pypi: package | Projects | Ecosyste.ms: Papers

10.1371/journal.pgen.1008840

The kinase Isr1 negatively regulates hexosamine biosynthesis in S. cerevisiae
Cited by: 3
Author(s): Emma B Alme, Erica Stevenson, Nevan J. Krogan, Danielle L. Swaney, David P. Toczyski
Software Mentions: 3
Published: about 6 years ago

10.1002/ece3.6545

Lousy grouse: Comparing evolutionary patterns in Alaska galliform lice to understand host evolution and host–parasite interactions
Cited by: 9
Author(s): Andrew D. Sweet, R. E. Wilson, Sarah A. Sonsthagen, Kevin P. Johnson
Software Mentions: 3
Published: about 6 years ago

10.7554/eLife.02407

Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons
Cited by: 464
Author(s): Iris Jonkers, Ho Young Kwak, John T. Lis
Software Mentions: 3
Published: over 12 years ago

10.1038/s41597-020-00702-z

LCVP, The Leipzig catalogue of vascular plants, a new taxonomic reference list for all known vascular plants
Cited by: 47
Author(s): Martin Freiberg, Marten Winter, Alessandro Gentile, Alexander Zizka, Alexandra N. Muellner‐Riehl, Alexandra Weigelt, Christian Wirth
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1002565

Tcf7 Is an Important Regulator of the Switch of Self-Renewal and Differentiation in a Multipotential Hematopoietic Cell Line
Cited by: 92
Author(s): Jia Qian Wu, Montrell Seay, Vincent P. Schulz, Manoj Hariharan, David Tuck, Lian Jin, Jie Du, Minyi Shi, Zhijia Ye, Mark Gerstein, M Snyder, Sherman M. Weissman
Software Mentions: 3
Published: over 14 years ago

10.1186/s13104-021-05729-y

XPolaris: an R-package to retrieve United States soil data at 30-meter resolution
Cited by: 3
Author(s): Luiz H. Moro Rosso, André Fróes de Borja Reis, Adrián A. Correndo, Ignacio A. Ciampitti
Software Mentions: 3
Published: almost 5 years ago

10.1002/prot.25094

FF12MC: A revised AMBER forcefield and new protein simulation protocol
Cited by: 34
Author(s): Yuan Ping Pang
Software Mentions: 3
Published: about 10 years ago

10.1155/2020/5314187

To Probe Full and Partial Activation of Human Peroxisome Proliferator-Activated Receptors by Pan-Agonist Chiglitazar Using Molecular Dynamics Simulations
Cited by: 6
Author(s): Holli-Joi Sullivan, Xiaoyan Wang, Shaina Nogle, Susan Liao, Chun Wu
Software Mentions: 3
Published: over 6 years ago

10.1002/pmic.201700388

Integrative Analysis of Proteome and Ubiquitylome Reveals Unique Features of Lysosomal and Endocytic Pathways in Gefitinib‐Resistant Non‐Small Cell Lung Cancer Cells
Cited by: 19
Author(s): Wang Li, Heyong Wang, Yan Yang, Tian Zhao, Zhixiong Zhang, Ye Tian, Zhaomie Shi, Xiaojun Peng, Fēi Li, Yonghong Feng, Lei Zhang, Gening Jiang, Fan Zhang
Software Mentions: 3
Published: about 8 years ago

10.1038/srep24180

Population Dynamics of Bulking and Foaming Bacteria in a Full-scale Wastewater Treatment Plant over Five Years
Cited by: 21
Author(s): Xiaotao Jiang, Feng Guo, Tong Zhang
Software Mentions: 3
Published: over 10 years ago

10.1111/joa.13437

Cortical and trabecular bone structure of the hominoid capitate
Cited by: 12
Author(s): Emma E. Bird, Tracy L. Kivell, Matthew M. Skinner
Software Mentions: 3
Published: over 5 years ago

10.1186/1472-6785-12-19

Contrasting habitat associations of imperilled endemic stream fishes from a global biodiversity hot spot
Cited by: 18
Author(s): Albert Chakona, Ernst R. Swartz
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pcbi.1000300

Alu Exonization Events Reveal Features Required for Precise Recognition of Exons by the Splicing Machinery
Cited by: 55
Author(s): Schraga Schwartz, Nurit Gal-Mark, Nir Kfir, Oren Ram, Eddo Kim, Gil Ast
Software Mentions: 3
Published: over 17 years ago

