pypi: package | Projects | Ecosyste.ms: Papers

10.1186/s12870-021-02980-0

Genetic diversity structure of western-type carrots
Cited by: 7
Author(s): Katarzyna Stelmach, Alicja Macko-Podgórni, Charlotte J. Allender, Dariusz Grzebelus
Software Mentions: 4
Published: over 5 years ago

10.1111/tgis.12456

Compactly representing massive terrain models as TINs in CityGML
Cited by: 9
Author(s): Kavisha Kumar, Hugo Ledoux, J.E. Stoter
Software Mentions: 4
Published: about 8 years ago

10.3389/fmicb.2014.00752

Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage
Cited by: 58
Author(s): BjÃ¶rn Breidenbach, Ralf Conrad
Software Mentions: 4
Published: almost 12 years ago

10.3390/cancers13040851

Network Analysis Identifies Drug Targets and Small Molecules to Modulate Apoptosis Resistant Cancers
Cited by: 6
Author(s): Samreen Fathima, Swati Sinha, Sainitin Donakonda
Software Mentions: 4
Published: over 5 years ago

10.1038/bcj.2016.77

lncRNA profiling in early-stage chronic lymphocytic leukemia identifies transcriptional fingerprints with relevance in clinical outcome
Cited by: 40
Author(s): Domenica Ronchetti, Martina Manzoni, Luca Agnelli, Cristina Vinci, Sonia Fabris, Giovanna Cutrona, Serena Matis, Monica Colombo, S. Galletti, Elisa Taìana, Anna Grazia Recchia, Sabrina Bossio, Massimo Gentile, Caterina Musolino, Francesco Di Raimondo, Andrea Grilli, Silvio Bicciato, Agostino Cortelezzi, Pierfrancesco Tassone, Fortunato Morabito, Manlio Ferrarini, Antonino Neri
Software Mentions: 4
Published: about 10 years ago

10.3389/fgene.2019.00439

Whole-Exome Sequencing Identifies Somatic Mutations Associated With Mortality in Metastatic Clear Cell Kidney Carcinoma
Cited by: 17
Author(s): Alejandro Mendoza-Álvarez, Beatriz Guillén‐Guío, Adrian Baez‐Ortega, Carolina Hernandez-Perez, Sita Lakhwani-Lakhwani, María-del-Carmen Maeso, José M. Lorenzo-Salazar, Manuel Morales, Carlos Flores
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2407-14-977

Identification of a candidate prognostic gene signature by transcriptome analysis of matched pre- and post-treatment prostatic biopsies from patients with advanced prostate cancer
Cited by: 41
Author(s): Prabhakar Rajan, Jacqueline Stockley, Ian Sudbery, Janis Fleming, Ann Hedley, Gabriela Kalna, David Sims, Chris P. Ponting, Andreas Heger, Craig Robson, R. McMenemin, Ian Pedley, Hing Y. Leung
Software Mentions: 4
Published: almost 12 years ago

10.7717/peerj.8421

Glycerophosphodiester phosphodiesterase 1 (GDE1) acts as a potential tumor suppressor and is a novel therapeutic target for non-mucin-producing colon adenocarcinoma
Cited by: 2
Author(s): Shen Qiu, Chen Lü, Hua Yang, Ming-Xia Ge, Wangxiao Xia, Qing‐Peng Kong, Gong‐Hua Li, Yanhong Gu
Software Mentions: 4
Published: over 6 years ago

10.1002/advs.201903438

Medical Gas Plasma Jet Technology Targets Murine Melanoma in an Immunogenic Fashion
Cited by: 75
Author(s): Sander Bekeschus, Ramona Clemen, Felix Nießner, Sanjeev Kumar Sagwal, Eric Freund, Anke Schmidt
Software Mentions: 4
Published: over 6 years ago

10.3390/cancers13174483

Prognostic and Therapeutic Potential of the OIP5 Network in Papillary Renal Cell Carcinoma
Cited by: 6
Author(s): Mathilda Jing Chow, Yan Gu, Lizhi He, Xiaozeng Lin, Ying Dong, Wenjuan Mei, Anil Kapoor, Damu Tang
Software Mentions: 4
Published: about 5 years ago

10.3389/fmicb.2020.01686

Soil Fungal Communities Investigated by Metabarcoding Within Simulated Forensic Burial Contexts
Cited by: 11
Author(s): Noemi Procopio, Stefano Ghignone, Samuele Voyron, Marco Chiapello, Anna Williams, Andrew Chamberlain, Antonietta Mello, Michael Buckley
Software Mentions: 4
Published: about 6 years ago

10.1186/s12915-020-00775-7

Parkinson’s disease-associated alterations of the gut microbiome predict disease-relevant changes in metabolic functions
Cited by: 114
Author(s): Federico Baldini, Johannes Hertel, Estelle Sandt, Cyrille C. Thinnes, Lorieza Neuberger-Castillo, Lukas Pavelka, Fay Betsou, Rejko Krüger, Ines Thiele
Software Mentions: 4
Published: over 6 years ago

