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Projects: pypi: package

https://packages.ecosyste.ms/registries/pypi.org/packages/package

package is a package to package your package
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Latest release: over 15 years ago
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Science Score: 65/100
Starting Score: 100 points
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Very Likely Science (65)

Papers Mentioning package 1,300

10.1186/1471-2105-7-176
The Gaggle: An open-source software system for integrating bioinformatics software and data sources
Cited by: 149
Author(s): Paul Shannon, David J Reiss, Richard Bonneau, Nitin S. Baliga
Software Mentions: 4
Published: over 20 years ago
10.1038/s42003-020-0804-9
Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease
Cited by: 55
Author(s): Arlin Keo, Ahmed Mahfouz, Angela Ingrassia, Jean Pascal Meneboo, Céline Villenet, Eugénie Mutez, Thomas Comptdaer, Boudewijn P. F. Lelieveldt, Martin Figeac, Marie-Christine Chartier-Harlin, Wilma D. J. van de Berg, Jacobus J. van Hilten, Marcel J. T. Reinders
Software Mentions: 4
Published: over 6 years ago
10.1136/ard.2008.096172
Is the blood B-cell subset profile diagnostic for Sjögren syndrome?
Cited by: 72
Author(s): Aymeric Binard, Laëtitia Le Pottier, Valérie Devauchelle‐Pensec, Alain Saraux, Pierre Youinou, Jacques‐Olivier Pers
Software Mentions: 4
Published: about 18 years ago
10.1186/s12864-019-6021-6
Transcriptomics analysis revealing candidate genes and networks for sex differentiation of yesso scallop (Patinopecten yessoensis)
Cited by: 17
Author(s): Liqing Zhou, Zhihong Liu, Yan Dong, Xiujun Sun, Biao Wu, Tao Yu, Yao Zheng, Aiguo Yang, Qing Zhao, Dan Zhao
Software Mentions: 4
Published: about 7 years ago
10.7717/peerj.8421
Glycerophosphodiester phosphodiesterase 1 (GDE1) acts as a potential tumor suppressor and is a novel therapeutic target for non-mucin-producing colon adenocarcinoma
Cited by: 2
Author(s): Shen Qiu, Chen Lü, Hua Yang, Ming-Xia Ge, Wangxiao Xia, Qing‐Peng Kong, Gong‐Hua Li, Yanhong Gu
Software Mentions: 4
Published: over 6 years ago
10.15252/emmm.201708202
A proteomic network approach across the <scp>ALS</scp> ‐ <scp>FTD</scp> disease spectrum resolves clinical phenotypes and genetic vulnerability in human brain
Cited by: 115
Author(s): Mfon Umoh, Eric B. Dammer, Jingting Dai, Duc M. Duong, James J. Lah, Aĺlan I. Levey, Marla Gearing, Jonathan D. Glass, Nicholas T. Seyfried
Software Mentions: 4
Published: almost 9 years ago
10.1371/journal.pone.0169234
Genome-Wide Association Mapping and Genomic Selection for Alfalfa (Medicago sativa) Forage Quality Traits
Cited by: 94
Author(s): Elisa Biazzi, Nelson Espinoza N., L. Pecetti, E. Charles Brummer, Alberto Palmonari, Aldo Tava, Paolo Annicchiarico
Software Mentions: 4
Published: over 9 years ago
10.1371/journal.pone.0142707
State-Space Modelling of the Drivers of Movement Behaviour in Sympatric Species
Cited by: 12
Author(s): F. Javier Pérez‐Barbería, Michael Small, R. J. Hooper, A. Aldezábal, Ramón C. Soriguer-Escofet, George S. Bakken, Iain J. Gordon
Software Mentions: 4
Published: almost 11 years ago
10.1371/journal.pone.0192401
High intra-specific variation in avian body condition responses to climate limits generalisation across species
Cited by: 22
Author(s): Nina McLean, Henk P. van der Jeugd, Martijn van de Pol
Software Mentions: 4
Published: over 8 years ago
10.1371/journal.pone.0241057
Diversity and structural differences of bacterial microbial communities in rhizocompartments of desert leguminous plants
Cited by: 8
Author(s): Ziyuan Zhou, Minghan Yu, Guodong Ding, Guanglei Gao, Yingying He
Software Mentions: 4
Published: over 5 years ago
10.1186/s12864-019-5667-4
Postovulatory maternal transcriptome in Atlantic salmon and its relation to developmental potential of embryos
Cited by: 8
Author(s): Teshome Tilahun Bizuayehu, Maren Mommens, Arvind Sundaram, Anusha K. S. Dhanasiri, Igor Babiak
Software Mentions: 4
Published: over 7 years ago
10.1186/s12859-020-3465-2
PathME: pathway based multi-modal sparse autoencoders for clustering of patient-level multi-omics data
Cited by: 33
Author(s): Amina Lemsara, Salima Ouadfel, Holger Fröhlich
Software Mentions: 4
