
Software Mentions: 3
Published: over 12 years ago

10.1186/gb-2014-15-5-r71

A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions
Cited by: 28
Author(s): Alayne Brunner, Jun Li, Xiangqian Guo, Robert T. Sweeney, Sushama Varma, Shirley Zhu, Rui Li, Robert Tibshirani, Robert B. West
Software Mentions: 3
Published: almost 13 years ago

10.1186/s13059-014-0567-z

The draft genome of Primula veris yields insights into the molecular basis of heterostyly
Cited by: 90
Author(s): Michael Nowak, Giancarlo Russo, Ralph Schlapbach, Cuong Nguyen Huu, Michael Lenhard, Elena Conti
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0114047

Statistical Modeling of the Abundance of Vectors of West African Rift Valley Fever in Barkédji, Senegal
Cited by: 19
Author(s): Cheikh Talla, Diawo Diallo, Ibrahima Dia, Yamar Bâ, Jacques André Ndione, Amadou Alpha Sall, Andrew P. Morse, Aliou Diop, Mawlouth Diallo
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0193301

Association of whole blood n-6 fatty acids with stunting in 2-to-6-year-old Northern Ghanaian children: A cross-sectional study
Cited by: 17
Author(s): Mary Adjepong, C. Austin Pickens, Raghav Jain, William S. Harris, Reginald Adjetey Annan, Jenifer I. Fenton
Software Mentions: 3
Published: over 8 years ago

10.1186/s13059-014-0414-2

Discovery of novel transcripts and gametophytic functions via RNA-seq analysis of maize gametophytic transcriptomes
Cited by: 67
Author(s): Antony M. Chettoor, Scott A. Givan, Rex A. Cole, Clayton T Coker, Erica Unger-Wallace, Zuzana Vejlupkova, Erik Vollbrecht, John E. Fowler, Evans Mulenga
Software Mentions: 3
Published: over 12 years ago

10.1186/s13059-019-1923-9

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
Cited by: 52
Author(s): Serena Manara, Francesco Asnicar, Francesco Beghini, Davide Bazzani, Fabio Cumbo, Moreno Zolfo, Eleonora Nigro, Nicolai Karcher, Paolo Manghi, Marisa Isabell Metzger, Edoardo Pasolli, Nicola Segata
Software Mentions: 3
Published: almost 7 years ago

10.1186/s12263-020-00680-2

DNA methylation during human adipogenesis and the impact of fructose
Cited by: 7
Author(s): Giulia Tini, Vijayalakshmi Varma, Rosario Lombardo, Greg T. Nolen, Grégory Lefebvre, Patrick Descombes, Sylviane Métairon, Corrado Priami, Jim Kaput, Marie Pier Scott-Boyer
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0165823

Transcriptome Profiling of the Phaseolus vulgaris - Colletotrichum lindemuthianum Pathosystem
Cited by: 37
Author(s): Bilal A. Padder, Kelvin Kamfwa, Halima E. Awale
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0095347

Identification of Gene Expression Changes from Colitis to CRC in the Mouse CAC Model
Cited by: 14
Author(s): Xin Li, Yuyan Gao, Ming Yang, Qi Zhao, Guangyu Wang, Yan Yang, Yue Yang, Hui Liu, Yanqiao Zhang
Software Mentions: 3
Published: over 12 years ago

10.1186/s12711-021-00633-2

Variants at the ASIP locus contribute to coat color darkening in Nellore cattle
Cited by: 21
Author(s): Beatriz Batista Trigo, Adam Taiti Harth Utsunomiya, Alvaro A. A. D. Fortunato, Marco Milanesi, Rafaela Beatriz Pintor Torrecilha, Harrison J. Lamb, Loan Nguyen, Elizabeth M. Ross, Ben J. Hayes, Romulo Cláudio Morozini Padula, Thayla Souza Sussai, Ludmilla Balbo Zavarez, Rafael Silva Cipriano, Maria Margareth Theodoro Caminhas, Flávia L. Lopes, Cassiano Pelle, Tosso Leeb, Danika L. Bannasch, Derek M. Bickhart, Timothy P. L. Smith, Tad S. Sonstegard, José Fernando Garcia, Yuri Tani Utsunomiya
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0182533

