pypi: package | Projects | Ecosyste.ms: Papers

10.1111/1462-2920.14569

Competition and predation as possible causes of bacterial rarity
Cited by: 23
Author(s): Viola Kurm, Wim H. van der Putten, Simone Weidner, Stefan Geisen, L. Basten Snoek, Tanja Bakx, W. H. Gera Hol
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-016-0885-0

Deciphering transcriptional regulations coordinating the response to environmental changes
Cited by: 1
Author(s): Vicente Acuña, Andrés Aravena, Carito Guziołowski, Damien Eveillard, Anne Siegel, Alejandro Maass
Software Mentions: 3
Published: almost 10 years ago

10.1111/os.12519

Discovery and Identification of Serum Succinyl‐Proteome for Postmenopausal Women with Osteoporosis and Osteopenia
Cited by: 1
Author(s): Lili Zhang, Chunwen Li, Kang Liu, Zhong Liu, Bo Liang, Yiran Yang, Xiaoyi Shi
Software Mentions: 3
Published: about 6 years ago

10.18632/oncotarget.24522

Luminal breast cancer-specific circular RNAs uncovered by a novel tool for data analysis
Cited by: 28
Author(s): Lucia Coscujuela Tarrero, Giulio Ferrero, Valentina Miano, Carlo De Intinis, Luisa Ricci, Maddalena Arigoni, Federica Riccardo, Laura Annaratone, Isabella Castellano, Raffaele Calogero, Marco Beccuti, Francesca Cordero, Michele De Bortoli
Software Mentions: 3
Published: over 7 years ago

10.18632/oncotarget.26300

Exosomes impact survival to radiation exposure in cell line models of nervous system cancer
Cited by: 52
Author(s): Oliver Mrowczynski, A. Madhankumar, Jeffrey M. Sundstrom, Yuanjun Zhao, Yuka Imamura Kawasawa, Becky Slagle‐Webb, Christine Mau, Russell Payne, Elias Rizk, Brad E. Zacharia, James R. Connor
Software Mentions: 3
Published: almost 7 years ago

10.1098/rsbl.2016.0432

Behavioural adaptations to flight into thin air
Cited by: 22
Author(s): Sherub Sherub, Gil Bohrer, Martin Wikelski, Rolf Weinzierl
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0078288

Improved Statistical Analysis of Low Abundance Phenomena in Bimodal Bacterial Populations
Cited by: 15
Author(s): Friedrich Reinhard, Jan Roelof van der Meer
Software Mentions: 3
Published: about 12 years ago

10.3390/ani10111943

Efficacy of Oxyclozanide and Closantel against Rumen Flukes (Paramphistomidae) in Naturally Infected Sheep
Cited by: 7
Author(s): David García-Dios, Pablo Díaz, M. Viña, Susana Remesar, Alberto Prieto, Gonzalo López-Lorenzo, José Manuel Díaz Cao, Rosario Panadero Fontán, P. Díez‐Baños, C. López
Software Mentions: 3
Published: about 5 years ago

10.1007/s10265-019-01134-6

Population genetic structure and demography of Magnolia kobus: variety borealis is not supported genetically
Cited by: 12
Author(s): Ichiro Tamaki, Naomichi Kawashima, Suzuki Setsuko, Jung-Hyun Lee, Akemi Itaya, Kyohei Yukitoshi, Nobuhiro Tomaru
Software Mentions: 3
Published: about 6 years ago

10.3390/nu13020637

Sex-Dependent Effects of 7,8-Dihydroxyflavone on Metabolic Health Are Associated with Alterations in the Host Gut Microbiome
Cited by: 8
Author(s): Pulkit Sharma, Guojun Wu, Deeptha Kumaraswamy, Natalie Burchat, Hong Ye, Yongjia Gong, Liping Zhao, Yan Y. Lam, Harini Sampath
Software Mentions: 3
Published: over 4 years ago

10.1002/ece3.5858

Quantitative and qualitative consequences of reduced pollen loads in a mixed‐mating plant
Cited by: 10
Author(s): Laura Hildesheim, Øystein H. Opedal, W. Scott Armbruster, Christophe Pélabon
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0123009

Parasite Load Induces Progressive Spleen Architecture Breakage and Impairs Cytokine mRNA Expression in Leishmania infantum-Naturally Infected Dogs
Cited by: 50
Author(s): Amanda dos Santos Cavalcanti, Marcelo Ribeiro-Alves, Luiza de Oliveira Ramos Pereira, Gustavo Leandro da Cruz Mestre, Anna Beatriz Robottom Ferreira, Fernanda Nazaré Morgado, Mariana Côrtes Boité, Elisa Cupolillo, Milton Ozório Moraes, Renato Porrozzi
Software Mentions: 3
Published: over 10 years ago