Published: over 6 years ago
10.3390/genes12070952
Identification of Key Metabolic Pathways and Biomarkers Underlying Flowering Time of Guar (Cyamopsis tetragonoloba (L.) Taub.) via Integrated Transcriptome-Metabolome Analysis
Cited by: 4
Author(s): Elizaveta Grigoreva, А.А. Ткаченко, Serafima Arkhimandritova, Aleksandar Beatovic, Pavel Ulianich, В. А. Волков, Dmitry Karzhaev, Cécile Ben, Laurent Gentzbittel, Elena Potokina
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pone.0219981
Pathogen invasion history elucidates contemporary host pathogen dynamics
Cited by: 14
Author(s): Vance T. Vredenburg, Samuel V. G. McNally, Hasan Sulaeman, Helen Butler, Tiffany A. Yap, Michelle S. Koo, Dirk S. Schmeller, Celeste Dodge, Tina L. Cheng, Gordon Lau, Cheryl J. Briggs
Software Mentions: 4
Published: almost 7 years ago
10.1186/1471-2164-11-138
Escherichia coli infection induces distinct local and systemic transcriptome responses in the mammary gland
Cited by: 114
Author(s): Simone Mitterhuemer, Wolfram Petzl, Stefan Krebs, Daniel Mehne, Andrea Klanner, Eckhard Wolf, Holm Zerbe, Helmut Blum
Software Mentions: 4
Published: over 16 years ago
10.3758/s13420-017-0260-7
Optimisation of cognitive performance in rodent operant (touchscreen) testing: Evaluation and effects of reinforcer strength
Cited by: 25
Author(s): Benjamin U. Phillips, Christopher Heath, Zofia Ossowska, Timothy J. Bussey, Lisa M. Saksida
Software Mentions: 4
Published: over 9 years ago
10.3390/nu12123858
Effects of Daily Raspberry Consumption on Immune-Metabolic Health in Subjects at Risk of Metabolic Syndrome: A Randomized Controlled Trial
Cited by: 18
Author(s): Maximilien Franck, Juan de Toro‐Martín, Véronique Garneau, Valérie Guay, Michèle Kearney, Geneviève Pilon, Denis Roy, Patrick Couture, Charles Couillard, André Marette, Marie‐Claude Vohl
Software Mentions: 4
Published: over 5 years ago
10.3390/nu11051032
Plasma Metabolites Associated with Coffee Consumption: A Metabolomic Approach within the PREDIMED Study
Cited by: 15
Author(s): Christopher Papandreou, Pablo Hernández‐Alonso, Mònica Bulló, Miguel Ruiz‐Canela, Edward Yu, Marta Guasch‐Ferré, Estefanía Toledo, Courtney Dennis, Amy Deik, Clary B. Clish, Cristina Razquín, Dolores Corella, Ramón Estruch, Emilio Ros, Montserrat Fitó, Fernando Arós, Miquel Fiol, José Lapetra, Cristina Ruano, Liming Liang, Miguel Ángel Martínez‐González, Frank B. Hu, Jordi Salas‐Salvadó
Software Mentions: 4
Published: over 7 years ago
10.18632/oncotarget.19642
Exome sequencing analysis of murine medulloblastoma models identifies WDR11 as a potential tumor suppressor in Group 3 tumors
Cited by: 8
Author(s): Lei Wei, Brian L. Murphy, Gang Wu, Matthew Parker, John Easton, Richard J. Gilbertson, Jinghui Zhang, Martine F. Roussel
Software Mentions: 4
Published: about 9 years ago
10.18632/oncotarget.24898
Long noncoding RNAs are associated with metabolic and cellular processes in the jejunum mucosa of pre-weaning calves in response to different diets
Cited by: 17
Author(s): Rosemarie Weikard, Frieder Hadlich, H.M. Hammon, D. Frieten, C. Gerbert, Christian Koch, G. Dusel, Christa Kühn
Software Mentions: 4
Published: over 8 years ago
10.18632/oncotarget.9721
<i>KCNN4</i>and<i>S100A14</i>act as predictors of recurrence in optimally debulked patients with serous ovarian cancer
Cited by: 26
Author(s): Hongbo Zhao, Ensong Guo, Ting Hu, Qian Sun, Jiankang Wu, Xingguang Lin, Danfeng Luo, Chaoyang Sun, Changyu Wang, Bo Zhou, Na Li, Meng Xia, Hao Lü, Meng Li, Xiaoyan Xu, Junbo Hu, Ding Ma, Gang Chen, Tao Zhu
Software Mentions: 4
Published: over 10 years ago
10.1186/s12864-021-07416-5
Transcriptome analysis and molecular mechanism of linseed (Linum usitatissimum L.) drought tolerance under repeated drought using single-molecule long-read sequencing
Cited by: 20
Author(s): Wei Wang, Lei Wang, Ling Wang, Mingqian Tan, Collins Ogutu, Ziyan Yin, Jian Zhou, Jiaomei Wang, Lijun Wang, Xin Yan
Software Mentions: 4
Published: over 5 years ago
10.1111/acel.13195
Growth differentiation factor 15 protects against the aging‐mediated systemic inflammatory response in humans and mice
Cited by: 59
Author(s): Ji Sun Moon, Ludger Goeminne, Jung Tae Kim, Jing Tian, Seok Hwan Kim, Ha Thi Nga, Sun Hyung Kang, Baeki E. Kang, Jin Seok Byun, Young‐Sun Lee, Jae‐Han Jeon, Minho Shong, Johan Auwerx, Dongryeol Ryu, Hyon‐Seung Yi