10.1186/s12915-017-0352-z

The landscape of sex-differential transcriptome and its consequent selection in human adults
Cited by: 180
Author(s): Moran Gershoni, Shmuel Pietrokovski
Software Mentions: 4
Published: over 9 years ago

10.3389/fgene.2021.634554

Molecular Mapping of Water-Stress Responsive Genomic Loci in Lettuce (Lactuca spp.) Using Kinetics Chlorophyll Fluorescence, Hyperspectral Imaging and Machine Learning
Cited by: 9
Author(s): Pawan Kumar, Renée L. Eriksen, Ivan Šimko, Beiquan Mou
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers7040887

Meta-Analysis of DNA Tumor-Viral Integration Site Selection Indicates a Role for Repeats, Gene Expression and Epigenetics
Cited by: 27
Author(s): Janet Doolittle-Hall, Danielle L. Cunningham Glasspoole, William T. Seaman, Jennifer Webster‐Cyriaque
Software Mentions: 4
Published: almost 11 years ago

10.3390/cancers13051109

Bacterial, Archaea, and Viral Transcripts (BAVT) Expression in Gynecological Cancers and Correlation with Regulatory Regions of the Genome
Cited by: 6
Author(s): Jesús González Bosquet, Silvana Pedra-Nobre, Eric J. Devor, Kristina W. Thiel, Michael J. Goodheart, David Bender, Kimberly K. Leslie
Software Mentions: 4
Published: over 5 years ago

10.4049/jimmunol.1602033

Integration of Kinase and Calcium Signaling at the Level of Chromatin Underlies Inducible Gene Activation in T Cells
Cited by: 45
Author(s): Ruth Brignall, Pierre Cauchy, Sarah L Bevington, Bethany Gorman, Angela Oliveira Pisco, James Bagnall, Christopher Boddington, William Rowe, Hazel England, Kevin Rich, Lorraine Schmidt, Nigel P. Dyer, Mark A. Travis, Sascha Ott, Dean A. Jackson, Peter N. Cockerill, Pawel Paszek
Software Mentions: 4
Published: almost 9 years ago

10.1084/jem.20190730

Single-cell profiling reveals an endothelium-mediated immunomodulatory pathway in the eye choroid
Cited by: 47
Author(s): Guillermo L. Lehmann, Christin Hanke-Gogokhia, Yang Hu, Rohan Bareja, Zelda Salfati, Michael Ginsberg, Daniel J. Nolan, Santiago P. Méndez-Huergo, Tomás Dalotto-Moreno, Alexandre Wojcinski, Francisca Ochoa, Siyuan Zeng, Juan P. Cerliani, Lampros Panagis, Patrick J. Zager, Robert F. Mullins, Shuntaro Ogura, Gerard A. Lutty, Jakyung Bang, Jonathan H. Zippin, Carmelo Romano, Gabriel A. Rabinovich, Olivier Elemento, Alexandra L. Joyner, Shahin Rafii, Enrique Rodríguez-Boulan, Ignacio Benedicto
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0187625

RNA-Seq analysis reveals insight into enhanced rice Xa7-mediated bacterial blight resistance at high temperature
Cited by: 46
Author(s): Stephen P. Cohen, Hongxia Liu, Cristiana T. Argueso, Andy Pereira, Casiana Vera Cruz, Valérie Verdier, Jan E. Leach
Software Mentions: 4
Published: almost 9 years ago

10.1186/s12915-019-0626-8

Transcriptome, proteome and draft genome of Euglena gracilis
Cited by: 88
Author(s): ThankGod Echezona Ebenezer, Martin Zoltner, Alana Burrell, Anna Nenarokova, Anna M. G. Novák Vanclová, Binod Prasad, Petr Soukal, Carlos Santana-Molina, Ellis C. O’Neill, Nerissa N. Nankissoor, Nithya Vadakedath, Viktor Daiker, Samson O. Obado, Sara Silva Pereira, Andrew P. Jackson, Damien P. Devos, Julius Lukeš, Michael Lebert, Sue Vaughan, Vladimı́r Hampl, Mark Carrington, Michael L. Ginger, Joel B. Dacks, Steven L. Kelly, Mark C. Field
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0122143

Integrative Analysis of Normal Long Intergenic Non-Coding RNAs in Prostate Cancer
Cited by: 27
Author(s): Pushpinder Bawa, Sajna Zackaria, Mohit Verma, Saurabh Gupta, Srivatsan Raghunathan, Bibha Chaudhary, Subhashini Srinivasan
Software Mentions: 4
Published: over 11 years ago

10.3390/ijerph17114047

Short-Term Effects of Ambient Ozone, PM2.5, and Meteorological Factors on COVID-19 Confirmed Cases and Deaths in Queens, New York
Cited by: 146
Author(s): Atin Adhikari, Jingjing Yin
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2021.644838