10.1002/ece3.6159

Canadian polar bear population structure using genome‐wide markers
Cited by: 8
Author(s): Evelyn L. Jensen, Christina Tschritter, Peter van Coeverden de Groot, Kristen M. Hayward, Marsha Branigan, Markus Dyck, Rute B. G. Clemente-Carvalho
Software Mentions: 3
Published: over 5 years ago

10.18632/oncotarget.17510

Differential expression of circulating biomarkers of tumor phenotype and outcomes in previously treated non-small cell lung cancer patients receiving erlotinib vs. cytotoxic chemotherapy
Cited by: 7
Author(s): Mary J. Fidler, Casey Frankenberger, Richard Seto, Gabriela C. Lobato, Cristina Fhied, Selina Sayidine, Sanjib Basu, Mark Pool, Reem Karmali, Marta Batus, Wen-Rong Lie, D. Neil Hayes, Jehangir Mistry, Philip Bonomi, Jeffrey A. Borgia
Software Mentions: 3
Published: over 8 years ago

10.1186/1756-0381-2-3

Partitioning clustering algorithms for protein sequence data sets
Cited by: 17
Author(s): Sondès Fayech, Nadia Essoussi, Mohamed Limam
Software Mentions: 3
Published: over 16 years ago

10.3390/ijms21020386

Fecal Microbiota Transplantation Prevents Intestinal Injury, Upregulation of Toll-Like Receptors, and 5-Fluorouracil/Oxaliplatin-Induced Toxicity in Colorectal Cancer
Cited by: 100
Author(s): Ching Wei Chang, Hung Chang Lee, Li Hui Li, Jen-Shiu Chiang Chiau, Tsang En Wang, Wei Hung Chuang, Ming Jen Chen, Horng Yuan Wang, Shou Chuan Shih, Chia Yuan Liu, Tung Hu Tsai, Yu-Jen Chen
Software Mentions: 3
Published: almost 6 years ago

10.1186/1472-6874-12-9

Treatment of endometriosis in different ethnic populations: a meta-analysis of two clinical trials
Cited by: 28
Author(s): Christoph Gerlinger, Thomas Faustmann, Jeffrey J Hassall, Christian Seitz
Software Mentions: 3
Published: over 13 years ago

10.1371/journal.pmed.1003765

Impact of color-coded and warning nutrition labelling schemes: A systematic review and network meta-analysis
Cited by: 62
Author(s): Jieqiong Song, Mhairi K. Brown, Monique Tan, Graham A. MacGregor, Jacqui Webster, Norm R.C. Campbell, Kathy Trieu, Cliona Ní Mhurchú, Laura K. Cobb, Feng J He
Software Mentions: 3
Published: about 4 years ago

10.7554/eLife.54928

A broad mutational target explains a fast rate of phenotypic evolution
Cited by: 11
Author(s): Fabrice Besnard, João Picão-Osório, Clément Dubois, Marie‐Anne Félix
Software Mentions: 3
Published: about 5 years ago

10.1002/ece3.3043

Effects of Alpine land‐use changes: Soil macrofauna community revisited
Cited by: 20
Author(s): Michael Steinwandter, Birgit C. Schlick‐Steiner, Gilg Seeber, Florian M. Steiner, Julia Seeber
Software Mentions: 3
Published: over 8 years ago

10.1002/ece3.3505

Residence time, native range size, and genome size predict naturalization among angiosperms introduced to Australia
Cited by: 9
Author(s): John P. Schmidt, John M. Drake, Patrick R. Stephens
Software Mentions: 3
Published: about 8 years ago

10.1002/ece3.6412

Lunar synchronization of daily activity patterns in a crepuscular avian insectivore
Cited by: 17
Author(s): Ruben Evens, Céline Kowalczyk, Gabriel Norevik, Eddy Ulenaers, Batmunkh Davaasuren, Soddelgerekh Bayargur, Tom Artois, Susanne Åkesson, Anders Hedenström, Félix Liechti, Mihai Vâlcu, Bart Kempenaers
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pgen.1008840

The kinase Isr1 negatively regulates hexosamine biosynthesis in S. cerevisiae
Cited by: 3
Author(s): Emma B Alme, Erica Stevenson, Nevan J. Krogan, Danielle L. Swaney, David P. Toczyski
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.6545

Lousy grouse: Comparing evolutionary patterns in Alaska galliform lice to understand host evolution and host–parasite interactions
Cited by: 9
Author(s): Andrew D. Sweet, R. E. Wilson, Sarah A. Sonsthagen, Kevin P. Johnson
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms20071795