A survey of the mycobiota associated with larvae of the black soldier fly (Hermetia illucens) reared for feed production
Cited by: 73
Author(s): Ilaria Varotto-Boccazzi, M. Ottoboni, Elena Martín, Francesco Comandatore, L. Vallone, Thomas Spranghers, Mia Eeckhout, Valeria Mereghetti, L. Pinotti, Sara Epis
Software Mentions: 3
Published: about 9 years ago

10.3390/genes11060696

Comparative Pathway Integrator: A Framework of Meta-Analytic Integration of Multiple Transcriptomic Studies for Consensual and Differential Pathway Analysis
Cited by: 7
Author(s): Xiangrui Zeng, Wei Zong, Chien‐Wei Lin, Zhou Fang, Tianzhou Ma, David A. Lewis, John F. Enwright, George C. Tseng
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0084573

A DNA Methylation Network Interaction Measure, and Detection of Network Oncomarkers
Cited by: 28
Author(s): Thomas E. Bartlett, Sofia C. Olhede, Alexey Zaikin
Software Mentions: 3
Published: almost 13 years ago

10.3390/genes11070817

SOMmelier—Intuitive Visualization of the Topology of Grapevine Genome Landscapes Using Artificial Neural Networks
Cited by: 5
Author(s): Maria Nikoghosyan, Maria Schmidt, K. Margaryan, Henry Loeffler‐Wirth, Arsen Arakelyan, Hans Binder
Software Mentions: 3
Published: over 6 years ago

10.3390/genes12020257

Differential Expression of a Panel of Ten CNTN1-Associated Genes during Prostate Cancer Progression and the Predictive Properties of the Panel towards Prostate Cancer Relapse
Cited by: 2
Author(s): Yan Gu, Mathilda Jing Chow, Anil Kapoor, Xiaozeng Lin, Wenjuan Mei, Damu Tang
Software Mentions: 3
Published: over 5 years ago

10.1186/s13613-018-0374-x

Duration of acute kidney injury in critically ill patients
Cited by: 41
Author(s): Christine K. Federspiel, Theis Skovsgaard Itenov, Kala M. Mehta, Raymond K. Hsu, Morten H. Bestle, Kathleen D. Liu
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0166586

Cohesion and Coalition Formation in the European Parliament: Roll-Call Votes and Twitter Activities
Cited by: 32
Author(s): Darko Cherepnalkoski, Andreas Karpf, Igor Mozetič, Miha Grčar
Software Mentions: 3
Published: almost 10 years ago

10.1002/ece3.3043

Effects of Alpine land‐use changes: Soil macrofauna community revisited
Cited by: 20
Author(s): Michael Steinwandter, Birgit C. Schlick‐Steiner, Gilg Seeber, Florian M. Steiner, Julia Seeber
Software Mentions: 3
Published: over 9 years ago

10.3390/genes11010046

Population Genomics of an Anadromous Hilsa Shad Tenualosa ilisha Species across Its Diverse Migratory Habitats: Discrimination by Fine-Scale Local Adaptation
Cited by: 14
Author(s): Md. Asaduzzaman, Yoji Igarashi, Abdul Wahab, Md. Nahiduzzaman, Jalilur Rahman, Michael J. Phillips, Songqian Huang, Shuichi Asakawa, Moshiur Rahman, Li Lian Wong
Software Mentions: 3
Published: almost 7 years ago

10.1002/pmic.201700388

Integrative Analysis of Proteome and Ubiquitylome Reveals Unique Features of Lysosomal and Endocytic Pathways in Gefitinib‐Resistant Non‐Small Cell Lung Cancer Cells
Cited by: 19
Author(s): Wang Li, Heyong Wang, Yan Yang, Tian Zhao, Zhixiong Zhang, Ye Tian, Zhaomie Shi, Xiaojun Peng, Fēi Li, Yonghong Feng, Lei Zhang, Gening Jiang, Fan Zhang
Software Mentions: 3
Published: over 8 years ago

10.1038/s41598-020-72735-8

Genome-wide association mapping for wheat blast resistance in CIMMYT’s international screening nurseries evaluated in Bolivia and Bangladesh
Cited by: 26
Author(s): Philomin Juliana, Xinyao He, Muhammad Rezaul Kabir, Krishna Kanta Roy, Md. Babul Anwar, Félix Marza, Jesse Poland, Sandesh Shrestha, Ravi P. Singh, Pawan Kumar Singh
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0218407

