pypi: package | Projects | Ecosyste.ms: Papers

10.1186/1471-2105-15-246

Rapid screening for phenotype-genotype associations by linear transformations of genomic evaluations
Cited by: 55
Author(s): José Luis Gualdrón Duarte, Rodolfo Juan Carlos Cantet, R. O. Bates, Catherine W. Ernst, Nancy E. Raney, Juan P. Steibel
Software Mentions: 4
Published: about 12 years ago

10.1186/s12884-020-03150-0

Spiral artery blood flow during pregnancy: a systematic review and meta-analysis
Cited by: 6
Author(s): V. Schiffer, Laura Evers, Sander de Haas, Chahinda Ghossein‐Doha, Salwan Al‐Nasiry, Marc E. A. Spaanderman
Software Mentions: 4
Published: almost 6 years ago

10.1002/ece3.7526

Habitat fragmentation and vegetation structure impact gastrointestinal parasites of small mammalian hosts in Madagascar
Cited by: 7
Author(s): Frederik Kiene, Bertrand Andriatsitohaina, Malcolm S. Ramsay, Romule Rakotondravony, Christina Strübe, Ute Radespiel
Software Mentions: 4
Published: over 5 years ago

10.1186/s12862-020-01739-9

Genomic variation in the American pika: signatures of geographic isolation and implications for conservation
Cited by: 4
Author(s): Kelly B. Klingler, Joshua P. Jahner, Thomas L. Parchman, Chris Ray, Mary M. Peacock
Software Mentions: 4
Published: over 5 years ago

10.15252/emmm.201708202

A proteomic network approach across the <scp>ALS</scp> ‐ <scp>FTD</scp> disease spectrum resolves clinical phenotypes and genetic vulnerability in human brain
Cited by: 115
Author(s): Mfon Umoh, Eric B. Dammer, Jingting Dai, Duc M. Duong, James J. Lah, Aĺlan I. Levey, Marla Gearing, Jonathan D. Glass, Nicholas T. Seyfried
Software Mentions: 4
Published: over 8 years ago

10.7717/peerj.8421

Glycerophosphodiester phosphodiesterase 1 (GDE1) acts as a potential tumor suppressor and is a novel therapeutic target for non-mucin-producing colon adenocarcinoma
Cited by: 2
Author(s): Shen Qiu, Chen Lü, Hua Yang, Ming-Xia Ge, Wangxiao Xia, Qing‐Peng Kong, Gong‐Hua Li, Yanhong Gu
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-019-51056-5

Down-regulation of CK2α correlates with decreased expression levels of DNA replication minichromosome maintenance protein complex (MCM) genes
Cited by: 4
Author(s): Susanne Schaefer, Thomas Koed Doktor, Sabrina B Frederiksen, Kathleen Chea, Mirka Hlavacova, Georg M. Bruun, Maj Rabjerg, Brage S. Andresen, Isabel Domı́nguez, Bárbara Guerra
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-77063-5

Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance
Cited by: 18
Author(s): Alexandre Hild Aono, Everardo Andrade da Costa, Hugo Vianna Silva Rody, James Shiniti Nagai, Ricardo José Gonzaga Pimenta, Melina Cristina Mancini, Fernanda Raquel Camilo dos Santos, Luciana Rossini Pinto, Marcos Guimarães de Andrade Landell, Anete Pereira de Souza, Reginaldo Massanobu Kuroshu
Software Mentions: 4
Published: almost 6 years ago

10.1186/1471-2164-14-523

Systems perspectives on erythromycin biosynthesis by comparative genomic and transcriptomic analyses of S. erythraea E3 and NRRL23338 strains
Cited by: 38
Author(s): Yuanyuan Li, Xiao Chang, Wen-Bang Yu, Hao Li, Zhiqiang Ye, Hui Yu, Baohong Liu, Yan Zhang, Siliang Zhang, Bang‐Ce Ye, Yixue Li
Software Mentions: 4
Published: over 13 years ago

10.1002/advs.201903438

Medical Gas Plasma Jet Technology Targets Murine Melanoma in an Immunogenic Fashion
Cited by: 75
Author(s): Sander Bekeschus, Ramona Clemen, Felix Nießner, Sanjeev Kumar Sagwal, Eric Freund, Anke Schmidt
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0172829

Small rodents as paratenic or intermediate hosts of carnivore parasites in Berlin, Germany
Cited by: 27
Author(s): Jürgen Krücken, Julia Blümke, Denny Maaz, Janina Demeler, Sabrina Ramünke, Daniela Antolová, Roland Schaper, Georg von Samson‐Himmelstjerna
Software Mentions: 4
Published: over 9 years ago