Bone Marrow Endothelial Cells Influence Function and Phenotype of Hematopoietic Stem and Progenitor Cells after Mixed Neutron/Gamma Radiation
Cited by: 8
Author(s): Lynnette H. Cary, Daniel Noutai, Rudolph E. Salber, Opeyemi Fadiyimu, Arthur Gross, Graça Almeida-Porada, Kidane Yared, Mark H. Whitnall
Software Mentions: 3
Published: over 6 years ago

10.1167/iovs.17-22173

Novel Myopia Genes and Pathways Identified From Syndromic Forms of Myopia
Cited by: 47
Author(s): Daniel Ian Flitcroft, James Loughman, Christine F. Wildsoet, Cathy Williams, Jeremy A. Guggenheim
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pgen.1002565

Tcf7 Is an Important Regulator of the Switch of Self-Renewal and Differentiation in a Multipotential Hematopoietic Cell Line
Cited by: 92
Author(s): Jia Qian Wu, Montrell Seay, Vincent P. Schulz, Manoj Hariharan, David Tuck, Lian Jin, Jie Du, Minyi Shi, Zhijia Ye, Mark Gerstein, M Snyder, Sherman M. Weissman
Software Mentions: 3
Published: over 13 years ago

10.1186/s13104-021-05729-y

XPolaris: an R-package to retrieve United States soil data at 30-meter resolution
Cited by: 3
Author(s): Luiz H. Moro Rosso, André Fróes de Borja Reis, Adrián A. Correndo, Ignacio A. Ciampitti
Software Mentions: 3
Published: about 4 years ago

10.1186/s40560-021-00539-7

Association of noninvasive respiratory support with mortality and intubation rates in acute respiratory failure: a systematic review and network meta-analysis
Cited by: 7
Author(s): Hideto Yasuda, Hiromu Okano, Takuya Mayumi, Masaki Nakane, Nobuaki Shime
Software Mentions: 3
Published: over 4 years ago

10.1128/mSphere.00482-19

Genomic Variation among Strains of Crithidia bombi and C. expoeki
Cited by: 7
Author(s): Evgeny S. Gerasimov, Niklaus Zemp, Regula Schmid‐Hempel, Paul Schmid‐Hempel, Vyacheslav Yurchenko
Software Mentions: 3
Published: about 6 years ago

10.1002/joc.4326

Asymmetric trends in seasonal temperature variability in instrumental records from ten stations in Switzerland, Germany and the <scp>UK</scp> from 1864 to 2012
Cited by: 32
Author(s): Michael Matiu, Donna P. Ankerst, Annette Menzel
Software Mentions: 3
Published: over 10 years ago

10.1128/mBio.00987-21

Shared and Unique Evolutionary Trajectories to Ciprofloxacin Resistance in Gram-Negative Bacterial Pathogens
Cited by: 7
Author(s): Jaime E. Zlamal, Semen A. Leyn, Mallika Iyer, Marinela L. Elane, Nicholas Wong, James W. Wamsley, Maarten Vercruysse, Fernando García-Alcalde, Andrei L. Osterman
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.02407

Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons
Cited by: 464
Author(s): Iris Jonkers, Ho Young Kwak, John T. Lis
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pcbi.1000300

Alu Exonization Events Reveal Features Required for Precise Recognition of Exons by the Splicing Machinery
Cited by: 55
Author(s): Schraga Schwartz, Nurit Gal-Mark, Nir Kfir, Oren Ram, Eddo Kim, Gil Ast
Software Mentions: 3
Published: over 16 years ago

10.1038/tp.2016.101

Epigenetic differences in monozygotic twins discordant for major depressive disorder
Cited by: 37
Author(s): Karim Malki, Elena Koritskaya, Fraser Harris, Kevin Bryson, Mark Herbster, Maria Grazia Tosto
Software Mentions: 3
Published: over 9 years ago

10.1002/sim.8450

Improving safety of the continual reassessment method via a modified allocation rule
Cited by: 8
Author(s): Pavel Mozgunov, Thomas Jaki
Software Mentions: 3
Published: almost 6 years ago

10.1177/0962280219873005

Simultaneous inference for multiple marginal generalized estimating equation models
Cited by: 8
Author(s): Robin Ristl, Ludwig A. Hothorn, Christian Ritz, Martin Posch
Software Mentions: 3
Published: about 6 years ago

10.1101/2020.08.22.262931

Theoretical basis for stabilizing messenger RNA through secondary structure design
Cited by: 16
Author(s): Hannah K. Wayment-Steele, Do Soon Kim, Christian A. Choe, John J Nicol, Roger Wellington-Oguri, Andrew Watkins, R Andres Parra Sperberg, Po-Ssu Huang, Eterna Participants, Rhiju Das
Software Mentions: 3
Published: about 5 years ago