10.1016/j.cub.2020.10.025

The Proteomic Landscape of Centromeric Chromatin Reveals an Essential Role for the Ctf19CCAN Complex in Meiotic Kinetochore Assembly
Cited by: 11
Author(s): Weronika E. Borek, Nadine Vincenten, Eris Duro, Vasso Makrantoni, Christos Spanos, Krishna K. Sarangapani, Flávia de Lima Alves, David A. Kelly, Charles L. Asbury, Juri Rappsilber, Adèle L. Marston
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-016-0975-z

CoeViz: a web-based tool for coevolution analysis of protein residues
Cited by: 39
Author(s): Frazier N. Baker, Aleksey Porollo
Software Mentions: 3
Published: over 10 years ago

10.1186/s13148-019-0619-z

Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors
Cited by: 16
Author(s): Songlin Li, Yuan Yuan, He Xiao, Jiajia Dai, Yunfei Ye, Qin Zhang, Zhimin Zhang, Yuhan Jiang, Jia Luo, Jing Hu, Chuan Chen, Ge Wang
Software Mentions: 3
Published: over 7 years ago

10.1038/s42003-018-0176-6

Incomplete lineage sorting rather than hybridization explains the inconsistent phylogeny of the wisent
Cited by: 76
Author(s): Kun Wang, Johannes A. Lenstra, Liang Liu, Quanjun Hu, Tao Ma, Qiang Qiu, Jianquan Liu
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2229-13-122

P-TRAP: a Panicle Trait Phenotyping tool
Cited by: 66
Author(s): Faroq Al-Tam, Hélène Adam, António dos Anjos, Mathias Lorieux, Pierre Larmande, Alain Ghesquière, Stéfan Jouannic, Hamid Reza Shahbazkia
Software Mentions: 3
Published: almost 13 years ago

10.3390/ph14010041

Modulation of the Immune Response by Deferasirox in Myelodysplastic Syndrome Patients
Cited by: 4
Author(s): Hana Votavová, Zuzana Urbanová, David Kundrát, Michaela Dostálová Merkerová, Martin Vostrý, Monika Hruba, Jaroslav Čermák, Monika Beličková
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.7366

Asexual reproduction of a few genotypes favored the invasion of the cereal aphidRhopalosiphum padiin Chile
Cited by: 4
Author(s): María E Rubio-Meléndez, Joceline Barrios-Sanmartín, Felipe E. Pina-Castro, Christian C. Figueroa, C. Ramı́rez
Software Mentions: 3
Published: about 7 years ago

10.1093/gbe/evw077

“Every Gene Is Everywhere but the Environment Selects”: Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis
Cited by: 80
Author(s): Marco Fondi, Antti Karkman, Manu Tamminen, Emanuele Bosi, Marko Virta, Renato Fani, Eric J. Alm, James O. McInerney
Software Mentions: 3
Published: over 10 years ago

10.7717/peerj.6115

The role of Central American barriers in shaping the evolutionary history of the northernmost glassfrog,Hyalinobatrachium fleischmanni(Anura: Centrolenidae)
Cited by: 19
Author(s): Ángela María Mendoza, Wilmar Bolívar-García, Ella Vázquez‐Domínguez, Roberto Ibáñez, Gabriela Parra Olea
Software Mentions: 3
Published: over 7 years ago

10.1186/s13059-019-1923-9

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
Cited by: 52
Author(s): Serena Manara, Francesco Asnicar, Francesco Beghini, Davide Bazzani, Fabio Cumbo, Moreno Zolfo, Eleonora Nigro, Nicolai Karcher, Paolo Manghi, Marisa Isabell Metzger, Edoardo Pasolli, Nicola Segata
Software Mentions: 3
Published: over 6 years ago

10.3389/fgene.2014.00250

Phenome-wide association studies demonstrating pleiotropy of genetic variants within FTO with and without adjustment for body mass index
Cited by: 60
Author(s): Robert M. Cronin, Julie R. Field, Yuki Bradford, Christian M. Shaffer, Robert J. Carroll, Jonathan D. Mosley, Lisa Bastarache, Todd L. Edwards, Scott J. Hebbring, Simon Lin, Lucia A. Hindorff, Paul K. Crane, Sarah A. Pendergrass, Marylyn D. Ritchie, Dana C. Crawford, Jyotishman Pathak, Suzette J. Bielinski, David Carrell, David R. Crosslin, David H. Ledbetter, David J. Carey, Gerard Tromp, Marc S. Williams, Eric B. Larson, Gail P. Jarvik, Peggy L. Peissig, Murray H. Brilliant, Catherine A. McCarty, Christopher G. Chute, Iftikhar J. Kullo, Erwin Böttinger, Rex L. Chisholm, Maureen E. Smith, Dan M. Roden, Joshua C. Denny
Software Mentions: 3
Published: about 12 years ago