Software Mentions: 4
Published: about 6 years ago
10.3390/nu12072147
A Comprehensive Evaluation of the Impact of Bovine Milk Containing Different Beta-Casein Profiles on Gut Health of Ageing Mice
Cited by: 22
Author(s): Barbara Guantario, Marzia Giribaldi, Chiara Devirgiliis, Alberto Finamore, Elena Colombino, Maria Teresa Capucchio, Rocchina Evangelista, Vincenzo Motta, Paola Zinno, Simona Cirrincione, Sara Antoniazzi, Laura Cavallarin, Marianna Roselli
Software Mentions: 4
Published: about 6 years ago
10.3390/ijms22052679
Sperm Methylome Profiling Can Discern Fertility Levels in the Porcine Biomedical Model
Cited by: 15
Author(s): Fábio Pértille, Manuel Álvarez‐Rodríguez, Arthur Nery da Silva, Isabel Barranco, Jordi Roca, Carlos Guerrero-Bosagna, Heriberto Rodríguez-Martinez
Software Mentions: 4
Published: over 5 years ago
10.3390/ijms21239211
Transcriptomic Leaf Profiling Reveals Differential Responses of the Two Most Traded Coffee Species to Elevated [CO2]
Cited by: 10
Author(s): Isabel Marques, Isabel Fernandes, Pedro Henrique Chorão David, Octávio S. Paulo, Luís F. Goulão, Ana S. Fortunato, Fernando C. Lidon, Fábio M. DaMatta, José C. Ramalho, Ana I. Ribeiro‐Barros
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12864-017-3944-7
Genome-wide signals of positive selection in strongylocentrotid sea urchins
Cited by: 11
Author(s): Kord M. Kober, Grant H. Pogson
Software Mentions: 4
Published: about 9 years ago
10.1111/tpj.14299
Hybrid sequencing reveals insight into heat sensing and signaling of bread wheat
Cited by: 46
Author(s): Xiaoming Wang, Siyuan Chen, Song Xue, Danni Liu, Peng Zhao, Yunze Lu, Yanbing Cheng, Zhenshan Liu, Xiaojun Nie, Weining Song, Qixin Sun, Shengbao Xu, Chuang Ma
Software Mentions: 4
Published: over 7 years ago
10.3390/genes11020216
Repetitive DNA Restructuring Across Multiple Nicotiana Allopolyploidisation Events Shows a Lack of Strong Cytoplasmic Bias in Influencing Repeat Turnover
Cited by: 6
Author(s): Steven Dodsworth, Maïté S. Guignard, Oscar Alejandro Pérez‐Escobar, Monika Struebig, Mark W. Chase, Andrew R. Leitch
Software Mentions: 4
Published: over 6 years ago
10.3390/ijms21082966
Differential Expression and Function of Bicellular Tight Junctions in Skin and Oral Wound Healing
Cited by: 20
Author(s): Trevor R. Leonardo, Junhe Shi, Dandan Chen, Harsh M. Trivedi, Lin Chen
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pone.0208263
QTM: Computational package using MPI protocol for Quantum Trajectories Method
Cited by: 1
Author(s): Marek Sawerwain, Joanna Wiśniewska
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pgen.1005869
The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster
Cited by: 44
Author(s): Nicolas Svetec, Julie M. Cridland, Li Zhao, David J. Begun
Software Mentions: 4
Published: over 10 years ago
10.3389/fpls.2021.670302
CRISPR/Cas9-Induced Loss-of-Function Mutation in the Barley Mitogen-Activated Protein Kinase 6 Gene Causes Abnormal Embryo Development Leading to Severely Reduced Grain Germination and Seedling Shootless Phenotype
Cited by: 8
Author(s): Pavel Křenek, Elizaveta Chubar, Pavol Vadovič, Ludmila Ohnoutková, Tomáš Vlčko, Véronique Bergougnoux, Petr Cápal, Miroslav Ovečka, Jozef Šamaj
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pntd.0005568
Detecting the impact of temperature on transmission of Zika, dengue, and chikungunya using mechanistic models
Cited by: 387
Author(s): Erin A. Mordecai, Jeremy M. Cohen, Michelle V. Evans, Prithvi Gudapati, Leah R. Johnson, Catherine A. Lippi, Kerri L. Miazgowicz, Courtney C. Murdock, Jason R. Rohr, Sadie J. Ryan, Van M. Savage, Marta S. Shocket, Anna Stewart Ibarra, Matthew B. Thomas, Daniel P. Weikel
Software Mentions: 4
Published: over 9 years ago
10.1371/journal.pntd.0008945
Multi-locus genotyping reveals established endemicity of a geographically distinct Plasmodium vivax population in Mauritania, West Africa
Cited by: 7
Author(s): Hampaté Bâ, Sarah Auburn, Christopher G Jacob, Sónia Gonçalves, Craig W. Duffy, Lindsay B. Stewart, Ric N. Price, Yacine Boubou Deh, M. Diallo, Abderahmane Tandia, Dominic Kwiatkowski, David J. Conway
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2016.02067