10.3390/s21072447

A BCI Based Alerting System for Attention Recovery of UAV Operators
Cited by: 8
Author(s): Jong-Hyuk Park, Jonghun Park, Dongmin Shin, Yerim Choi
Software Mentions: 3
Published: over 4 years ago

10.1186/s13148-019-0619-z

Discovery and validation of DNA methylation markers for overall survival prognosis in patients with thymic epithelial tumors
Cited by: 16
Author(s): Songlin Li, Yuan Yuan, He Xiao, Jiajia Dai, Yunfei Ye, Qin Zhang, Zhimin Zhang, Yuhan Jiang, Jia Luo, Jing Hu, Chuan Chen, Ge Wang
Software Mentions: 3
Published: over 6 years ago

10.1038/s42003-018-0176-6

Incomplete lineage sorting rather than hybridization explains the inconsistent phylogeny of the wisent
Cited by: 76
Author(s): Kun Wang, Johannes A. Lenstra, Liang Liu, Quanjun Hu, Tao Ma, Qiang Qiu, Jianquan Liu
Software Mentions: 3
Published: about 7 years ago

10.1186/s13395-020-00236-3

A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated muscle stem cell populations
Cited by: 109
Author(s): Andrea De Micheli, Jason A. Spector, Olivier Elemento, Benjamin D. Cosgrove
Software Mentions: 3
Published: over 5 years ago

10.1002/sim.7628

Targeted maximum likelihood estimation for a binary treatment: A tutorial
Cited by: 70
Author(s): Miguel Ángel Luque-Fernandez, Michael Schomaker, Bernard Rachet, Mireille E. Schnitzer
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2229-13-122

P-TRAP: a Panicle Trait Phenotyping tool
Cited by: 66
Author(s): Faroq Al-Tam, Hélène Adam, António dos Anjos, Mathias Lorieux, Pierre Larmande, Alain Ghesquière, Stéfan Jouannic, Hamid Reza Shahbazkia
Software Mentions: 3
Published: about 12 years ago

10.3390/ph14010041

Modulation of the Immune Response by Deferasirox in Myelodysplastic Syndrome Patients
Cited by: 4
Author(s): Hana Votavová, Zuzana Urbanová, David Kundrát, Michaela Dostálová Merkerová, Martin Vostrý, Monika Hruba, Jaroslav Čermák, Monika Beličková
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj.7366

Asexual reproduction of a few genotypes favored the invasion of the cereal aphidRhopalosiphum padiin Chile
Cited by: 4
Author(s): María E Rubio-Meléndez, Joceline Barrios-Sanmartín, Felipe E. Pina-Castro, Christian C. Figueroa, C. Ramı́rez
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.6115

The role of Central American barriers in shaping the evolutionary history of the northernmost glassfrog,Hyalinobatrachium fleischmanni(Anura: Centrolenidae)
Cited by: 19
Author(s): Ángela María Mendoza, Wilmar Bolívar-García, Ella Vázquez‐Domínguez, Roberto Ibáñez, Gabriela Parra Olea
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2014.00250

Phenome-wide association studies demonstrating pleiotropy of genetic variants within FTO with and without adjustment for body mass index
Cited by: 60
Author(s): Robert M. Cronin, Julie R. Field, Yuki Bradford, Christian M. Shaffer, Robert J. Carroll, Jonathan D. Mosley, Lisa Bastarache, Todd L. Edwards, Scott J. Hebbring, Simon Lin, Lucia A. Hindorff, Paul K. Crane, Sarah A. Pendergrass, Marylyn D. Ritchie, Dana C. Crawford, Jyotishman Pathak, Suzette J. Bielinski, David Carrell, David R. Crosslin, David H. Ledbetter, David J. Carey, Gerard Tromp, Marc S. Williams, Eric B. Larson, Gail P. Jarvik, Peggy L. Peissig, Murray H. Brilliant, Catherine A. McCarty, Christopher G. Chute, Iftikhar J. Kullo, Erwin Böttinger, Rex L. Chisholm, Maureen E. Smith, Dan M. Roden, Joshua C. Denny
Software Mentions: 3
Published: about 11 years ago

10.7717/peerj.8683

Patterns of change in α and β taxonomic and phylogenetic diversity in the secondary succession of semi-natural grasslands in the Northern Apennines
Cited by: 6
Author(s): Lorenzo Lazzaro, Lorenzo Lastrucci, Daniele Viciani, Renato Benesperi, Vincenzo Gonnelli, Andrea Coppi
Software Mentions: 3
Published: over 5 years ago

