pypi: package | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-85735-z

The phylogeographic history of Krascheninnikovia reflects the development of dry steppes and semi-deserts in Eurasia
Cited by: 9
Author(s): Anna Seidl, Karin Tremetsberger, Simon Pfanzelt, Frank R. Blattner, Barbara Neuffer, Nikolai Friesen, Herbert Hurka, А. И. Шмаков, Batlai Oyuntsetseg, Anže Žerdoner Čalasan, Polina V. Vesselova, Karl‐Georg Bernhardt
Software Mentions: 4
Published: over 3 years ago

10.1186/s12915-019-0626-8

Transcriptome, proteome and draft genome of Euglena gracilis
Cited by: 88
Author(s): ThankGod Echezona Ebenezer, Martin Zoltner, Alana Burrell, Anna Nenarokova, Anna M. G. Novák Vanclová, Binod Prasad, Petr Soukal, Carlos Santana-Molina, Ellis C. O’Neill, Nerissa N. Nankissoor, Nithya Vadakedath, Viktor Daiker, Samson O. Obado, Sara Silva Pereira, Andrew P. Jackson, Damien P. Devos, Julius Lukeš, Michael Lebert, Sue Vaughan, Vladimı́r Hampl, Mark Carrington, Michael L. Ginger, Joel B. Dacks, Steven L. Kelly, Mark C. Field
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-020-77063-5

Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance
Cited by: 18
Author(s): Alexandre Hild Aono, Everardo Andrade da Costa, Hugo Vianna Silva Rody, James Shiniti Nagai, Ricardo José Gonzaga Pimenta, Melina Cristina Mancini, Fernanda Raquel Camilo dos Santos, Luciana Rossini Pinto, Marcos Guimarães de Andrade Landell, Anete Pereira de Souza, Reginaldo Massanobu Kuroshu
Software Mentions: 4
Published: about 4 years ago

10.1111/1755-0998.13044

Rapid identification and interpretation of gene–environment associations using the new R.SamBada landscape genomics pipeline
Cited by: 15
Author(s): Solange Duruz, Natalia Sevane, Oliver Selmoni, Elia Vajana, Kevin Leempoel, Sylvie Stucki, Pablo Orozco‐terWengel, Estelle Rochat, S. Dunner, Michael William Bruford, Stéphane Joost
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-91625-1

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19
Cited by: 24
Author(s): Brian Le, Gaia Andreoletti, Tomiko Oskotsky, Albert Vallejo-Gracia, Romel Rosales, Katharine Yu, Idit Kosti, Kristoffer E. Leon, Daniel Bunis, Christine Li, G. Renuka Kumar, Kris M. White, Adolfo Garcı́a-Sastre, Mélanie Ott, Marina Sirota
Software Mentions: 4
Published: over 3 years ago

10.3390/s140815348

Intra-and-Inter Species Biomass Prediction in a Plantation Forest: Testing the Utility of High Spatial Resolution Spaceborne Multispectral RapidEye Sensor and Advanced Machine Learning Algorithms
Cited by: 104
Author(s): Timothy Dube, Onisimo Mutanga, Elhadi Adam, Riyad Ismail
Software Mentions: 4
Published: over 10 years ago

10.1038/s41598-019-51056-5

Down-regulation of CK2α correlates with decreased expression levels of DNA replication minichromosome maintenance protein complex (MCM) genes
Cited by: 4
Author(s): Susanne Schaefer, Thomas Koed Doktor, Sabrina B Frederiksen, Kathleen Chea, Mirka Hlavacova, Georg M. Bruun, Maj Rabjerg, Brage S. Andresen, Isabel Domı́nguez, Bárbara Guerra
Software Mentions: 4
Published: about 5 years ago

10.1111/eva.12904

Pattern of local adaptation to quantitative host resistance in a major pathogen of a perennial crop
Cited by: 6
Author(s): Thomas Dumartinet, Catherine Abadie, François Bonnot, Françoise Carreel, Véronique Roussel, Rémy Habas, Reina Teresa Martínez, Luis Pérez-Vicente, Jean Carlier
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-019-49446-w

De novo transcriptome provides insights into the growth behaviour and resveratrol and trans-stilbenes biosynthesis in Dactylorhiza hatagirea - An endangered alpine terrestrial orchid of western Himalaya
Cited by: 19
Author(s): Nisha Dhiman, Nitesh Kumar Sharma, Pooja Thapa, Isha Sharma, Mohit Kumar Swarnkar, Amit Chawla, Ravi Shankar, Amita Bhattacharya
Software Mentions: 4
Published: about 5 years ago

10.3390/microorganisms8122043

Identification of Nitrogen Fixation Genes in Lactococcus Isolated from Maize Using Population Genomics and Machine Learning
Cited by: 10
Author(s): Shawn M. Higdon, Bihua C. Huang, A. B. Bennett, Bart C. Weimer
Software Mentions: 4
Published: almost 4 years ago