Genome-wide SNP analysis of Japanese Thoroughbred racehorses
Cited by: 14
Author(s): Jeffrey A. Fawcett, Fumio Sato, Takahiro Sakamoto, Watal M. Iwasaki, Teruaki Tozaki, Hideki Innan
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0094147

S-Score: A Scoring System for the Identification and Prioritization of Predicted Cancer Genes
Cited by: 9
Author(s): Jorge Estefano Santana de Souza, André Fonseca, Renan Valieris, Dirce Maria Carraro, Jean Y. J. Wang, Richard D. Kolodner, Sandro J. de Souza
Software Mentions: 2
Published: over 12 years ago

10.1186/s12864-018-5245-1

Genome rearrangements and selection in multi-chromosome bacteria Burkholderia spp.
Cited by: 18
Author(s): Olga O Bochkareva, Elena V. Moroz, Iakov I. Davydov, Mikhail S. Gelfand
Software Mentions: 2
Published: almost 8 years ago

10.1111/ahg.12099

Effectiveness of Shrinkage and Variable Selection Methods for the Prediction of Complex Human Traits using Data from Distantly Related Individuals
Cited by: 14
Author(s): Swetlana Berger, Paulino Pérez‐Rodríguez, Yogasudha Veturi, Henner Simianer, Gustavo de los Campos
Software Mentions: 2
Published: almost 12 years ago

10.1534/g3.117.300406

A Bayesian Genomic Regression Model with Skew Normal Random Errors
Cited by: 6
Author(s): Paulino Pérez‐Rodríguez, Rocío Acosta-Pech, Sergio Pérez-Elizalde, Ciro Velasco Cruz, Javier Suárez Espinosa, J. Crossa
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0037906

The Yin and Yang of Yeast Transcription: Elements of a Global Feedback System between Metabolism and Chromatin
Cited by: 46
Author(s): Rainer Machné, Douglas B. Murray
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0161828

Protein Co-Expression Analysis as a Strategy to Complement a Standard Quantitative Proteomics Approach: Case of a Glioblastoma Multiforme Study
Cited by: 10
Author(s): Evangelos Kanonidis, Marcia Roy, Ruth F. Deighton, Thierry Le Bihan
Software Mentions: 2
Published: about 10 years ago

10.1042/BSR20192048

Expression profiles of genes associated with inflammatory responses and oxidative stress in lung after heat stroke
Cited by: 11
Author(s): Zhaoyu Liu, Jitao Chen, La Hu, Ming Li, Min Liang, Jianan Chen, Hai Lin, Zicheng Zeng, Weilun Yin, Zhijie Dong, Jian Weng, Wenqian Yao, Yi Gao
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0165828

Cluster Individuals Based on Phenotype and Determine the Risk for Atrial Fibrillation in the PREVEND and Framingham Heart Study Populations
Cited by: 3
Author(s): Michiel Rienstra, Bastiaan Geelhoed, Xiaoyan Yin, Joylene E. Siland, Rob A. Vermond, Bart A. Mulder, Pim van der Harst, Hans L. Hillege, Emelia J. Benjamin, Isabelle C. Van Gelder
Software Mentions: 2
Published: almost 10 years ago

10.18632/aging.104015

Single-cell expression profiles of ACE2 and TMPRSS2 reveals potential vertical transmission and fetus infection of SARS-CoV-2
Cited by: 23
Author(s): Mengdie Lü, Li Qiu, Guangshuai Jia, Rong Guo, Qibin Leng
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0185310

A draft genome sequence of the rose black spot fungus Diplocarpon rosae reveals a high degree of genome duplication
Cited by: 7
Author(s): Enzo Neu, Jonathan Featherston, D. J. G. Rees, Thomas Debener
Software Mentions: 2
Published: about 9 years ago

10.18632/aging.101560

Heat-induced longevity in budding yeast requires respiratory metabolism and glutathione recycling
Cited by: 10
Author(s): Marina Musa, Matea Perić, Peter Bou Dib, Sandra Sobočanec, Ana Šarić, Anita Lovrić, Marina Rudan, Andrea R. Nikolić, Ira Milošević, Kristian Vlahoviček, Nuno Raimundo, Anita Kriško
Software Mentions: 2
Published: about 8 years ago