10.3390/cells9010165

In Silico Analysis of the Age-Dependent Evolution of the Transcriptome of Mouse Skin Stem Cells
Cited by: 4
Author(s): L. Francisco Lorenzo‐Martín, Xosé R. Bustelo
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-021-85850-x

On the use of envelope following responses to estimate peripheral level compression in the auditory system
Cited by: 5
Author(s): Gerard Encina-Llamas, Torsten Dau, Bastian Epp
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-020-72735-8

Genome-wide association mapping for wheat blast resistance in CIMMYT’s international screening nurseries evaluated in Bolivia and Bangladesh
Cited by: 26
Author(s): Philomin Juliana, Xinyao He, Muhammad Rezaul Kabir, Krishna Kanta Roy, Md. Babul Anwar, Félix Marza, Jesse Poland, Sandesh Shrestha, Ravi P. Singh, Pawan Kumar Singh
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-020-73748-z

Demographic history and adaptive synonymous and nonsynonymous variants of nuclear genes in Rhododendron oldhamii (Ericaceae)
Cited by: 1
Author(s): Yi Chiang Hsieh, Chih-Hsiung Chang, Jeng Der Chung, Shih Ying Hwang
Software Mentions: 3
Published: about 5 years ago

10.3758/s13414-015-0860-2

The long and the short of priming in visual search
Cited by: 24
Author(s): Wouter Kruijne, Martijn Meeter
Software Mentions: 3
Published: over 10 years ago

10.1186/1756-3305-6-359

Bayesian geostatistical modelling of soil-transmitted helminth survey data in the People’s Republic of China
Cited by: 49
Author(s): Ying-Si Lai, Xiao‐Nong Zhou, Jürg Utzinger, Penelope Vounatsou
Software Mentions: 3
Published: almost 12 years ago

10.1038/s41598-020-65115-9

Dichotomy between the transcriptomic landscape of naturally versus accelerated aged murine hearts
Cited by: 0
Author(s): Federica De Majo, Jana-Charlotte Hegenbarth, Frank Rühle, Christian Bär, Thomas Thum, Martine de Boer, Dirk J. Duncker, Blanche Schroen, Anne-Sophie Armand, Monika Stoll, León J. De Windt
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0141830

Discovery of Genome-Wide Microsatellite Markers in Scombridae: A Pilot Study on Albacore Tuna
Cited by: 5
Author(s): Natacha Nikolic, Stéphanie Duthoy, Antoine Destombes, Nathalie Bodin, Wendy West, Alexis Puech, Jérôme Bourjea
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0245685

Brain organoid formation on decellularized porcine brain ECM hydrogels
Cited by: 44
Author(s): Robin Simsa, Theresa S.P. Rothenbücher, Hakan Gürbüz, Nidal Ghosheh, Jenny Emnéus, Lachmi Jenndahl, David L. Kaplan, Niklas Bergh, Alberto Martínez Serrano, Per Fogelstrand
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0008320

Applied Climate-Change Analysis: The Climate Wizard Tool
Cited by: 158
Author(s): Evan H. Girvetz, Chris Zganȷar, George T. Raber, Edwin P. Maurer, Peter Kareiva, Joshua J. Lawler
Software Mentions: 3
Published: almost 16 years ago

10.1038/s41598-020-61178-w

Radiomics prognostication model in glioblastoma using diffusion- and perfusion-weighted MRI
Cited by: 41
Author(s): Ji Eun Park, Ho Sung Kim, Youngheun Jo, Roh Eul Yoo, Seung Hong Choi, Soo Jung Nam
Software Mentions: 3
Published: over 5 years ago

10.3390/v10040192

Full Genome Sequencing Reveals New Southern African Territories Genotypes Bringing Us Closer to Understanding True Variability of Foot-and-Mouth Disease Virus in Africa
Cited by: 22
Author(s): Lidia Lasecka-Dykes, Caroline F. Wright, Antonello Di Nardo, Greg Logan, Valérie Mioulet, Terry Jackson, Tobias J. Tuthill, Nick J. Knowles, Donald P. King
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-36300-8

Robust in-silico identification of Cancer Cell Lines based on RNA and targeted DNA sequencing data
Cited by: 1
Author(s): Raik Otto, Jan-Niklas Rössler, Christine Sers, Soulafa Mamlouk, Ulf Leser
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-018-33693-4

RNA sequencing and de novo assembly of Solanum trilobatum leaf transcriptome to identify putative transcripts for major metabolic pathways
Cited by: 17
Author(s): Adil Lateef, Sudheesh K. Prabhudas, Purushothaman Natarajan
Software Mentions: 3
Published: about 7 years ago