10.1186/s12915-020-00775-7

Parkinson’s disease-associated alterations of the gut microbiome predict disease-relevant changes in metabolic functions
Cited by: 114
Author(s): Federico Baldini, Johannes Hertel, Estelle Sandt, Cyrille C. Thinnes, Lorieza Neuberger-Castillo, Lukas Pavelka, Fay Betsou, Rejko Krüger, Ines Thiele
Software Mentions: 4
Published: about 6 years ago

10.1038/s42003-020-0804-9

Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease
Cited by: 55
Author(s): Arlin Keo, Ahmed Mahfouz, Angela Ingrassia, Jean Pascal Meneboo, Céline Villenet, Eugénie Mutez, Thomas Comptdaer, Boudewijn P. F. Lelieveldt, Martin Figeac, Marie-Christine Chartier-Harlin, Wilma D. J. van de Berg, Jacobus J. van Hilten, Marcel J. T. Reinders
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0223031

Lipidomics analysis of juveniles’ blue mussels (Mytilus edulis L. 1758), a key economic and ecological species
Cited by: 13
Author(s): Vincenzo Alessandro Laudicella, Christine Beveridge, Stefano Carboni, Sofia C. Franco, Mary K. Doherty, Nina Long, Elaine Mitchell, Michele S. Stanley, Phillip D. Whitfield, Adam D. Hughes
Software Mentions: 4
Published: over 6 years ago

10.1186/2049-1891-3-8

Current status and future perspectives for sequencing livestock genomes
Cited by: 40
Author(s): Yongsheng Bai, Maureen A. Sartor, James D. Cavalcoli
Software Mentions: 4
Published: over 14 years ago

10.1038/s41598-021-93552-7

Electrophysiological characterization of a diverse group of sugar transporters from Trichoderma reesei
Cited by: 7
Author(s): Sami Havukainen, Jonai Pujol‐Giménez, Mari Valkonen, Ann Westerholm-Parvinen, Matthias A. Hediger, Christopher P. Landowski
Software Mentions: 4
Published: about 5 years ago

10.1186/s12915-019-0626-8

Transcriptome, proteome and draft genome of Euglena gracilis
Cited by: 88
Author(s): ThankGod Echezona Ebenezer, Martin Zoltner, Alana Burrell, Anna Nenarokova, Anna M. G. Novák Vanclová, Binod Prasad, Petr Soukal, Carlos Santana-Molina, Ellis C. O’Neill, Nerissa N. Nankissoor, Nithya Vadakedath, Viktor Daiker, Samson O. Obado, Sara Silva Pereira, Andrew P. Jackson, Damien P. Devos, Julius Lukeš, Michael Lebert, Sue Vaughan, Vladimı́r Hampl, Mark Carrington, Michael L. Ginger, Joel B. Dacks, Steven L. Kelly, Mark C. Field
Software Mentions: 4
Published: over 7 years ago

10.1093/gigascience/giy118

Extensive evaluation of the generalized relevance network approach to inferring gene regulatory networks
Cited by: 5
Author(s): Vladimir Kuzmanovski, Ljupčo Todorovski, Sašo Džeroski
Software Mentions: 4
Published: almost 8 years ago

10.1111/1755-0998.13044

Rapid identification and interpretation of gene–environment associations using the new R.SamBada landscape genomics pipeline
Cited by: 15
Author(s): Solange Duruz, Natalia Sevane, Oliver Selmoni, Elia Vajana, Kevin Leempoel, Sylvie Stucki, Pablo Orozco‐terWengel, Estelle Rochat, S. Dunner, Michael William Bruford, Stéphane Joost
Software Mentions: 4
Published: about 7 years ago

10.1186/s13059-019-1918-6

Enteric infection induces Lark-mediated intron retention at the 5′ end of Drosophila genes
Cited by: 4
Author(s): Maroun Bou Sleiman, Michael Frochaux, Tommaso Andreani, Dani Osman, Roderic Guigó, Bart Deplancke
Software Mentions: 4
Published: over 6 years ago

10.3390/microorganisms8122043

Identification of Nitrogen Fixation Genes in Lactococcus Isolated from Maize Using Population Genomics and Machine Learning
Cited by: 10
Author(s): Shawn M. Higdon, Bihua C. Huang, A. B. Bennett, Bart C. Weimer
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2105-13-S10-S7

A systematic comparison of genome-scale clustering algorithms
Cited by: 45
Author(s): Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston
Software Mentions: 4
Published: about 14 years ago

10.1371/journal.pone.0247055

Statistical meta-analysis to investigate the association between the Interleukin-6 (IL-6) gene polymorphisms and cancer risk
Cited by: 16
Author(s): Md. Harun-Or-Roshid, Md. Borqat Ali, Jesmin, Md. Nurul Haque Mollah
Software Mentions: 4
Published: over 5 years ago