High Resolution Haplotype Analyses of Classical HLA Genes in Families With Multiple Sclerosis Highlights the Role of HLA-DP Alleles in Disease Susceptibility
Cited by: 4
Author(s): Kazutoyo Osoegawa, Lisa E. Creary, Gonzalo Montero-Martín, Kalyan C. Mallempati, Sridevi Gangavarapu, Stacy J. Caillier, Adam Santaniello, Noriko Isobe, Jill A. Hollenbach, Stephen L. Hauser, Jorge R. Oksenberg, Marcelo Fernández-Viña
Software Mentions: 4
Published: over 5 years ago

10.3390/s140815348

Intra-and-Inter Species Biomass Prediction in a Plantation Forest: Testing the Utility of High Spatial Resolution Spaceborne Multispectral RapidEye Sensor and Advanced Machine Learning Algorithms
Cited by: 104
Author(s): Timothy Dube, Onisimo Mutanga, Elhadi Adam, Riyad Ismail
Software Mentions: 4
Published: about 12 years ago

10.3390/microorganisms8122043

Identification of Nitrogen Fixation Genes in Lactococcus Isolated from Maize Using Population Genomics and Machine Learning
Cited by: 10
Author(s): Shawn M. Higdon, Bihua C. Huang, A. B. Bennett, Bart C. Weimer
Software Mentions: 4
Published: almost 6 years ago

10.1186/1471-2105-13-S10-S7

A systematic comparison of genome-scale clustering algorithms
Cited by: 45
Author(s): Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston
Software Mentions: 4
Published: over 14 years ago

10.1038/s41598-021-86406-9

Extreme philopatry and genetic diversification at unprecedented scales in a seabird
Cited by: 6
Author(s): D. K. Danckwerts, Laurence Humeau, Patrick Pinet, Christopher D. McQuaid, Matthieu Le Corre
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2105-7-176

The Gaggle: An open-source software system for integrating bioinformatics software and data sources
Cited by: 149
Author(s): Paul Shannon, David J Reiss, Richard Bonneau, Nitin S. Baliga
Software Mentions: 4
Published: over 20 years ago

10.1038/s41598-020-77063-5

Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance
Cited by: 18
Author(s): Alexandre Hild Aono, Everardo Andrade da Costa, Hugo Vianna Silva Rody, James Shiniti Nagai, Ricardo José Gonzaga Pimenta, Melina Cristina Mancini, Fernanda Raquel Camilo dos Santos, Luciana Rossini Pinto, Marcos Guimarães de Andrade Landell, Anete Pereira de Souza, Reginaldo Massanobu Kuroshu
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-021-91625-1

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19
Cited by: 24
Author(s): Brian Le, Gaia Andreoletti, Tomiko Oskotsky, Albert Vallejo-Gracia, Romel Rosales, Katharine Yu, Idit Kosti, Kristoffer E. Leon, Daniel Bunis, Christine Li, G. Renuka Kumar, Kris M. White, Adolfo Garcı́a-Sastre, Mélanie Ott, Marina Sirota
Software Mentions: 4
Published: over 5 years ago

10.1136/ard.2008.096172

Is the blood B-cell subset profile diagnostic for Sjögren syndrome?
Cited by: 72
Author(s): Aymeric Binard, Laëtitia Le Pottier, Valérie Devauchelle‐Pensec, Alain Saraux, Pierre Youinou, Jacques‐Olivier Pers
Software Mentions: 4
Published: about 18 years ago

10.1186/s12864-019-6021-6

Transcriptomics analysis revealing candidate genes and networks for sex differentiation of yesso scallop (Patinopecten yessoensis)
Cited by: 17
Author(s): Liqing Zhou, Zhihong Liu, Yan Dong, Xiujun Sun, Biao Wu, Tao Yu, Yao Zheng, Aiguo Yang, Qing Zhao, Dan Zhao
Software Mentions: 4
Published: about 7 years ago

10.1186/s13195-020-00598-2

Characterization of the chromatin accessibility in an Alzheimer’s disease (AD) mouse model
Cited by: 24
Author(s): Yaqi Wang, Xiaomin Zhang, Shan Qiao, Yuli Hou, Jing Liu, Yu Sun, Peichang Wang
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-51056-5

Down-regulation of CK2α correlates with decreased expression levels of DNA replication minichromosome maintenance protein complex (MCM) genes
Cited by: 4
Author(s): Susanne Schaefer, Thomas Koed Doktor, Sabrina B Frederiksen, Kathleen Chea, Mirka Hlavacova, Georg M. Bruun, Maj Rabjerg, Brage S. Andresen, Isabel Domı́nguez, Bárbara Guerra
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0169234

Genome-Wide Association Mapping and Genomic Selection for Alfalfa (Medicago sativa) Forage Quality Traits
Cited by: 94
Author(s): Elisa Biazzi, Nelson Espinoza N., L. Pecetti, E. Charles Brummer, Alberto Palmonari, Aldo Tava, Paolo Annicchiarico
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0142707