10.1186/1471-2105-13-S10-S7

A systematic comparison of genome-scale clustering algorithms
Cited by: 45
Author(s): Jeremy J. Jay, John D. Eblen, Yun Zhang, Mikael Benson, Andy D. Perkins, Arnold M. Saxton, Brynn H. Voy, Elissa J. Chesler, Michael A. Langston
Software Mentions: 4
Published: over 12 years ago

10.1186/1471-2164-14-523

Systems perspectives on erythromycin biosynthesis by comparative genomic and transcriptomic analyses of S. erythraea E3 and NRRL23338 strains
Cited by: 38
Author(s): Yuanyuan Li, Xiao Chang, Wen-Bang Yu, Hao Li, Zhiqiang Ye, Hui Yu, Baohong Liu, Yan Zhang, Siliang Zhang, Bang‐Ce Ye, Yixue Li
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pone.0247055

Statistical meta-analysis to investigate the association between the Interleukin-6 (IL-6) gene polymorphisms and cancer risk
Cited by: 16
Author(s): Md. Harun-Or-Roshid, Md. Borqat Ali, Jesmin, Md. Nurul Haque Mollah
Software Mentions: 4
Published: over 3 years ago

10.3390/microorganisms8111679

Comparative Genomics of Pathogenic Clavibacter michiganensis subsp. michiganensis Strains from Chile Reveals Potential Virulence Features for Tomato Plants
Cited by: 13
Author(s): Valentina Méndez, Matías A. Valenzuela, Francisco Salvà‐Serra, Daniel Jaén‐Luchoro, Ximena Besoaín, Edward R. B. Moore, Michael Seeger
Software Mentions: 4
Published: about 4 years ago

10.1038/srep20518

Discovering gene re-ranking efficiency and conserved gene-gene relationships derived from gene co-expression network analysis on breast cancer data
Cited by: 27
Author(s): Marilena M. Bourdakou, Emmanouil Athanasiadis, George M. Spyrou
Software Mentions: 4
Published: almost 9 years ago

10.1002/ece3.6635

Genetic structuring among colonies of a pantropical seabird: Implication for subspecies validation and conservation
Cited by: 4
Author(s): Laurence Humeau, Matthieu Le Corre, Stuart F. Reynolds, Colin P. Wearn, Janos C. Hennicke, James C. Russell, Yann Gomard, Hélène Magalon, Patrick Pinet, Pauline Gélin, François Xavier Couzi, E. Bemanaja, Vikash Tatayah, Ousseni Bacar, Gérard Rocamora, Patrick Talbot, Nirmal Shah, Leandro Bugoni, Denis Da Silva, A. Jaeger
Software Mentions: 4
Published: about 4 years ago

10.1002/ece3.7711

Environmental filtering and dispersal limitation jointly shaped the taxonomic and phylogenetic beta diversity of natural forests in southern China
Cited by: 15
Author(s): Wei Shi, Yongqiang Wang, Wenhua Xiang, Xiankun Li, Kaihua Cao
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0172829

Small rodents as paratenic or intermediate hosts of carnivore parasites in Berlin, Germany
Cited by: 27
Author(s): Jürgen Krücken, Julia Blümke, Denny Maaz, Janina Demeler, Sabrina Ramünke, Daniela Antolová, Roland Schaper, Georg von Samson‐Himmelstjerna
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2105-7-176

The Gaggle: An open-source software system for integrating bioinformatics software and data sources
Cited by: 149
Author(s): Paul Shannon, David J Reiss, Richard Bonneau, Nitin S. Baliga
Software Mentions: 4
Published: over 18 years ago

10.1002/ece3.660

Investigating sex-specific dynamics using uniparental markers: West New Guinea as a case study
Cited by: 4
Author(s): Stefano Mona, Ernest Mordret, Michel Veuille, Mila Tommaseo-Ponzetta
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0180236

An adjustable predictive score of graft survival in kidney transplant patients and the levels of risk linked to de novo donor-specific anti-HLA antibodies
Cited by: 14
Author(s): Aurélie Prémaud, Matthieu Filloux, Philippe Gatault, Antoine Thierry, Matthias Büchler, E Munteanu, Pierre Marquet, Marie Essig, Annick Rousseau
Software Mentions: 4
Published: over 7 years ago

10.1136/ard.2008.096172

Is the blood B-cell subset profile diagnostic for Sjögren syndrome?
Cited by: 72
Author(s): Aymeric Binard, Laëtitia Le Pottier, Valérie Devauchelle‐Pensec, Alain Saraux, Pierre Youinou, Jacques‐Olivier Pers
Software Mentions: 4
Published: about 16 years ago

10.1186/s12864-019-6021-6

Transcriptomics analysis revealing candidate genes and networks for sex differentiation of yesso scallop (Patinopecten yessoensis)
Cited by: 17
Author(s): Liqing Zhou, Zhihong Liu, Yan Dong, Xiujun Sun, Biao Wu, Tao Yu, Yao Zheng, Aiguo Yang, Qing Zhao, Dan Zhao
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.7501