10.3390/microorganisms8111679

Comparative Genomics of Pathogenic Clavibacter michiganensis subsp. michiganensis Strains from Chile Reveals Potential Virulence Features for Tomato Plants
Cited by: 13
Author(s): Valentina Méndez, Matías A. Valenzuela, Francisco Salvà‐Serra, Daniel Jaén‐Luchoro, Ximena Besoaín, Edward R. B. Moore, Michael Seeger
Software Mentions: 4
Published: almost 6 years ago

10.1186/1471-2105-7-176

The Gaggle: An open-source software system for integrating bioinformatics software and data sources
Cited by: 149
Author(s): Paul Shannon, David J Reiss, Richard Bonneau, Nitin S. Baliga
Software Mentions: 4
Published: over 20 years ago

10.1186/gb-2011-12-3-r27

A genome-wide view of mutation rate co-variation using multivariate analyses
Cited by: 38
Author(s): Guruprasad Ananda, Francesca Chiaromonte, Kateryna D. Makova
Software Mentions: 4
Published: over 15 years ago

10.1186/s12915-017-0352-z

The landscape of sex-differential transcriptome and its consequent selection in human adults
Cited by: 180
Author(s): Moran Gershoni, Shmuel Pietrokovski
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0180236

An adjustable predictive score of graft survival in kidney transplant patients and the levels of risk linked to de novo donor-specific anti-HLA antibodies
Cited by: 14
Author(s): Aurélie Prémaud, Matthieu Filloux, Philippe Gatault, Antoine Thierry, Matthias Büchler, E Munteanu, Pierre Marquet, Marie Essig, Annick Rousseau
Software Mentions: 4
Published: about 9 years ago

10.1136/ard.2008.096172

Is the blood B-cell subset profile diagnostic for Sjögren syndrome?
Cited by: 72
Author(s): Aymeric Binard, Laëtitia Le Pottier, Valérie Devauchelle‐Pensec, Alain Saraux, Pierre Youinou, Jacques‐Olivier Pers
Software Mentions: 4
Published: almost 18 years ago

10.1186/s12864-019-6021-6

Transcriptomics analysis revealing candidate genes and networks for sex differentiation of yesso scallop (Patinopecten yessoensis)
Cited by: 17
Author(s): Liqing Zhou, Zhihong Liu, Yan Dong, Xiujun Sun, Biao Wu, Tao Yu, Yao Zheng, Aiguo Yang, Qing Zhao, Dan Zhao
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pntd.0005568

Detecting the impact of temperature on transmission of Zika, dengue, and chikungunya using mechanistic models
Cited by: 387
Author(s): Erin A. Mordecai, Jeremy M. Cohen, Michelle V. Evans, Prithvi Gudapati, Leah R. Johnson, Catherine A. Lippi, Kerri L. Miazgowicz, Courtney C. Murdock, Jason R. Rohr, Sadie J. Ryan, Van M. Savage, Marta S. Shocket, Anna Stewart Ibarra, Matthew B. Thomas, Daniel P. Weikel
Software Mentions: 4
Published: over 9 years ago

10.3390/genes12070952

Identification of Key Metabolic Pathways and Biomarkers Underlying Flowering Time of Guar (Cyamopsis tetragonoloba (L.) Taub.) via Integrated Transcriptome-Metabolome Analysis
Cited by: 4
Author(s): Elizaveta Grigoreva, А.А. Ткаченко, Serafima Arkhimandritova, Aleksandar Beatovic, Pavel Ulianich, В. А. Волков, Dmitry Karzhaev, Cécile Ben, Laurent Gentzbittel, Elena Potokina
Software Mentions: 4
Published: about 5 years ago

10.1038/srep20518

Discovering gene re-ranking efficiency and conserved gene-gene relationships derived from gene co-expression network analysis on breast cancer data
Cited by: 27
Author(s): Marilena M. Bourdakou, Emmanouil Athanasiadis, George M. Spyrou
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pntd.0008945

Multi-locus genotyping reveals established endemicity of a geographically distinct Plasmodium vivax population in Mauritania, West Africa
Cited by: 7
Author(s): Hampaté Bâ, Sarah Auburn, Christopher G Jacob, Sónia Gonçalves, Craig W. Duffy, Lindsay B. Stewart, Ric N. Price, Yacine Boubou Deh, M. Diallo, Abderahmane Tandia, Dominic Kwiatkowski, David J. Conway
Software Mentions: 4
Published: over 5 years ago

10.21203/rs.3.rs-333578/v1

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19
Cited by: 2
Author(s): Brian Le, Gaia Andreoletti, Tomiko Oskotsky, Albert Vallejo-Gracia, Romel Rosales, Katharine Yu, Idit Kosti, Kristoffer E. Leon, Daniel Bunis, Christine Li, G. Renuka Kumar, Kris M. White, Adolfo Garcı́a-Sastre, Mélanie Ott, Marina Sirota
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0208263