Fine Spatial Scale Variation of Soil Microbial Communities under European Beech and Norway Spruce
Cited by: 72
Author(s): Heiko Nacke, Kezia Goldmann, Ingo Schöning, Birgit Pfeiffer, Kristin Kaiser, Genis Castillo-Villamizar, Marion Schrumpf, François Buscot, Rolf Daniel, Tesfaye Wubet
Software Mentions: 4
Published: over 9 years ago
10.1371/journal.pcbi.1003480
GAGA: A New Algorithm for Genomic Inference of Geographic Ancestry Reveals Fine Level Population Substructure in Europeans
Cited by: 9
Author(s): Oscar Lao, Fan Liu, Andreas Wollstein, Manfred Kayser
Software Mentions: 4
Published: over 12 years ago
10.3389/fpls.2019.00010
Flavonol Profile Is a Reliable Indicator to Assess Canopy Architecture and the Exposure of Red Wine Grapes to Solar Radiation
Cited by: 67
Author(s): Johann Martínez‐Lüscher, Luca Brillante, S. Kaan Kurtural
Software Mentions: 4
Published: over 7 years ago
10.3389/fgene.2019.00439
Whole-Exome Sequencing Identifies Somatic Mutations Associated With Mortality in Metastatic Clear Cell Kidney Carcinoma
Cited by: 17
Author(s): Alejandro Mendoza-Álvarez, Beatriz Guillén‐Guío, Adrian Baez‐Ortega, Carolina Hernandez-Perez, Sita Lakhwani-Lakhwani, María-del-Carmen Maeso, José M. Lorenzo-Salazar, Manuel Morales, Carlos Flores
Software Mentions: 4
Published: over 7 years ago
10.3389/fgene.2021.634554
Molecular Mapping of Water-Stress Responsive Genomic Loci in Lettuce (Lactuca spp.) Using Kinetics Chlorophyll Fluorescence, Hyperspectral Imaging and Machine Learning
Cited by: 9
Author(s): Pawan Kumar, Renée L. Eriksen, Ivan Šimko, Beiquan Mou
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0172829
Small rodents as paratenic or intermediate hosts of carnivore parasites in Berlin, Germany
Cited by: 27
Author(s): Jürgen Krücken, Julia Blümke, Denny Maaz, Janina Demeler, Sabrina Ramünke, Daniela Antolová, Roland Schaper, Georg von Samson‐Himmelstjerna
Software Mentions: 4
Published: over 9 years ago
10.1371/journal.pone.0140815
Somatic Variation of T-Cell Receptor Genes Strongly Associate with HLA Class Restriction
Cited by: 23
Author(s): Paul L. Klarenbeek, Marieke E. Doorenspleet, Rebecca E. E. Esveldt, Barbera D. C. van Schaik, Neubury M. Lardy, Antoine H. C. van Kampen, Paul P. Tak, Robert M. Plenge, Frank Baas, Paul I. W. de Bakker, Niek de Vries
Software Mentions: 4
Published: almost 11 years ago
10.1534/g3.119.400336
A Bayesian Genomic Multi-output Regressor Stacking Model for Predicting Multi-trait Multi-environment Plant Breeding Data
Cited by: 20
Author(s): Osval A. Montesinos-L֯ópez, Abelardo Montesinos‐López, J. Crossa, Jaime Cuevas, J. Cricelio Montesinos-López, Zitlalli Salas Gutiérrez, Morten Lillemo, Philomin Juliana, Ravi P. Singh
Software Mentions: 4
Published: almost 7 years ago
10.1371/journal.pone.0231125
Analysis of circulating-microRNA expression in lactating Holstein cows under summer heat stress
Cited by: 14
Author(s): Jihwan Lee, Mi Kyung Lee, Jun-Kyu Son, Hyeonju Lim, Euntae Kim, Dong-Hyun Kim, Seungmin Ha, Tai-Young Hur, Seung Hwan Lee, Inchul Choi
Software Mentions: 4
Published: about 6 years ago
10.3389/fmicb.2014.00752
Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage
Cited by: 58
Author(s): Björn Breidenbach, Ralf Conrad
Software Mentions: 4
Published: over 11 years ago
10.1371/journal.pone.0247055
Statistical meta-analysis to investigate the association between the Interleukin-6 (IL-6) gene polymorphisms and cancer risk
Cited by: 16
Author(s): Md. Harun-Or-Roshid, Md. Borqat Ali, Jesmin, Md. Nurul Haque Mollah
Software Mentions: 4
Published: over 5 years ago
10.3389/fonc.2021.701500
Development and Validation of a Radiosensitivity Prediction Model for Lower Grade Glioma Based on Spike-and-Slab Lasso
Cited by: 3
Author(s): Zixuan Du, Shang Cai, Derui Yan, Huijun Li, Xinyan Zhang, Wei Yang, Jianping Cao, Nengjun Yi, Zaixiang Tang
Software Mentions: 4
Published: about 5 years ago
10.3389/fonc.2021.634569
Sharp Downregulation of Hub Genes Associated With the Pathogenesis of Breast Cancer From Ductal Carcinoma In Situ to Invasive Ductal Carcinoma
Cited by: 4
Author(s): Yao Wang, Faqing Liang, Yuting Zhou, Juanjuan Qiu, Qing Lv, Zhenggui Du
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0180236