Interactive effects of body mass changes and species‐specific morphology on flight behavior of chick‐rearing Antarctic fulmarine petrels under diurnal wind patterns
Cited by: 5
Author(s): Nina Dehnhard, Andrew Klekociuk, Louise Emmerson
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-018-30089-2

Predictive ability of genome-assisted statistical models under various forms of gene action
Cited by: 34
Author(s): Mehdi Momen, Ahmad Ayatollahi Mehrgardi, Ayyub Sheikhi, Andreas Kranis, Llibertat Tusell, Gota Morota, Guilherme J. M. Rosa, Daniel Gianola
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pntd.0005568

Detecting the impact of temperature on transmission of Zika, dengue, and chikungunya using mechanistic models
Cited by: 387
Author(s): Erin A. Mordecai, Jeremy M. Cohen, Michelle V. Evans, Prithvi Gudapati, Leah R. Johnson, Catherine A. Lippi, Kerri L. Miazgowicz, Courtney C. Murdock, Jason R. Rohr, Sadie J. Ryan, Van M. Savage, Marta S. Shocket, Anna Stewart Ibarra, Matthew B. Thomas, Daniel P. Weikel
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.3699

Spatial and temporal genetic dynamics of the grasshopper <i>Oedaleus decorus</i> revealed by museum genomics
Cited by: 14
Author(s): Sarah Schmid, Samuel Neuenschwander, Camille Pitteloud, Gerald Heckel, Mila Pajkovic, Raphaël Arlettaz, Nadir Alvarez
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pntd.0008945

Multi-locus genotyping reveals established endemicity of a geographically distinct Plasmodium vivax population in Mauritania, West Africa
Cited by: 7
Author(s): Hampaté Bâ, Sarah Auburn, Christopher G Jacob, Sónia Gonçalves, Craig W. Duffy, Lindsay B. Stewart, Ric N. Price, Yacine Boubou Deh, M. Diallo, Abderahmane Tandia, Dominic Kwiatkowski, David J. Conway
Software Mentions: 4
Published: almost 4 years ago

10.1186/2049-1891-3-8

Current status and future perspectives for sequencing livestock genomes
Cited by: 40
Author(s): Yongsheng Bai, Maureen A. Sartor, James D. Cavalcoli
Software Mentions: 4
Published: over 12 years ago

10.1186/s13195-020-00598-2

Characterization of the chromatin accessibility in an Alzheimer’s disease (AD) mouse model
Cited by: 24
Author(s): Yaqi Wang, Xiaomin Zhang, Shan Qiao, Yuli Hou, Jing Liu, Yu Sun, Peichang Wang
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0208263

QTM: Computational package using MPI protocol for Quantum Trajectories Method
Cited by: 1
Author(s): Marek Sawerwain, Joanna Wiśniewska
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pgen.1008181

Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals
Cited by: 101
Author(s): Shira Perez, Antony Kaspi, Tom Domovitz, Ateret Davidovich, Anat Lavi-Itzkovitz, Tomer Meirson, Jacinta A Holmes, Chia Yen Dai, Chung Feng Huang, Raymond T. Chung, Nimer Assy, Assam El‐Osta, Gur Yaari, Salomon M. Stemmer, Ming‐Lung Yu, Izhak Haviv, Meital Gal-Tanamy
Software Mentions: 4
Published: over 5 years ago

10.1093/gigascience/giy118

Extensive evaluation of the generalized relevance network approach to inferring gene regulatory networks
Cited by: 5
Author(s): Vladimir Kuzmanovski, Ljupčo Todorovski, Sašo Džeroski
Software Mentions: 4
Published: about 6 years ago

10.1186/s12864-019-5667-4

Postovulatory maternal transcriptome in Atlantic salmon and its relation to developmental potential of embryos
Cited by: 8
Author(s): Teshome Tilahun Bizuayehu, Maren Mommens, Arvind Sundaram, Anusha K. S. Dhanasiri, Igor Babiak
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-020-3465-2

PathME: pathway based multi-modal sparse autoencoders for clustering of patient-level multi-omics data
Cited by: 33
Author(s): Amina Lemsara, Salima Ouadfel, Holger Fröhlich
Software Mentions: 4
Published: over 4 years ago

10.21203/rs.3.rs-333578/v1

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19
Cited by: 2
Author(s): Brian Le, Gaia Andreoletti, Tomiko Oskotsky, Albert Vallejo-Gracia, Romel Rosales, Katharine Yu, Idit Kosti, Kristoffer E. Leon, Daniel Bunis, Christine Li, G. Renuka Kumar, Kris M. White, Adolfo Garcı́a-Sastre, Mélanie Ott, Marina Sirota
Software Mentions: 4
Published: over 3 years ago