10.7717/peerj.8683

Patterns of change in α and β taxonomic and phylogenetic diversity in the secondary succession of semi-natural grasslands in the Northern Apennines
Cited by: 6
Author(s): Lorenzo Lazzaro, Lorenzo Lastrucci, Daniele Viciani, Renato Benesperi, Vincenzo Gonnelli, Andrea Coppi
Software Mentions: 3
Published: over 6 years ago

10.3390/cells9010165

In Silico Analysis of the Age-Dependent Evolution of the Transcriptome of Mouse Skin Stem Cells
Cited by: 4
Author(s): L. Francisco Lorenzo‐Martín, Xosé R. Bustelo
Software Mentions: 3
Published: over 6 years ago

10.1002/jcp.29046

Identification of methylation‐driven genes related to prognosis in clear‐cell renal cell carcinoma
Cited by: 11
Author(s): Jia Wang, Qiujing Zhang, Qingqing Zhu, Chengxiang Li, Xueli Nan, Fuxia Wang, Lihua Fang, Jie Liu, Chao Xie, Shuai Fu, Bao-Liang Song
Software Mentions: 3
Published: about 7 years ago

10.1186/gb-2014-15-5-r71

A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions
Cited by: 28
Author(s): Alayne Brunner, Jun Li, Xiangqian Guo, Robert T. Sweeney, Sushama Varma, Shirley Zhu, Rui Li, Robert Tibshirani, Robert B. West
Software Mentions: 3
Published: over 12 years ago

10.1186/s13059-014-0412-4

Non-targeted transcription factors motifs are a systemic component of ChIP-seq datasets
Cited by: 55
Author(s): Rebecca Worsley Hunt, Wyeth W. Wasserman
Software Mentions: 3
Published: about 12 years ago

10.1186/s13059-014-0567-z

The draft genome of Primula veris yields insights into the molecular basis of heterostyly
Cited by: 90
Author(s): Michael Nowak, Giancarlo Russo, Ralph Schlapbach, Cuong Nguyen Huu, Michael Lenhard, Elena Conti
Software Mentions: 3
Published: over 11 years ago

10.3758/s13414-015-0860-2

The long and the short of priming in visual search
Cited by: 24
Author(s): Wouter Kruijne, Martijn Meeter
Software Mentions: 3
Published: over 11 years ago

10.1186/1756-3305-6-359

Bayesian geostatistical modelling of soil-transmitted helminth survey data in the People’s Republic of China
Cited by: 49
Author(s): Ying-Si Lai, Xiao‐Nong Zhou, Jürg Utzinger, Penelope Vounatsou
Software Mentions: 3
Published: over 12 years ago

10.1186/s12711-021-00633-2

Variants at the ASIP locus contribute to coat color darkening in Nellore cattle
Cited by: 21
Author(s): Beatriz Batista Trigo, Adam Taiti Harth Utsunomiya, Alvaro A. A. D. Fortunato, Marco Milanesi, Rafaela Beatriz Pintor Torrecilha, Harrison J. Lamb, Loan Nguyen, Elizabeth M. Ross, Ben J. Hayes, Romulo Cláudio Morozini Padula, Thayla Souza Sussai, Ludmilla Balbo Zavarez, Rafael Silva Cipriano, Maria Margareth Theodoro Caminhas, Flávia L. Lopes, Cassiano Pelle, Tosso Leeb, Danika L. Bannasch, Derek M. Bickhart, Timothy P. L. Smith, Tad S. Sonstegard, José Fernando Garcia, Yuri Tani Utsunomiya
Software Mentions: 3
Published: over 5 years ago

10.1186/s13059-014-0414-2

Discovery of novel transcripts and gametophytic functions via RNA-seq analysis of maize gametophytic transcriptomes
Cited by: 67
Author(s): Antony M. Chettoor, Scott A. Givan, Rex A. Cole, Clayton T Coker, Erica Unger-Wallace, Zuzana Vejlupkova, Erik Vollbrecht, John E. Fowler, Evans Mulenga
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0141830

Discovery of Genome-Wide Microsatellite Markers in Scombridae: A Pilot Study on Albacore Tuna
Cited by: 5
Author(s): Natacha Nikolic, Stéphanie Duthoy, Antoine Destombes, Nathalie Bodin, Wendy West, Alexis Puech, Jérôme Bourjea
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12263-020-00680-2

