pypi: package | Projects | Ecosyste.ms: Papers

10.3389/fnins.2016.00071

BBBomics-Human Blood Brain Barrier Transcriptomics Hub
Cited by: 28
Author(s): Krishna R. Kalari, Kevin J. Thompson, Asha Nair, Xiaojia Tang, Matthew A. Bockol, Navya Jhawar, Suresh Kumar Swaminathan, Val J. Lowe, Karunya K. Kandimalla
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0006034

Targeting 160 Candidate Genes for Blood Pressure Regulation with a Genome-Wide Genotyping Array
Cited by: 101
Author(s): Siim Sõber, Elin Org, Katrin Kepp, Peeter Juhanson, S. Eyheramendy, Christian Gieger, Peter Lichtner, Norman Klopp, Gudrun Veldre, Margus Viigimaa, Angela Döring, Margus Putku, Piret Kelgo, Sue Shaw‐Hawkins, Philip J. Howard, Abiodun Onipinla, Richard Dobson, Stephen Newhouse, Brown Mj, Anna F. Dominiczak, John Connell, Nilesh J. Samani, Martin Farrall, Mark Caulfield, Patricia B. Munroe, Thomas Illig, Heinz‐Erich Wichmann, Thomas Meitinger, Maris Laan
Software Mentions: 5
Published: over 15 years ago

10.1186/s12859-018-2204-4

polyClustR: defining communities of reconciled cancer subtypes with biological and prognostic significance
Cited by: 1
Author(s): Katherine Eason, Gift Nyamundanda, Anguraj Sadanandam
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2015.01383

Microbiota Plays a Role in Oral Immune Priming in Tribolium castaneum
Cited by: 45
Author(s): Momir Futo, Sophie A. O. Armitage, Joachim Kurtz
Software Mentions: 5
Published: almost 9 years ago

10.3892/mmr.2014.3006

Analysis of the protein-protein interaction networks of differentially expressed genes in pulmonary embolism
Cited by: 5
Author(s): Hao Wang, Chen Wang, Lei Zhang, Yinghua Lu, Qianglin Duan, Zhu Gong, Aibin Liang, Haoming Song, Lemin Wang
Software Mentions: 5
Published: almost 10 years ago

10.1186/s12864-021-07872-z

Grid search approach to discriminate between old and recent inbreeding using phenotypic, pedigree and genomic information
Cited by: 5
Author(s): Pattarapol Sumreddee, El Hamidi Hay, Sajjad Toghiani, Andrew Roberts, Samuel E. Aggrey, Romdhane Rekaya
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2020.548618

Microbiome in Healthy Women Between Two Districts With Different Air Quality Index
Cited by: 8
Author(s): Yinhua Wu, Zujin Wang, Yu Zhang, Li-Ming Ruan, Ang Li, Xiaoyan Liu
Software Mentions: 5
Published: about 4 years ago

10.3389/fmicb.2018.02784

The Influence of Viable Cells and Cell-Free Extracts of Lactobacillus casei on Volatile Compounds and Polyphenolic Profile of Elderberry Juice
Cited by: 17
Author(s): Annalisa Ricci, Alessia Levante, Martina Cirlini, Luca Calani, Valentina Bernini, Daniele Del Rio, Gianni Galaverna, Erasmo Neviani, Camilla Lazzi
Software Mentions: 5
Published: about 6 years ago

10.1007/s10126-021-10033-8

Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions
Cited by: 5
Author(s): Magnus Alm Rosenblad, Anna Abramova, Ulrika Lind, Pall I. Olason, Stefania Giacomello, Björn Nystedt, Anders Blomberg
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2020.02023

Microbial Communities of the Shallow-Water Hydrothermal Vent Near Naples, Italy, and Chemosynthetic Symbionts Associated With a Free-Living Marine Nematode
Cited by: 12
Author(s): Laure Bellec, Marie-Anne Cambon-Bonavita, Lucile Durand, Johanne Aubé, Nicolas Gayet, Roberto Sandulli, Christophe Brandily, Daniela Zeppilli
Software Mentions: 5
Published: over 4 years ago

10.3390/nu13093289

Analyzing Type 2 Diabetes Associations with the Gut Microbiome in Individuals from Two Ethnic Backgrounds Living in the Same Geographic Area
Cited by: 13
Author(s): Manon Balvers, Mélanie Deschasaux, Bert‐Jan H. van den Born, Koos Zwinderman, Max Nieuwdorp, Evgeni Levin
Software Mentions: 5
Published: about 3 years ago

10.3389/fgene.2021.670240

IGFBP2 Is a Potential Master Regulator Driving the Dysregulated Gene Network Responsible for Short Survival in Glioblastoma Multiforme
Cited by: 6
Author(s): Manasa Kalya, Alexander Kel, Darius Wlochowitz, Edgar Wingender, Tim Beißbarth
Software Mentions: 5
Published: over 3 years ago