QTM: Computational package using MPI protocol for Quantum Trajectories Method
Cited by: 1
Author(s): Marek Sawerwain, Joanna Wiśniewska
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pgen.1008181

Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals
Cited by: 101
Author(s): Shira Perez, Antony Kaspi, Tom Domovitz, Ateret Davidovich, Anat Lavi-Itzkovitz, Tomer Meirson, Jacinta A Holmes, Chia Yen Dai, Chung Feng Huang, Raymond T. Chung, Nimer Assy, Assam El‐Osta, Gur Yaari, Salomon M. Stemmer, Ming‐Lung Yu, Izhak Haviv, Meital Gal-Tanamy
Software Mentions: 4
Published: about 7 years ago

10.1186/s12864-019-5667-4

Postovulatory maternal transcriptome in Atlantic salmon and its relation to developmental potential of embryos
Cited by: 8
Author(s): Teshome Tilahun Bizuayehu, Maren Mommens, Arvind Sundaram, Anusha K. S. Dhanasiri, Igor Babiak
Software Mentions: 4
Published: over 7 years ago

10.1186/s12859-020-3465-2

PathME: pathway based multi-modal sparse autoencoders for clustering of patient-level multi-omics data
Cited by: 33
Author(s): Amina Lemsara, Salima Ouadfel, Holger Fröhlich
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2407-14-977

Identification of a candidate prognostic gene signature by transcriptome analysis of matched pre- and post-treatment prostatic biopsies from patients with advanced prostate cancer
Cited by: 41
Author(s): Prabhakar Rajan, Jacqueline Stockley, Ian Sudbery, Janis Fleming, Ann Hedley, Gabriela Kalna, David Sims, Chris P. Ponting, Andreas Heger, Craig Robson, R. McMenemin, Ian Pedley, Hing Y. Leung
Software Mentions: 4
Published: over 11 years ago

10.1186/1471-2164-11-138

Escherichia coli infection induces distinct local and systemic transcriptome responses in the mammary gland
Cited by: 114
Author(s): Simone Mitterhuemer, Wolfram Petzl, Stefan Krebs, Daniel Mehne, Andrea Klanner, Eckhard Wolf, Holm Zerbe, Helmut Blum
Software Mentions: 4
Published: over 16 years ago

10.1371/journal.pgen.1005869

The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster
Cited by: 44
Author(s): Nicolas Svetec, Julie M. Cridland, Li Zhao, David J. Begun
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-018-30089-2

Predictive ability of genome-assisted statistical models under various forms of gene action
Cited by: 34
Author(s): Mehdi Momen, Ahmad Ayatollahi Mehrgardi, Ayyub Sheikhi, Andreas Kranis, Llibertat Tusell, Gota Morota, Guilherme J. M. Rosa, Daniel Gianola
Software Mentions: 4
Published: about 8 years ago

10.3758/s13420-017-0260-7

Optimisation of cognitive performance in rodent operant (touchscreen) testing: Evaluation and effects of reinforcer strength
Cited by: 25
Author(s): Benjamin U. Phillips, Christopher Heath, Zofia Ossowska, Timothy J. Bussey, Lisa M. Saksida
Software Mentions: 4
Published: over 9 years ago

10.1371/journal.pone.0231759

Links between the rumen microbiota, methane emissions and feed efficiency of finishing steers offered dietary lipid and nitrate supplementation
Cited by: 19
Author(s): J M Bowen, Paul Cormican, S.J. Lister, Matthew S. McCabe, Carol-Anne Duthie, R. Roehe, Richard J. Dewhurst
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pcbi.1003480

GAGA: A New Algorithm for Genomic Inference of Geographic Ancestry Reveals Fine Level Population Substructure in Europeans
Cited by: 9
Author(s): Oscar Lao, Fan Liu, Andreas Wollstein, Manfred Kayser
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.pone.0231125

Analysis of circulating-microRNA expression in lactating Holstein cows under summer heat stress
Cited by: 14
Author(s): Jihwan Lee, Mi Kyung Lee, Jun-Kyu Son, Hyeonju Lim, Euntae Kim, Dong-Hyun Kim, Seungmin Ha, Tai-Young Hur, Seung Hwan Lee, Inchul Choi
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12864-021-07416-5

Transcriptome analysis and molecular mechanism of linseed (Linum usitatissimum L.) drought tolerance under repeated drought using single-molecule long-read sequencing
Cited by: 20
Author(s): Wei Wang, Lei Wang, Ling Wang, Mingqian Tan, Collins Ogutu, Ziyan Yin, Jian Zhou, Jiaomei Wang, Lijun Wang, Xin Yan
Software Mentions: 4
Published: over 5 years ago