10.1096/fj.201600675R

New function of the myostatin/activin type I receptor (ALK4) as a mediator of muscle atrophy and muscle regeneration
Cited by: 22
Author(s): Svitlana Pasteuning-Vuhman, Johanna W Boertje-van der Meulen, Maaike van Putten, Maurice Overzier, Peter ten Dijke, Szymon M. Kiełbasa, Wibowo Arindrarto, Ron Wolterbeek, Ksenia Lezhnina, Ivan V. Ozerov, Aleksandr M Aliper, Willem M.H. Hoogaars, Annemieke Aartsma‐Rus, Cindy J.M. Loomans
Software Mentions: 4
Published: about 8 years ago

10.1186/1471-2164-11-138

Escherichia coli infection induces distinct local and systemic transcriptome responses in the mammary gland
Cited by: 114
Author(s): Simone Mitterhuemer, Wolfram Petzl, Stefan Krebs, Daniel Mehne, Andrea Klanner, Eckhard Wolf, Holm Zerbe, Helmut Blum
Software Mentions: 4
Published: over 14 years ago

10.1371/journal.pgen.1005869

The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster
Cited by: 44
Author(s): Nicolas Svetec, Julie M. Cridland, Li Zhao, David J. Begun
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.7526

Habitat fragmentation and vegetation structure impact gastrointestinal parasites of small mammalian hosts in Madagascar
Cited by: 7
Author(s): Frederik Kiene, Bertrand Andriatsitohaina, Malcolm S. Ramsay, Romule Rakotondravony, Christina Strübe, Ute Radespiel
Software Mentions: 4
Published: over 3 years ago

10.3758/s13420-017-0260-7

Optimisation of cognitive performance in rodent operant (touchscreen) testing: Evaluation and effects of reinforcer strength
Cited by: 25
Author(s): Benjamin U. Phillips, Christopher Heath, Zofia Ossowska, Timothy J. Bussey, Lisa M. Saksida
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-021-86406-9

Extreme philopatry and genetic diversification at unprecedented scales in a seabird
Cited by: 6
Author(s): D. K. Danckwerts, Laurence Humeau, Patrick Pinet, Christopher D. McQuaid, Matthieu Le Corre
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1003480

GAGA: A New Algorithm for Genomic Inference of Geographic Ancestry Reveals Fine Level Population Substructure in Europeans
Cited by: 9
Author(s): Oscar Lao, Fan Liu, Andreas Wollstein, Manfred Kayser
Software Mentions: 4
Published: almost 11 years ago

10.15252/emmm.201708202

A proteomic network approach across the <scp>ALS</scp> ‐ <scp>FTD</scp> disease spectrum resolves clinical phenotypes and genetic vulnerability in human brain
Cited by: 115
Author(s): Mfon Umoh, Eric B. Dammer, Jingting Dai, Duc M. Duong, James J. Lah, Aĺlan I. Levey, Marla Gearing, Jonathan D. Glass, Nicholas T. Seyfried
Software Mentions: 4
Published: almost 7 years ago

10.1186/s13059-019-1918-6

Enteric infection induces Lark-mediated intron retention at the 5′ end of Drosophila genes
Cited by: 4
Author(s): Maroun Bou Sleiman, Michael Frochaux, Tommaso Andreani, Dani Osman, Roderic Guigó, Bart Deplancke
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12864-021-07416-5

Transcriptome analysis and molecular mechanism of linseed (Linum usitatissimum L.) drought tolerance under repeated drought using single-molecule long-read sequencing
Cited by: 20
Author(s): Wei Wang, Lei Wang, Ling Wang, Mingqian Tan, Collins Ogutu, Ziyan Yin, Jian Zhou, Jiaomei Wang, Lijun Wang, Xin Yan
Software Mentions: 4
Published: almost 4 years ago

10.1111/acel.13195

Growth differentiation factor 15 protects against the aging‐mediated systemic inflammatory response in humans and mice
Cited by: 59
Author(s): Ji Sun Moon, Ludger Goeminne, Jung Tae Kim, Jing Tian, Seok Hwan Kim, Ha Thi Nga, Sun Hyung Kang, Baeki E. Kang, Jin Seok Byun, Young‐Sun Lee, Jae‐Han Jeon, Minho Shong, Johan Auwerx, Dongryeol Ryu, Hyon‐Seung Yi
Software Mentions: 4
Published: over 4 years ago

10.1002/eco.1827

The effects of catchment and riparian forest quality on stream environmental conditions across a tropical rainforest and oil palm landscape in Malaysian Borneo
Cited by: 55
Author(s): Sarah H. Luke, Holly Barclay, Kawi Bidin, Chey Vun Khen, Robert M. Ewers, William A. Foster, Anand Nainar, Marion Pfeifer, Glen Reynolds, Edgar C. Turner, R. P. D. Walsh, David C. Aldridge
Software Mentions: 4
Published: over 7 years ago