10.3389/fgene.2020.508809

Putative Epigenetic Biomarkers of Stress in Red Blood Cells of Chickens Reared Across Different Biomes
Cited by: 16
Author(s): Fábio Pértille, A. M. G. Ibelli, Maj El Sharif, Mirele Daiana Poleti, Anna Sophie Fröhlich, Shiva Rezaei, Mônica Corrêa Ledur, Per Jensen, Carlos Guerrero-Bosagna, Luiz Lehmann Coutinho
Software Mentions: 5
Published: about 4 years ago

10.18632/oncotarget.22750

Development of a predictive miRNA signature for breast cancer risk among high-risk women
Cited by: 28
Author(s): Nicholas H. Farina, Jon E. Ramsey, Melissa Cuke, Thomas P. Ahern, David J. Shirley, Janet L. Stein, Gary S. Stein, Jane B. Lian, Marie Wood
Software Mentions: 5
Published: almost 7 years ago

10.1186/1471-2105-13-326

A computational pipeline for the development of multi-marker bio-signature panels and ensemble classifiers
Cited by: 29
Author(s): Oliver P. Günther, Virginia Chen, Gabriela Cohen Freue, Robert Balshaw, Scott J. Tebbutt, Zsuzsanna Hollander, Mandeep Takhar, W. Robert McMaster, Bruce M. McManus, Paul Keown, Raymond T. Ng
Software Mentions: 5
Published: almost 12 years ago

10.3389/fcimb.2018.00043

High-Throughput Quantification of Bacterial-Cell Interactions Using Virtual Colony Counts
Cited by: 10
Author(s): Stefanie Hoffmann, Steffi Walter, Anne-Kathrin Blume, Stephan Fuchs, Christiane Schmidt, Annemarie Scholz, Roman G. Gerlach
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12964-019-0363-1

Systematic expression analysis of ligand-receptor pairs reveals important cell-to-cell interactions inside glioma
Cited by: 31
Author(s): Dongsheng Yuan, Yiran Tao, Geng Chen, Tieliu Shi
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-019-0758-7

Microbiome of vineyard soils is shaped by geography and management
Cited by: 89
Author(s): E. Coller, Alessandro Cestaro, Roberto Zanzotti, D. Bertoldi, Massimo Pindo, Simone Larger, Davide Albanese, E. Mescalchin, Claudio Donati
Software Mentions: 5
Published: about 5 years ago

10.1186/s40168-018-0612-3

Design and application of a novel two-amplicon approach for defining eukaryotic microbiota
Cited by: 16
Author(s): Ana Popović, Céline Bourdon, Pauline W. Wang, David S. Guttman, Wieger Voskuijl, Michael E. Grigg, Robert Bandsma, John Parkinson
Software Mentions: 5
Published: almost 6 years ago

10.3390/ijms20205043

Genome-Wide Identification, Gene Structure and Expression Analysis of the MADS-Box Gene Family Indicate Their Function in the Development of Tobacco (Nicotiana tabacum L.)
Cited by: 18
Author(s): Ge Bai, Da-Hai Yang, Peijian Cao, Huaiying Yao, Yihan Zhang, Xuejun Chen, Bingguang Xiao, Feng Li, Zhenyu Wang, Jun Yang, He Xie
Software Mentions: 5
Published: about 5 years ago

10.3390/ijms20225594

Lipid Related Genes Altered in NASH Connect Inflammation in Liver Pathogenesis Progression to HCC: A Canonical Pathway
Cited by: 19
Author(s): Christophe Desterke, Franck Chiappini
Software Mentions: 5
Published: about 5 years ago

10.3389/fcvm.2021.694238

AKR1C3 and Its Transcription Factor HOXB4 Are Promising Diagnostic Biomarkers for Acute Myocardial Infarction
Cited by: 7
Author(s): Jingjing Liang, Yue Cao, Minqiang He, Weiwen Li, Guan‐Jiang Huang, Tianyi Ma, Meijun Li, Yuli Huang, Xiaohui Huang, Yunzhao Hu
Software Mentions: 5
Published: about 3 years ago

10.3389/fonc.2020.00081

A 6 lncRNA-Based Risk Score System for Predicting the Recurrence of Colon Adenocarcinoma Patients
Cited by: 18
Author(s): Haojie Yang, Hong-Cheng Lin, Lun Hua, Dan Gan, Wei Jin, Can Cui, Yixin Yan, Yiming Qian, Changpeng Han, Zhenyi Wang
Software Mentions: 5
Published: almost 5 years ago

10.1002/ece3.6650

A landscape‐scale assessment of the relationship between grassland functioning, community diversity, and functional traits
Cited by: 7
Author(s): Hanneke van ‘t Veen, Loïc Chalmandrier, Nadine Sandau, Michael P. Nobis, Patrice Descombes, Achilleas Psomas, Yann Hautier, Loïc Pellissier
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0072238

Effect of Doxorubicin/Pluronic SP1049C on Tumorigenicity, Aggressiveness, DNA Methylation and Stem Cell Markers in Murine Leukemia
Cited by: 73
Author(s): Daria Y. Alakhova, Yi Zhao, Shu Li, Alexander V. Kabanov
Software Mentions: 5
Published: over 11 years ago