DNA methylation during human adipogenesis and the impact of fructose
Cited by: 7
Author(s): Giulia Tini, Vijayalakshmi Varma, Rosario Lombardo, Greg T. Nolen, Grégory Lefebvre, Patrick Descombes, Sylviane Métairon, Corrado Priami, Jim Kaput, Marie Pier Scott-Boyer
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0245685

Brain organoid formation on decellularized porcine brain ECM hydrogels
Cited by: 44
Author(s): Robin Simsa, Theresa S.P. Rothenbücher, Hakan Gürbüz, Nidal Ghosheh, Jenny Emnéus, Lachmi Jenndahl, David L. Kaplan, Niklas Bergh, Alberto Martínez Serrano, Per Fogelstrand
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0008320

Applied Climate-Change Analysis: The Climate Wizard Tool
Cited by: 158
Author(s): Evan H. Girvetz, Chris Zganȷar, George T. Raber, Edwin P. Maurer, Peter Kareiva, Joshua J. Lawler
Software Mentions: 3
Published: over 16 years ago

10.3390/v10040192

Full Genome Sequencing Reveals New Southern African Territories Genotypes Bringing Us Closer to Understanding True Variability of Foot-and-Mouth Disease Virus in Africa
Cited by: 22
Author(s): Lidia Lasecka-Dykes, Caroline F. Wright, Antonello Di Nardo, Greg Logan, Valérie Mioulet, Terry Jackson, Tobias J. Tuthill, Nick J. Knowles, Donald P. King
Software Mentions: 3
Published: over 8 years ago

10.3390/genes12020257

Differential Expression of a Panel of Ten CNTN1-Associated Genes during Prostate Cancer Progression and the Predictive Properties of the Panel towards Prostate Cancer Relapse
Cited by: 2
Author(s): Yan Gu, Mathilda Jing Chow, Anil Kapoor, Xiaozeng Lin, Wenjuan Mei, Damu Tang
Software Mentions: 3
Published: over 5 years ago

10.3390/genes11070817

SOMmelier—Intuitive Visualization of the Topology of Grapevine Genome Landscapes Using Artificial Neural Networks
Cited by: 5
Author(s): Maria Nikoghosyan, Maria Schmidt, K. Margaryan, Henry Loeffler‐Wirth, Arsen Arakelyan, Hans Binder
Software Mentions: 3
Published: about 6 years ago

10.1186/s12985-019-1253-2

HPV viral load in self-collected vaginal fluid samples as predictor for presence of cervical intraepithelial neoplasia
Cited by: 10
Author(s): Malin Berggrund, Inger Gustavsson, Riina Aarnio, Julia Hedlund-Lindberg, Karin Sanner, Ingrid Wikström, Stefan Enroth, Matts Olovsson, Ulf Gyllensten
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0095347

Identification of Gene Expression Changes from Colitis to CRC in the Mouse CAC Model
Cited by: 14
Author(s): Xin Li, Yuyan Gao, Ming Yang, Qi Zhao, Guangyu Wang, Yan Yang, Yue Yang, Hui Liu, Yanqiao Zhang
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0084573

A DNA Methylation Network Interaction Measure, and Detection of Network Oncomarkers
Cited by: 28
Author(s): Thomas E. Bartlett, Sofia C. Olhede, Alexey Zaikin
Software Mentions: 3
Published: over 12 years ago

10.3390/genes11060696

Comparative Pathway Integrator: A Framework of Meta-Analytic Integration of Multiple Transcriptomic Studies for Consensual and Differential Pathway Analysis
Cited by: 7
Author(s): Xiangrui Zeng, Wei Zong, Chien‐Wei Lin, Zhou Fang, Tianzhou Ma, David A. Lewis, John F. Enwright, George C. Tseng
Software Mentions: 3
Published: about 6 years ago

10.1186/1755-8794-6-28

Whole transcriptome sequencing identifies tumor-specific mutations in human oral squamous cell carcinoma
Cited by: 24
Author(s): Zhilin Qu, Jun Zhang, Hong Jin, Sitong Sheng
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0165823

Transcriptome Profiling of the Phaseolus vulgaris - Colletotrichum lindemuthianum Pathosystem
Cited by: 37
Author(s): Bilal A. Padder, Kelvin Kamfwa, Halima E. Awale
Software Mentions: 3
Published: almost 10 years ago

10.3390/genes11010046

Population Genomics of an Anadromous Hilsa Shad Tenualosa ilisha Species across Its Diverse Migratory Habitats: Discrimination by Fine-Scale Local Adaptation
Cited by: 14
Author(s): Md. Asaduzzaman, Yoji Igarashi, Abdul Wahab, Md. Nahiduzzaman, Jalilur Rahman, Michael J. Phillips, Songqian Huang, Shuichi Asakawa, Moshiur Rahman, Li Lian Wong
Software Mentions: 3
Published: over 6 years ago