State-Space Modelling of the Drivers of Movement Behaviour in Sympatric Species
Cited by: 12
Author(s): F. Javier Pérez‐Barbería, Michael Small, R. J. Hooper, A. Aldezábal, Ramón C. Soriguer-Escofet, George S. Bakken, Iain J. Gordon
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0192401

High intra-specific variation in avian body condition responses to climate limits generalisation across species
Cited by: 22
Author(s): Nina McLean, Henk P. van der Jeugd, Martijn van de Pol
Software Mentions: 4
Published: over 8 years ago

10.1186/s12864-019-5667-4

Postovulatory maternal transcriptome in Atlantic salmon and its relation to developmental potential of embryos
Cited by: 8
Author(s): Teshome Tilahun Bizuayehu, Maren Mommens, Arvind Sundaram, Anusha K. S. Dhanasiri, Igor Babiak
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-021-91824-w

Lack of detectable genetic isolation in the cyclic rodent Microtus arvalis despite large landscape fragmentation owing to transportation infrastructures
Cited by: 4
Author(s): Julio Domínguez, María Calero‐Riestra, Pedro P. Olea, Juan E. Malo, Christopher P. Burridge, Kirstin Proft, Sonia Illanas, Javier Viñuela, Jesús T. García
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-020-3465-2

PathME: pathway based multi-modal sparse autoencoders for clustering of patient-level multi-omics data
Cited by: 33
Author(s): Amina Lemsara, Salima Ouadfel, Holger Fröhlich
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0241057

Diversity and structural differences of bacterial microbial communities in rhizocompartments of desert leguminous plants
Cited by: 8
Author(s): Ziyuan Zhou, Minghan Yu, Guodong Ding, Guanglei Gao, Yingying He
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0219981

Pathogen invasion history elucidates contemporary host pathogen dynamics
Cited by: 14
Author(s): Vance T. Vredenburg, Samuel V. G. McNally, Hasan Sulaeman, Helen Butler, Tiffany A. Yap, Michelle S. Koo, Dirk S. Schmeller, Celeste Dodge, Tina L. Cheng, Gordon Lau, Cheryl J. Briggs
Software Mentions: 4
Published: about 7 years ago

10.1186/1471-2164-11-138

Escherichia coli infection induces distinct local and systemic transcriptome responses in the mammary gland
Cited by: 114
Author(s): Simone Mitterhuemer, Wolfram Petzl, Stefan Krebs, Daniel Mehne, Andrea Klanner, Eckhard Wolf, Holm Zerbe, Helmut Blum
Software Mentions: 4
Published: over 16 years ago

10.3758/s13420-017-0260-7

Optimisation of cognitive performance in rodent operant (touchscreen) testing: Evaluation and effects of reinforcer strength
Cited by: 25
Author(s): Benjamin U. Phillips, Christopher Heath, Zofia Ossowska, Timothy J. Bussey, Lisa M. Saksida
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-018-30089-2

Predictive ability of genome-assisted statistical models under various forms of gene action
Cited by: 34
Author(s): Mehdi Momen, Ahmad Ayatollahi Mehrgardi, Ayyub Sheikhi, Andreas Kranis, Llibertat Tusell, Gota Morota, Guilherme J. M. Rosa, Daniel Gianola
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-021-85735-z

The phylogeographic history of Krascheninnikovia reflects the development of dry steppes and semi-deserts in Eurasia
Cited by: 9
Author(s): Anna Seidl, Karin Tremetsberger, Simon Pfanzelt, Frank R. Blattner, Barbara Neuffer, Nikolai Friesen, Herbert Hurka, А. И. Шмаков, Batlai Oyuntsetseg, Anže Žerdoner Čalasan, Polina V. Vesselova, Karl‐Georg Bernhardt
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-021-07416-5

Transcriptome analysis and molecular mechanism of linseed (Linum usitatissimum L.) drought tolerance under repeated drought using single-molecule long-read sequencing
Cited by: 20
Author(s): Wei Wang, Lei Wang, Ling Wang, Mingqian Tan, Collins Ogutu, Ziyan Yin, Jian Zhou, Jiaomei Wang, Lijun Wang, Xin Yan
Software Mentions: 4
Published: over 5 years ago

10.1111/acel.13195

Growth differentiation factor 15 protects against the aging‐mediated systemic inflammatory response in humans and mice
Cited by: 59
Author(s): Ji Sun Moon, Ludger Goeminne, Jung Tae Kim, Jing Tian, Seok Hwan Kim, Ha Thi Nga, Sun Hyung Kang, Baeki E. Kang, Jin Seok Byun, Young‐Sun Lee, Jae‐Han Jeon, Minho Shong, Johan Auwerx, Dongryeol Ryu, Hyon‐Seung Yi
Software Mentions: 4
Published: about 6 years ago

