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Projects: pypi: package

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Science Score: 65/100
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Very Likely Science (65)

Papers Mentioning package 1,300

10.1371/journal.pone.0006034
Targeting 160 Candidate Genes for Blood Pressure Regulation with a Genome-Wide Genotyping Array
Cited by: 101
Author(s): Siim Sõber, Elin Org, Katrin Kepp, Peeter Juhanson, S. Eyheramendy, Christian Gieger, Peter Lichtner, Norman Klopp, Gudrun Veldre, Margus Viigimaa, Angela Döring, Margus Putku, Piret Kelgo, Sue Shaw‐Hawkins, Philip J. Howard, Abiodun Onipinla, Richard Dobson, Stephen Newhouse, Brown Mj, Anna F. Dominiczak, John Connell, Nilesh J. Samani, Martin Farrall, Mark Caulfield, Patricia B. Munroe, Thomas Illig, Heinz‐Erich Wichmann, Thomas Meitinger, Maris Laan
Software Mentions: 5
Published: over 16 years ago
10.1186/s12859-018-2204-4
polyClustR: defining communities of reconciled cancer subtypes with biological and prognostic significance
Cited by: 1
Author(s): Katherine Eason, Gift Nyamundanda, Anguraj Sadanandam
Software Mentions: 5
Published: over 7 years ago
10.1186/s13024-018-0282-4
Deep proteomic network analysis of Alzheimer’s disease brain reveals alterations in RNA binding proteins and RNA splicing associated with disease
Cited by: 147
Author(s): Erik C. B. Johnson, Eric B. Dammer, Duc M. Duong, Luming Yin, Madhav Thambisetty, Juan C. Troncoso, James J. Lah, Aĺlan I. Levey, Nicholas T. Seyfried
Software Mentions: 5
Published: about 7 years ago
10.1186/s12263-021-00688-2
An 8-week freeze-dried blueberry supplement impacts immune-related pathways: a randomized, double-blind placebo-controlled trial
Cited by: 7
Author(s): Michèle Rousseau, Justine Horne, Frédéric Guénard, Juan de Toro‐Martín, Véronique Garneau, Valérie Guay, Michèle Kearney, Geneviève Pilon, Denis Roy, Patrick Couture, Charles Couillard, André Marette
Software Mentions: 5
Published: over 4 years ago
10.3390/genes12060842
De Novo Transcriptome Meta-Assembly of the Mixotrophic Freshwater Microalga Euglena gracilis
Cited by: 5
Author(s): J.M. Córdoba, Emilie Perez, Mick Van Vlierberghe, Amandine Bertrand, Valérian Lupo, Pierre Cardol, Denis Baurain
Software Mentions: 5
Published: over 4 years ago
10.3389/fgene.2021.670240
IGFBP2 Is a Potential Master Regulator Driving the Dysregulated Gene Network Responsible for Short Survival in Glioblastoma Multiforme
Cited by: 6
Author(s): Manasa Kalya, Alexander Kel, Darius Wlochowitz, Edgar Wingender, Tim Beißbarth
Software Mentions: 5
Published: over 4 years ago
10.3389/fgene.2020.508809
Putative Epigenetic Biomarkers of Stress in Red Blood Cells of Chickens Reared Across Different Biomes
Cited by: 16
Author(s): Fábio Pértille, A. M. G. Ibelli, Maj El Sharif, Mirele Daiana Poleti, Anna Sophie Fröhlich, Shiva Rezaei, Mônica Corrêa Ledur, Per Jensen, Carlos Guerrero-Bosagna, Luiz Lehmann Coutinho
Software Mentions: 5
Published: about 5 years ago
10.1186/1471-2105-13-326
A computational pipeline for the development of multi-marker bio-signature panels and ensemble classifiers
Cited by: 29
Author(s): Oliver P. Günther, Virginia Chen, Gabriela Cohen Freue, Robert Balshaw, Scott J. Tebbutt, Zsuzsanna Hollander, Mandeep Takhar, W. Robert McMaster, Bruce M. McManus, Paul Keown, Raymond T. Ng
Software Mentions: 5
Published: almost 13 years ago
10.1007/s10126-021-10033-8
Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions
Cited by: 5
Author(s): Magnus Alm Rosenblad, Anna Abramova, Ulrika Lind, Pall I. Olason, Stefania Giacomello, Björn Nystedt, Anders Blomberg
Software Mentions: 5
Published: over 4 years ago
10.3389/fcimb.2018.00043
High-Throughput Quantification of Bacterial-Cell Interactions Using Virtual Colony Counts
Cited by: 10
Author(s): Stefanie Hoffmann, Steffi Walter, Anne-Kathrin Blume, Stephan Fuchs, Christiane Schmidt, Annemarie Scholz, Roman G. Gerlach
Software Mentions: 5
Published: over 7 years ago
10.7150/jca.53827
Prognostic Prediction Model for Glioblastoma: A Metabolic Gene Signature and Independent External Validation
Cited by: 6
Author(s): Chuxiang Lei, Wenlin Chen, Yuekun Wang, Binghao Zhao, Penghao Liu, Ziren Kong, Delin Liu, Congxin Dai, Yaning Wang, Yu Wang, Wenbin Ma
Software Mentions: 5
Published: almost 5 years ago
10.1186/s13059-015-0716-z
Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays
Cited by: 191