10.3389/fvets.2021.637622

MicroRNA Expression Changes and Integrated Pathways Associated With Poor Outcome in Canine Osteosarcoma
Cited by: 3
Author(s): Deanna D. Dailey, Ann Hess, Gerrit J. Bouma, Dawn L. Duval
Software Mentions: 2
Published: over 5 years ago

10.1186/s12983-019-0313-1

Nest initiation and flooding in response to season and semi-lunar spring tides in a ground-nesting shorebird
Cited by: 10
Author(s): Silvia Plaschke, Martin Bulla, Medardo Cruz‐López, Salvador Gómez del Ángel, Clemens Küpper
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0143296

Occurrence of Transgenic Feral Alfalfa (Medicago sativa subsp. sativa L.) in Alfalfa Seed Production Areas in the United States
Cited by: 27
Author(s): Stephanie L. Greene, Sandya R. Kesoju, Ruth C. Martin, Matthew Kramer
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0249749

Sick of news? Television news exposure, collective stressful events and headache related emergency department visits
Cited by: 0
Author(s): Alina Vodonos, Victor Novack, Israel Waismel-Manor, Yacov Ezra, Dafne Guetta, Gal Ifergane
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-019-6296-7

Population history and genetic adaptation of the Fulani nomads: inferences from genome-wide data and the lactase persistence trait
Cited by: 33
Author(s): Mário Vicente, Edita Priehodová, Issa Diallo, Eliška Podgorná, Estella S. Poloni, Viktor Černý, Carina M. Schlebusch
Software Mentions: 2
Published: almost 7 years ago

10.3389/fpsyg.2020.02260

Estimating CDMs Using the Slice-Within-Gibbs Sampler
Cited by: 2
Author(s): Xu Xin, Jimmy de la Torre, Jiwei Zhang, Jinxin Guo, Ning Shi
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2012.00241

Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis)
Cited by: 10
Author(s): Ruth Grene, Curtis Klumas, Haktan Suren, Kuan Yang, Eva Collakova, Elijah Myers, Lenwood S. Heath, Jason A. Holliday
Software Mentions: 2
Published: almost 15 years ago

10.3389/fpsyg.2018.00333

Association Between Fear and Beauty Evaluation of Snakes: Cross-Cultural Findings
Cited by: 34
Author(s): Eva Landová, Natavan Bakhshaliyeva, Markéta Janovcová, Šárka Peléšková, Mesma Suleymanova, Jakub Polák, Akif Guliev, Daniel Frynta
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0130699

Species-Specific Chromosome Engineering Greatly Improves Fully Human Polyclonal Antibody Production Profile in Cattle
Cited by: 34
Author(s): Haruo Matsushita, Akiko Sano, Hua Wu, Zhongde Wang, Jin-an Jiao, Poothappillai Kasinathan, Eddie Sullivan, Yoshimi Kuroiwa
Software Mentions: 2
Published: over 11 years ago

10.1093/aob/mcw108

Breeding system diversification and evolution in AmericanPoasupersect.Homalopoa(Poaceae: Poeae: Poinae)
Cited by: 23
Author(s): Liliana M. Giussani, Lynn J. Gillespie, M. Amalia Scataglini, María A Negritto, Ana M. Antón, Robert J. Soreng
Software Mentions: 2
Published: over 10 years ago

10.3389/fpsyg.2019.02350

Investigating How Parental Instructions and Protective Responses Mediate the Relationship Between Parental Psychological Flexibility and Pain-Related Behavior in Adolescents With Chronic Pain: A Daily Diary Study
Cited by: 8
Author(s): Melanie Beeckman, Laura E. Simons, Sean Hughes, Tom Loeys, Liesbet Goubert
Software Mentions: 2
Published: about 7 years ago

10.1534/g3.113.005769

Genome-Wide Patterns of Codon Bias Are Shaped by Natural Selection in the Purple Sea Urchin, Strongylocentrotus purpuratus
Cited by: 24
Author(s): Kord M. Kober, Grant H. Pogson
Software Mentions: 2
Published: over 13 years ago

10.3389/fpls.2013.00456

Transcriptome analysis of poplar rust telia reveals overwintering adaptation and tightly coordinated karyogamy and meiosis processes
Cited by: 27
Author(s): Stéphane Hacquard, Christine Delaruelle, Pascal Frey, Émilie Tisserant, Annegret Kohler, Sébastien Duplessis
Software Mentions: 2
Published: almost 14 years ago