10.1186/gb-2011-12-3-r27

A genome-wide view of mutation rate co-variation using multivariate analyses
Cited by: 38
Author(s): Guruprasad Ananda, Francesca Chiaromonte, Kateryna D. Makova
Software Mentions: 4
Published: almost 14 years ago

10.1186/s12864-017-3944-7

Genome-wide signals of positive selection in strongylocentrotid sea urchins
Cited by: 11
Author(s): Kord M. Kober, Grant H. Pogson
Software Mentions: 4
Published: over 7 years ago

10.1038/s42003-020-0804-9

Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease
Cited by: 55
Author(s): Arlin Keo, Ahmed Mahfouz, Angela Ingrassia, Jean Pascal Meneboo, Céline Villenet, Eugénie Mutez, Thomas Comptdaer, Boudewijn P. F. Lelieveldt, Martin Figeac, Marie-Christine Chartier-Harlin, Wilma D. J. van de Berg, Jacobus J. van Hilten, Marcel J. T. Reinders
Software Mentions: 4
Published: over 4 years ago

10.1111/tpj.14299

Hybrid sequencing reveals insight into heat sensing and signaling of bread wheat
Cited by: 46
Author(s): Xiaoming Wang, Siyuan Chen, Song Xue, Danni Liu, Peng Zhao, Yunze Lu, Yanbing Cheng, Zhenshan Liu, Xiaojun Nie, Weining Song, Qixin Sun, Shengbao Xu, Chuang Ma
Software Mentions: 4
Published: over 5 years ago

10.3390/cancers13040851

Network Analysis Identifies Drug Targets and Small Molecules to Modulate Apoptosis Resistant Cancers
Cited by: 6
Author(s): Samreen Fathima, Swati Sinha, Sainitin Donakonda
Software Mentions: 4
Published: almost 4 years ago

10.3390/cancers13174483

Prognostic and Therapeutic Potential of the OIP5 Network in Papillary Renal Cell Carcinoma
Cited by: 6
Author(s): Mathilda Jing Chow, Yan Gu, Lizhi He, Xiaozeng Lin, Ying Dong, Wenjuan Mei, Anil Kapoor, Damu Tang
Software Mentions: 4
Published: about 3 years ago

10.3390/cancers13051109

Bacterial, Archaea, and Viral Transcripts (BAVT) Expression in Gynecological Cancers and Correlation with Regulatory Regions of the Genome
Cited by: 6
Author(s): Jesús González Bosquet, Silvana Pedra-Nobre, Eric J. Devor, Kristina W. Thiel, Michael J. Goodheart, David Bender, Kimberly K. Leslie
Software Mentions: 4
Published: over 3 years ago

10.1002/ece3.5032

Dissimilarity of individual microsatellite profiles under different mutation models: Empirical approach
Cited by: 12
Author(s): Evsey Kosman, Jukka Jokela
Software Mentions: 4
Published: over 5 years ago

10.1038/s41408-020-0320-7

“Direct to Drug” screening as a precision medicine tool in multiple myeloma
Cited by: 18
Author(s): Cecília Bonolo de Campos, Nathalie Meurice, Joachim Petit, Alysia Polito, Yuan Xiao Zhu, Panwen Wang, Laura A. Bruins, Xuewei Wang, Ilsel D Lopez Armenta, Susie A. Darvish, Greg Ahmann, Kimberly J. Henderson, Shulan Tian, Jonas Kruse, William Stewart, Jeremy T. Larsen, Craig B. Reeder, David Dingli, Prashant Kapoor, Shaji Kumar, Rafaël Fonseca, P. Leif Bergsagel, Esteban Braggio, A. Keith Stewart
Software Mentions: 3
Published: over 4 years ago

10.1002/bit.26891

Epigenetic regulation of gene expression in Chinese Hamster Ovary cells in response to the changing environment of a batch culture
Cited by: 35
Author(s): Inmaculada Hernández, Heena Dhiman, Gerald Klanert, Vaibhav Jadhav, Norbert Auer, Michael Hanscho, Martina Baumann, Anna Esteve‐Codina, Marc Dabad, Jessica Gómez, Tyler Alioto, Angelika Merkel, Emanuele Raineri, Simon Heath, Daniel Rico, Nicole Borth
Software Mentions: 3
Published: almost 6 years ago

10.3390/genes12020257

Differential Expression of a Panel of Ten CNTN1-Associated Genes during Prostate Cancer Progression and the Predictive Properties of the Panel towards Prostate Cancer Relapse
Cited by: 2
Author(s): Yan Gu, Mathilda Jing Chow, Anil Kapoor, Xiaozeng Lin, Wenjuan Mei, Damu Tang
Software Mentions: 3
Published: almost 4 years ago

10.3390/genes11060696

Comparative Pathway Integrator: A Framework of Meta-Analytic Integration of Multiple Transcriptomic Studies for Consensual and Differential Pathway Analysis
Cited by: 7
Author(s): Xiangrui Zeng, Wei Zong, Chien‐Wei Lin, Zhou Fang, Tianzhou Ma, David A. Lewis, John F. Enwright, George C. Tseng
Software Mentions: 3
Published: over 4 years ago