Author(s): Matteo Dell’Acqua, Daniel M. Gatti, G. Pea, Federica Cattonaro, Frederik Coppens, Gabriele Magris, Aye L. Hlaing, Htay Htay Aung, Hilde Nelissen, Joke Baute, Elisabetta Frascaroli, Gary A. Churchill, Dirk Inzé, Michèle Morgante, Mario Enrico Pè
Software Mentions: 5
Published: about 10 years ago
10.1186/s40168-019-0758-7
Microbiome of vineyard soils is shaped by geography and management
Cited by: 89
Author(s): E. Coller, Alessandro Cestaro, Roberto Zanzotti, D. Bertoldi, Massimo Pindo, Simone Larger, Davide Albanese, E. Mescalchin, Claudio Donati
Software Mentions: 5
Published: almost 6 years ago
10.1186/s40168-018-0612-3
Design and application of a novel two-amplicon approach for defining eukaryotic microbiota
Cited by: 16
Author(s): Ana Popović, Céline Bourdon, Pauline W. Wang, David S. Guttman, Wieger Voskuijl, Michael E. Grigg, Robert Bandsma, John Parkinson
Software Mentions: 5
Published: almost 7 years ago
10.3390/genes12030385
Maternal Vitamin and Mineral Supplementation and Rate of Maternal Weight Gain Affects Placental Expression of Energy Metabolism and Transport-Related Genes
Cited by: 25
Author(s): Wellison J. S. Diniz, Lawrence P. Reynolds, P. P. Borowicz, Alison K Ward, Kevin K. Sedivec, Kacie L McCarthy, Cierrah J Kassetas, Friederike Baumgaertner, James D Kirsch, Sheri T. Dorsam, Tammi L Neville, J Chris Forcherio, Ronald Scott, J. S. Caton, Carl R Dahlen
Software Mentions: 5
Published: over 4 years ago
10.1186/s12864-021-07872-z
Grid search approach to discriminate between old and recent inbreeding using phenotypic, pedigree and genomic information
Cited by: 5
Author(s): Pattarapol Sumreddee, El Hamidi Hay, Sajjad Toghiani, Andrew Roberts, Samuel E. Aggrey, Romdhane Rekaya
Software Mentions: 5
Published: over 4 years ago
10.3389/fcvm.2021.694238
AKR1C3 and Its Transcription Factor HOXB4 Are Promising Diagnostic Biomarkers for Acute Myocardial Infarction
Cited by: 7
Author(s): Jingjing Liang, Yue Cao, Minqiang He, Weiwen Li, Guan‐Jiang Huang, Tianyi Ma, Meijun Li, Yuli Huang, Xiaohui Huang, Yunzhao Hu
Software Mentions: 5
Published: about 4 years ago
10.1371/journal.pone.0072238
Effect of Doxorubicin/Pluronic SP1049C on Tumorigenicity, Aggressiveness, DNA Methylation and Stem Cell Markers in Murine Leukemia
Cited by: 73
Author(s): Daria Y. Alakhova, Yi Zhao, Shu Li, Alexander V. Kabanov
Software Mentions: 5
Published: about 12 years ago
10.3390/ijms20205043
Genome-Wide Identification, Gene Structure and Expression Analysis of the MADS-Box Gene Family Indicate Their Function in the Development of Tobacco (Nicotiana tabacum L.)
Cited by: 18
Author(s): Ge Bai, Da-Hai Yang, Peijian Cao, Huaiying Yao, Yihan Zhang, Xuejun Chen, Bingguang Xiao, Feng Li, Zhenyu Wang, Jun Yang, He Xie
Software Mentions: 5
Published: about 6 years ago
10.3389/fonc.2020.586019
Three Immune-Associated Subtypes of Diffuse Glioma Differ in Immune Infiltration, Immune Checkpoint Molecules, and Prognosis
Cited by: 19
Author(s): Quanwei Zhou, Xuejun Yan, Weidong Liu, Yin Wu, Hongjuan Xu, Damei Cheng, Xingjun Jiang, Chao Ren
Software Mentions: 5
Published: almost 5 years ago
10.3390/nu13093289
Analyzing Type 2 Diabetes Associations with the Gut Microbiome in Individuals from Two Ethnic Backgrounds Living in the Same Geographic Area
Cited by: 13
Author(s): Manon Balvers, Mélanie Deschasaux, Bert‐Jan H. van den Born, Koos Zwinderman, Max Nieuwdorp, Evgeni Levin
Software Mentions: 5
Published: about 4 years ago
10.3389/fonc.2021.637193
Oncogenic B-Myb Is Associated With Deregulation of the DREAM-Mediated Cell Cycle Gene Expression Program in High Grade Serous Ovarian Carcinoma Clinical Tumor Samples
Cited by: 5
Author(s): Audra N. Iness, Lisa Rubinsak, Steven J. Meas, Jessica Chaoul, Sadia Sayeed, Raghavendra Pillappa, Sarah M. Temkin, Mikhail G. Dozmorov, Larisa Litovchick
Software Mentions: 5
Published: over 4 years ago
10.7554/eLife.66018
Information flow, cell types and stereotypy in a full olfactory connectome
Cited by: 82
Author(s): Philipp Schlegel, Alexander Shakeel Bates, Tomke Stürner, Sridhar R. Jagannathan, Nikolas Drummond, Joseph Hsu, Laia Serratosa Capdevila, Alexandre Javier, Elizabeth C. Marin, Asa Barth-Maron, Imaan F M Tamimi, Feng Li, Gerald M. Rubin, Stephen M. Plaza, Marta Costa, Gregory Jefferis
Software Mentions: 5
Published: over 4 years ago
10.3389/fmicb.2018.02784
The Influence of Viable Cells and Cell-Free Extracts of Lactobacillus casei on Volatile Compounds and Polyphenolic Profile of Elderberry Juice