10.1111/acel.13195

Growth differentiation factor 15 protects against the aging‐mediated systemic inflammatory response in humans and mice
Cited by: 59
Author(s): Ji Sun Moon, Ludger Goeminne, Jung Tae Kim, Jing Tian, Seok Hwan Kim, Ha Thi Nga, Sun Hyung Kang, Baeki E. Kang, Jin Seok Byun, Young‐Sun Lee, Jae‐Han Jeon, Minho Shong, Johan Auwerx, Dongryeol Ryu, Hyon‐Seung Yi
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0140815

Somatic Variation of T-Cell Receptor Genes Strongly Associate with HLA Class Restriction
Cited by: 23
Author(s): Paul L. Klarenbeek, Marieke E. Doorenspleet, Rebecca E. E. Esveldt, Barbera D. C. van Schaik, Neubury M. Lardy, Antoine H. C. van Kampen, Paul P. Tak, Robert M. Plenge, Frank Baas, Paul I. W. de Bakker, Niek de Vries
Software Mentions: 4
Published: almost 11 years ago

10.1186/s12864-017-3944-7

Genome-wide signals of positive selection in strongylocentrotid sea urchins
Cited by: 11
Author(s): Kord M. Kober, Grant H. Pogson
Software Mentions: 4
Published: about 9 years ago

10.1111/tpj.14299

Hybrid sequencing reveals insight into heat sensing and signaling of bread wheat
Cited by: 46
Author(s): Xiaoming Wang, Siyuan Chen, Song Xue, Danni Liu, Peng Zhao, Yunze Lu, Yanbing Cheng, Zhenshan Liu, Xiaojun Nie, Weining Song, Qixin Sun, Shengbao Xu, Chuang Ma
Software Mentions: 4
Published: over 7 years ago

10.1096/fj.201600675R

New function of the myostatin/activin type I receptor (ALK4) as a mediator of muscle atrophy and muscle regeneration
Cited by: 22
Author(s): Svitlana Pasteuning-Vuhman, Johanna W Boertje-van der Meulen, Maaike van Putten, Maurice Overzier, Peter ten Dijke, Szymon M. Kiełbasa, Wibowo Arindrarto, Ron Wolterbeek, Ksenia Lezhnina, Ivan V. Ozerov, Aleksandr M Aliper, Willem M.H. Hoogaars, Annemieke Aartsma‐Rus, Cindy J.M. Loomans
Software Mentions: 4
Published: almost 10 years ago

10.1038/s41598-019-49446-w

De novo transcriptome provides insights into the growth behaviour and resveratrol and trans-stilbenes biosynthesis in Dactylorhiza hatagirea - An endangered alpine terrestrial orchid of western Himalaya
Cited by: 19
Author(s): Nisha Dhiman, Nitesh Kumar Sharma, Pooja Thapa, Isha Sharma, Mohit Kumar Swarnkar, Amit Chawla, Ravi Shankar, Amita Bhattacharya
Software Mentions: 4
Published: almost 7 years ago

10.3390/genes11020216

Repetitive DNA Restructuring Across Multiple Nicotiana Allopolyploidisation Events Shows a Lack of Strong Cytoplasmic Bias in Influencing Repeat Turnover
Cited by: 6
Author(s): Steven Dodsworth, Maïté S. Guignard, Oscar Alejandro Pérez‐Escobar, Monika Struebig, Mark W. Chase, Andrew R. Leitch
Software Mentions: 4
Published: over 6 years ago

10.1186/s12870-021-02980-0

Genetic diversity structure of western-type carrots
Cited by: 7
Author(s): Katarzyna Stelmach, Alicja Macko-Podgórni, Charlotte J. Allender, Dariusz Grzebelus
Software Mentions: 4
Published: over 5 years ago

10.1038/s41408-020-0320-7

“Direct to Drug” screening as a precision medicine tool in multiple myeloma
Cited by: 18
Author(s): Cecília Bonolo de Campos, Nathalie Meurice, Joachim Petit, Alysia Polito, Yuan Xiao Zhu, Panwen Wang, Laura A. Bruins, Xuewei Wang, Ilsel D Lopez Armenta, Susie A. Darvish, Greg Ahmann, Kimberly J. Henderson, Shulan Tian, Jonas Kruse, William Stewart, Jeremy T. Larsen, Craig B. Reeder, David Dingli, Prashant Kapoor, Shaji Kumar, Rafaël Fonseca, P. Leif Bergsagel, Esteban Braggio, A. Keith Stewart
Software Mentions: 3
Published: over 6 years ago

10.1002/bit.26891

Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture
Cited by: 35
Author(s): Inmaculada Hernández, Heena Dhiman, Gerald Klanert, Vaibhav Jadhav, Norbert Auer, Michael Hanscho, Martina Baumann, Anna Esteve‐Codina, Marc Dabad, Jessica Gómez, Tyler Alioto, Angelika Merkel, Emanuele Raineri, Simon Heath, Daniel Rico, Nicole Borth
Software Mentions: 3
Published: over 7 years ago