10.1002/1878-0261.12903

REST promotes ETS1‐dependent vascular growth in medulloblastoma
Cited by: 9
Author(s): Shavali Shaik, Satoru Maegawa, Amanda R. Haltom, Feng Wang, Xue Xiao, Tara Dobson, Ajay Sharma, Yanwen Yang, Jyothishmathi Swaminathan, Vikas Kundra, Xiao Nan Li, Keri Schadler, Arif Harmanci, Lin Xu, Vidya Gopalakrishnan
Software Mentions: 3
Published: over 5 years ago

10.1534/g3.119.400347

Genome-Wide Association and Gene Co-expression Network Analyses Reveal Complex Genetics of Resistance to Goss’s Wilt of Maize
Cited by: 2
Author(s): Amritpal Singh, Guangyong Li, Alex B. Brohammer, Diego Jarquín, Candice N. Hirsch, James R. Alfano, Aaron J. Lorenz
Software Mentions: 3
Published: almost 7 years ago

10.1534/g3.116.035873

First in Vivo Batrachochytrium dendrobatidis Transcriptomes Reveal Mechanisms of Host Exploitation, Host-Specific Gene Expression, and Expressed Genotype Shifts
Cited by: 21
Author(s): Amy Ellison, Graziella V. DiRenzo, Cait A. McDonald, Karen R. Lips, Kelly R. Zamudio
Software Mentions: 3
Published: over 9 years ago

10.1534/g3.117.300301

Whole-Genome Sequence Accuracy Is Improved by Replication in a Population of Mutagenized Sorghum
Cited by: 26
Author(s): Charles Addo‐Quaye, Mitch Tuinstra, Nicola Carraro, Clifford F. Weil, Brian P. Dilkes
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0113567

Movement Pattern Variability in Stone Knapping: Implications for the Development of Percussive Traditions
Cited by: 25
Author(s): Robert Rein, Tomomi Nonaka, Blandine Bril
Software Mentions: 3
Published: over 11 years ago

10.3389/fpubh.2020.00475

Characteristic of 523 COVID-19 in Henan Province and a Death Prediction Model
Cited by: 24
Author(s): Xiaoxu Ma, Ang Li, Mengfan Jiao, Qingmiao Shi, Xiaocai An, Yonghai Feng, Xing Liu, Hongxia Liang, Jiajun Chen, Huiling Li, Juan Li, Zhigang Ren, Ranran Sun, Guangying Cui, Yongjian Zhou, Ming Huei Cheng, Pengfei Jiao, Yu Wang, Jiyuan Xing, Shen Shen, Qingxian Zhang, Anding Xu, Zujiang Yu
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2020.00042

Suitability of Single-Nucleotide Polymorphism Arrays Versus Genotyping-By-Sequencing for Genebank Genomics in Wheat
Cited by: 24
Author(s): Jianting Chu, Yusheng Zhao, Sebastian Beier, Albert W. Schulthess, Nils Stein, Norman Philipp, Marion S. Röder, Jochen C. Reif
Software Mentions: 3
Published: over 6 years ago

10.3389/fpsyg.2016.00514

On the Development of Parafoveal Preprocessing: Evidence from the Incremental Boundary Paradigm
Cited by: 20
Author(s): Christina Marx, Florian Hutzler, Sarah Schuster, Stefan Hawelka
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0126859

Increased Expression of Angiogenic and Inflammatory Proteins in the Vitreous of Patients with Ischemic Central Retinal Vein Occlusion
Cited by: 42
Author(s): Christoph Ehlken, Bastian Grundel, Daniel de Sousa Michels, Bernd Junker, Andreas Stahl, Günther Schlunck, Lutz L. Hansen, Nicolas Feltgen, Gottfried Martin, Hansjürgen Agostini, Amelie Pielen
Software Mentions: 3
Published: over 11 years ago

10.1016/j.ajhg.2020.08.016

Unsupervised Clustering of Missense Variants in HNF1A Using Multidimensional Functional Data Aids Clinical Interpretation
Cited by: 23
Author(s): Sara Althari, Laeya Abdoli Najmi, Amanda J. Bennett, Ingvild Aukrust, Jana K. Rundle, Kevin Colclough, Janne Molnes, Alba Kaci, Sameena Nawaz, Timme van der Lugt, Neelam Hassanali, Anubha Mahajan, Anders Molven, Sian Ellard, Mark McCarthy, Lise Bjørkhaug, Pål Rasmus Njølstad, Anna L. Gloyn
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0161135

Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science
Cited by: 1
Author(s): Julio Montes-Torres, José Luis Subirats, Nuria Ribelles, Daniel Urda, Leonardo Franco, Emilio Alba, José M. Jerez
Software Mentions: 3
Published: about 10 years ago

10.1007/s10120-021-01195-4

Optimized PD-L1 scoring of gastric cancer
Cited by: 21
Author(s): Birgid Schoemig-Markiefka, Jana Eschbach, Andreas H. Scheel, Aylin Pamuk, Josef Rueschoff, Thomas Zander, Reinhard Buettner, Wolfgang Schröeder, Christiane Bruns, Heike Löser, Hakan Alakus, Alexander Quaas
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0172141

Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation
Cited by: 11
Author(s): Kelvin Kamfwa, Dongyan Zhao, James D. Kelly, Karen A. Cichy
Software Mentions: 3
Published: over 9 years ago

10.3389/fpls.2016.01229

Differential Network Analysis Reveals Evolutionary Complexity in Secondary Metabolism of Rauvolfia serpentina over Catharanthus roseus
Cited by: 13
Author(s): Shivalika Pathania, Ganesh Bagler, Paramvir Singh Ahuja
Software Mentions: 3
Published: about 10 years ago

10.3389/fpls.2021.654676

Transcriptome Analysis and RNA Interference Reveal GhGDH2 Regulating Cotton Resistance to Verticillium Wilt by JA and SA Signaling Pathways
Cited by: 14
Author(s): Xingjiang Xiong, Shichao Sun, Qian Zhu, Xinyu Zhang, Feng Liu, Yanjun Li, Fei Xue
Software Mentions: 3
Published: about 5 years ago

10.3389/fpls.2017.01585

HvPap-1 C1A Protease Participates Differentially in the Barley Response to a Pathogen and an Herbivore
Cited by: 11
Author(s): Mercedes Díaz-Mendoza, Blanca Velasco-Arroyo, M. Estrella Santamaría, Isabel Dı́az, Manuel Martínez
Software Mentions: 3
Published: almost 9 years ago

10.18632/aging.202775

Male-specific age estimation based on Y-chromosomal DNA methylation
Cited by: 11
Author(s): Athina Vidaki, Diego Montiel González, Benjamin Planterose Jiménez, Manfred Kayser
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2018.00066

The Dangers of Being a Small, Oligotrophic and Light Demanding Freshwater Plant across a Spatial and Historical Eutrophication Gradient in Southern Scandinavia
Cited by: 13
Author(s): Kaj Sand‐Jensen, Hans Henrik Bruun, Tora Finderup Nielsen, Ditte Marie Christiansen, Per Hartvig, Jens Chr. Schou, Lars Baastrup‐Spohr
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0192775

Functional characterization and genomic studies of a novel murine submandibular gland epithelial cell line
Cited by: 6
Author(s): Sang‐Won Min, Eun-Ah Christine Song, Akinsola Oyelakin, Christian Gluck, Kirsten Smalley, Rose‐Anne Romano
Software Mentions: 3
Published: over 8 years ago

10.3390/microorganisms9081734

Genome-Resolved Metagenomic Analyses Reveal the Presence of a Putative Bacterial Endosymbiont in an Avian Nasal Mite (Rhinonyssidae; Mesostigmata)
Cited by: 1
Author(s): Carolina Osuna‐Mascaró, Jorge Doña, Kevin P. Johnson, Manuel de Rojas
Software Mentions: 3
Published: about 5 years ago

10.3389/fpls.2021.666342

Sorghum Pan-Genome Explores the Functional Utility for Genomic-Assisted Breeding to Accelerate the Genetic Gain
Cited by: 36
Author(s): Pradeep Ruperao, Nepolean Thirunavukkarasu, Prasad Gandham, Sivasubramani Selvanayagam, Mahalingam Govindaraj, Baloua Nebié, Eric Manyasa, Rajeev Gupta, Roma Rani Das, Damaris Achieng Odeny, Harish Gandhi, David Edwards, Santosh Deshpande, Abhishek Rathore
Software Mentions: 3
Published: about 5 years ago

10.1186/gb-2004-5-11-r94

Cited by: 131
Author(s): Stephen Swift, Allan Tucker, Veronica Vinciotti, Nigel Martin, Christine A. Orengo, Xiaohui Liu, Paul Kellam
Software Mentions: 3
Published: over 22 years ago