Cited by: 17
Author(s): Annalisa Ricci, Alessia Levante, Martina Cirlini, Luca Calani, Valentina Bernini, Daniele Del Rio, Gianni Galaverna, Erasmo Neviani, Camilla Lazzi
Software Mentions: 5
Published: almost 7 years ago
10.3389/fmicb.2020.548618
Microbiome in Healthy Women Between Two Districts With Different Air Quality Index
Cited by: 8
Author(s): Yinhua Wu, Zujin Wang, Yu Zhang, Li-Ming Ruan, Ang Li, Xiaoyan Liu
Software Mentions: 5
Published: about 5 years ago
10.3389/fmicb.2017.00101
Freshwater Recirculating Aquaculture System Operations Drive Biofilter Bacterial Community Shifts around a Stable Nitrifying Consortium of Ammonia-Oxidizing Archaea and Comammox Nitrospira
Cited by: 163
Author(s): Ryan P. Bartelme, Sandra L. McLellan, Ryan J. Newton
Software Mentions: 5
Published: almost 9 years ago
10.3389/fnins.2016.00071
BBBomics-Human Blood Brain Barrier Transcriptomics Hub
Cited by: 28
Author(s): Krishna R. Kalari, Kevin J. Thompson, Asha Nair, Xiaojia Tang, Matthew A. Bockol, Navya Jhawar, Suresh Kumar Swaminathan, Val J. Lowe, Karunya K. Kandimalla
Software Mentions: 5
Published: over 9 years ago
10.3389/fmicb.2020.02023
Microbial Communities of the Shallow-Water Hydrothermal Vent Near Naples, Italy, and Chemosynthetic Symbionts Associated With a Free-Living Marine Nematode
Cited by: 12
Author(s): Laure Bellec, Marie-Anne Cambon-Bonavita, Lucile Durand, Johanne Aubé, Nicolas Gayet, Roberto Sandulli, Christophe Brandily, Daniela Zeppilli
Software Mentions: 5
Published: about 5 years ago
10.3389/fmicb.2015.01383
Microbiota Plays a Role in Oral Immune Priming in Tribolium castaneum
Cited by: 45
Author(s): Momir Futo, Sophie A. O. Armitage, Joachim Kurtz
Software Mentions: 5
Published: almost 10 years ago
10.3389/fonc.2020.00081
A 6 lncRNA-Based Risk Score System for Predicting the Recurrence of Colon Adenocarcinoma Patients
Cited by: 18
Author(s): Haojie Yang, Hong-Cheng Lin, Lun Hua, Dan Gan, Wei Jin, Can Cui, Yixin Yan, Yiming Qian, Changpeng Han, Zhenyi Wang
Software Mentions: 5
Published: over 5 years ago
10.18632/oncotarget.22750
Development of a predictive miRNA signature for breast cancer risk among high-risk women
Cited by: 28
Author(s): Nicholas H. Farina, Jon E. Ramsey, Melissa Cuke, Thomas P. Ahern, David J. Shirley, Janet L. Stein, Gary S. Stein, Jane B. Lian, Marie Wood
Software Mentions: 5
Published: almost 8 years ago
10.1186/s12983-015-0109-x
Transcriptional profiling of predator-induced phenotypic plasticity in Daphnia pulex
Cited by: 33
Author(s): Andrey Rozenberg, Mrutyunjaya Parida, Florian Leese, Linda C. Weiss, Ralph Tollrian, J. Robert Manak
Software Mentions: 5
Published: over 10 years ago
10.3390/ijms20225594
Lipid Related Genes Altered in NASH Connect Inflammation in Liver Pathogenesis Progression to HCC: A Canonical Pathway
Cited by: 19
Author(s): Christophe Desterke, Franck Chiappini
Software Mentions: 5
Published: almost 6 years ago
10.1534/g3.113.007807
Increased Genomic Prediction Accuracy in Wheat Breeding Through Spatial Adjustment of Field Trial Data
Cited by: 75
Author(s): Bettina Lado, Iván Matus, Alejandra Rodríguez, Luis Inostroza, Jesse Poland, François Belzile, Alejandro del Pozo, Martín Quincke, Marina Castro, Jarislav von Zitzewitz
Software Mentions: 5
Published: almost 12 years ago
10.3390/nu12072147
A Comprehensive Evaluation of the Impact of Bovine Milk Containing Different Beta-Casein Profiles on Gut Health of Ageing Mice
Cited by: 22
Author(s): Barbara Guantario, Marzia Giribaldi, Chiara Devirgiliis, Alberto Finamore, Elena Colombino, Maria Teresa Capucchio, Rocchina Evangelista, Vincenzo Motta, Paola Zinno, Simona Cirrincione, Sara Antoniazzi, Laura Cavallarin, Marianna Roselli
Software Mentions: 4
Published: over 5 years ago
10.7554/eLife.08851
Maternal LSD1/KDM1A is an essential regulator of chromatin and transcription landscapes during zygotic genome activation
Cited by: 99
Author(s): Katia Ancelin, Laurène Syx, Maud Borensztein, Noémie Ranisavljevic, Ivaylo Vassilev, Luis Briseño-Roa, Tao Liu, Eric Metzger, Nicolas Servant, Emmanuel Barillot, Chongjian Chen, Roland Schüle, Edith Heard
Software Mentions: 4
Published: over 9 years ago
10.3389/fmicb.2014.00752
Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage
Cited by: 58
Author(s): Björn Breidenbach, Ralf Conrad
Software Mentions: 4
Published: almost 11 years ago
10.1534/g3.119.400336