10.3390/biom11030458

A Molecular Modeling Approach to Identify Potential Antileishmanial Compounds Against the Cell Division Cycle (cdc)-2-Related Kinase 12 (CRK12) Receptor of Leishmania donovani
Cited by: 18
Author(s): Emmanuel Broni, Samuel K. Kwofie, Seth O. Asiedu, Whelton A. Miller, Michael D. Wilson
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2105-11-315

μ-CS: An extension of the TM4 platform to manage Affymetrix binary data
Cited by: 43
Author(s): Pietro Hiram Guzzi, Mario Cannataro
Software Mentions: 3
Published: over 14 years ago

10.3390/genes11070817

SOMmelier—Intuitive Visualization of the Topology of Grapevine Genome Landscapes Using Artificial Neural Networks
Cited by: 5
Author(s): Maria Nikoghosyan, Maria Schmidt, K. Margaryan, Henry Loeffler‐Wirth, Arsen Arakelyan, Hans Binder
Software Mentions: 3
Published: over 4 years ago

10.1186/1471-2164-10-202

Distinct patterns of gene and protein expression elicited by organophosphorus pesticides in Caenorhabditis elegans
Cited by: 43
Author(s): John A. Lewis, M. Szilágyi, Elizabeth Gehman, William E. Dennis, David A. Jackson
Software Mentions: 3
Published: almost 16 years ago

10.1155/2020/7510120

Identification of Prognostic Immune Genes in Bladder Urothelial Carcinoma
Cited by: 2
Author(s): Qingde Su, Yan Sun, Zunni Zhang, Zheng Yang, Yuling Qiu, Xiaohong Li, Wuning Mo
Software Mentions: 3
Published: almost 5 years ago

10.1155/2015/690873

Bioinformatics Methods and Biological Interpretation for Next-Generation Sequencing Data
Cited by: 7
Author(s): Guohua Wang, Yunlong Liu, Dongxiao Zhu, Gunnar W. Klau, Weixing Feng
Software Mentions: 3
Published: almost 10 years ago

10.1007/s10120-021-01195-4

Optimized PD-L1 scoring of gastric cancer
Cited by: 21
Author(s): Birgid Schoemig-Markiefka, Jana Eschbach, Andreas H. Scheel, Aylin Pamuk, Josef Rueschoff, Thomas Zander, Reinhard Buettner, Wolfgang Schröeder, Christiane Bruns, Heike Löser, Hakan Alakus, Alexander Quaas
Software Mentions: 3
Published: over 3 years ago

10.3390/genes11010046

Population Genomics of an Anadromous Hilsa Shad Tenualosa ilisha Species across Its Diverse Migratory Habitats: Discrimination by Fine-Scale Local Adaptation
Cited by: 14
Author(s): Md. Asaduzzaman, Yoji Igarashi, Abdul Wahab, Md. Nahiduzzaman, Jalilur Rahman, Michael J. Phillips, Songqian Huang, Shuichi Asakawa, Moshiur Rahman, Li Lian Wong
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12863-016-0363-8

Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants
Cited by: 66
Author(s): Terhi Iso-Touru, Goutam Sahana, Bernt Guldbrandtsen, Mogens Sandø Lund, Johanna Vilkki
Software Mentions: 3
Published: over 8 years ago

10.3390/biology9100315

Phenotypic Responses, Reproduction Mode and Epigenetic Patterns under Temperature Treatments in the Alpine Plant Species Ranunculus kuepferi (Ranunculaceae)
Cited by: 9
Author(s): Eleni Syngelaki, Mareike Daubert, Simone Klatt, Elvira Hörandl
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-016-0885-0

Deciphering transcriptional regulations coordinating the response to environmental changes
Cited by: 1
Author(s): Vicente Acuña, Andrés Aravena, Carito Guziołowski, Damien Eveillard, Anne Siegel, Alejandro Maass
Software Mentions: 3
Published: almost 9 years ago

10.1186/1471-230X-10-60

The Role of T cell PPAR γ in mice with experimental inflammatory bowel disease
Cited by: 68
Author(s): Amir J. Guri, Saroj Kant Mohapatra, William Horne, Raquel Hontecillas, Josep Bassaganya‐Riera
Software Mentions: 3
Published: over 14 years ago

10.1098/rsbl.2016.0432

Behavioural adaptations to flight into thin air
Cited by: 22
Author(s): Sherub Sherub, Gil Bohrer, Martin Wikelski, Rolf Weinzierl
Software Mentions: 3
Published: about 8 years ago

10.3390/ani10111943

Efficacy of Oxyclozanide and Closantel against Rumen Flukes (Paramphistomidae) in Naturally Infected Sheep
Cited by: 7
Author(s): David García-Dios, Pablo Díaz, M. Viña, Susana Remesar, Alberto Prieto, Gonzalo López-Lorenzo, José Manuel Díaz Cao, Rosario Panadero Fontán, P. Díez‐Baños, C. López
Software Mentions: 3
Published: about 4 years ago