An adjustable predictive score of graft survival in kidney transplant patients and the levels of risk linked to de novo donor-specific anti-HLA antibodies
Cited by: 14
Author(s): Aurélie Prémaud, Matthieu Filloux, Philippe Gatault, Antoine Thierry, Matthias Büchler, E Munteanu, Pierre Marquet, Marie Essig, Annick Rousseau
Software Mentions: 4
Published: about 9 years ago
10.3389/fonc.2020.571655
Identification and Validation of a Novel Six-Gene Prognostic Signature of Stem Cell Characteristic in Colon Cancer
Cited by: 17
Author(s): Liang Yue, Shijie Qi, Xin Wu
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0223031
Lipidomics analysis of juveniles’ blue mussels (Mytilus edulis L. 1758), a key economic and ecological species
Cited by: 13
Author(s): Vincenzo Alessandro Laudicella, Christine Beveridge, Stefano Carboni, Sofia C. Franco, Mary K. Doherty, Nina Long, Elaine Mitchell, Michele S. Stanley, Phillip D. Whitfield, Adam D. Hughes
Software Mentions: 4
Published: over 6 years ago
10.3389/fonc.2020.560229
A Molecular Subtype Model for Liver HBV-Related Hepatocellular Carcinoma Patients Based on Immune-Related Genes
Cited by: 5
Author(s): Qiyao Zhang, Xiao Yu, Qingyuan Zheng, Yuting He, Wenzhi Guo
Software Mentions: 4
Published: almost 6 years ago
10.1371/journal.pgen.1008181
Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals
Cited by: 101
Author(s): Shira Perez, Antony Kaspi, Tom Domovitz, Ateret Davidovich, Anat Lavi-Itzkovitz, Tomer Meirson, Jacinta A Holmes, Chia Yen Dai, Chung Feng Huang, Raymond T. Chung, Nimer Assy, Assam El‐Osta, Gur Yaari, Salomon M. Stemmer, Ming‐Lung Yu, Izhak Haviv, Meital Gal-Tanamy
Software Mentions: 4
Published: about 7 years ago
10.1371/journal.pone.0231759
Links between the rumen microbiota, methane emissions and feed efficiency of finishing steers offered dietary lipid and nitrate supplementation
Cited by: 19
Author(s): J M Bowen, Paul Cormican, S.J. Lister, Matthew S. McCabe, Carol-Anne Duthie, R. Roehe, Richard J. Dewhurst
Software Mentions: 4
Published: over 6 years ago
10.3389/fmicb.2020.01686
Soil Fungal Communities Investigated by Metabarcoding Within Simulated Forensic Burial Contexts
Cited by: 11
Author(s): Noemi Procopio, Stefano Ghignone, Samuele Voyron, Marco Chiapello, Anna Williams, Andrew Chamberlain, Antonietta Mello, Michael Buckley
Software Mentions: 4
Published: about 6 years ago
10.3389/fimmu.2021.644838
High Resolution Haplotype Analyses of Classical HLA Genes in Families With Multiple Sclerosis Highlights the Role of HLA-DP Alleles in Disease Susceptibility
Cited by: 4
Author(s): Kazutoyo Osoegawa, Lisa E. Creary, Gonzalo Montero-Martín, Kalyan C. Mallempati, Sridevi Gangavarapu, Stacy J. Caillier, Adam Santaniello, Noriko Isobe, Jill A. Hollenbach, Stephen L. Hauser, Jorge R. Oksenberg, Marcelo Fernández-Viña
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2018.02668
Ancestrality and Mosaicism of Giant Viruses Supporting the Definition of the Fourth TRUC of Microbes
Cited by: 41
Author(s): Philippe Colson, Anthony Levasseur, Bernard La Scola, Vikas Sharma, Arshan Nasir, Pierre Pontarotti, Gustavo Caetano‐Anollés, Didier Raoult
Software Mentions: 3
Published: almost 8 years ago
10.1371/journal.pone.0199461
A common molecular signature of patients with sickle cell disease revealed by microarray meta-analysis and a genome-wide association study
Cited by: 10
Author(s): Cherif Ben Hamda, Raphael Zozimus Sangeda, Liberata Mwita, Ayton Meintjes, Siana Nkya, Sumir Panji, Nicola Mulder, Lamia Guizani-Tabbane, Alia Benkahla, Julie Makani, Kaïs Ghedira
Software Mentions: 3
Published: about 8 years ago
10.1371/journal.pone.0210321
Population genetic structure of the Mediterranean horseshoe bat Rhinolophus euryale in the central Balkans
Cited by: 10
Author(s): İvana Budinski, Jelena Blagojević, Vladimir Jovanović, Branka Pejić, Tanja Adnađević, Milan Paunović, Mladen Vujošević
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0079035
Microbial Community Functional Change during Vertebrate Carrion Decomposition
Cited by: 132
Author(s): Jennifer L. Pechal, Tawni L. Crippen, Aaron M. Tarone, A. J. Lewis, Jeffery K. Tomberlin, M. Eric Benbow
Software Mentions: 3
Published: almost 13 years ago
10.3389/fmolb.2020.598221