A Bayesian Genomic Multi-output Regressor Stacking Model for Predicting Multi-trait Multi-environment Plant Breeding Data
Cited by: 20
Author(s): Osval A. Montesinos-L֯ópez, Abelardo Montesinos‐López, J. Crossa, Jaime Cuevas, J. Cricelio Montesinos-López, Zitlalli Salas Gutiérrez, Morten Lillemo, Philomin Juliana, Ravi P. Singh
Software Mentions: 4
Published: about 6 years ago
10.3389/fgene.2019.00439
Whole-Exome Sequencing Identifies Somatic Mutations Associated With Mortality in Metastatic Clear Cell Kidney Carcinoma
Cited by: 17
Author(s): Alejandro Mendoza-Álvarez, Beatriz Guillén‐Guío, Adrian Baez‐Ortega, Carolina Hernandez-Perez, Sita Lakhwani-Lakhwani, María-del-Carmen Maeso, José M. Lorenzo-Salazar, Manuel Morales, Carlos Flores
Software Mentions: 4
Published: over 6 years ago
10.18632/oncotarget.24898
Long noncoding RNAs are associated with metabolic and cellular processes in the jejunum mucosa of pre-weaning calves in response to different diets
Cited by: 17
Author(s): Rosemarie Weikard, Frieder Hadlich, H.M. Hammon, D. Frieten, C. Gerbert, Christian Koch, G. Dusel, Christa Kühn
Software Mentions: 4
Published: over 7 years ago
10.3389/fmicb.2016.02067
Fine Spatial Scale Variation of Soil Microbial Communities under European Beech and Norway Spruce
Cited by: 72
Author(s): Heiko Nacke, Kezia Goldmann, Ingo Schöning, Birgit Pfeiffer, Kristin Kaiser, Genis Castillo-Villamizar, Marion Schrumpf, François Buscot, Rolf Daniel, Tesfaye Wubet
Software Mentions: 4
Published: almost 9 years ago
10.3389/fmicb.2020.01686
Soil Fungal Communities Investigated by Metabarcoding Within Simulated Forensic Burial Contexts
Cited by: 11
Author(s): Noemi Procopio, Stefano Ghignone, Samuele Voyron, Marco Chiapello, Anna Williams, Andrew Chamberlain, Antonietta Mello, Michael Buckley
Software Mentions: 4
Published: over 5 years ago
10.18632/oncotarget.19642
Exome sequencing analysis of murine medulloblastoma models identifies WDR11 as a potential tumor suppressor in Group 3 tumors
Cited by: 8
Author(s): Lei Wei, Brian L. Murphy, Gang Wu, Matthew Parker, John Easton, Richard J. Gilbertson, Jinghui Zhang, Martine F. Roussel
Software Mentions: 4
Published: over 8 years ago
10.18632/oncotarget.9721
<i>KCNN4</i>and<i>S100A14</i>act as predictors of recurrence in optimally debulked patients with serous ovarian cancer
Cited by: 26
Author(s): Hongbo Zhao, Ensong Guo, Ting Hu, Qian Sun, Jiankang Wu, Xingguang Lin, Danfeng Luo, Chaoyang Sun, Changyu Wang, Bo Zhou, Na Li, Meng Xia, Hao Lü, Meng Li, Xiaoyan Xu, Junbo Hu, Ding Ma, Gang Chen, Tao Zhu
Software Mentions: 4
Published: over 9 years ago
10.3390/nu11051032
Plasma Metabolites Associated with Coffee Consumption: A Metabolomic Approach within the PREDIMED Study
Cited by: 15
Author(s): Christopher Papandreou, Pablo Hernández‐Alonso, Mònica Bulló, Miguel Ruiz‐Canela, Edward Yu, Marta Guasch‐Ferré, Estefanía Toledo, Courtney Dennis, Amy Deik, Clary B. Clish, Cristina Razquín, Dolores Corella, Ramón Estruch, Emilio Ros, Montserrat Fitó, Fernando Arós, Miquel Fiol, José Lapetra, Cristina Ruano, Liming Liang, Miguel Ángel Martínez‐González, Frank B. Hu, Jordi Salas‐Salvadó
Software Mentions: 4
Published: over 6 years ago
10.3390/nu12123858
Effects of Daily Raspberry Consumption on Immune-Metabolic Health in Subjects at Risk of Metabolic Syndrome: A Randomized Controlled Trial
Cited by: 18
Author(s): Maximilien Franck, Juan de Toro‐Martín, Véronique Garneau, Valérie Guay, Michèle Kearney, Geneviève Pilon, Denis Roy, Patrick Couture, Charles Couillard, André Marette, Marie‐Claude Vohl
Software Mentions: 4
Published: almost 5 years ago
10.3389/fonc.2020.560229
A Molecular Subtype Model for Liver HBV-Related Hepatocellular Carcinoma Patients Based on Immune-Related Genes
Cited by: 5
Author(s): Qiyao Zhang, Xiao Yu, Qingyuan Zheng, Yuting He, Wenzhi Guo
Software Mentions: 4
Published: about 5 years ago
10.3389/fgene.2021.634554
Molecular Mapping of Water-Stress Responsive Genomic Loci in Lettuce (Lactuca spp.) Using Kinetics Chlorophyll Fluorescence, Hyperspectral Imaging and Machine Learning
Cited by: 9
Author(s): Pawan Kumar, Renée L. Eriksen, Ivan Šimko, Beiquan Mou
Software Mentions: 4
Published: over 4 years ago
10.3389/fonc.2021.634569
Sharp Downregulation of Hub Genes Associated With the Pathogenesis of Breast Cancer From Ductal Carcinoma In Situ to Invasive Ductal Carcinoma
Cited by: 4
Author(s): Yao Wang, Faqing Liang, Yuting Zhou, Juanjuan Qiu, Qing Lv, Zhenggui Du