10.1534/g3.119.400336

A Bayesian Genomic Multi-output Regressor Stacking Model for Predicting Multi-trait Multi-environment Plant Breeding Data
Cited by: 20
Author(s): Osval A. Montesinos-L֯ópez, Abelardo Montesinos‐López, J. Crossa, Jaime Cuevas, J. Cricelio Montesinos-López, Zitlalli Salas Gutiérrez, Morten Lillemo, Philomin Juliana, Ravi P. Singh
Software Mentions: 4
Published: about 7 years ago

10.1186/1471-2164-14-523

Systems perspectives on erythromycin biosynthesis by comparative genomic and transcriptomic analyses of S. erythraea E3 and NRRL23338 strains
Cited by: 38
Author(s): Yuanyuan Li, Xiao Chang, Wen-Bang Yu, Hao Li, Zhiqiang Ye, Hui Yu, Baohong Liu, Yan Zhang, Siliang Zhang, Bang‐Ce Ye, Yixue Li
Software Mentions: 4
Published: almost 14 years ago

10.1186/s12862-020-01739-9

Genomic variation in the American pika: signatures of geographic isolation and implications for conservation
Cited by: 4
Author(s): Kelly B. Klingler, Joshua P. Jahner, Thomas L. Parchman, Chris Ray, Mary M. Peacock
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-017-3944-7

Genome-wide signals of positive selection in strongylocentrotid sea urchins
Cited by: 11
Author(s): Kord M. Kober, Grant H. Pogson
Software Mentions: 4
Published: about 9 years ago

10.1111/tpj.14299

Hybrid sequencing reveals insight into heat sensing and signaling of bread wheat
Cited by: 46
Author(s): Xiaoming Wang, Siyuan Chen, Song Xue, Danni Liu, Peng Zhao, Yunze Lu, Yanbing Cheng, Zhenshan Liu, Xiaojun Nie, Weining Song, Qixin Sun, Shengbao Xu, Chuang Ma
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-019-49446-w

De novo transcriptome provides insights into the growth behaviour and resveratrol and trans-stilbenes biosynthesis in Dactylorhiza hatagirea - An endangered alpine terrestrial orchid of western Himalaya
Cited by: 19
Author(s): Nisha Dhiman, Nitesh Kumar Sharma, Pooja Thapa, Isha Sharma, Mohit Kumar Swarnkar, Amit Chawla, Ravi Shankar, Amita Bhattacharya
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-021-93552-7

Electrophysiological characterization of a diverse group of sugar transporters from Trichoderma reesei
Cited by: 7
Author(s): Sami Havukainen, Jonai Pujol‐Giménez, Mari Valkonen, Ann Westerholm-Parvinen, Matthias A. Hediger, Christopher P. Landowski
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms8111679

Comparative Genomics of Pathogenic Clavibacter michiganensis subsp. michiganensis Strains from Chile Reveals Potential Virulence Features for Tomato Plants
Cited by: 13
Author(s): Valentina Méndez, Matías A. Valenzuela, Francisco Salvà‐Serra, Daniel Jaén‐Luchoro, Ximena Besoaín, Edward R. B. Moore, Michael Seeger
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41408-020-0320-7

“Direct to Drug” screening as a precision medicine tool in multiple myeloma
Cited by: 18
Author(s): Cecília Bonolo de Campos, Nathalie Meurice, Joachim Petit, Alysia Polito, Yuan Xiao Zhu, Panwen Wang, Laura A. Bruins, Xuewei Wang, Ilsel D Lopez Armenta, Susie A. Darvish, Greg Ahmann, Kimberly J. Henderson, Shulan Tian, Jonas Kruse, William Stewart, Jeremy T. Larsen, Craig B. Reeder, David Dingli, Prashant Kapoor, Shaji Kumar, Rafaël Fonseca, P. Leif Bergsagel, Esteban Braggio, A. Keith Stewart
Software Mentions: 3
Published: over 6 years ago

10.3389/fpls.2016.01229

Differential Network Analysis Reveals Evolutionary Complexity in Secondary Metabolism of Rauvolfia serpentina over Catharanthus roseus
Cited by: 13
Author(s): Shivalika Pathania, Ganesh Bagler, Paramvir Singh Ahuja
Software Mentions: 3
Published: about 10 years ago

10.1002/bit.26891

Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture
Cited by: 35
Author(s): Inmaculada Hernández, Heena Dhiman, Gerald Klanert, Vaibhav Jadhav, Norbert Auer, Michael Hanscho, Martina Baumann, Anna Esteve‐Codina, Marc Dabad, Jessica Gómez, Tyler Alioto, Angelika Merkel, Emanuele Raineri, Simon Heath, Daniel Rico, Nicole Borth
Software Mentions: 3
Published: almost 8 years ago

10.3389/fpls.2021.654676

Transcriptome Analysis and RNA Interference Reveal GhGDH2 Regulating Cotton Resistance to Verticillium Wilt by JA and SA Signaling Pathways
Cited by: 14
Author(s): Xingjiang Xiong, Shichao Sun, Qian Zhu, Xinyu Zhang, Feng Liu, Yanjun Li, Fei Xue
Software Mentions: 3
Published: over 5 years ago