ANTXR1 Is a Prognostic Biomarker and Correlates With Stromal and Immune Cell Infiltration in Gastric Cancer
Cited by: 9
Author(s): Xiaodong Huang, Jie Zhang, Yongbin Zheng
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pgen.1008840
The kinase Isr1 negatively regulates hexosamine biosynthesis in S. cerevisiae
Cited by: 3
Author(s): Emma B Alme, Erica Stevenson, Nevan J. Krogan, Danielle L. Swaney, David P. Toczyski
Software Mentions: 3
Published: about 6 years ago
10.3389/fonc.2021.705384
Wnt/β-Catenin Inhibition Disrupts Carboplatin Resistance in Isogenic Models of Triple-Negative Breast Cancer
Cited by: 16
Author(s): Willy Antoni Abreu de Oliveira, Stijn Moens, Youssef El Laithy, Bernard K. van der Veer, Paraskevi Athanasouli, Emanuela Elsa Cortesi, Maria Francesca Baietti, Kian Peng Koh, Juan-José Ventura, Frédéric Amant, Daniela Annibali, Frederic Lluı́s
Software Mentions: 3
Published: about 5 years ago
10.3389/fonc.2019.01144
Quantitative Spatial Analysis of Metabolic Heterogeneity Across in vivo and in vitro Tumor Models
Cited by: 18
Author(s): Tiffany M. Heaster, Bennett A. Landman, Melissa C. Skala
Software Mentions: 3
Published: almost 7 years ago
10.3389/fphys.2020.576797
Physiological Tradeoffs of Immune Response Differs by Infection Type in Pieris napi
Cited by: 2
Author(s): Naomi Keehnen, Lucie Kučerová, Sören Nylin, Ulrich Theopold, Christopher W. Wheat
Software Mentions: 3
Published: over 5 years ago
10.3389/fpls.2017.01585
HvPap-1 C1A Protease Participates Differentially in the Barley Response to a Pathogen and an Herbivore
Cited by: 11
Author(s): Mercedes Díaz-Mendoza, Blanca Velasco-Arroyo, M. Estrella Santamaría, Isabel Dı́az, Manuel Martínez
Software Mentions: 3
Published: almost 9 years ago
10.1371/journal.pone.0251199
Impacts of California Proposition 47 on crime in Santa Monica, California
Cited by: 2
Author(s): Jennifer Crodelle, Celeste Vallejo, Markus Schmidtchen, Chad M. Topaz, Maria R. D'Orsogña
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pmed.1003062
Evaluating the relationship between circulating lipoprotein lipids and apolipoproteins with risk of coronary heart disease: A multivariable Mendelian randomisation analysis
Cited by: 371
Author(s): Tom G Richardson, Eleanor Sanderson, Tom Palmer, Mika Ala‐Korpela, Brian А. Ference, George Davey Smith, Michael V Holmes
Software Mentions: 3
Published: over 6 years ago
10.3389/fpls.2018.00066
The Dangers of Being a Small, Oligotrophic and Light Demanding Freshwater Plant across a Spatial and Historical Eutrophication Gradient in Southern Scandinavia
Cited by: 13
Author(s): Kaj Sand‐Jensen, Hans Henrik Bruun, Tora Finderup Nielsen, Ditte Marie Christiansen, Per Hartvig, Jens Chr. Schou, Lars Baastrup‐Spohr
Software Mentions: 3
Published: over 8 years ago
10.3389/fpls.2016.01229
Differential Network Analysis Reveals Evolutionary Complexity in Secondary Metabolism of Rauvolfia serpentina over Catharanthus roseus
Cited by: 13
Author(s): Shivalika Pathania, Ganesh Bagler, Paramvir Singh Ahuja
Software Mentions: 3
Published: about 10 years ago
10.3389/fpls.2021.654676
Transcriptome Analysis and RNA Interference Reveal GhGDH2 Regulating Cotton Resistance to Verticillium Wilt by JA and SA Signaling Pathways
Cited by: 14
Author(s): Xingjiang Xiong, Shichao Sun, Qian Zhu, Xinyu Zhang, Feng Liu, Yanjun Li, Fei Xue
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pmed.1003765
Impact of color-coded and warning nutrition labelling schemes: A systematic review and network meta-analysis
Cited by: 62
Author(s): Jieqiong Song, Mhairi K. Brown, Monique Tan, Graham A. MacGregor, Jacqui Webster, Norm R.C. Campbell, Kathy Trieu, Cliona Ní Mhurchú, Laura K. Cobb, Feng J He
Software Mentions: 3
Published: almost 5 years ago
10.3389/fpls.2021.666342
Sorghum Pan-Genome Explores the Functional Utility for Genomic-Assisted Breeding to Accelerate the Genetic Gain
Cited by: 36
Author(s): Pradeep Ruperao, Nepolean Thirunavukkarasu, Prasad Gandham, Sivasubramani Selvanayagam, Mahalingam Govindaraj, Baloua Nebié, Eric Manyasa, Rajeev Gupta, Roma Rani Das, Damaris Achieng Odeny, Harish Gandhi, David Edwards, Santosh Deshpande, Abhishek Rathore
Software Mentions: 3
Published: over 5 years ago
10.3389/fpls.2020.00042