Software Mentions: 4
Published: over 4 years ago
10.3389/fonc.2021.701500
Development and Validation of a Radiosensitivity Prediction Model for Lower Grade Glioma Based on Spike-and-Slab Lasso
Cited by: 3
Author(s): Zixuan Du, Shang Cai, Derui Yan, Huijun Li, Xinyan Zhang, Wei Yang, Jianping Cao, Nengjun Yi, Zaixiang Tang
Software Mentions: 4
Published: over 4 years ago
10.3389/fonc.2020.571655
Identification and Validation of a Novel Six-Gene Prognostic Signature of Stem Cell Characteristic in Colon Cancer
Cited by: 17
Author(s): Liang Yue, Shijie Qi, Xin Wu
Software Mentions: 4
Published: over 4 years ago
10.3390/ijms22052679
Sperm Methylome Profiling Can Discern Fertility Levels in the Porcine Biomedical Model
Cited by: 15
Author(s): Fábio Pértille, Manuel Álvarez‐Rodríguez, Arthur Nery da Silva, Isabel Barranco, Jordi Roca, Carlos Guerrero-Bosagna, Heriberto Rodríguez-Martinez
Software Mentions: 4
Published: over 4 years ago
10.3390/ijms21239211
Transcriptomic Leaf Profiling Reveals Differential Responses of the Two Most Traded Coffee Species to Elevated [CO2]
Cited by: 10
Author(s): Isabel Marques, Isabel Fernandes, Pedro Henrique Chorão David, Octávio S. Paulo, Luís F. Goulão, Ana S. Fortunato, Fernando C. Lidon, Fábio M. DaMatta, José C. Ramalho, Ana I. Ribeiro‐Barros
Software Mentions: 4
Published: almost 5 years ago
10.3390/ijms21082966
Differential Expression and Function of Bicellular Tight Junctions in Skin and Oral Wound Healing
Cited by: 20
Author(s): Trevor R. Leonardo, Junhe Shi, Dandan Chen, Harsh M. Trivedi, Lin Chen
Software Mentions: 4
Published: over 5 years ago
10.3389/fpls.2021.670302
CRISPR/Cas9-Induced Loss-of-Function Mutation in the Barley Mitogen-Activated Protein Kinase 6 Gene Causes Abnormal Embryo Development Leading to Severely Reduced Grain Germination and Seedling Shootless Phenotype
Cited by: 8
Author(s): Pavel Křenek, Elizaveta Chubar, Pavol Vadovič, Ludmila Ohnoutková, Tomáš Vlčko, Véronique Bergougnoux, Petr Cápal, Miroslav Ovečka, Jozef Šamaj
Software Mentions: 4
Published: over 4 years ago
10.3389/fpls.2019.00010
Flavonol Profile Is a Reliable Indicator to Assess Canopy Architecture and the Exposure of Red Wine Grapes to Solar Radiation
Cited by: 67
Author(s): Johann Martínez‐Lüscher, Luca Brillante, S. Kaan Kurtural
Software Mentions: 4
Published: almost 7 years ago
10.3389/fimmu.2021.644838
High Resolution Haplotype Analyses of Classical HLA Genes in Families With Multiple Sclerosis Highlights the Role of HLA-DP Alleles in Disease Susceptibility
Cited by: 4
Author(s): Kazutoyo Osoegawa, Lisa E. Creary, Gonzalo Montero-Martín, Kalyan C. Mallempati, Sridevi Gangavarapu, Stacy J. Caillier, Adam Santaniello, Noriko Isobe, Jill A. Hollenbach, Stephen L. Hauser, Jorge R. Oksenberg, Marcelo Fernández-Viña
Software Mentions: 4
Published: over 4 years ago
10.3390/ijms19010031
Transcriptome Analysis of Tomato Leaf Spot Pathogen Fusarium proliferatum: De novo Assembly, Expression Profiling, and Identification of Candidate Effectors
Cited by: 15
Author(s): Meiling Gao, Siyu Yao, Yang Liu, Haining Yu, Pao Xu, Wenhui Sun, Zhongji Pu, Hongman Hou, Yongming Bao
Software Mentions: 4
Published: almost 8 years ago
10.7554/eLife.63333
Estrogen receptor alpha in the brain mediates tamoxifen-induced changes in physiology in mice
Cited by: 15
Author(s): Zhang Zhi, Jae Whan Park, In Sook Ahn, Graciel Diamante, Nilla Sivakumar, Douglas Arneson, Xia Yang, J. Edward Van Veen, Stephanie M. Correa
Software Mentions: 4
Published: over 4 years ago
10.1038/bcj.2016.77
lncRNA profiling in early-stage chronic lymphocytic leukemia identifies transcriptional fingerprints with relevance in clinical outcome
Cited by: 40
Author(s): Domenica Ronchetti, Martina Manzoni, Luca Agnelli, Cristina Vinci, Sonia Fabris, Giovanna Cutrona, Serena Matis, Monica Colombo, S. Galletti, Elisa Taìana, Anna Grazia Recchia, Sabrina Bossio, Massimo Gentile, Caterina Musolino, Francesco Di Raimondo, Andrea Grilli, Silvio Bicciato, Agostino Cortelezzi, Pierfrancesco Tassone, Fortunato Morabito, Manlio Ferrarini, Antonino Neri
Software Mentions: 4
Published: about 9 years ago
10.1002/ece3.6635
Genetic structuring among colonies of a pantropical seabird: Implication for subspecies validation and conservation
Cited by: 4