10.1371/journal.pone.0117439

Effects of the Diet on the Microbiota of the Red Palm Weevil (Coleoptera: Dryophthoridae)
Cited by: 65
Author(s): Matteo Montagna, Bessem Chouaia, Giuseppe Mazza, Erica M. Prosdocimi, Elena Crotti, Valeria Mereghetti, Violetta Vacchini, Annamaria Giorgi, Alessio De Biase, S. Longo, Rita Cervo, G.C. Lozzia, Alberto Alma, Claudio Bandi, Daniele Daffonchio
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-2105-6-129

Considerations when using the significance analysis of microarrays (SAM) algorithm
Cited by: 110
Author(s): Ola Larsson, Claes Wahlestedt, James A. Timmons
Software Mentions: 3
Published: about 21 years ago

10.3390/antiox9121190

Differential Sex-Dependent Regulation of the Alveolar Macrophage miRNome of SP-A2 and co-ex (SP-A1/SP-A2) and Sex Differences Attenuation after 18 h of Ozone Exposure
Cited by: 7
Author(s): Nithyananda Thorenoor, David S. Phelps, Joanna Floros
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0251827

Multiple spatial reference frames underpin perceptual recalibration to audio-visual discrepancies
Cited by: 8
Author(s): David Watson, Michael A. Akeroyd, Neil W. Roach, Ben S. Webb
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pmed.1003062

Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis
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Author(s): Tom G Richardson, Eleanor Sanderson, Tom Palmer, Mika Ala‐Korpela, Brian А. Ference, George Davey Smith, Michael V Holmes
Software Mentions: 3
Published: over 6 years ago

10.3389/fonc.2021.705384

Wnt/β-Catenin Inhibition Disrupts Carboplatin Resistance in Isogenic Models of Triple-Negative Breast Cancer
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Author(s): Willy Antoni Abreu de Oliveira, Stijn Moens, Youssef El Laithy, Bernard K. van der Veer, Paraskevi Athanasouli, Emanuela Elsa Cortesi, Maria Francesca Baietti, Kian Peng Koh, Juan-José Ventura, Frédéric Amant, Daniela Annibali, Frederic Lluı́s
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0143436

Analysis of Stage-Specific Gene Expression Profiles in the Uterine Endometrium during Pregnancy in Pigs
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Author(s): Mingoo Kim, Heewon Seo, Yohan Choi, Inkyu Yoo, Minseok Seo, Chang Kyu Lee, Heebal Kim, Hakhyun Ka
Software Mentions: 3
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10.1371/journal.pntd.0008131

Potential distributions of Bacillus anthracis and Bacillus cereus biovar anthracis causing anthrax in Africa
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Author(s): Daniel Romero-Álvarez, A. Townsend Peterson, Johanna S. Salzer, Claudia Pittiglio, Sean V. Shadomy, Rita M. Traxler, Antonio Vieira, William A. Bower, Henry Walke, Lindsay P. Campbell
Software Mentions: 3
Published: over 6 years ago

10.1099/mgen.0.000154

Comparative transcriptomics of Aspergillus fumigatus strains upon exposure to human airway epithelial cells
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Author(s): Tonya Watkins, Hong Liu, Matthew Chung, Tracy H. Hazen, Julie C. Dunning Hotopp, Scott G. Filler, Vincent M. Bruno
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0070017

Genes Dysregulated to Different Extent or Oppositely in Estrogen Receptor-Positive and Estrogen Receptor-Negative Breast Cancers
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Author(s): Xianxiao Zhou, Tao Shi, Bailiang Li, Yuannv Zhang, Xiaopei Shen, Hongdong Li, Hong Guan, Chunyang Liu, Zheng Guo
Software Mentions: 3
Published: about 13 years ago

10.3389/fmolb.2020.598221

ANTXR1 Is a Prognostic Biomarker and Correlates With Stromal and Immune Cell Infiltration in Gastric Cancer
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Author(s): Xiaodong Huang, Jie Zhang, Yongbin Zheng
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-021-08016-z

Transcriptome profile of the sinoatrial ring reveals conserved and novel genetic programs of the zebrafish pacemaker
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Author(s): Rashid Minhas, Henry Loeffler‐Wirth, Yusra Siddiqui, Tomasz Obrębski, Shikha Vashisht, Karim Abu Nahia, Aleksandra Paterek, Angelika Brzozowska, Łukasz Bugajski, Katarzyna Piwocka, Vladimir Korzh, Hans Binder, Cecilia Lanny Winata
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12859-020-03622-2

Conditional permutation importance revisited
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Author(s): Dries Debeer, Carolin Strobl
Software Mentions: 3
Published: about 6 years ago