10.7554/eLife.66018

Information flow, cell types and stereotypy in a full olfactory connectome
Cited by: 82
Author(s): Philipp Schlegel, Alexander Shakeel Bates, Tomke Stürner, Sridhar R. Jagannathan, Nikolas Drummond, Joseph Hsu, Laia Serratosa Capdevila, Alexandre Javier, Elizabeth C. Marin, Asa Barth-Maron, Imaan F M Tamimi, Feng Li, Gerald M. Rubin, Stephen M. Plaza, Marta Costa, Gregory Jefferis
Software Mentions: 5
Published: over 3 years ago

10.1186/s13024-018-0282-4

Deep proteomic network analysis of Alzheimer’s disease brain reveals alterations in RNA binding proteins and RNA splicing associated with disease
Cited by: 147
Author(s): Erik C. B. Johnson, Eric B. Dammer, Duc M. Duong, Luming Yin, Madhav Thambisetty, Juan C. Troncoso, James J. Lah, Aĺlan I. Levey, Nicholas T. Seyfried
Software Mentions: 5
Published: about 6 years ago

10.1186/s13643-021-01738-x

Cognitive interventions in children and adolescents from low socioeconomic status backgrounds: a systematic review protocol of randomized controlled trials
Cited by: 2
Author(s): Rosalba Company-Córdoba, Antonio Sianes, Ian C. Simpson, Joaquín A. Ibáñez-Alfonso
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-019-40479-9

Egg-laying decisions based on olfactory cues enhance offspring fitness in Stomoxys calcitrans L. (Diptera: Muscidae)
Cited by: 21
Author(s): Steve B. S. Baleba, Baldwyn Torto, Daniel K. Masiga, Christopher W. Weldon, Merid N. Getahun
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-019-44254-8

Honey bee predisposition of resistance to ubiquitous mite infestations
Cited by: 17
Author(s): Bart J. G. Broeckx, Lina De Smet, T. Blacquière, Kevin Maebe, Mikalai Khalenkow, Mario Van Poucke, Bjørn Dahle, Peter Neumann, Kim B. Nguyen, Guy Smagghe, Dieter Deforce, Filip Van Nieuwerburgh, Luc Peelman, Dirk C. de Graaf
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-60638-7

Aberrant expression of PAR bZIP transcription factors is associated with epileptogenesis, focus on hepatic leukemia factor
Cited by: 7
Author(s): Lukáš Rambousek, Tilo Gschwind, Carlos Lafourcade, Jean-Charles Paterna, Linda Dib, Jean‐Marc Fritschy, Adriano Fontana
Software Mentions: 5
Published: over 4 years ago

10.1128/mBio.01500-19

Dissecting the Gene Expression, Localization, Membrane Topology, and Function of the Plasmodium falciparum STEVOR Protein Family
Cited by: 38
Author(s): Jan Stephan Wichers, Jochen Scholz, Jan Strauss, Susanne Witt, Andrés Lill, Laura-Isabell Ehnold, Niklas Neupert, Benjamin Liffner, Renke Lühken, Michaela Petter, Stephan Lorenzen, Danny W. Wilson, Christian Löw, Catherine Lavazec, Iris Bruchhaus, Egbert Tannich, Tim‐Wolf Gilberger, Anna Bachmann
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-018-29677-z

Automated analysis of lipid drug-response markers by combined fast and high-resolution whole cell MALDI mass spectrometry biotyping
Cited by: 18
Author(s): David Weigt, Denis A. Sammour, Timon Ulrich, Bogdan Munteanu, Carsten Hopf
Software Mentions: 5
Published: over 6 years ago

10.1128/mBio.02079-16

Merkel Cell Polyomavirus Exhibits Dominant Control of the Tumor Genome and Transcriptome in Virus-Associated Merkel Cell Carcinoma
Cited by: 87
Author(s): Gabriel J. Starrett, Christina Marcelus, Paul G. Cantalupo, Joshua P. Katz, Jingwei Cheng, Keiko Akagi, Manisha Thakuria, Guilherme Rabinowits, Linda C. Wang, David E. Symer, James M. Pipas, Reuben S. Harris, James A. DeCaprio
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-019-49446-w

De novo transcriptome provides insights into the growth behaviour and resveratrol and trans-stilbenes biosynthesis in Dactylorhiza hatagirea - An endangered alpine terrestrial orchid of western Himalaya
Cited by: 19
Author(s): Nisha Dhiman, Nitesh Kumar Sharma, Pooja Thapa, Isha Sharma, Mohit Kumar Swarnkar, Amit Chawla, Ravi Shankar, Amita Bhattacharya
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-021-85735-z

The phylogeographic history of Krascheninnikovia reflects the development of dry steppes and semi-deserts in Eurasia
Cited by: 9
Author(s): Anna Seidl, Karin Tremetsberger, Simon Pfanzelt, Frank R. Blattner, Barbara Neuffer, Nikolai Friesen, Herbert Hurka, А. И. Шмаков, Batlai Oyuntsetseg, Anže Žerdoner Čalasan, Polina V. Vesselova, Karl‐Georg Bernhardt
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-86406-9

Extreme philopatry and genetic diversification at unprecedented scales in a seabird
Cited by: 6
Author(s): D. K. Danckwerts, Laurence Humeau, Patrick Pinet, Christopher D. McQuaid, Matthieu Le Corre
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-91625-1