10.1186/s12985-019-1253-2

HPV viral load in self-collected vaginal fluid samples as predictor for presence of cervical intraepithelial neoplasia
Cited by: 10
Author(s): Malin Berggrund, Inger Gustavsson, Riina Aarnio, Julia Hedlund-Lindberg, Karin Sanner, Ingrid Wikström, Stefan Enroth, Matts Olovsson, Ulf Gyllensten
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0095347

Identification of Gene Expression Changes from Colitis to CRC in the Mouse CAC Model
Cited by: 14
Author(s): Xin Li, Yuyan Gao, Ming Yang, Qi Zhao, Guangyu Wang, Yan Yang, Yue Yang, Hui Liu, Yanqiao Zhang
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0084573

A DNA Methylation Network Interaction Measure, and Detection of Network Oncomarkers
Cited by: 28
Author(s): Thomas E. Bartlett, Sofia C. Olhede, Alexey Zaikin
Software Mentions: 3
Published: almost 12 years ago

10.1038/s41598-018-32514-y

Agricultural landscapes and the Loire River influence the genetic structure of the marbled newt in Western France
Cited by: 5
Author(s): Jean‐Marc Costanzi, Pascal Mège, Alexandre Boissinot, Françis Isselin-Nondedeu, Sarah M. Guérin, Olivier Lourdais, Audrey Trochet, Quentin Le Petitcorps, Agathe Legrand, François Varenne, Pierre Antoine Grillet, Sophie Morin-Pinaud, Damien Picard
Software Mentions: 3
Published: about 7 years ago

10.1186/s12859-016-0975-z

CoeViz: a web-based tool for coevolution analysis of protein residues
Cited by: 39
Author(s): Frazier N. Baker, Aleksey Porollo
Software Mentions: 3
Published: over 9 years ago

10.1016/j.cub.2020.10.025

The Proteomic Landscape of Centromeric Chromatin Reveals an Essential Role for the Ctf19CCAN Complex in Meiotic Kinetochore Assembly
Cited by: 11
Author(s): Weronika E. Borek, Nadine Vincenten, Eris Duro, Vasso Makrantoni, Christos Spanos, Krishna K. Sarangapani, Flávia de Lima Alves, David A. Kelly, Charles L. Asbury, Juri Rappsilber, Adèle L. Marston
Software Mentions: 3
Published: almost 5 years ago

10.1186/1755-8794-6-28

Whole transcriptome sequencing identifies tumor-specific mutations in human oral squamous cell carcinoma
Cited by: 24
Author(s): Zhilin Qu, Jun Zhang, Hong Jin, Sitong Sheng
Software Mentions: 3
Published: about 12 years ago

10.1186/1472-6785-12-19

Contrasting habitat associations of imperilled endemic stream fishes from a global biodiversity hot spot
Cited by: 18
Author(s): Albert Chakona, Ernst R. Swartz
Software Mentions: 3
Published: almost 14 years ago

10.1038/s41598-018-24508-7

Tracing of the fecal microbiota of commercial pigs at five growth stages from birth to shipment
Cited by: 72
Author(s): Geon Goo Han, Jun-Yeong Lee, Gwi-Deuk Jin, Jongbin Park, Yo Han Choi, Seoung-Hun Kang, B. J. Chae, Eun Bae Kim, Yun‐Jaie Choi
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-27474-2

A Canonical Biophysical Model of the CsrA Global Regulator Suggests Flexible Regulator-Target Interactions
Cited by: 7
Author(s): Abigail N. Leistra, Grant Gelderman, Steven W. Sowa, Alex Moon-Walker, Howard M. Salis, Lydia M. Contreras
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0165823

Transcriptome Profiling of the Phaseolus vulgaris - Colletotrichum lindemuthianum Pathosystem
Cited by: 37
Author(s): Bilal A. Padder, Kelvin Kamfwa, Halima E. Awale
Software Mentions: 3
Published: almost 9 years ago

10.1038/s41598-019-46492-2

Global impact of diet and temperature over aquaculture of Octopus vulgaris paralarvae from a transcriptomic approach
Cited by: 24
Author(s): Pablo García-Fernández, María Prado-Álvarez, Manuel Nande, Daniel García de la serrana, C. Perales-Raya, E. Almansa, Inmaculada Varó, Camino Gestal
Software Mentions: 3
Published: over 6 years ago

10.1002/1878-0261.12903

REST promotes ETS1‐dependent vascular growth in medulloblastoma
Cited by: 9
Author(s): Shavali Shaik, Satoru Maegawa, Amanda R. Haltom, Feng Wang, Xue Xiao, Tara Dobson, Ajay Sharma, Yanwen Yang, Jyothishmathi Swaminathan, Vikas Kundra, Xiao Nan Li, Keri Schadler, Arif Harmanci, Lin Xu, Vidya Gopalakrishnan
Software Mentions: 3
Published: over 4 years ago

