pypi: numpy | Projects | Ecosyste.ms: Papers

10.3389/fnsys.2016.00054

Oculomotor Remapping of Visual Information to Foveal Retinotopic Cortex
Cited by: 19
Author(s): Tomas Knapen, Jascha D. Swisher, Frank Tong, Patrick Cavanagh
Software Mentions: 2
Published: over 8 years ago

10.1186/s12920-020-0717-y

Achieving GWAS with homomorphic encryption
Cited by: 15
Author(s): Jun Jie Sim, Fook Mun Chan, Shibin Chen, Benjamin Hong Meng Tan, Khin Mi Mi Aung
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-017-3898-9

Predicting RNA hyper-editing with a novel tool when unambiguous alignment is impossible
Cited by: 1
Author(s): Wilson McKerrow, Yiannis A. Savva, Ali Rezaei, Robert A. Reenan, Charles E. Lawrence
Software Mentions: 2
Published: over 7 years ago

10.1093/gigascience/giab056

DeePhage: distinguishing virulent and temperate phage-derived sequences in metavirome data with a deep learning approach
Cited by: 21
Author(s): Shu‐Fang Vivienne Wu, Zhencheng Fang, Jie Tan, Mo Li, Chunhui Wang, Qian Guo, Congmin Xu, Xiaoqing Jiang, Huaiqiu Zhu
Software Mentions: 2
Published: about 3 years ago

10.1093/jamiaopen/ooaa006

Machine learning for early detection of sepsis: an internal and temporal validation study
Cited by: 44
Author(s): Armando Bedoya, Joseph Futoma, Meredith E. Clement, Kristin Corey, Nathan Brajer, Anthony Lin, Morgan G. Simons, Michael Gao, Marshall Nichols, Suresh Balu, Katherine Heller, Mark Sendak, Cara O’Brien
Software Mentions: 2
Published: over 4 years ago

10.1107/S1600576714008073

A suite of software for processing MicroED data of extremely small protein crystals
Cited by: 15
Author(s): M.G. Iadanza, Tamir Gonen
Software Mentions: 2
Published: over 10 years ago

10.1117/1.JBO.26.3.038002

Potential of subdermal solar energy harvesting for medical device applications based on worldwide meteorological data
Cited by: 2
Author(s): Maximilien Tholl, Adrian Zurbuchen, Hildegard Tanner, Andreas Haeberlin
Software Mentions: 2
Published: over 3 years ago

10.1007/s10858-013-9787-x

Amplitudes and time scales of picosecond-to-microsecond motion in proteins studied by solid-state NMR: a critical evaluation of experimental approaches and application to crystalline ubiquitin
Cited by: 67
Author(s): Jens D. Haller, Paul Schanda
Software Mentions: 2
Published: about 11 years ago

10.1177/0271678X20916003

Neurochemical underpinning of hemodynamic response to neuropsychiatric drugs: A meta- and cluster analysis of preclinical studies
Cited by: 2
Author(s): Lewis Mervin, Ekaterina Mitricheva, Nikos K. Logothetis, Angelo Bifone, Andreas Bender, Hamid Noori
Software Mentions: 2
Published: over 4 years ago

10.1186/1758-2946-3-10

Review of "Data Analysis with Open Source Tools" by Philipp K Janert
Cited by: 3
Author(s): Noel M. O’Boyle
Software Mentions: 2
Published: over 13 years ago

10.1186/s12885-016-2660-z

Thresholds and timing of pre-operative thrombocytosis and ovarian cancer survival: analysis of laboratory measures from electronic medical records
Cited by: 11
Author(s): Gabriella D. Cozzi, Jacob M. Samuel, Jason T. Fromal, Spencer Keene, Marta A. Crispens, Dineo Khabele, Alicia Beeghly–Fadiel
Software Mentions: 2
Published: over 8 years ago

10.2196/11486

The Association Between Medication Adherence for Chronic Conditions and Digital Health Activity Tracking: Retrospective Analysis
Cited by: 24
Author(s): Tom Quisel, Luca Foschini, Susan M. Zbikowski, Jessie Juusola
Software Mentions: 2
Published: over 5 years ago

10.1098/rsos.150274

Predicting the outcome of competition when fitness inequality is variable
Cited by: 9
Author(s): Michael T. Pedruski, Gregor F. Fussmann, Andrew Gonzalez
Software Mentions: 2
Published: over 9 years ago

10.1098/rsos.172434

Machine learning methods for locating re-entrant drivers from electrograms in a model of atrial fibrillation
Cited by: 21
Author(s): Max Falkenberg, William Cheng, Nicholas S. Peters, Kim Christensen
Software Mentions: 2
Published: over 6 years ago

10.1186/s12974-020-01860-y

Evaluation of M2-like macrophage enrichment after diffuse traumatic brain injury through transient interleukin-4 expression from engineered mesenchymal stromal cells
Cited by: 27
Author(s): Syed Faaiz Enam, Sajidur Rahman Kader, Nicholas Bodkin, Johnathan G. Lyon, Mark Calhoun, Cesar Azrak, Pooja Tiwari, Daryll Vanover, Haichen Wang, Philip J. Santangelo, Ravi V. Bellamkonda
Software Mentions: 2
Published: over 4 years ago

10.1038/s41597-019-0019-4

Synthesis, optical imaging, and absorption spectroscopy data for 179072 metal oxides
Cited by: 12
Author(s): Helge S. Stein, Edwin Soedarmadji, Paul F. Newhouse, Dan Guevarra, John M. Gregoire
Software Mentions: 2
Published: over 5 years ago