Suitability of Single-Nucleotide Polymorphism Arrays Versus Genotyping-By-Sequencing for Genebank Genomics in Wheat
Cited by: 24
Author(s): Jianting Chu, Yusheng Zhao, Sebastian Beier, Albert W. Schulthess, Nils Stein, Norman Philipp, Marion S. Röder, Jochen C. Reif
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0136047
Intraspecific Phenotypic Variation and Morphological Divergence of Strains of Folsomia candida (Willem) (Collembola: Isotomidae), the "Standard" Test Springtaill
Cited by: 11
Author(s): Thomas N. Tully, Mikhail Potapov
Software Mentions: 3
Published: almost 11 years ago
10.1371/journal.pntd.0008131
Potential distributions of Bacillus anthracis and Bacillus cereus biovar anthracis causing anthrax in Africa
Cited by: 26
Author(s): Daniel Romero-Álvarez, A. Townsend Peterson, Johanna S. Salzer, Claudia Pittiglio, Sean V. Shadomy, Rita M. Traxler, Antonio Vieira, William A. Bower, Henry Walke, Lindsay P. Campbell
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0093625
Refining Reproductive Parameters for Modelling Sustainability and Extinction in Hunted Primate Populations in the Amazon
Cited by: 13
Author(s): Mark Bowler, Matthew Anderson, Daniel Montes, Pedro Enrique Pérez, Pedro Mayor
Software Mentions: 3
Published: over 12 years ago
10.3389/fpsyg.2016.00514
On the Development of Parafoveal Preprocessing: Evidence from the Incremental Boundary Paradigm
Cited by: 20
Author(s): Christina Marx, Florian Hutzler, Sarah Schuster, Stefan Hawelka
Software Mentions: 3
Published: over 10 years ago
10.3389/fpubh.2020.00475
Characteristic of 523 COVID-19 in Henan Province and a Death Prediction Model
Cited by: 24
Author(s): Xiaoxu Ma, Ang Li, Mengfan Jiao, Qingmiao Shi, Xiaocai An, Yonghai Feng, Xing Liu, Hongxia Liang, Jiajun Chen, Huiling Li, Juan Li, Zhigang Ren, Ranran Sun, Guangying Cui, Yongjian Zhou, Ming Huei Cheng, Pengfei Jiao, Yu Wang, Jiyuan Xing, Shen Shen, Qingxian Zhang, Anding Xu, Zujiang Yu
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0131075
Regional Variation in Parasite Species Richness and Abundance in the Introduced Range of the Invasive Lionfish, Pterois volitans
Cited by: 29
Author(s): Andrew J. Sellers, Gregory M. Ruiz, Brian Leung, Mark E. Torchin
Software Mentions: 3
Published: about 11 years ago
10.1534/g3.116.035873
First <i>in Vivo Batrachochytrium dendrobatidis</i> Transcriptomes Reveal Mechanisms of Host Exploitation, Host-Specific Gene Expression, and Expressed Genotype Shifts
Cited by: 21
Author(s): Amy Ellison, Graziella V. DiRenzo, Cait A. McDonald, Karen R. Lips, Kelly R. Zamudio
Software Mentions: 3
Published: over 9 years ago
10.1534/g3.117.300301
Whole-Genome Sequence Accuracy Is Improved by Replication in a Population of Mutagenized Sorghum
Cited by: 26
Author(s): Charles Addo‐Quaye, Mitch Tuinstra, Nicola Carraro, Clifford F. Weil, Brian P. Dilkes
Software Mentions: 3
Published: over 8 years ago
10.1534/g3.119.400347
Genome-Wide Association and Gene Co-expression Network Analyses Reveal Complex Genetics of Resistance to Goss’s Wilt of Maize
Cited by: 2
Author(s): Amritpal Singh, Guangyong Li, Alex B. Brohammer, Diego Jarquín, Candice N. Hirsch, James R. Alfano, Aaron J. Lorenz
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0254359
Anatomy into the battle of supporting or opposing reopening amid the COVID-19 pandemic on Twitter: A temporal and spatial analysis
Cited by: 12
Author(s): Lingyao Li, Abdolmajid Erfani, Yu Wang, Qingbin Cui
Software Mentions: 3
Published: about 5 years ago
10.1007/s10120-021-01195-4
Optimized PD-L1 scoring of gastric cancer
Cited by: 21
Author(s): Birgid Schoemig-Markiefka, Jana Eschbach, Andreas H. Scheel, Aylin Pamuk, Josef Rueschoff, Thomas Zander, Reinhard Buettner, Wolfgang Schröeder, Christiane Bruns, Heike Löser, Hakan Alakus, Alexander Quaas
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0073056
Metagenomic Predictions: From Microbiome to Complex Health and Environmental Phenotypes in Humans and Cattle
Cited by: 96
Author(s): Elizabeth M. Ross, Peter J. Moate, L. C. Marett, Ben Cocks, Ben J. Hayes
Software Mentions: 3
Published: about 13 years ago
10.1371/journal.pone.0182533
A survey of the mycobiota associated with larvae of the black soldier fly (Hermetia illucens) reared for feed production
Cited by: 73