10.3390/biom11030458

A Molecular Modeling Approach to Identify Potential Antileishmanial Compounds Against the Cell Division Cycle (cdc)-2-Related Kinase 12 (CRK12) Receptor of Leishmania donovani
Cited by: 18
Author(s): Emmanuel Broni, Samuel K. Kwofie, Seth O. Asiedu, Whelton A. Miller, Michael D. Wilson
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2105-11-315

μ-CS: An extension of the TM4 platform to manage Affymetrix binary data
Cited by: 43
Author(s): Pietro Hiram Guzzi, Mario Cannataro
Software Mentions: 3
Published: about 16 years ago

10.1186/1471-2164-10-202

Distinct patterns of gene and protein expression elicited by organophosphorus pesticides in Caenorhabditis elegans
Cited by: 43
Author(s): John A. Lewis, M. Szilágyi, Elizabeth Gehman, William E. Dennis, David A. Jackson
Software Mentions: 3
Published: over 17 years ago

10.1002/joc.4326

Asymmetric trends in seasonal temperature variability in instrumental records from ten stations in Switzerland, Germany and the <scp>UK</scp> from 1864 to 2012
Cited by: 32
Author(s): Michael Matiu, Donna P. Ankerst, Annette Menzel
Software Mentions: 3
Published: over 11 years ago

10.1155/2020/7510120

Identification of Prognostic Immune Genes in Bladder Urothelial Carcinoma
Cited by: 2
Author(s): Qingde Su, Yan Sun, Zunni Zhang, Zheng Yang, Yuling Qiu, Xiaohong Li, Wuning Mo
Software Mentions: 3
Published: over 6 years ago

10.1155/2015/690873

Bioinformatics Methods and Biological Interpretation for Next-Generation Sequencing Data
Cited by: 7
Author(s): Guohua Wang, Yunlong Liu, Dongxiao Zhu, Gunnar W. Klau, Weixing Feng
Software Mentions: 3
Published: over 11 years ago

10.1111/1462-2920.14569

Competition and predation as possible causes of bacterial rarity
Cited by: 23
Author(s): Viola Kurm, Wim H. van der Putten, Simone Weidner, Stefan Geisen, L. Basten Snoek, Tanja Bakx, W. H. Gera Hol
Software Mentions: 3
Published: over 7 years ago

10.1167/iovs.17-22173

Novel Myopia Genes and Pathways Identified From Syndromic Forms of Myopia
Cited by: 47
Author(s): Daniel Ian Flitcroft, James Loughman, Christine F. Wildsoet, Cathy Williams, Jeremy A. Guggenheim
Software Mentions: 3
Published: over 8 years ago

10.1186/s12863-016-0363-8

Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants
Cited by: 66
Author(s): Terhi Iso-Touru, Goutam Sahana, Bernt Guldbrandtsen, Mogens Sandø Lund, Johanna Vilkki
Software Mentions: 3
Published: over 10 years ago

10.3390/biology9100315

Phenotypic Responses, Reproduction Mode and Epigenetic Patterns under Temperature Treatments in the Alpine Plant Species Ranunculus kuepferi (Ranunculaceae)
Cited by: 9
Author(s): Eleni Syngelaki, Mareike Daubert, Simone Klatt, Elvira Hörandl
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12859-016-0885-0

Deciphering transcriptional regulations coordinating the response to environmental changes
Cited by: 1
Author(s): Vicente Acuña, Andrés Aravena, Carito Guziołowski, Damien Eveillard, Anne Siegel, Alejandro Maass
Software Mentions: 3
Published: over 10 years ago

10.1186/1471-230X-10-60

The Role of T cell PPAR γ in mice with experimental inflammatory bowel disease
Cited by: 68
Author(s): Amir J. Guri, Saroj Kant Mohapatra, William Horne, Raquel Hontecillas, Josep Bassaganya‐Riera
Software Mentions: 3
Published: about 16 years ago

10.1098/rsbl.2016.0432

Behavioural adaptations to flight into thin air
Cited by: 22
Author(s): Sherub Sherub, Gil Bohrer, Martin Wikelski, Rolf Weinzierl
Software Mentions: 3
Published: almost 10 years ago

10.3390/ani10111943

Efficacy of Oxyclozanide and Closantel against Rumen Flukes (Paramphistomidae) in Naturally Infected Sheep
Cited by: 7
Author(s): David García-Dios, Pablo Díaz, M. Viña, Susana Remesar, Alberto Prieto, Gonzalo López-Lorenzo, José Manuel Díaz Cao, Rosario Panadero Fontán, P. Díez‐Baños, C. López
Software Mentions: 3
Published: almost 6 years ago