10.1534/g3.119.400347

Genome-Wide Association and Gene Co-expression Network Analyses Reveal Complex Genetics of Resistance to Goss’s Wilt of Maize
Cited by: 2
Author(s): Amritpal Singh, Guangyong Li, Alex B. Brohammer, Diego Jarquín, Candice N. Hirsch, James R. Alfano, Aaron J. Lorenz
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pone.0008320

Applied Climate-Change Analysis: The Climate Wizard Tool
Cited by: 158
Author(s): Evan H. Girvetz, Chris Zganȷar, George T. Raber, Edwin P. Maurer, Peter Kareiva, Joshua J. Lawler
Software Mentions: 3
Published: almost 15 years ago

10.3389/fpubh.2020.00475

Characteristic of 523 COVID-19 in Henan Province and a Death Prediction Model
Cited by: 24
Author(s): Xiaoxu Ma, Ang Li, Mengfan Jiao, Qingmiao Shi, Xiaocai An, Yonghai Feng, Xing Liu, Hongxia Liang, Jiajun Chen, Huiling Li, Juan Li, Zhigang Ren, Ranran Sun, Guangying Cui, Yongjian Zhou, Ming Huei Cheng, Pengfei Jiao, Yu Wang, Jiyuan Xing, Shen Shen, Qingxian Zhang, Anding Xu, Zujiang Yu
Software Mentions: 3
Published: about 4 years ago

10.1534/g3.116.035873

First <i>in Vivo Batrachochytrium dendrobatidis</i> Transcriptomes Reveal Mechanisms of Host Exploitation, Host-Specific Gene Expression, and Expressed Genotype Shifts
Cited by: 21
Author(s): Amy Ellison, Graziella V. DiRenzo, Cait A. McDonald, Karen R. Lips, Kelly R. Zamudio
Software Mentions: 3
Published: almost 8 years ago

10.1186/1756-0381-2-3

Partitioning clustering algorithms for protein sequence data sets
Cited by: 17
Author(s): Sondès Fayech, Nadia Essoussi, Mohamed Limam
Software Mentions: 3
Published: over 15 years ago

10.1371/journal.pone.0245685

Brain organoid formation on decellularized porcine brain ECM hydrogels
Cited by: 44
Author(s): Robin Simsa, Theresa S.P. Rothenbücher, Hakan Gürbüz, Nidal Ghosheh, Jenny Emnéus, Lachmi Jenndahl, David L. Kaplan, Niklas Bergh, Alberto Martínez Serrano, Per Fogelstrand
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0141830

Discovery of Genome-Wide Microsatellite Markers in Scombridae: A Pilot Study on Albacore Tuna
Cited by: 5
Author(s): Natacha Nikolic, Stéphanie Duthoy, Antoine Destombes, Nathalie Bodin, Wendy West, Alexis Puech, Jérôme Bourjea
Software Mentions: 3
Published: about 9 years ago

10.3389/fpsyg.2016.00514

On the Development of Parafoveal Preprocessing: Evidence from the Incremental Boundary Paradigm
Cited by: 20
Author(s): Christina Marx, Florian Hutzler, Sarah Schuster, Stefan Hawelka
Software Mentions: 3
Published: over 8 years ago

10.1534/g3.117.300301

Whole-Genome Sequence Accuracy Is Improved by Replication in a Population of Mutagenized Sorghum
Cited by: 26
Author(s): Charles Addo‐Quaye, Mitch Tuinstra, Nicola Carraro, Clifford F. Weil, Brian P. Dilkes
Software Mentions: 3
Published: over 6 years ago

10.1186/1472-6874-12-9

Treatment of endometriosis in different ethnic populations: a meta-analysis of two clinical trials
Cited by: 28
Author(s): Christoph Gerlinger, Thomas Faustmann, Jeffrey J Hassall, Christian Seitz
Software Mentions: 3
Published: over 12 years ago

10.3389/fpls.2018.00066

The Dangers of Being a Small, Oligotrophic and Light Demanding Freshwater Plant across a Spatial and Historical Eutrophication Gradient in Southern Scandinavia
Cited by: 13
Author(s): Kaj Sand‐Jensen, Hans Henrik Bruun, Tora Finderup Nielsen, Ditte Marie Christiansen, Per Hartvig, Jens Chr. Schou, Lars Baastrup‐Spohr
Software Mentions: 3
Published: almost 7 years ago

10.3389/fpls.2016.01229

Differential Network Analysis Reveals Evolutionary Complexity in Secondary Metabolism of Rauvolfia serpentina over Catharanthus roseus
Cited by: 13
Author(s): Shivalika Pathania, Ganesh Bagler, Paramvir Singh Ahuja
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0095347