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19
Cited by: 24
Author(s): Brian Le, Gaia Andreoletti, Tomiko Oskotsky, Albert Vallejo-Gracia, Romel Rosales, Katharine Yu, Idit Kosti, Kristoffer E. Leon, Daniel Bunis, Christine Li, G. Renuka Kumar, Kris M. White, Adolfo Garcı́a-Sastre, Mélanie Ott, Marina Sirota
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-91824-w

Lack of detectable genetic isolation in the cyclic rodent Microtus arvalis despite large landscape fragmentation owing to transportation infrastructures
Cited by: 4
Author(s): Julio Domínguez, María Calero‐Riestra, Pedro P. Olea, Juan E. Malo, Christopher P. Burridge, Kirstin Proft, Sonia Illanas, Javier Viñuela, Jesús T. García
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-93552-7

Electrophysiological characterization of a diverse group of sugar transporters from Trichoderma reesei
Cited by: 7
Author(s): Sami Havukainen, Jonai Pujol‐Giménez, Mari Valkonen, Ann Westerholm-Parvinen, Matthias A. Hediger, Christopher P. Landowski
Software Mentions: 4
Published: over 3 years ago

10.3390/s140815348

Intra-and-Inter Species Biomass Prediction in a Plantation Forest: Testing the Utility of High Spatial Resolution Spaceborne Multispectral RapidEye Sensor and Advanced Machine Learning Algorithms
Cited by: 104
Author(s): Timothy Dube, Onisimo Mutanga, Elhadi Adam, Riyad Ismail
Software Mentions: 4
Published: over 10 years ago

10.4049/jimmunol.1602033

Integration of Kinase and Calcium Signaling at the Level of Chromatin Underlies Inducible Gene Activation in T Cells
Cited by: 45
Author(s): Ruth Brignall, Pierre Cauchy, Sarah L Bevington, Bethany Gorman, Angela Oliveira Pisco, James Bagnall, Christopher Boddington, William Rowe, Hazel England, Kevin Rich, Lorraine Schmidt, Nigel P. Dyer, Mark A. Travis, Sascha Ott, Dean A. Jackson, Peter N. Cockerill, Pawel Paszek
Software Mentions: 4
Published: about 7 years ago

10.1111/tgis.12456

Compactly representing massive terrain models as TINs in CityGML
Cited by: 9
Author(s): Kavisha Kumar, Hugo Ledoux, J.E. Stoter
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-019-51056-5

Down-regulation of CK2α correlates with decreased expression levels of DNA replication minichromosome maintenance protein complex (MCM) genes
Cited by: 4
Author(s): Susanne Schaefer, Thomas Koed Doktor, Sabrina B Frederiksen, Kathleen Chea, Mirka Hlavacova, Georg M. Bruun, Maj Rabjerg, Brage S. Andresen, Isabel Domı́nguez, Bárbara Guerra
Software Mentions: 4
Published: about 5 years ago

10.1084/jem.20190730

Single-cell profiling reveals an endothelium-mediated immunomodulatory pathway in the eye choroid
Cited by: 47
Author(s): Guillermo L. Lehmann, Christin Hanke-Gogokhia, Yang Hu, Rohan Bareja, Zelda Salfati, Michael Ginsberg, Daniel J. Nolan, Santiago P. Méndez-Huergo, Tomás Dalotto-Moreno, Alexandre Wojcinski, Francisca Ochoa, Siyuan Zeng, Juan P. Cerliani, Lampros Panagis, Patrick J. Zager, Robert F. Mullins, Shuntaro Ogura, Gerard A. Lutty, Jakyung Bang, Jonathan H. Zippin, Carmelo Romano, Gabriel A. Rabinovich, Olivier Elemento, Alexandra L. Joyner, Shahin Rafii, Enrique Rodríguez-Boulan, Ignacio Benedicto
Software Mentions: 4
Published: over 4 years ago

10.3390/ijerph17114047

Short-Term Effects of Ambient Ozone, PM2.5, and Meteorological Factors on COVID-19 Confirmed Cases and Deaths in Queens, New York
Cited by: 146
Author(s): Atin Adhikari, Jingjing Yin
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-018-30089-2

Predictive ability of genome-assisted statistical models under various forms of gene action
Cited by: 34
Author(s): Mehdi Momen, Ahmad Ayatollahi Mehrgardi, Ayyub Sheikhi, Andreas Kranis, Llibertat Tusell, Gota Morota, Guilherme J. M. Rosa, Daniel Gianola
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-77063-5

Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance
Cited by: 18
Author(s): Alexandre Hild Aono, Everardo Andrade da Costa, Hugo Vianna Silva Rody, James Shiniti Nagai, Ricardo José Gonzaga Pimenta, Melina Cristina Mancini, Fernanda Raquel Camilo dos Santos, Luciana Rossini Pinto, Marcos Guimarães de Andrade Landell, Anete Pereira de Souza, Reginaldo Massanobu Kuroshu
Software Mentions: 4
Published: about 4 years ago