10.1038/s41597-020-00702-z

LCVP, The Leipzig catalogue of vascular plants, a new taxonomic reference list for all known vascular plants
Cited by: 47
Author(s): Martin Freiberg, Marten Winter, Alessandro Gentile, Alexander Zizka, Alexandra N. Muellner‐Riehl, Alexandra Weigelt, Christian Wirth
Software Mentions: 3
Published: almost 5 years ago

10.1002/pmic.201700388

Integrative Analysis of Proteome and Ubiquitylome Reveals Unique Features of Lysosomal and Endocytic Pathways in Gefitinib‐Resistant Non‐Small Cell Lung Cancer Cells
Cited by: 19
Author(s): Wang Li, Heyong Wang, Yan Yang, Tian Zhao, Zhixiong Zhang, Ye Tian, Zhaomie Shi, Xiaojun Peng, Fēi Li, Yonghong Feng, Lei Zhang, Gening Jiang, Fan Zhang
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0113567

Movement Pattern Variability in Stone Knapping: Implications for the Development of Percussive Traditions
Cited by: 25
Author(s): Robert Rein, Tomomi Nonaka, Blandine Bril
Software Mentions: 3
Published: almost 11 years ago

10.1155/2020/5314187

To Probe Full and Partial Activation of Human Peroxisome Proliferator-Activated Receptors by Pan-Agonist Chiglitazar Using Molecular Dynamics Simulations
Cited by: 6
Author(s): Holli-Joi Sullivan, Xiaoyan Wang, Shaina Nogle, Susan Liao, Chun Wu
Software Mentions: 3
Published: over 5 years ago

10.1002/jcp.29046

Identification of methylation‐driven genes related to prognosis in clear‐cell renal cell carcinoma
Cited by: 11
Author(s): Jia Wang, Qiujing Zhang, Qingqing Zhu, Chengxiang Li, Xueli Nan, Fuxia Wang, Lihua Fang, Jie Liu, Chao Xie, Shuai Fu, Bao-Liang Song
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0126859

Increased Expression of Angiogenic and Inflammatory Proteins in the Vitreous of Patients with Ischemic Central Retinal Vein Occlusion
Cited by: 42
Author(s): Christoph Ehlken, Bastian Grundel, Daniel de Sousa Michels, Bernd Junker, Andreas Stahl, Günther Schlunck, Lutz L. Hansen, Nicolas Feltgen, Gottfried Martin, Hansjürgen Agostini, Amelie Pielen
Software Mentions: 3
Published: over 10 years ago

10.1016/j.ajhg.2020.08.016

Unsupervised Clustering of Missense Variants in HNF1A Using Multidimensional Functional Data Aids Clinical Interpretation
Cited by: 23
Author(s): Sara Althari, Laeya Abdoli Najmi, Amanda J. Bennett, Ingvild Aukrust, Jana K. Rundle, Kevin Colclough, Janne Molnes, Alba Kaci, Sameena Nawaz, Timme van der Lugt, Neelam Hassanali, Anubha Mahajan, Anders Molven, Sian Ellard, Mark McCarthy, Lise Bjørkhaug, Pål Rasmus Njølstad, Anna L. Gloyn
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0161135

Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science
Cited by: 1
Author(s): Julio Montes-Torres, José Luis Subirats, Nuria Ribelles, Daniel Urda, Leonardo Franco, Emilio Alba, José M. Jerez
Software Mentions: 3
Published: about 9 years ago

10.1002/prot.25094

FF12MC: A revised AMBER forcefield and new protein simulation protocol
Cited by: 34
Author(s): Yuan Ping Pang
Software Mentions: 3
Published: over 9 years ago

10.1038/srep24180

Population Dynamics of Bulking and Foaming Bacteria in a Full-scale Wastewater Treatment Plant over Five Years
Cited by: 21
Author(s): Xiaotao Jiang, Feng Guo, Tong Zhang
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0172141

Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation
Cited by: 11
Author(s): Kelvin Kamfwa, Dongyan Zhao, James D. Kelly, Karen A. Cichy
Software Mentions: 3
Published: over 8 years ago

10.1111/joa.13437

Cortical and trabecular bone structure of the hominoid capitate
Cited by: 12
Author(s): Emma E. Bird, Tracy L. Kivell, Matthew M. Skinner
Software Mentions: 3
Published: over 4 years ago

10.18632/aging.202775

Male-specific age estimation based on Y-chromosomal DNA methylation
Cited by: 11
Author(s): Athina Vidaki, Diego Montiel González, Benjamin Planterose Jiménez, Manfred Kayser
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0192775