10.1128/mBio.00987-21

Shared and Unique Evolutionary Trajectories to Ciprofloxacin Resistance in Gram-Negative Bacterial Pathogens
Cited by: 7
Author(s): Jaime E. Zlamal, Semen A. Leyn, Mallika Iyer, Marinela L. Elane, Nicholas Wong, James W. Wamsley, Maarten Vercruysse, Fernando García-Alcalde, Andrei L. Osterman
Software Mentions: 3
Published: about 5 years ago

10.1002/ece3.5858

Quantitative and qualitative consequences of reduced pollen loads in a mixed‐mating plant
Cited by: 10
Author(s): Laura Hildesheim, Øystein H. Opedal, W. Scott Armbruster, Christophe Pélabon
Software Mentions: 3
Published: over 6 years ago

10.1038/tp.2016.101

Epigenetic differences in monozygotic twins discordant for major depressive disorder
Cited by: 37
Author(s): Karim Malki, Elena Koritskaya, Fraser Harris, Kevin Bryson, Mark Herbster, Maria Grazia Tosto
Software Mentions: 3
Published: about 10 years ago

10.1002/ece3.6159

Canadian polar bear population structure using genome‐wide markers
Cited by: 8
Author(s): Evelyn L. Jensen, Christina Tschritter, Peter van Coeverden de Groot, Kristen M. Hayward, Marsha Branigan, Markus Dyck, Rute B. G. Clemente-Carvalho
Software Mentions: 3
Published: over 6 years ago

10.1101/2020.08.22.262931

Theoretical basis for stabilizing messenger RNA through secondary structure design
Cited by: 16
Author(s): Hannah K. Wayment-Steele, Do Soon Kim, Christian A. Choe, John J Nicol, Roger Wellington-Oguri, Andrew Watkins, R Andres Parra Sperberg, Po-Ssu Huang, Eterna Participants, Rhiju Das
Software Mentions: 3
Published: almost 6 years ago

10.1186/1756-0381-2-3

Partitioning clustering algorithms for protein sequence data sets
Cited by: 17
Author(s): Sondès Fayech, Nadia Essoussi, Mohamed Limam
Software Mentions: 3
Published: over 17 years ago

10.1002/sim.8450

Improving safety of the continual reassessment method via a modified allocation rule
Cited by: 8
Author(s): Pavel Mozgunov, Thomas Jaki
Software Mentions: 3
Published: over 6 years ago

10.1177/0962280219873005

Simultaneous inference for multiple marginal generalized estimating equation models
Cited by: 8
Author(s): Robin Ristl, Ludwig A. Hothorn, Christian Ritz, Martin Posch
Software Mentions: 3
Published: almost 7 years ago

10.1128/mSphere.00482-19

Genomic Variation among Strains of Crithidia bombi and C. expoeki
Cited by: 7
Author(s): Evgeny S. Gerasimov, Niklaus Zemp, Regula Schmid‐Hempel, Paul Schmid‐Hempel, Vyacheslav Yurchenko
Software Mentions: 3
Published: almost 7 years ago

10.1186/1472-6874-12-9

Treatment of endometriosis in different ethnic populations: a meta-analysis of two clinical trials
Cited by: 28
Author(s): Christoph Gerlinger, Thomas Faustmann, Jeffrey J Hassall, Christian Seitz
Software Mentions: 3
Published: over 14 years ago

10.3390/s21072447

A BCI Based Alerting System for Attention Recovery of UAV Operators
Cited by: 8
Author(s): Jong-Hyuk Park, Jonghun Park, Dongmin Shin, Yerim Choi
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-021-85850-x

On the use of envelope following responses to estimate peripheral level compression in the auditory system
Cited by: 5
Author(s): Gerard Encina-Llamas, Torsten Dau, Bastian Epp
Software Mentions: 3
Published: over 5 years ago

10.1186/s13104-021-05729-y

XPolaris: an R-package to retrieve United States soil data at 30-meter resolution
Cited by: 3
Author(s): Luiz H. Moro Rosso, André Fróes de Borja Reis, Adrián A. Correndo, Ignacio A. Ciampitti
Software Mentions: 3
Published: almost 5 years ago

10.1002/ece3.6412

Lunar synchronization of daily activity patterns in a crepuscular avian insectivore
Cited by: 17
Author(s): Ruben Evens, Céline Kowalczyk, Gabriel Norevik, Eddy Ulenaers, Batmunkh Davaasuren, Soddelgerekh Bayargur, Tom Artois, Susanne Åkesson, Anders Hedenström, Félix Liechti, Mihai Vâlcu, Bart Kempenaers
Software Mentions: 3
Published: about 6 years ago

10.1186/s13395-020-00236-3

A reference single-cell transcriptomic atlas of human skeletal muscle tissue reveals bifurcated muscle stem cell populations
Cited by: 109
Author(s): Andrea De Micheli, Jason A. Spector, Olivier Elemento, Benjamin D. Cosgrove
Software Mentions: 3
Published: about 6 years ago