10.1038/srep20518

Discovering gene re-ranking efficiency and conserved gene-gene relationships derived from gene co-expression network analysis on breast cancer data
Cited by: 27
Author(s): Marilena M. Bourdakou, Emmanouil Athanasiadis, George M. Spyrou
Software Mentions: 4
Published: almost 9 years ago

10.1002/ece3.6635

Genetic structuring among colonies of a pantropical seabird: Implication for subspecies validation and conservation
Cited by: 4
Author(s): Laurence Humeau, Matthieu Le Corre, Stuart F. Reynolds, Colin P. Wearn, Janos C. Hennicke, James C. Russell, Yann Gomard, Hélène Magalon, Patrick Pinet, Pauline Gélin, François Xavier Couzi, E. Bemanaja, Vikash Tatayah, Ousseni Bacar, Gérard Rocamora, Patrick Talbot, Nirmal Shah, Leandro Bugoni, Denis Da Silva, A. Jaeger
Software Mentions: 4
Published: about 4 years ago

10.21203/rs.3.rs-333578/v1

Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19
Cited by: 2
Author(s): Brian Le, Gaia Andreoletti, Tomiko Oskotsky, Albert Vallejo-Gracia, Romel Rosales, Katharine Yu, Idit Kosti, Kristoffer E. Leon, Daniel Bunis, Christine Li, G. Renuka Kumar, Kris M. White, Adolfo Garcı́a-Sastre, Mélanie Ott, Marina Sirota
Software Mentions: 4
Published: over 3 years ago

10.1002/ece3.660

Investigating sex-specific dynamics using uniparental markers: West New Guinea as a case study
Cited by: 4
Author(s): Stefano Mona, Ernest Mordret, Michel Veuille, Mila Tommaseo-Ponzetta
Software Mentions: 4
Published: over 11 years ago

10.1002/ece3.7501

Interactive effects of body mass changes and species‐specific morphology on flight behavior of chick‐rearing Antarctic fulmarine petrels under diurnal wind patterns
Cited by: 5
Author(s): Nina Dehnhard, Andrew Klekociuk, Louise Emmerson
Software Mentions: 4
Published: over 3 years ago

10.1186/1471-2105-8-456

The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications
Cited by: 33
Author(s): J. Christopher Bare, Paul Shannon, Amy K. Schmid, Nitin S. Baliga
Software Mentions: 4
Published: about 17 years ago

10.1002/ece3.7711

Environmental filtering and dispersal limitation jointly shaped the taxonomic and phylogenetic beta diversity of natural forests in southern China
Cited by: 15
Author(s): Wei Shi, Yongqiang Wang, Wenhua Xiang, Xiankun Li, Kaihua Cao
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0208263

QTM: Computational package using MPI protocol for Quantum Trajectories Method
Cited by: 1
Author(s): Marek Sawerwain, Joanna Wiśniewska
Software Mentions: 4
Published: almost 6 years ago

10.1155/2014/914767

<i>Geodermatophilus poikilotrophi</i>sp. nov.: A Multitolerant Actinomycete Isolated from Dolomitic Marble
Cited by: 32
Author(s): María del Carmen Montero-Calasanz, Benjamin Hofner, Markus Göker, Manfred Rohde, Cathrin Spröer, Karima Hezbri, Maher Gtari, Peter Schümann, Hans‐Peter Klenk
Software Mentions: 4
Published: almost 11 years ago

10.1002/bimj.202000112

Nowcasting the COVID‐19 pandemic in Bavaria
Cited by: 54
Author(s): Felix Günther, Andreas Bender, Katharina Katz, Helmut Küchenhoff, Michael Höhle
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0247055

Statistical meta-analysis to investigate the association between the Interleukin-6 (IL-6) gene polymorphisms and cancer risk
Cited by: 16
Author(s): Md. Harun-Or-Roshid, Md. Borqat Ali, Jesmin, Md. Nurul Haque Mollah
Software Mentions: 4
Published: over 3 years ago

10.1093/gigascience/giy118

Extensive evaluation of the generalized relevance network approach to inferring gene regulatory networks
Cited by: 5
Author(s): Vladimir Kuzmanovski, Ljupčo Todorovski, Sašo Džeroski
Software Mentions: 4
Published: about 6 years ago

10.3390/biology10020072

Plant Endemism Centres and Biodiversity Hotspots in Greece
Cited by: 45
Author(s): Konstantinos Kougioumoutzis, Ioannis Kokkoris, Maria Panitsa, Athanasios S. Kallimanis, Arne Strid, Panayotis Dimopoulos
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0172829

Small rodents as paratenic or intermediate hosts of carnivore parasites in Berlin, Germany
Cited by: 27
Author(s): Jürgen Krücken, Julia Blümke, Denny Maaz, Janina Demeler, Sabrina Ramünke, Daniela Antolová, Roland Schaper, Georg von Samson‐Himmelstjerna
Software Mentions: 4
Published: over 7 years ago

10.1002/ece3.3699

Spatial and temporal genetic dynamics of the grasshopper <i>Oedaleus decorus</i> revealed by museum genomics
Cited by: 14
Author(s): Sarah Schmid, Samuel Neuenschwander, Camille Pitteloud, Gerald Heckel, Mila Pajkovic, Raphaël Arlettaz, Nadir Alvarez
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0180236