10.3390/biom11030458

A Molecular Modeling Approach to Identify Potential Antileishmanial Compounds Against the Cell Division Cycle (cdc)-2-Related Kinase 12 (CRK12) Receptor of Leishmania donovani
Cited by: 18
Author(s): Emmanuel Broni, Samuel K. Kwofie, Seth O. Asiedu, Whelton A. Miller, Michael D. Wilson
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2105-11-315

μ-CS: An extension of the TM4 platform to manage Affymetrix binary data
Cited by: 43
Author(s): Pietro Hiram Guzzi, Mario Cannataro
Software Mentions: 3
Published: over 16 years ago

10.1186/1471-2164-10-202

Distinct patterns of gene and protein expression elicited by organophosphorus pesticides in Caenorhabditis elegans
Cited by: 43
Author(s): John A. Lewis, M. Szilágyi, Elizabeth Gehman, William E. Dennis, David A. Jackson
Software Mentions: 3
Published: almost 18 years ago

10.1155/2020/7510120

Identification of Prognostic Immune Genes in Bladder Urothelial Carcinoma
Cited by: 2
Author(s): Qingde Su, Yan Sun, Zunni Zhang, Zheng Yang, Yuling Qiu, Xiaohong Li, Wuning Mo
Software Mentions: 3
Published: over 6 years ago

10.1155/2015/690873

Bioinformatics Methods and Biological Interpretation for Next-Generation Sequencing Data
Cited by: 7
Author(s): Guohua Wang, Yunlong Liu, Dongxiao Zhu, Gunnar W. Klau, Weixing Feng
Software Mentions: 3
Published: almost 12 years ago

10.3389/fpls.2017.01585

HvPap-1 C1A Protease Participates Differentially in the Barley Response to a Pathogen and an Herbivore
Cited by: 11
Author(s): Mercedes Díaz-Mendoza, Blanca Velasco-Arroyo, M. Estrella Santamaría, Isabel Dı́az, Manuel Martínez
Software Mentions: 3
Published: about 9 years ago

10.3389/fphys.2020.576797

Physiological Tradeoffs of Immune Response Differs by Infection Type in Pieris napi
Cited by: 2
Author(s): Naomi Keehnen, Lucie Kučerová, Sören Nylin, Ulrich Theopold, Christopher W. Wheat
Software Mentions: 3
Published: over 5 years ago

10.3390/biology9100315

Phenotypic Responses, Reproduction Mode and Epigenetic Patterns under Temperature Treatments in the Alpine Plant Species Ranunculus kuepferi (Ranunculaceae)
Cited by: 9
Author(s): Eleni Syngelaki, Mareike Daubert, Simone Klatt, Elvira Hörandl
Software Mentions: 3
Published: about 6 years ago

10.1186/s12859-016-0885-0

Deciphering transcriptional regulations coordinating the response to environmental changes
Cited by: 1
Author(s): Vicente Acuña, Andrés Aravena, Carito Guziołowski, Damien Eveillard, Anne Siegel, Alejandro Maass
Software Mentions: 3
Published: over 10 years ago

10.1186/1471-230X-10-60

The Role of T cell PPAR γ in mice with experimental inflammatory bowel disease
Cited by: 68
Author(s): Amir J. Guri, Saroj Kant Mohapatra, William Horne, Raquel Hontecillas, Josep Bassaganya‐Riera
Software Mentions: 3
Published: over 16 years ago

10.3389/fonc.2019.01144

Quantitative Spatial Analysis of Metabolic Heterogeneity Across in vivo and in vitro Tumor Models
Cited by: 18
Author(s): Tiffany M. Heaster, Bennett A. Landman, Melissa C. Skala
Software Mentions: 3
Published: almost 7 years ago

10.1098/rsbl.2016.0432

Behavioural adaptations to flight into thin air
Cited by: 22
Author(s): Sherub Sherub, Gil Bohrer, Martin Wikelski, Rolf Weinzierl
Software Mentions: 3
Published: about 10 years ago

10.3390/ani10111943

Efficacy of Oxyclozanide and Closantel against Rumen Flukes (Paramphistomidae) in Naturally Infected Sheep
Cited by: 7
Author(s): David García-Dios, Pablo Díaz, M. Viña, Susana Remesar, Alberto Prieto, Gonzalo López-Lorenzo, José Manuel Díaz Cao, Rosario Panadero Fontán, P. Díez‐Baños, C. López
Software Mentions: 3
Published: almost 6 years ago

10.3389/fonc.2021.705384

Wnt/β-Catenin Inhibition Disrupts Carboplatin Resistance in Isogenic Models of Triple-Negative Breast Cancer
Cited by: 16
Author(s): Willy Antoni Abreu de Oliveira, Stijn Moens, Youssef El Laithy, Bernard K. van der Veer, Paraskevi Athanasouli, Emanuela Elsa Cortesi, Maria Francesca Baietti, Kian Peng Koh, Juan-José Ventura, Frédéric Amant, Daniela Annibali, Frederic Lluı́s
Software Mentions: 3
Published: about 5 years ago