Author(s): Laurence Humeau, Matthieu Le Corre, Stuart F. Reynolds, Colin P. Wearn, Janos C. Hennicke, James C. Russell, Yann Gomard, Hélène Magalon, Patrick Pinet, Pauline Gélin, François Xavier Couzi, E. Bemanaja, Vikash Tatayah, Ousseni Bacar, Gérard Rocamora, Patrick Talbot, Nirmal Shah, Leandro Bugoni, Denis Da Silva, A. Jaeger
Software Mentions: 4
Published: about 5 years ago
10.4049/jimmunol.1602033
Integration of Kinase and Calcium Signaling at the Level of Chromatin Underlies Inducible Gene Activation in T Cells
Cited by: 45
Author(s): Ruth Brignall, Pierre Cauchy, Sarah L Bevington, Bethany Gorman, Angela Oliveira Pisco, James Bagnall, Christopher Boddington, William Rowe, Hazel England, Kevin Rich, Lorraine Schmidt, Nigel P. Dyer, Mark A. Travis, Sascha Ott, Dean A. Jackson, Peter N. Cockerill, Pawel Paszek
Software Mentions: 4
Published: about 8 years ago
10.1002/ece3.660
Investigating sex-specific dynamics using uniparental markers: West New Guinea as a case study
Cited by: 4
Author(s): Stefano Mona, Ernest Mordret, Michel Veuille, Mila Tommaseo-Ponzetta
Software Mentions: 4
Published: over 12 years ago
10.3390/ijerph17114047
Short-Term Effects of Ambient Ozone, PM2.5, and Meteorological Factors on COVID-19 Confirmed Cases and Deaths in Queens, New York
Cited by: 146
Author(s): Atin Adhikari, Jingjing Yin
Software Mentions: 4
Published: over 5 years ago
10.1002/ece3.7501
Interactive effects of body mass changes and species‐specific morphology on flight behavior of chick‐rearing Antarctic fulmarine petrels under diurnal wind patterns
Cited by: 5
Author(s): Nina Dehnhard, Andrew Klekociuk, Louise Emmerson
Software Mentions: 4
Published: over 4 years ago
10.1186/1471-2105-8-456
The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
Cited by: 33
Author(s): J. Christopher Bare, Paul Shannon, Amy K. Schmid, Nitin S. Baliga
Software Mentions: 4
Published: almost 18 years ago
10.1002/ece3.7711
Environmental filtering and dispersal limitation jointly shaped the taxonomic and phylogenetic beta diversity of natural forests in southern China
Cited by: 15
Author(s): Wei Shi, Yongqiang Wang, Wenhua Xiang, Xiankun Li, Kaihua Cao
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0208263
QTM: Computational package using MPI protocol for Quantum Trajectories Method
Cited by: 1
Author(s): Marek Sawerwain, Joanna Wiśniewska
Software Mentions: 4
Published: almost 7 years ago
10.1155/2014/914767
<i>Geodermatophilus poikilotrophi</i>sp. nov.: A Multitolerant Actinomycete Isolated from Dolomitic Marble
Cited by: 32
Author(s): María del Carmen Montero-Calasanz, Benjamin Hofner, Markus Göker, Manfred Rohde, Cathrin Spröer, Karima Hezbri, Maher Gtari, Peter Schümann, Hans‐Peter Klenk
Software Mentions: 4
Published: almost 12 years ago
10.1002/bimj.202000112
Nowcasting the COVID‐19 pandemic in Bavaria
Cited by: 54
Author(s): Felix Günther, Andreas Bender, Katharina Katz, Helmut Küchenhoff, Michael Höhle
Software Mentions: 4
Published: almost 5 years ago
10.1084/jem.20190730
Single-cell profiling reveals an endothelium-mediated immunomodulatory pathway in the eye choroid
Cited by: 47
Author(s): Guillermo L. Lehmann, Christin Hanke-Gogokhia, Yang Hu, Rohan Bareja, Zelda Salfati, Michael Ginsberg, Daniel J. Nolan, Santiago P. Méndez-Huergo, Tomás Dalotto-Moreno, Alexandre Wojcinski, Francisca Ochoa, Siyuan Zeng, Juan P. Cerliani, Lampros Panagis, Patrick J. Zager, Robert F. Mullins, Shuntaro Ogura, Gerard A. Lutty, Jakyung Bang, Jonathan H. Zippin, Carmelo Romano, Gabriel A. Rabinovich, Olivier Elemento, Alexandra L. Joyner, Shahin Rafii, Enrique Rodríguez-Boulan, Ignacio Benedicto
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0247055
Statistical meta-analysis to investigate the association between the Interleukin-6 (IL-6) gene polymorphisms and cancer risk
Cited by: 16
Author(s): Md. Harun-Or-Roshid, Md. Borqat Ali, Jesmin, Md. Nurul Haque Mollah
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-021-93552-7
Electrophysiological characterization of a diverse group of sugar transporters from Trichoderma reesei
Cited by: 7
Author(s): Sami Havukainen, Jonai Pujol‐Giménez, Mari Valkonen, Ann Westerholm-Parvinen, Matthias A. Hediger, Christopher P. Landowski
Software Mentions: 4
Published: over 4 years ago
10.3390/s140815348
Intra-and-Inter Species Biomass Prediction in a Plantation Forest: Testing the Utility of High Spatial Resolution Spaceborne Multispectral RapidEye Sensor and Advanced Machine Learning Algorithms
Cited by: 104
Author(s): Timothy Dube, Onisimo Mutanga, Elhadi Adam, Riyad Ismail
Software Mentions: 4