An adjustable predictive score of graft survival in kidney transplant patients and the levels of risk linked to de novo donor-specific anti-HLA antibodies
Cited by: 14
Author(s): Aurélie Prémaud, Matthieu Filloux, Philippe Gatault, Antoine Thierry, Matthias Büchler, E Munteanu, Pierre Marquet, Marie Essig, Annick Rousseau
Software Mentions: 4
Published: over 7 years ago

10.1186/1471-2105-9-164

A comprehensive re-analysis of the Golden Spike data: Towards a benchmark for differential expression methods
Cited by: 32
Author(s): Richard D. Pearson
Software Mentions: 4
Published: over 16 years ago

10.1002/ece3.7526

Habitat fragmentation and vegetation structure impact gastrointestinal parasites of small mammalian hosts in Madagascar
Cited by: 7
Author(s): Frederik Kiene, Bertrand Andriatsitohaina, Malcolm S. Ramsay, Romule Rakotondravony, Christina Strübe, Ute Radespiel
Software Mentions: 4
Published: over 3 years ago

10.1002/ece3.5032

Dissimilarity of individual microsatellite profiles under different mutation models: Empirical approach
Cited by: 12
Author(s): Evsey Kosman, Jukka Jokela
Software Mentions: 4
Published: over 5 years ago

10.1186/2049-1891-3-8

Current status and future perspectives for sequencing livestock genomes
Cited by: 40
Author(s): Yongsheng Bai, Maureen A. Sartor, James D. Cavalcoli
Software Mentions: 4
Published: over 12 years ago

10.15252/emmm.201708202

A proteomic network approach across the <scp>ALS</scp> ‐ <scp>FTD</scp> disease spectrum resolves clinical phenotypes and genetic vulnerability in human brain
Cited by: 115
Author(s): Mfon Umoh, Eric B. Dammer, Jingting Dai, Duc M. Duong, James J. Lah, Aĺlan I. Levey, Marla Gearing, Jonathan D. Glass, Nicholas T. Seyfried
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12893-020-00856-y

Five gene signatures were identified in the prediction of overall survival in resectable pancreatic cancer
Cited by: 8
Author(s): Chao Wu, Zuowei Wu, Bole Tian
Software Mentions: 4
Published: about 4 years ago

10.3390/ani10112123

Social Network Analysis of Agonistic Behaviour and Its Association with Economically Important Traits in Pigs
Cited by: 8
Author(s): Saif Agha, E. Fábrega, Raquel Quintanilla, Juan Pablo Sánchez
Software Mentions: 4
Published: about 4 years ago

10.1002/eco.1827

The effects of catchment and riparian forest quality on stream environmental conditions across a tropical rainforest and oil palm landscape in Malaysian Borneo
Cited by: 55
Author(s): Sarah H. Luke, Holly Barclay, Kawi Bidin, Chey Vun Khen, Robert M. Ewers, William A. Foster, Anand Nainar, Marion Pfeifer, Glen Reynolds, Edgar C. Turner, R. P. D. Walsh, David C. Aldridge
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pgen.1008181

Hepatitis C virus leaves an epigenetic signature post cure of infection by direct-acting antivirals
Cited by: 101
Author(s): Shira Perez, Antony Kaspi, Tom Domovitz, Ateret Davidovich, Anat Lavi-Itzkovitz, Tomer Meirson, Jacinta A Holmes, Chia Yen Dai, Chung Feng Huang, Raymond T. Chung, Nimer Assy, Assam El‐Osta, Gur Yaari, Salomon M. Stemmer, Ming‐Lung Yu, Izhak Haviv, Meital Gal-Tanamy
Software Mentions: 4
Published: over 5 years ago

10.1186/gb-2011-12-3-r27

A genome-wide view of mutation rate co-variation using multivariate analyses
Cited by: 38
Author(s): Guruprasad Ananda, Francesca Chiaromonte, Kateryna D. Makova
Software Mentions: 4
Published: almost 14 years ago

10.1186/s12862-020-01739-9

Genomic variation in the American pika: signatures of geographic isolation and implications for conservation
Cited by: 4
Author(s): Kelly B. Klingler, Joshua P. Jahner, Thomas L. Parchman, Chris Ray, Mary M. Peacock
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pntd.0008945

Multi-locus genotyping reveals established endemicity of a geographically distinct Plasmodium vivax population in Mauritania, West Africa
Cited by: 7
Author(s): Hampaté Bâ, Sarah Auburn, Christopher G Jacob, Sónia Gonçalves, Craig W. Duffy, Lindsay B. Stewart, Ric N. Price, Yacine Boubou Deh, M. Diallo, Abderahmane Tandia, Dominic Kwiatkowski, David J. Conway
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12888-018-1741-8

Prevalence of depression or depressive symptoms among people living with HIV/AIDS in China: a systematic review and meta-analysis
Cited by: 68
Author(s): Tingting Wang, Hanlin Fu, Atipatsa Chiwanda Kaminga, Zhanzhan Li, Gangqiang Guo, Lizhang Chen, Qiongxuan Li
Software Mentions: 4
Published: over 6 years ago