10.1111/2041-210X.12246

Effects of phylogenetic reconstruction method on the robustness of species delimitation using single‐locus data
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Author(s): Cuong Q. Tang, Aelys M. Humphreys, Diego Fontaneto, Timothy G. Barraclough
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0166586

Cohesion and Coalition Formation in the European Parliament: Roll-Call Votes and Twitter Activities
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Author(s): Darko Cherepnalkoski, Andreas Karpf, Igor Mozetič, Miha Grčar
Software Mentions: 3
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10.1371/journal.pone.0230865

Guano morphology has the potential to inform conservation strategies in British bats
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Author(s): Roselyn Ware, Benjamin Garrod, Hannah Macdonald, Robin G. Allaby
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2017.01595

The Geographic Distribution of Saccharomyces cerevisiae Isolates within three Italian Neighboring Winemaking Regions Reveals Strong Differences in Yeast Abundance, Genetic Diversity and Industrial Strain Dissemination
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Author(s): Alessia Viel, Jean Luc Legras, Chiara Nadai, Milena Carlot, Angiolella Lombardi, Manna Crespan, Daniele Migliaro, Alessio Giacomini
Software Mentions: 3
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10.1371/journal.pone.0080540

Association Testing Strategy for Data from Dense Marker Panels
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Software Mentions: 3
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10.1371/journal.pone.0059927

Pyrosequencing Reveals High-Temperature Cellulolytic Microbial Consortia in Great Boiling Spring after In Situ Lignocellulose Enrichment
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Software Mentions: 3
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10.1186/s12859-020-3500-3

circRNAprofiler: an R-based computational framework for the downstream analysis of circular RNAs
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Software Mentions: 3
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10.1371/journal.pone.0038347

Inhibition of Specific NF-κB Activity Contributes to the Tumor Suppressor Function of 14-3-3σ in Breast Cancer
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Software Mentions: 3
Published: about 14 years ago

10.3389/fmicb.2018.02668

Ancestrality and Mosaicism of Giant Viruses Supporting the Definition of the Fourth TRUC of Microbes
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Software Mentions: 3
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10.3389/fonc.2019.01144

Quantitative Spatial Analysis of Metabolic Heterogeneity Across in vivo and in vitro Tumor Models
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Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0193301

Association of whole blood n-6 fatty acids with stunting in 2-to-6-year-old Northern Ghanaian children: A cross-sectional study
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Author(s): Mary Adjepong, C. Austin Pickens, Raghav Jain, William S. Harris, Reginald Adjetey Annan, Jenifer I. Fenton
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0114047

Statistical Modeling of the Abundance of Vectors of West African Rift Valley Fever in Barkédji, Senegal
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Software Mentions: 3
Published: over 11 years ago

10.1186/1471-2105-12-S1-S36

Integrated metabolome and transcriptome analysis of the NCI60 dataset
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Author(s): Gang Su, Charles F. Burant, Christopher W.W. Beecher, Brian D. Athey, Fan Meng
Software Mentions: 3
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10.1186/s12933-021-01299-2

Metabolic syndrome and the plasma proteome: from association to causation
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Author(s): Mohamed A. Elhadad, Rory Wilson, Shaza B. Zaghlool, Cornelia Huth, Christian Gieger, Harald Grallert, Johannes Graumann, Wolfgang Rathmann, Wolfgang Köenig, Moritz F. Sinner, Kristian Hveem, Karsten Suhre, Barbara Thorand, Christian Jonasson, Mélanie Waldenberger, Annette Peters
Software Mentions: 3
Published: over 5 years ago

10.1186/2049-3002-2-18

Metabolic reprogramming induced by ketone bodies diminishes pancreatic cancer cachexia
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Author(s): Surendra K. Shukla, Teklab Gebregiworgis, Vinee Purohit, Nina V. Chaika, Venugopal Gunda, Prakash Radhakrishnan, Kamiya Mehla, Iraklis I. Pipinos, Robert Powers, Fang Yu, Pankaj K. Singh
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0182533

A survey of the mycobiota associated with larvae of the black soldier fly (Hermetia illucens) reared for feed production
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Software Mentions: 3
Published: about 9 years ago

10.1002/cam4.1107

Comparative proteomic profiling of the serum differentiates pancreatic cancer from chronic pancreatitis
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Author(s): Mayank Saraswat, Sakari Joenväärä, Hanna Seppänen, Harri Mustonen, Caj Haglund, Risto Renkonen
Software Mentions: 3
Published: about 9 years ago

Projects: pypi: package

Science Score: 65/100

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Papers Mentioning package 1,300