10.3389/fpls.2020.00421

Early Evidence of Shifts in Alpine Summit Vegetation: A Case Study From Kashmir Himalaya
Cited by: 47
Author(s): Maroof Hamid, Anzar A. Khuroo, Akhtar H. Malik, Rameez Ahmad, Chandra Prakash Singh, Jiří Doležal, Shiekh Marifatul Haq
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2021.665530

Metabolome-Based Genome-Wide Association Study Provides Genetic Insights Into the Natural Variation of Foxtail Millet
Cited by: 14
Author(s): Wei Wei, Shuangdong Li, Yixiang Wang, Bin Wang, Guangyu Fan, Qisen Zeng, Fang Zhao, Chunhai Xu, Xiaolei Zhang, Tang Tang, Xiaolei Feng, Jian Shi, Gaolei Shi, Weiqin Zhang, Guoliang Song, Huan Li, Rui Wang, Yali Zhang, Xinru Li, Dequan Wang, Wenying Zhang, Jingjing Pei, Xiaoming Wang, Zhihai Zhao
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0040918

A Model-Based Method for Gene Dependency Measurement
Cited by: 4
Author(s): Qing Zhang, Xiaodan Fan, Yejun Wang, Ming-an Sun, Samuel S. M. Sun, Dianjing Guo
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0030880

Gene-Expression Signature Predicts Postoperative Recurrence in Stage I Non-Small Cell Lung Cancer Patients
Cited by: 43
Author(s): Yan Lü, Liang Wang, Pengyuan Liu, Ping Yang, Ming You
Software Mentions: 2
Published: almost 15 years ago

10.1093/bioinformatics/btaa987

Ultra-fast scalable estimation of single-cell differentiation potency from scRNA-Seq data
Cited by: 9
Author(s): Andrew E. Teschendorff, Alok Kumar Maity, Hao Xue, Weiyan Chen, Matthias Lechner
Software Mentions: 2
Published: almost 6 years ago

10.3389/fphys.2020.567675

A Novel Fibroblast Reporter Cell Line for in vitro Studies of Pulmonary Fibrosis
Cited by: 6
Author(s): Júlia Németh, Annika Schundner, Karsten Quast, Veronika Eva Winkelmann, Manfred Frick
Software Mentions: 2
Published: about 6 years ago

10.3389/fpls.2015.00594

New insights into plant glycoside hydrolase family 32 in Agave species
Cited by: 18
Author(s): Emmanuel Ávila de Dios, Alan Daniel Gomez Vargas, Maura L. Damián Santos, June Simpson
Software Mentions: 2
Published: about 11 years ago

10.3389/fonc.2020.01232

Gene Co-expression Is Distance-Dependent in Breast Cancer
Cited by: 20
Author(s): Diana García-Cortés, Guillermo de Anda-Jáuregui, Cristóbal Fresno, Enrique Hernández‐Lemus, Jesús Espinal-Enríquez
Software Mentions: 2
Published: over 6 years ago

10.1186/s12862-015-0543-6

Variation in NAT2 acetylation phenotypes is associated with differences in food-producing subsistence modes and ecoregions in Africa
Cited by: 30
Author(s): Eliška Podgorná, Issa Diallo, Christelle Vangenot, Alicia Sanchez‐Mazas, Audrey Sabbagh, Viktor Černý, Estella S. Poloni
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0134124

Beech Fructification and Bank Vole Population Dynamics - Combined Analyses of Promoters of Human Puumala Virus Infections in Germany
Cited by: 44
Author(s): Daniela Reil, Christian Imholt, Jana A. Eccard, Jens Jacob
Software Mentions: 2
Published: over 11 years ago

10.3897/BDJ.8.e50500

Host records and geographical distribution of Corynosoma magdaleni, C. semerme and C. strumosum (Acanthocephala: Polymorphidae)
Cited by: 6
Author(s): Sonja Leidenberger, Sven Boström, Matthew T. Wayland
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0074265

Shifts in the Microbial Community Composition of Gulf Coast Beaches Following Beach Oiling
Cited by: 65
Author(s): Ryan J. Newton, Susan M. Huse, Hilary G. Morrison, Colin S. Peake, Mitchell L. Sogin, Sandra L. McLellan
Software Mentions: 2
Published: about 13 years ago