10.1186/1472-6785-12-19

Contrasting habitat associations of imperilled endemic stream fishes from a global biodiversity hot spot
Cited by: 18
Author(s): Albert Chakona, Ernst R. Swartz
Software Mentions: 3
Published: over 14 years ago

10.1002/ece3.3505

Residence time, native range size, and genome size predict naturalization among angiosperms introduced to Australia
Cited by: 9
Author(s): John P. Schmidt, John M. Drake, Patrick R. Stephens
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12859-016-0975-z

CoeViz: a web-based tool for coevolution analysis of protein residues
Cited by: 39
Author(s): Frazier N. Baker, Aleksey Porollo
Software Mentions: 3
Published: over 10 years ago

10.1002/ece3.6545

Lousy grouse: Comparing evolutionary patterns in Alaska galliform lice to understand host evolution and host–parasite interactions
Cited by: 9
Author(s): Andrew D. Sweet, R. E. Wilson, Sarah A. Sonsthagen, Kevin P. Johnson
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-021-83274-1

Preservation of epoxyeicosatrienoic acid bioavailability prevents renal allograft dysfunction and cardiovascular alterations in kidney transplant recipients
Cited by: 4
Author(s): Thomas Duflot, Charlotte Laurent, Anne Soudey, Xavier Fonrose, M. Hamzaoui, Michèle Iacob, Dominique Bertrand, Julie Favre, Isabelle Étienne, Colette Roche, David Coquerel, M. Le Besnerais, Safa Louhichi, Tracy Tarlet, Dongyang Li, V. Brunel, Christophe Morisseau, Vincent Richard, Robinson Joannidès, Françoise Stanke‐Labesque, Fabien Lamoureux, Dominique Guerrot, J. Bellien
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-72735-8

Genome-wide association mapping for wheat blast resistance in CIMMYT’s international screening nurseries evaluated in Bolivia and Bangladesh
Cited by: 26
Author(s): Philomin Juliana, Xinyao He, Muhammad Rezaul Kabir, Krishna Kanta Roy, Md. Babul Anwar, Félix Marza, Jesse Poland, Sandesh Shrestha, Ravi P. Singh, Pawan Kumar Singh
Software Mentions: 3
Published: almost 6 years ago

10.1186/1471-2229-13-122

P-TRAP: a Panicle Trait Phenotyping tool
Cited by: 66
Author(s): Faroq Al-Tam, Hélène Adam, António dos Anjos, Mathias Lorieux, Pierre Larmande, Alain Ghesquière, Stéfan Jouannic, Hamid Reza Shahbazkia
Software Mentions: 3
Published: almost 13 years ago

10.1038/s41598-020-73748-z

Demographic history and adaptive synonymous and nonsynonymous variants of nuclear genes in Rhododendron oldhamii (Ericaceae)
Cited by: 1
Author(s): Yi Chiang Hsieh, Chih-Hsiung Chang, Jeng Der Chung, Shih Ying Hwang
Software Mentions: 3
Published: almost 6 years ago

10.3390/ph14010041

Modulation of the Immune Response by Deferasirox in Myelodysplastic Syndrome Patients
Cited by: 4
Author(s): Hana Votavová, Zuzana Urbanová, David Kundrát, Michaela Dostálová Merkerová, Martin Vostrý, Monika Hruba, Jaroslav Čermák, Monika Beličková
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.7366

Asexual reproduction of a few genotypes favored the invasion of the cereal aphidRhopalosiphum padiin Chile
Cited by: 4
Author(s): María E Rubio-Meléndez, Joceline Barrios-Sanmartín, Felipe E. Pina-Castro, Christian C. Figueroa, C. Ramı́rez
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-020-65115-9

Dichotomy between the transcriptomic landscape of naturally versus accelerated aged murine hearts
Cited by: 0
Author(s): Federica De Majo, Jana-Charlotte Hegenbarth, Frank Rühle, Christian Bär, Thomas Thum, Martine de Boer, Dirk J. Duncker, Blanche Schroen, Anne-Sophie Armand, Monika Stoll, León J. De Windt
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.6115

The role of Central American barriers in shaping the evolutionary history of the northernmost glassfrog,Hyalinobatrachium fleischmanni(Anura: Centrolenidae)
Cited by: 19
Author(s): Ángela María Mendoza, Wilmar Bolívar-García, Ella Vázquez‐Domínguez, Roberto Ibáñez, Gabriela Parra Olea
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-020-61178-w

Radiomics prognostication model in glioblastoma using diffusion- and perfusion-weighted MRI
Cited by: 41
Author(s): Ji Eun Park, Ho Sung Kim, Youngheun Jo, Roh Eul Yoo, Seung Hong Choi, Soo Jung Nam
Software Mentions: 3
Published: over 6 years ago

Projects: pypi: package

Science Score: 65/100

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Papers Mentioning package 1,300