Functional characterization and genomic studies of a novel murine submandibular gland epithelial cell line
Cited by: 6
Author(s): Sang‐Won Min, Eun-Ah Christine Song, Akinsola Oyelakin, Christian Gluck, Kirsten Smalley, Rose‐Anne Romano
Software Mentions: 3
Published: over 7 years ago

10.3390/microorganisms9081734

Genome-Resolved Metagenomic Analyses Reveal the Presence of a Putative Bacterial Endosymbiont in an Avian Nasal Mite (Rhinonyssidae; Mesostigmata)
Cited by: 1
Author(s): Carolina Osuna‐Mascaró, Jorge Doña, Kevin P. Johnson, Manuel de Rojas
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-021-83274-1

Preservation of epoxyeicosatrienoic acid bioavailability prevents renal allograft dysfunction and cardiovascular alterations in kidney transplant recipients
Cited by: 4
Author(s): Thomas Duflot, Charlotte Laurent, Anne Soudey, Xavier Fonrose, M. Hamzaoui, Michèle Iacob, Dominique Bertrand, Julie Favre, Isabelle Étienne, Colette Roche, David Coquerel, M. Le Besnerais, Safa Louhichi, Tracy Tarlet, Dongyang Li, V. Brunel, Christophe Morisseau, Vincent Richard, Robinson Joannidès, Françoise Stanke‐Labesque, Fabien Lamoureux, Dominique Guerrot, J. Bellien
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0117439

Effects of the Diet on the Microbiota of the Red Palm Weevil (Coleoptera: Dryophthoridae)
Cited by: 65
Author(s): Matteo Montagna, Bessem Chouaia, Giuseppe Mazza, Erica M. Prosdocimi, Elena Crotti, Valeria Mereghetti, Violetta Vacchini, Annamaria Giorgi, Alessio De Biase, S. Longo, Rita Cervo, G.C. Lozzia, Alberto Alma, Claudio Bandi, Daniele Daffonchio
Software Mentions: 3
Published: almost 11 years ago

10.1186/1471-2105-6-129

Considerations when using the significance analysis of microarrays (SAM) algorithm
Cited by: 110
Author(s): Ola Larsson, Claes Wahlestedt, James A. Timmons
Software Mentions: 3
Published: over 20 years ago

10.3390/antiox9121190

Differential Sex-Dependent Regulation of the Alveolar Macrophage miRNome of SP-A2 and co-ex (SP-A1/SP-A2) and Sex Differences Attenuation after 18 h of Ozone Exposure
Cited by: 7
Author(s): Nithyananda Thorenoor, David S. Phelps, Joanna Floros
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0251827

Multiple spatial reference frames underpin perceptual recalibration to audio-visual discrepancies
Cited by: 8
Author(s): David Watson, Michael A. Akeroyd, Neil W. Roach, Ben S. Webb
Software Mentions: 3
Published: over 4 years ago

10.1093/gbe/evw077

“Every Gene Is Everywhere but the Environment Selects”: Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis
Cited by: 80
Author(s): Marco Fondi, Antti Karkman, Manu Tamminen, Emanuele Bosi, Marko Virta, Renato Fani, Eric J. Alm, James O. McInerney
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0143436

Analysis of Stage-Specific Gene Expression Profiles in the Uterine Endometrium during Pregnancy in Pigs
Cited by: 17
Author(s): Mingoo Kim, Heewon Seo, Yohan Choi, Inkyu Yoo, Minseok Seo, Chang Kyu Lee, Heebal Kim, Hakhyun Ka
Software Mentions: 3
Published: almost 10 years ago

10.1186/s13059-019-1923-9

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
Cited by: 52
Author(s): Serena Manara, Francesco Asnicar, Francesco Beghini, Davide Bazzani, Fabio Cumbo, Moreno Zolfo, Eleonora Nigro, Nicolai Karcher, Paolo Manghi, Marisa Isabell Metzger, Edoardo Pasolli, Nicola Segata
Software Mentions: 3
Published: almost 6 years ago

10.1186/s13059-014-0414-2

Discovery of novel transcripts and gametophytic functions via RNA-seq analysis of maize gametophytic transcriptomes
Cited by: 67
Author(s): Antony M. Chettoor, Scott A. Givan, Rex A. Cole, Clayton T Coker, Erica Unger-Wallace, Zuzana Vejlupkova, Erik Vollbrecht, John E. Fowler, Evans Mulenga
Software Mentions: 3
Published: over 11 years ago

Projects: pypi: package

Science Score: 65/100

Penalties:

Papers Mentioning package 1,300