10.3390/ani10122332

Using Dairy Value Chains to Identify Production Constraints and Biosecurity Risks
Cited by: 5
Author(s): Jaswinder Singh, Balbir Singh, Harish Kumar Tiwari, Harmandeep Singh Josan, Nidhi Jaswal, Manmeet Kaur, Polychronis Kostoulas, Mehar S. Khatkar, Rabinder Singh Aulakh, Jatinder Paul Singh Gill, Navneet K. Dhand
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2021.621353

Multiple Omics Integration Reveals Key Circular RNAs in Hepatocellular Carcinoma
Cited by: 4
Author(s): Zili Huang, Xiuyan Huang, Jin Huang, Xinyu Huang, Yingbin Xu, Jian Zhou, Zhao–You Tang
Software Mentions: 2
Published: over 5 years ago

10.1186/s12862-017-1069-x

Phylogenetic relationships of cone snails endemic to Cabo Verde based on mitochondrial genomes
Cited by: 24
Author(s): Samuel Abalde, Manuel Jiménez‐Tenorio, Carlos M.L. Afonso, Juan E. Uribe, Ana María Echeverry, Rafael Zardoya
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13040-014-0032-2

Integrative genomics and transcriptomics analysis of human embryonic and induced pluripotent stem cells
Cited by: 2
Author(s): Kirsti Laurila, Reija Autio, Lingjia Kong, Elisa Närvä, Samer M.I. Hussein, Timo Otonkoski, Riitta Lahesmaa, Harri Lähdesmäki
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pntd.0005872

Spatial distribution and risk factors of Schistosoma haematobium and hookworm infections among schoolchildren in Kwale, Kenya
Cited by: 24
Author(s): Evans Asena Chadeka, Sachiyo Nagi, Toshihiko Sunahara, Ngetich Benard Cheruiyot, Felix Bahati, Yuriko Ozeki, Matsuhisa Inoue, Mayuko Osada‐Oka, Masaru Okabe, Yukio Hirayama, Mwatasa Changoma, Keishi Adachi, Faith Mwende, Mihoko Kikuchi, Ryô Nakamura, Yombo Dan Justin Kalenda, Satoshi Kaneko, Kenji Hirayama, Muneaki Shimada, Yuki Ichinose, Sammy M. Njenga, Sohkichi Matsumoto, Shinjiro Hamano
Software Mentions: 2
Published: about 9 years ago

10.1007/s10519-015-9723-9

Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset
Cited by: 24
Author(s): Camelia C. Minică, Conor V. Dolan, Jouke‐Jan Hottenga, René Pool, Iryna O. Fedko, Hamdi Mbarek, Charlotte Huppertz, Meike Bartels, Dorret I. Boomsma, Jacqueline M. Vink
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pntd.0000799

Targeting Trachoma Control through Risk Mapping: The Example of Southern Sudan
Cited by: 35
Author(s): Archie C. A. Clements, Lucia W. Kur, Gideon Gatpan, Jeremiah Ngondi, Paul M. Emerson, Mounir Lado, Anthony Sabasio, Jan Kolaczinski
Software Mentions: 2
Published: about 16 years ago

10.1186/1471-2105-13-112

Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs
Cited by: 21
Author(s): Suleiman A. Khan, Ali Faisal, John Patrick Mpindi, Juuso Parkkinen, Tuomo Kalliokoski, Antti Poso, Olli Kallioniemi, Krister Wennerberg, Samuel Kaski
Software Mentions: 2
Published: over 14 years ago

10.3390/genes6030577

Alu Elements as Novel Regulators of Gene Expression in Type 1 Diabetes Susceptibility Genes?
Cited by: 7
Author(s): Simranjeet Kaur, Flemming Pociot
Software Mentions: 2
Published: over 11 years ago

10.1186/s12918-017-0473-6

Informed walks: whispering hints to gene hunters inside networks’ jungle
Cited by: 3
Author(s): Marilena M. Bourdakou, George M. Spyrou
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2148-7-111

Gene duplication, modularity and adaptation in the evolution of the aflatoxin gene cluster
Cited by: 87
Author(s): Ignazio Carbone, Jorge Humberto Ramírez-Prado, Judy L. Jakobek, Bruce W. Horn
Software Mentions: 2
Published: almost 20 years ago