10.1186/1756-0381-2-3

Partitioning clustering algorithms for protein sequence data sets
Cited by: 17
Author(s): Sondès Fayech, Nadia Essoussi, Mohamed Limam
Software Mentions: 3
Published: over 17 years ago

10.3389/fpls.2021.666342

Sorghum Pan-Genome Explores the Functional Utility for Genomic-Assisted Breeding to Accelerate the Genetic Gain
Cited by: 36
Author(s): Pradeep Ruperao, Nepolean Thirunavukkarasu, Prasad Gandham, Sivasubramani Selvanayagam, Mahalingam Govindaraj, Baloua Nebié, Eric Manyasa, Rajeev Gupta, Roma Rani Das, Damaris Achieng Odeny, Harish Gandhi, David Edwards, Santosh Deshpande, Abhishek Rathore
Software Mentions: 3
Published: over 5 years ago

10.1101/2020.08.22.262931

Theoretical basis for stabilizing messenger RNA through secondary structure design
Cited by: 16
Author(s): Hannah K. Wayment-Steele, Do Soon Kim, Christian A. Choe, John J Nicol, Roger Wellington-Oguri, Andrew Watkins, R Andres Parra Sperberg, Po-Ssu Huang, Eterna Participants, Rhiju Das
Software Mentions: 3
Published: about 6 years ago

10.1186/1472-6874-12-9

Treatment of endometriosis in different ethnic populations: a meta-analysis of two clinical trials
Cited by: 28
Author(s): Christoph Gerlinger, Thomas Faustmann, Jeffrey J Hassall, Christian Seitz
Software Mentions: 3
Published: over 14 years ago

10.1186/s12863-016-0363-8

Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants
Cited by: 66
Author(s): Terhi Iso-Touru, Goutam Sahana, Bernt Guldbrandtsen, Mogens Sandø Lund, Johanna Vilkki
Software Mentions: 3
Published: over 10 years ago

10.1186/s13104-021-05729-y

XPolaris: an R-package to retrieve United States soil data at 30-meter resolution
Cited by: 3
Author(s): Luiz H. Moro Rosso, André Fróes de Borja Reis, Adrián A. Correndo, Ignacio A. Ciampitti
Software Mentions: 3
Published: about 5 years ago

10.1186/1472-6785-12-19

Contrasting habitat associations of imperilled endemic stream fishes from a global biodiversity hot spot
Cited by: 18
Author(s): Albert Chakona, Ernst R. Swartz
Software Mentions: 3
Published: almost 15 years ago

10.1186/s12859-016-0975-z

CoeViz: a web-based tool for coevolution analysis of protein residues
Cited by: 39
Author(s): Frazier N. Baker, Aleksey Porollo
Software Mentions: 3
Published: over 10 years ago

10.3389/fmolb.2020.598221

ANTXR1 Is a Prognostic Biomarker and Correlates With Stromal and Immune Cell Infiltration in Gastric Cancer
Cited by: 9
Author(s): Xiaodong Huang, Jie Zhang, Yongbin Zheng
Software Mentions: 3
Published: almost 6 years ago

10.3389/fmicb.2018.02668

Ancestrality and Mosaicism of Giant Viruses Supporting the Definition of the Fourth TRUC of Microbes
Cited by: 41
Author(s): Philippe Colson, Anthony Levasseur, Bernard La Scola, Vikas Sharma, Arshan Nasir, Pierre Pontarotti, Gustavo Caetano‐Anollés, Didier Raoult
Software Mentions: 3
Published: almost 8 years ago

10.3390/ph14010041

Modulation of the Immune Response by Deferasirox in Myelodysplastic Syndrome Patients
Cited by: 4
Author(s): Hana Votavová, Zuzana Urbanová, David Kundrát, Michaela Dostálová Merkerová, Martin Vostrý, Monika Hruba, Jaroslav Čermák, Monika Beličková
Software Mentions: 3
Published: almost 6 years ago

10.7717/peerj.7366

Asexual reproduction of a few genotypes favored the invasion of the cereal aphid<i>Rhopalosiphum padi</i>in Chile
Cited by: 4
Author(s): María E Rubio-Meléndez, Joceline Barrios-Sanmartín, Felipe E. Pina-Castro, Christian C. Figueroa, C. Ramı́rez
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2017.01595

The Geographic Distribution of Saccharomyces cerevisiae Isolates within three Italian Neighboring Winemaking Regions Reveals Strong Differences in Yeast Abundance, Genetic Diversity and Industrial Strain Dissemination
Cited by: 24
Author(s): Alessia Viel, Jean Luc Legras, Chiara Nadai, Milena Carlot, Angiolella Lombardi, Manna Crespan, Daniele Migliaro, Alessio Giacomini
Software Mentions: 3
Published: about 9 years ago