Author(s): Ilaria Varotto-Boccazzi, M. Ottoboni, Elena Martín, Francesco Comandatore, L. Vallone, Thomas Spranghers, Mia Eeckhout, Valeria Mereghetti, L. Pinotti, Sara Epis
Software Mentions: 3
Published: about 9 years ago
10.1371/journal.pone.0193301
Association of whole blood n-6 fatty acids with stunting in 2-to-6-year-old Northern Ghanaian children: A cross-sectional study
Cited by: 17
Author(s): Mary Adjepong, C. Austin Pickens, Raghav Jain, William S. Harris, Reginald Adjetey Annan, Jenifer I. Fenton
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0114047
Statistical Modeling of the Abundance of Vectors of West African Rift Valley Fever in Barkédji, Senegal
Cited by: 19
Author(s): Cheikh Talla, Diawo Diallo, Ibrahima Dia, Yamar Bâ, Jacques André Ndione, Amadou Alpha Sall, Andrew P. Morse, Aliou Diop, Mawlouth Diallo
Software Mentions: 3
Published: almost 12 years ago
10.1371/journal.pone.0080540
Association Testing Strategy for Data from Dense Marker Panels
Cited by: 1
Author(s): Donghyung Lee, Silviu‐Alin Bacanu
Software Mentions: 3
Published: almost 13 years ago
10.1371/journal.pone.0166586
Cohesion and Coalition Formation in the European Parliament: Roll-Call Votes and Twitter Activities
Cited by: 32
Author(s): Darko Cherepnalkoski, Andreas Karpf, Igor Mozetič, Miha Grčar
Software Mentions: 3
Published: almost 10 years ago
10.1371/journal.pone.0059927
Pyrosequencing Reveals High-Temperature Cellulolytic Microbial Consortia in Great Boiling Spring after In Situ Lignocellulose Enrichment
Cited by: 39
Author(s): Joseph P. Peacock, Jesse Cole, Senthil K. Murugapiran, Jeremy A. Dodsworth, James S. Fisher, Duane P. Moser, Brian P. Hedlund
Software Mentions: 3
Published: over 13 years ago
10.1371/journal.pone.0123009
Parasite Load Induces Progressive Spleen Architecture Breakage and Impairs Cytokine mRNA Expression in Leishmania infantum-Naturally Infected Dogs
Cited by: 50
Author(s): Amanda dos Santos Cavalcanti, Marcelo Ribeiro-Alves, Luiza de Oliveira Ramos Pereira, Gustavo Leandro da Cruz Mestre, Anna Beatriz Robottom Ferreira, Fernanda Nazaré Morgado, Mariana Côrtes Boité, Elisa Cupolillo, Milton Ozório Moraes, Renato Porrozzi
Software Mentions: 3
Published: over 11 years ago
10.3389/fgene.2020.00429
Construction and Validation of a 13-Gene Signature for Prognosis Prediction in Medulloblastoma
Cited by: 3
Author(s): L. Chang, Han Zou, Zujian Xiong, Yi Xiong, Danielle F Miyagishima, Siyi Wanggou, Xuejun Li
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pgen.1002565
Tcf7 Is an Important Regulator of the Switch of Self-Renewal and Differentiation in a Multipotential Hematopoietic Cell Line
Cited by: 92
Author(s): Jia Qian Wu, Montrell Seay, Vincent P. Schulz, Manoj Hariharan, David Tuck, Lian Jin, Jie Du, Minyi Shi, Zhijia Ye, Mark Gerstein, M Snyder, Sherman M. Weissman
Software Mentions: 3
Published: over 14 years ago
10.3389/fgene.2021.657051
Identification and Validation of an Immune-Related eRNA Prognostic Signature for Hepatocellular Carcinoma
Cited by: 10
Author(s): Shenglan Cai, Xingwang Hu, Ruochan Chen, Yiya Zhang
Software Mentions: 3
Published: about 5 years ago
10.3389/fgene.2021.667038
Genome-Wide Association Study Reveals Candidate Genes for Flowering Time in Cowpea (Vigna unguiculata [L.] Walp.)
Cited by: 15
Author(s): Dev Paudel, Rocheteau Dareus, Julia Rosenwald, María Muñoz‐Amatriaín, Esteban F. Rios
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0078288
Improved Statistical Analysis of Low Abundance Phenomena in Bimodal Bacterial Populations
Cited by: 15
Author(s): Friedrich Reinhard, Jan Roelof van der Meer
Software Mentions: 3
Published: almost 13 years ago
10.1371/journal.pcbi.1000300
Alu Exonization Events Reveal Features Required for Precise Recognition of Exons by the Splicing Machinery
Cited by: 55
Author(s): Schraga Schwartz, Nurit Gal-Mark, Nir Kfir, Oren Ram, Eddo Kim, Gil Ast
Software Mentions: 3
Published: over 17 years ago
10.3389/fimmu.2021.724741
NPM1 Is a Prognostic Biomarker Involved in Immune Infiltration of Lung Adenocarcinoma and Associated With m6A Modification and Glycolysis
Cited by: 37
Author(s): Xusheng Liu, Lu-Meng Zhou, Lingling Yuan, Yan Gao, Xue-Yan Kui, Xiaoyu Liu, Zhijun Pei
Software Mentions: 3
Published: about 5 years ago