10.18632/aging.101170

Metabolomic signature associated with reproduction-regulated aging in Caenorhabditis elegans
Cited by: 39
Author(s): Qin-Li Wan, Xiaohuo Shi, Jiangxin Liu, Aijun Ding, Yuan-Zhu Pu, Zhigang Li, Gui-Sheng Wu, Huai‐Rong Luo
Software Mentions: 4
Published: almost 8 years ago

10.1038/s42003-020-0804-9

Transcriptomic signatures of brain regional vulnerability to Parkinson’s disease
Cited by: 55
Author(s): Arlin Keo, Ahmed Mahfouz, Angela Ingrassia, Jean Pascal Meneboo, Céline Villenet, Eugénie Mutez, Thomas Comptdaer, Boudewijn P. F. Lelieveldt, Martin Figeac, Marie-Christine Chartier-Harlin, Wilma D. J. van de Berg, Jacobus J. van Hilten, Marcel J. T. Reinders
Software Mentions: 4
Published: over 4 years ago

10.1186/s13059-019-1918-6

Enteric infection induces Lark-mediated intron retention at the 5′ end of Drosophila genes
Cited by: 4
Author(s): Maroun Bou Sleiman, Michael Frochaux, Tommaso Andreani, Dani Osman, Roderic Guigó, Bart Deplancke
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pcbi.1003480

GAGA: A New Algorithm for Genomic Inference of Geographic Ancestry Reveals Fine Level Population Substructure in Europeans
Cited by: 9
Author(s): Oscar Lao, Fan Liu, Andreas Wollstein, Manfred Kayser
Software Mentions: 4
Published: almost 11 years ago

10.1186/1471-2105-15-246

Rapid screening for phenotype-genotype associations by linear transformations of genomic evaluations
Cited by: 55
Author(s): José Luis Gualdrón Duarte, Rodolfo Juan Carlos Cantet, R. O. Bates, Catherine W. Ernst, Nancy E. Raney, Juan P. Steibel
Software Mentions: 4
Published: over 10 years ago

10.1186/s12884-020-03150-0

Spiral artery blood flow during pregnancy: a systematic review and meta-analysis
Cited by: 6
Author(s): V. Schiffer, Laura Evers, Sander de Haas, Chahinda Ghossein‐Doha, Salwan Al‐Nasiry, Marc E. A. Spaanderman
Software Mentions: 4
Published: about 4 years ago

10.3390/cancers13040851

Network Analysis Identifies Drug Targets and Small Molecules to Modulate Apoptosis Resistant Cancers
Cited by: 6
Author(s): Samreen Fathima, Swati Sinha, Sainitin Donakonda
Software Mentions: 4
Published: almost 4 years ago

10.3390/cancers13174483

Prognostic and Therapeutic Potential of the OIP5 Network in Papillary Renal Cell Carcinoma
Cited by: 6
Author(s): Mathilda Jing Chow, Yan Gu, Lizhi He, Xiaozeng Lin, Ying Dong, Wenjuan Mei, Anil Kapoor, Damu Tang
Software Mentions: 4
Published: about 3 years ago

10.1186/s12870-021-02980-0

Genetic diversity structure of western-type carrots
Cited by: 7
Author(s): Katarzyna Stelmach, Alicja Macko-Podgórni, Charlotte J. Allender, Dariusz Grzebelus
Software Mentions: 4
Published: over 3 years ago

10.1038/bcj.2016.77

lncRNA profiling in early-stage chronic lymphocytic leukemia identifies transcriptional fingerprints with relevance in clinical outcome
Cited by: 40
Author(s): Domenica Ronchetti, Martina Manzoni, Luca Agnelli, Cristina Vinci, Sonia Fabris, Giovanna Cutrona, Serena Matis, Monica Colombo, S. Galletti, Elisa Taìana, Anna Grazia Recchia, Sabrina Bossio, Massimo Gentile, Caterina Musolino, Francesco Di Raimondo, Andrea Grilli, Silvio Bicciato, Agostino Cortelezzi, Pierfrancesco Tassone, Fortunato Morabito, Manlio Ferrarini, Antonino Neri
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pgen.1005869

The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster
Cited by: 44
Author(s): Nicolas Svetec, Julie M. Cridland, Li Zhao, David J. Begun
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pntd.0005568

Detecting the impact of temperature on transmission of Zika, dengue, and chikungunya using mechanistic models
Cited by: 387
Author(s): Erin A. Mordecai, Jeremy M. Cohen, Michelle V. Evans, Prithvi Gudapati, Leah R. Johnson, Catherine A. Lippi, Kerri L. Miazgowicz, Courtney C. Murdock, Jason R. Rohr, Sadie J. Ryan, Van M. Savage, Marta S. Shocket, Anna Stewart Ibarra, Matthew B. Thomas, Daniel P. Weikel
Software Mentions: 4
Published: over 7 years ago

10.3390/cancers13051109

Bacterial, Archaea, and Viral Transcripts (BAVT) Expression in Gynecological Cancers and Correlation with Regulatory Regions of the Genome
Cited by: 6
Author(s): Jesús González Bosquet, Silvana Pedra-Nobre, Eric J. Devor, Kristina W. Thiel, Michael J. Goodheart, David Bender, Kimberly K. Leslie
Software Mentions: 4
Published: over 3 years ago