10.7717/peerj.8683

Patterns of change in α and β taxonomic and phylogenetic diversity in the secondary succession of semi-natural grasslands in the Northern Apennines
Cited by: 6
Author(s): Lorenzo Lazzaro, Lorenzo Lastrucci, Daniele Viciani, Renato Benesperi, Vincenzo Gonnelli, Andrea Coppi
Software Mentions: 3
Published: over 6 years ago

10.3389/fimmu.2019.01960

Differential Impact of Co-expressed SP-A1/SP-A2 Protein on AM miRNome; Sex Differences
Cited by: 16
Author(s): Nithyananda Thorenoor, Yuka Imamura Kawasawa, Chintan K. Gandhi, Xuesheng Zhang, Joanna Floros
Software Mentions: 3
Published: about 7 years ago

10.3389/fgene.2021.657051

Identification and Validation of an Immune-Related eRNA Prognostic Signature for Hepatocellular Carcinoma
Cited by: 10
Author(s): Shenglan Cai, Xingwang Hu, Ruochan Chen, Yiya Zhang
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2021.667038

Genome-Wide Association Study Reveals Candidate Genes for Flowering Time in Cowpea (Vigna unguiculata [L.] Walp.)
Cited by: 15
Author(s): Dev Paudel, Rocheteau Dareus, Julia Rosenwald, María Muñoz‐Amatriaín, Esteban F. Rios
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2018.00066

The Dangers of Being a Small, Oligotrophic and Light Demanding Freshwater Plant across a Spatial and Historical Eutrophication Gradient in Southern Scandinavia
Cited by: 13
Author(s): Kaj Sand‐Jensen, Hans Henrik Bruun, Tora Finderup Nielsen, Ditte Marie Christiansen, Per Hartvig, Jens Chr. Schou, Lars Baastrup‐Spohr
Software Mentions: 3
Published: over 8 years ago

10.3389/fgene.2020.00429

Construction and Validation of a 13-Gene Signature for Prognosis Prediction in Medulloblastoma
Cited by: 3
Author(s): L. Chang, Han Zou, Zujian Xiong, Yi Xiong, Danielle F Miyagishima, Siyi Wanggou, Xuejun Li
Software Mentions: 3
Published: over 6 years ago

10.3389/fimmu.2021.724741

NPM1 Is a Prognostic Biomarker Involved in Immune Infiltration of Lung Adenocarcinoma and Associated With m6A Modification and Glycolysis
Cited by: 37
Author(s): Xusheng Liu, Lu-Meng Zhou, Lingling Yuan, Yan Gao, Xue-Yan Kui, Xiaoyu Liu, Zhijun Pei
Software Mentions: 3
Published: about 5 years ago

10.3758/s13414-015-0860-2

The long and the short of priming in visual search
Cited by: 24
Author(s): Wouter Kruijne, Martijn Meeter
Software Mentions: 3
Published: over 11 years ago

10.1186/1756-3305-6-359

Bayesian geostatistical modelling of soil-transmitted helminth survey data in the People’s Republic of China
Cited by: 49
Author(s): Ying-Si Lai, Xiao‐Nong Zhou, Jürg Utzinger, Penelope Vounatsou
Software Mentions: 3
Published: almost 13 years ago

10.3390/cells9010165

In Silico Analysis of the Age-Dependent Evolution of the Transcriptome of Mouse Skin Stem Cells
Cited by: 4
Author(s): L. Francisco Lorenzo‐Martín, Xosé R. Bustelo
Software Mentions: 3
Published: almost 7 years ago

10.3390/v10040192

Full Genome Sequencing Reveals New Southern African Territories Genotypes Bringing Us Closer to Understanding True Variability of Foot-and-Mouth Disease Virus in Africa
Cited by: 22
Author(s): Lidia Lasecka-Dykes, Caroline F. Wright, Antonello Di Nardo, Greg Logan, Valérie Mioulet, Terry Jackson, Tobias J. Tuthill, Nick J. Knowles, Donald P. King
Software Mentions: 3
Published: over 8 years ago

10.1186/1471-2229-13-122

P-TRAP: a Panicle Trait Phenotyping tool
Cited by: 66
Author(s): Faroq Al-Tam, Hélène Adam, António dos Anjos, Mathias Lorieux, Pierre Larmande, Alain Ghesquière, Stéfan Jouannic, Hamid Reza Shahbazkia
Software Mentions: 3
Published: about 13 years ago

10.1186/s12985-019-1253-2

HPV viral load in self-collected vaginal fluid samples as predictor for presence of cervical intraepithelial neoplasia
Cited by: 10
Author(s): Malin Berggrund, Inger Gustavsson, Riina Aarnio, Julia Hedlund-Lindberg, Karin Sanner, Ingrid Wikström, Stefan Enroth, Matts Olovsson, Ulf Gyllensten
Software Mentions: 3
Published: almost 7 years ago

Projects: pypi: package

Science Score: 65/100

Penalties:

Papers Mentioning package 1,300