Published: about 11 years ago
10.1371/journal.pone.0172829
Small rodents as paratenic or intermediate hosts of carnivore parasites in Berlin, Germany
Cited by: 27
Author(s): Jürgen Krücken, Julia Blümke, Denny Maaz, Janina Demeler, Sabrina Ramünke, Daniela Antolová, Roland Schaper, Georg von Samson‐Himmelstjerna
Software Mentions: 4
Published: over 8 years ago
10.1038/s41598-021-86406-9
Extreme philopatry and genetic diversification at unprecedented scales in a seabird
Cited by: 6
Author(s): D. K. Danckwerts, Laurence Humeau, Patrick Pinet, Christopher D. McQuaid, Matthieu Le Corre
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-021-91625-1
Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19
Cited by: 24
Author(s): Brian Le, Gaia Andreoletti, Tomiko Oskotsky, Albert Vallejo-Gracia, Romel Rosales, Katharine Yu, Idit Kosti, Kristoffer E. Leon, Daniel Bunis, Christine Li, G. Renuka Kumar, Kris M. White, Adolfo Garcı́a-Sastre, Mélanie Ott, Marina Sirota
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.3699
Spatial and temporal genetic dynamics of the grasshopper <i>Oedaleus decorus</i> revealed by museum genomics
Cited by: 14
Author(s): Sarah Schmid, Samuel Neuenschwander, Camille Pitteloud, Gerald Heckel, Mila Pajkovic, Raphaël Arlettaz, Nadir Alvarez
Software Mentions: 4
Published: almost 8 years ago
10.1371/journal.pone.0180236
An adjustable predictive score of graft survival in kidney transplant patients and the levels of risk linked to de novo donor-specific anti-HLA antibodies
Cited by: 14
Author(s): Aurélie Prémaud, Matthieu Filloux, Philippe Gatault, Antoine Thierry, Matthias Büchler, E Munteanu, Pierre Marquet, Marie Essig, Annick Rousseau
Software Mentions: 4
Published: over 8 years ago
10.1186/1471-2105-9-164
A comprehensive re-analysis of the Golden Spike data: Towards a benchmark for differential expression methods
Cited by: 32
Author(s): Richard D. Pearson
Software Mentions: 4
Published: over 17 years ago
10.1002/ece3.7526
Habitat fragmentation and vegetation structure impact gastrointestinal parasites of small mammalian hosts in Madagascar
Cited by: 7
Author(s): Frederik Kiene, Bertrand Andriatsitohaina, Malcolm S. Ramsay, Romule Rakotondravony, Christina Strübe, Ute Radespiel
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.5032
Dissimilarity of individual microsatellite profiles under different mutation models: Empirical approach
Cited by: 12
Author(s): Evsey Kosman, Jukka Jokela
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-021-85735-z
The phylogeographic history of Krascheninnikovia reflects the development of dry steppes and semi-deserts in Eurasia
Cited by: 9
Author(s): Anna Seidl, Karin Tremetsberger, Simon Pfanzelt, Frank R. Blattner, Barbara Neuffer, Nikolai Friesen, Herbert Hurka, А. И. Шмаков, Batlai Oyuntsetseg, Anže Žerdoner Čalasan, Polina V. Vesselova, Karl‐Georg Bernhardt
Software Mentions: 4
Published: over 4 years ago
10.1111/tgis.12456
Compactly representing massive terrain models as TINs in CityGML
Cited by: 9
Author(s): Kavisha Kumar, Hugo Ledoux, J.E. Stoter
Software Mentions: 4
Published: about 7 years ago
10.15252/emmm.201708202
A proteomic network approach across the <scp>ALS</scp> ‐ <scp>FTD</scp> disease spectrum resolves clinical phenotypes and genetic vulnerability in human brain
Cited by: 115
Author(s): Mfon Umoh, Eric B. Dammer, Jingting Dai, Duc M. Duong, James J. Lah, Aĺlan I. Levey, Marla Gearing, Jonathan D. Glass, Nicholas T. Seyfried
Software Mentions: 4
Published: almost 8 years ago
10.1186/s12893-020-00856-y
Five gene signatures were identified in the prediction of overall survival in resectable pancreatic cancer
Cited by: 8
Author(s): Chao Wu, Zuowei Wu, Bole Tian
Software Mentions: 4
Published: about 5 years ago
10.3390/ani10112123
Social Network Analysis of Agonistic Behaviour and Its Association with Economically Important Traits in Pigs
Cited by: 8
Author(s): Saif Agha, E. Fábrega, Raquel Quintanilla, Juan Pablo Sánchez
Software Mentions: 4
Published: almost 5 years ago
10.1002/eco.1827
The effects of catchment and riparian forest quality on stream environmental conditions across a tropical rainforest and oil palm landscape in Malaysian Borneo
Cited by: 55
Author(s): Sarah H. Luke, Holly Barclay, Kawi Bidin, Chey Vun Khen, Robert M. Ewers, William A. Foster, Anand Nainar, Marion Pfeifer, Glen Reynolds, Edgar C. Turner, R. P. D. Walsh, David C. Aldridge
Software Mentions: 4
Published: over 8 years ago