10.3390/genes12070952

Identification of Key Metabolic Pathways and Biomarkers Underlying Flowering Time of Guar (Cyamopsis tetragonoloba (L.) Taub.) via Integrated Transcriptome-Metabolome Analysis
Cited by: 4
Author(s): Elizaveta Grigoreva, А.А. Ткаченко, Serafima Arkhimandritova, Aleksandar Beatovic, Pavel Ulianich, В. А. Волков, Dmitry Karzhaev, Cécile Ben, Laurent Gentzbittel, Elena Potokina
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.08851

Maternal LSD1/KDM1A is an essential regulator of chromatin and transcription landscapes during zygotic genome activation
Cited by: 99
Author(s): Katia Ancelin, Laurène Syx, Maud Borensztein, Noémie Ranisavljevic, Ivaylo Vassilev, Luis Briseño-Roa, Tao Liu, Eric Metzger, Nicolas Servant, Emmanuel Barillot, Chongjian Chen, Roland Schüle, Edith Heard
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0122143

Integrative Analysis of Normal Long Intergenic Non-Coding RNAs in Prostate Cancer
Cited by: 27
Author(s): Pushpinder Bawa, Sajna Zackaria, Mohit Verma, Saurabh Gupta, Srivatsan Raghunathan, Bibha Chaudhary, Subhashini Srinivasan
Software Mentions: 4
Published: over 9 years ago

10.1111/tpj.14299

Hybrid sequencing reveals insight into heat sensing and signaling of bread wheat
Cited by: 46
Author(s): Xiaoming Wang, Siyuan Chen, Song Xue, Danni Liu, Peng Zhao, Yunze Lu, Yanbing Cheng, Zhenshan Liu, Xiaojun Nie, Weining Song, Qixin Sun, Shengbao Xu, Chuang Ma
Software Mentions: 4
Published: over 5 years ago

10.1534/g3.119.400336

A Bayesian Genomic Multi-output Regressor Stacking Model for Predicting Multi-trait Multi-environment Plant Breeding Data
Cited by: 20
Author(s): Osval A. Montesinos-L֯ópez, Abelardo Montesinos‐López, J. Crossa, Jaime Cuevas, J. Cricelio Montesinos-López, Zitlalli Salas Gutiérrez, Morten Lillemo, Philomin Juliana, Ravi P. Singh
Software Mentions: 4
Published: about 5 years ago

10.7717/peerj.8421

Glycerophosphodiester phosphodiesterase 1 (GDE1) acts as a potential tumor suppressor and is a novel therapeutic target for non-mucin-producing colon adenocarcinoma
Cited by: 2
Author(s): Shen Qiu, Chen Lü, Hua Yang, Ming-Xia Ge, Wangxiao Xia, Qing‐Peng Kong, Gong‐Hua Li, Yanhong Gu
Software Mentions: 4
Published: almost 5 years ago

10.1186/1471-2407-14-977

Identification of a candidate prognostic gene signature by transcriptome analysis of matched pre- and post-treatment prostatic biopsies from patients with advanced prostate cancer
Cited by: 41
Author(s): Prabhakar Rajan, Jacqueline Stockley, Ian Sudbery, Janis Fleming, Ann Hedley, Gabriela Kalna, David Sims, Chris P. Ponting, Andreas Heger, Craig Robson, R. McMenemin, Ian Pedley, Hing Y. Leung
Software Mentions: 4
Published: almost 10 years ago

10.1002/advs.201903438

Medical Gas Plasma Jet Technology Targets Murine Melanoma in an Immunogenic Fashion
Cited by: 75
Author(s): Sander Bekeschus, Ramona Clemen, Felix Nießner, Sanjeev Kumar Sagwal, Eric Freund, Anke Schmidt
Software Mentions: 4
Published: over 4 years ago

10.3389/fpls.2021.670302

CRISPR/Cas9-Induced Loss-of-Function Mutation in the Barley Mitogen-Activated Protein Kinase 6 Gene Causes Abnormal Embryo Development Leading to Severely Reduced Grain Germination and Seedling Shootless Phenotype
Cited by: 8
Author(s): Pavel Křenek, Elizaveta Chubar, Pavol Vadovič, Ludmila Ohnoutková, Tomáš Vlčko, Véronique Bergougnoux, Petr Cápal, Miroslav Ovečka, Jozef Šamaj
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0194056

Genetic structure of wild pea (Pisum sativum subsp. elatius) populations in the northern part of the Fertile Crescent reflects moderate cross-pollination and strong effect of geographic but not environmental distance
Cited by: 59
Author(s): Petr Smýkal, Oldřich Trněný, Jan Brus, Pavel Hanáček, Abhishek Rathore, Rani Das Roma, Vilém Pechanec, Martin Duchoslav, Debjyoti Bhattacharyya, Michael Bariotakis, Stergios Pirintsos, Jens Berger, Cengiz Toker
Software Mentions: 4
Published: over 6 years ago

Projects: pypi: package

Papers Mentioning package 1,300