Identification of Gene Expression Changes from Colitis to CRC in the Mouse CAC Model
Cited by: 14
Author(s): Xin Li, Yuyan Gao, Ming Yang, Qi Zhao, Guangyu Wang, Yan Yang, Yue Yang, Hui Liu, Yanqiao Zhang
Software Mentions: 3
Published: over 10 years ago

10.3389/fpls.2021.654676

Transcriptome Analysis and RNA Interference Reveal GhGDH2 Regulating Cotton Resistance to Verticillium Wilt by JA and SA Signaling Pathways
Cited by: 14
Author(s): Xingjiang Xiong, Shichao Sun, Qian Zhu, Xinyu Zhang, Feng Liu, Yanjun Li, Fei Xue
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0165823

Transcriptome Profiling of the Phaseolus vulgaris - Colletotrichum lindemuthianum Pathosystem
Cited by: 37
Author(s): Bilal A. Padder, Kelvin Kamfwa, Halima E. Awale
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2017.01585

HvPap-1 C1A Protease Participates Differentially in the Barley Response to a Pathogen and an Herbivore
Cited by: 11
Author(s): Mercedes Díaz-Mendoza, Blanca Velasco-Arroyo, M. Estrella Santamaría, Isabel Dı́az, Manuel Martínez
Software Mentions: 3
Published: about 7 years ago

10.3389/fonc.2019.01144

Quantitative Spatial Analysis of Metabolic Heterogeneity Across in vivo and in vitro Tumor Models
Cited by: 18
Author(s): Tiffany M. Heaster, Bennett A. Landman, Melissa C. Skala
Software Mentions: 3
Published: about 5 years ago

10.3389/fphys.2020.576797

Physiological Tradeoffs of Immune Response Differs by Infection Type in Pieris napi
Cited by: 2
Author(s): Naomi Keehnen, Lucie Kučerová, Sören Nylin, Ulrich Theopold, Christopher W. Wheat
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13104-021-05729-y

XPolaris: an R-package to retrieve United States soil data at 30-meter resolution
Cited by: 3
Author(s): Luiz H. Moro Rosso, André Fróes de Borja Reis, Adrián A. Correndo, Ignacio A. Ciampitti
Software Mentions: 3
Published: about 3 years ago

10.3389/fonc.2021.705384

Wnt/β-Catenin Inhibition Disrupts Carboplatin Resistance in Isogenic Models of Triple-Negative Breast Cancer
Cited by: 16
Author(s): Willy Antoni Abreu de Oliveira, Stijn Moens, Youssef El Laithy, Bernard K. van der Veer, Paraskevi Athanasouli, Emanuela Elsa Cortesi, Maria Francesca Baietti, Kian Peng Koh, Juan-José Ventura, Frédéric Amant, Daniela Annibali, Frederic Lluı́s
Software Mentions: 3
Published: over 3 years ago

10.3389/fpls.2021.666342

Sorghum Pan-Genome Explores the Functional Utility for Genomic-Assisted Breeding to Accelerate the Genetic Gain
Cited by: 36
Author(s): Pradeep Ruperao, Nepolean Thirunavukkarasu, Prasad Gandham, Sivasubramani Selvanayagam, Mahalingam Govindaraj, Baloua Nebié, Eric Manyasa, Rajeev Gupta, Roma Rani Das, Damaris Achieng Odeny, Harish Gandhi, David Edwards, Santosh Deshpande, Abhishek Rathore
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0161135

Advanced Online Survival Analysis Tool for Predictive Modelling in Clinical Data Science
Cited by: 1
Author(s): Julio Montes-Torres, José Luis Subirats, Nuria Ribelles, Daniel Urda, Leonardo Franco, Emilio Alba, José M. Jerez
Software Mentions: 3
Published: over 8 years ago

10.1186/1472-6785-12-19

Contrasting habitat associations of imperilled endemic stream fishes from a global biodiversity hot spot
Cited by: 18
Author(s): Albert Chakona, Ernst R. Swartz
Software Mentions: 3
Published: almost 13 years ago

10.1186/s12859-016-0975-z

CoeViz: a web-based tool for coevolution analysis of protein residues
Cited by: 39
Author(s): Frazier N. Baker, Aleksey Porollo
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0126859

Increased Expression of Angiogenic and Inflammatory Proteins in the Vitreous of Patients with Ischemic Central Retinal Vein Occlusion
Cited by: 42
Author(s): Christoph Ehlken, Bastian Grundel, Daniel de Sousa Michels, Bernd Junker, Andreas Stahl, Günther Schlunck, Lutz L. Hansen, Nicolas Feltgen, Gottfried Martin, Hansjürgen Agostini, Amelie Pielen
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0113567

Movement Pattern Variability in Stone Knapping: Implications for the Development of Percussive Traditions
Cited by: 25
Author(s): Robert Rein, Tomomi Nonaka, Blandine Bril
Software Mentions: 3
Published: almost 10 years ago

Projects: pypi: package

Papers Mentioning package 1,300