10.1371/journal.pgen.1008181
Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals
Cited by: 101
Author(s): Shira Perez, Antony Kaspi, Tom Domovitz, Ateret Davidovich, Anat Lavi-Itzkovitz, Tomer Meirson, Jacinta A Holmes, Chia Yen Dai, Chung Feng Huang, Raymond T. Chung, Nimer Assy, Assam El‐Osta, Gur Yaari, Salomon M. Stemmer, Ming‐Lung Yu, Izhak Haviv, Meital Gal-Tanamy
Software Mentions: 4
Published: over 6 years ago
10.1038/s41598-019-49446-w
De novo transcriptome provides insights into the growth behaviour and resveratrol and trans-stilbenes biosynthesis in Dactylorhiza hatagirea - An endangered alpine terrestrial orchid of western Himalaya
Cited by: 19
Author(s): Nisha Dhiman, Nitesh Kumar Sharma, Pooja Thapa, Isha Sharma, Mohit Kumar Swarnkar, Amit Chawla, Ravi Shankar, Amita Bhattacharya
Software Mentions: 4
Published: about 6 years ago
10.1186/s12862-020-01739-9
Genomic variation in the American pika: signatures of geographic isolation and implications for conservation
Cited by: 4
Author(s): Kelly B. Klingler, Joshua P. Jahner, Thomas L. Parchman, Chris Ray, Mary M. Peacock
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pntd.0008945
Multi-locus genotyping reveals established endemicity of a geographically distinct Plasmodium vivax population in Mauritania, West Africa
Cited by: 7
Author(s): Hampaté Bâ, Sarah Auburn, Christopher G Jacob, Sónia Gonçalves, Craig W. Duffy, Lindsay B. Stewart, Ric N. Price, Yacine Boubou Deh, M. Diallo, Abderahmane Tandia, Dominic Kwiatkowski, David J. Conway
Software Mentions: 4
Published: almost 5 years ago
10.1186/s12888-018-1741-8
Prevalence of depression or depressive symptoms among people living with HIV/AIDS in China: a systematic review and meta-analysis
Cited by: 68
Author(s): Tingting Wang, Hanlin Fu, Atipatsa Chiwanda Kaminga, Zhanzhan Li, Gangqiang Guo, Lizhang Chen, Qiongxuan Li
Software Mentions: 4
Published: over 7 years ago
10.18632/aging.101170
Metabolomic signature associated with reproduction-regulated aging in Caenorhabditis elegans
Cited by: 39
Author(s): Qin-Li Wan, Xiaohuo Shi, Jiangxin Liu, Aijun Ding, Yuan-Zhu Pu, Zhigang Li, Gui-Sheng Wu, Huai‐Rong Luo
Software Mentions: 4
Published: over 8 years ago
10.1038/s42003-020-0804-9
Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease
Cited by: 55
Author(s): Arlin Keo, Ahmed Mahfouz, Angela Ingrassia, Jean Pascal Meneboo, Céline Villenet, Eugénie Mutez, Thomas Comptdaer, Boudewijn P. F. Lelieveldt, Martin Figeac, Marie-Christine Chartier-Harlin, Wilma D. J. van de Berg, Jacobus J. van Hilten, Marcel J. T. Reinders
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-019-51056-5
Down-regulation of CK2α correlates with decreased expression levels of DNA replication minichromosome maintenance protein complex (MCM) genes
Cited by: 4
Author(s): Susanne Schaefer, Thomas Koed Doktor, Sabrina B Frederiksen, Kathleen Chea, Mirka Hlavacova, Georg M. Bruun, Maj Rabjerg, Brage S. Andresen, Isabel Domı́nguez, Bárbara Guerra
Software Mentions: 4
Published: about 6 years ago
10.1038/s41598-020-77063-5
Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance
Cited by: 18
Author(s): Alexandre Hild Aono, Everardo Andrade da Costa, Hugo Vianna Silva Rody, James Shiniti Nagai, Ricardo José Gonzaga Pimenta, Melina Cristina Mancini, Fernanda Raquel Camilo dos Santos, Luciana Rossini Pinto, Marcos Guimarães de Andrade Landell, Anete Pereira de Souza, Reginaldo Massanobu Kuroshu
Software Mentions: 4
Published: almost 5 years ago
10.3390/biology10020072
Plant Endemism Centres and Biodiversity Hotspots in Greece
Cited by: 45
Author(s): Konstantinos Kougioumoutzis, Ioannis Kokkoris, Maria Panitsa, Athanasios S. Kallimanis, Arne Strid, Panayotis Dimopoulos
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pcbi.1003480
GAGA: A New Algorithm for Genomic Inference of Geographic Ancestry Reveals Fine Level Population Substructure in Europeans
Cited by: 9
Author(s): Oscar Lao, Fan Liu, Andreas Wollstein, Manfred Kayser
Software Mentions: 4
Published: over 11 years ago
10.1038/s41598-021-91824-w
Lack of detectable genetic isolation in the cyclic rodent Microtus arvalis despite large landscape fragmentation owing to transportation infrastructures
Cited by: 4
Author(s): Julio Domínguez, María Calero‐Riestra, Pedro P. Olea, Juan E. Malo, Christopher P. Burridge, Kirstin Proft, Sonia Illanas, Javier Viñuela, Jesús T. García
Software Mentions: 4
Published: over 4 years ago