10.3389/fneur.2017.00064

Classification of Different Degrees of Disability Following Intracerebral Hemorrhage: A Decision Tree Analysis from VISTA-ICH Collaboration
Cited by: 6
Author(s): Thanh G. Phan, Jian Chen, Richard Beare, Henry Ma, Benjamin Clissold, John Ly, Velandai Srikanth
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pmed.1002541

Multimorbidity in patients with heart failure from 11 Asian regions: A prospective cohort study using the ASIAN-HF registry
Cited by: 89
Author(s): Jasper Tromp, Wan Ting Tay, Wouter Ouwerkerk, Tiew‐Hwa Katherine Teng, Jonathan Yap, Michael R. MacDonald, Kirsten Leineweber, John J.V. McMurray, Michael R. Zile, Inder S. Anand, A. Mark Richards, Carolyn S.P. Lam
Software Mentions: 2
Published: over 8 years ago

10.3389/fnins.2017.00622

Visual Sensory Signals Dominate Tactile Cues during Docked Feeding in Hummingbirds
Cited by: 9
Author(s): Benjamin Goller, Paolo S. Segre, Kevin M. Middleton, Michael H. Dickinson, Douglas L. Altshuler
Software Mentions: 2
Published: almost 9 years ago

10.3389/fnins.2016.00576

Two Time Point MS Lesion Segmentation in Brain MRI: An Expectation-Maximization Framework
Cited by: 33
Author(s): Saurabh Jain, Annemie Ribbens, Diana M. Sima, Melissa Cambron, Jacques De Keyser, Chenyu Wang, Michael Barnett, Sabine Van Huffel, Frederik Maes, Dirk Smeets
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2105-12-219

RAG: An update to the RNA-As-Graphs resource
Cited by: 46
Author(s): Joseph A. Izzo, Namhee Kim, Shereef Elmetwaly, Tamar Schlick
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pgen.1007130

Gene duplicates cause hybrid lethality between sympatric species of Mimulus
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Author(s): Matthew P. Zuellig, Andrea L. Sweigart
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pgen.1003554

Trans-Ancestral Studies Fine Map the SLE-Susceptibility Locus TNFSF4
Cited by: 50
Author(s): Harinder Manku, Carl D. Langefeld, Sandra G. Guerra, Talat H. Malik, Marta E. Alarcón‐Riquelme, Juan Manuel Anaya, Sang Cheol Bae, Susan A. Boackle, Elizabeth E. Brown, Lindsey A. Criswell, Barry I. Freedman, Patrick M. Gaffney, Peter Gregersen, Joel M. Guthridge, Sang Hoon Han, John B. Harley, Chaim O. Jacob, Judith A. James, Diane L. Kamen, Kenneth M. Kaufman, Jennifer A. Kelly, Javier Martín, Joan T. Merrill, Kathy L. Moser, Timothy B. Niewold, So Yeon Park, Bernardo A. Pons-Estel, Amr H. Sawalha, R. Hal Scofield, Nan Shen, Anne M. Stevens, Celi Sun, Gary S. Gilkeson, Jeff Edberg, Robert P. Kimberly, Swapan K. Nath, Betty P. Tsao, Tim J. Vyse
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pgen.1005626

The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis
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Author(s): Leszek P. Pryszcz, Tibor Németh, Ester Saus, Ewa Księżopolska, Eva Hegedűsová, Jozef Nosek, Kenneth H. Wolfe, Attila Gácser, Toni Gabaldón
Software Mentions: 2
Published: almost 11 years ago

10.1186/s13104-021-05750-1

DArT-based evaluation of soybean germplasm from Polish Gene Bank
Cited by: 8
Author(s): E. Czembor, Jerzy H. Czembor, Radosław Suchecki, Nathan S. Watson-Haigh
Software Mentions: 2
Published: about 5 years ago

10.3389/fmolb.2021.727481

Characterization of METTL7B to Evaluate TME and Predict Prognosis by Integrative Analysis of Multi-Omics Data in Glioma
Cited by: 8
Author(s): Xiaochuan Chen, Chao Li, Ying Liu, Shihong Wu, Wei Liu, Ting Lin, Miaomiao Li, Youliang Weng, Wanzun Lin, Sufang Qiu
Software Mentions: 2
Published: about 5 years ago

Projects: pypi: package

Science Score: 65/100

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Papers Mentioning package 1,300