10.1038/s41597-020-00631-x

PPDIST, global 0.1° daily and 3-hourly precipitation probability distribution climatologies for 1979–2018
Cited by: 12
Author(s): Hylke E. Beck, Seth Westra, Jackson Tan, Florian Pappenberger, George J. Huffman, Tim R. McVicar, Gaby Gründemann, Noemi Vergopolan, Hayley J. Fowler, Elizabeth Lewis, Koen Verbist, Eric F. Wood
Software Mentions: 2
Published: about 4 years ago

10.1038/srep15084

Distinct roles of the RasGAP family proteins in C. elegans associative learning and memory
Cited by: 18
Author(s): Marton David Gyurko, Péter Csermely, Csaba Söti, Attila Steták
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2105-15-292

Native structure-based modeling and simulation of biomolecular systems per mouse click
Cited by: 6
Author(s): Benjamin Lutz, Claude Sinner, S. Bozic, Ivan Kondov, Alexander Schug
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-017-08366-3

Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins
Cited by: 35
Author(s): Daniele Raimondi, Gabriele Orlando, Rita Pancsa, Taushif Khan, Wim Vranken
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-017-17505-9

Profiling invasive Plasmodium falciparum merozoites using an integrated omics approach
Cited by: 9
Author(s): Krishan Kumar, Prakash Srinivasan, Michael Nold, J. Kathleen Moch, Karine Reiter, Dan E. Sturdevant, Thomas D. Otto, R. Burke Squires, Raúl Herrera, Vijayaraj Nagarajan, Julian C. Rayner, Stephen F. Porcella, Scott Geromanos, J. David Haynes, David L. Narum
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-23534-9

Extracting biological age from biomedical data via deep learning: too much of a good thing?
Cited by: 78
Author(s): Timothy V. Pyrkov, Konstantin Slipensky, Mikhail Barg, Alexey Kondrashin, Boris Zhurov, Aleksandr Zenin, Mikhail A. Pyatnitskiy, L. I. Men’shikov, Sergei Markov, П. О. Федичев
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-40459-z

Correcting locomotion dependent observation biases in thermal preference of Drosophila
Cited by: 10
Author(s): Diego Giraldo, Andrea Adden, Ilyas Kuhlemann, Heribert Gras, Bart R. H. Geurten
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-44272-6

Y-chromosomal connection between Hungarians and geographically distant populations of the Ural Mountain region and West Siberia
Cited by: 9
Author(s): Helen Post, Endre Németh, László Klima, Rodrigo Flores, Tamás Fehér, Attila Türk, Gábor Székely, Hovhannes Sahakyan, Mayukh Mondal, Francesco Montinaro, Monika Karmin, Lauri Saag, Bayazit Yunusbayev, Elza Khusnutdinova, Ene Metspalu, Richard Villems, Kristiina Tambets, Siiri Rootsi
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-50234-9

Generalizing the inverse FFT off the unit circle
Cited by: 14
Author(s): Vladimir Sukhoy, Alexander Stoytchev
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-019-53682-5

The Role of Parvalbumin-positive Interneurons in Auditory Steady-State Response Deficits in Schizophrenia
Cited by: 11
Author(s): Christoph Metzner, Bartosz Zurowski, Volker Steuber
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-65112-y

Nonlinear Analysis of Visually Normal EEGs to Differentiate Benign Childhood Epilepsy with Centrotemporal Spikes (BECTS)
Cited by: 12
Author(s): Aarti Sathyanarayana, Rima El Atrache, Michele Jackson, Aliza S. Alter, Kenneth D. Mandl, Tobias Loddenkemper, William J. Bosl
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-65757-9

Full Spectrum Raman Excitation Mapping Spectroscopy
Cited by: 10
Author(s): Paul Finnie, Jianying Ouyang, Laurent Jacques
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-69730-4

Three-dimensional bright-field microscopy with isotropic resolution based on multi-view acquisition and image fusion reconstruction
Cited by: 5
Author(s): Gianmaria Calisesi, Alessia Candeo, Andrea Farina, Cosimo D’Andrea, V. Magni, Gianluca Valentini, Anna Pistocchi, Alex Costa, Andrea Bassi
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-72413-9

Synchrotron-based FTIR microspectroscopy of protein aggregation and lipids peroxidation changes in human cataractous lens epithelial cells
Cited by: 12
Author(s): Martin Kreuzer, Tanja Dučić, Marko Hawlina, Sofija Andjelić
Software Mentions: 2
Published: about 4 years ago

10.1186/s12859-016-1015-8

BAGEL: a computational framework for identifying essential genes from pooled library screens
Cited by: 205
Author(s): Traver Hart, Jason Moffat
Software Mentions: 2
Published: over 8 years ago

10.1186/s12859-020-03951-2

GECO: gene expression clustering optimization app for non-linear data visualization of patterns
Cited by: 4
Author(s): Amber N. Habowski, T. J. Habowski, Marian L. Waterman
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-84077-0

The concerted emergence of well-known spatial and temporal ecological patterns in an evolutionary food web model in space
Cited by: 6
Author(s): Michaela Hamm, Barbara Drossel
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-86790-2

Hierarchical carrier transport simulator for defected nanoparticle solids
Cited by: 2
Author(s): Chase Hansen, Davis Unruh, Miguel Alba, Caroline Qian, Alex Abelson, Matt Law, Gergely T. Zimányi
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-91056-y

Common neurobiological correlates of resilience and personality traits within the triple resting-state brain networks assessed by 7-Tesla ultra-high field MRI
Cited by: 8
Author(s): Dilsa Cemre Akkoc Altinok, Ravichandran Rajkumar, Dominik Nießen, Hasan Sbaihat, Margo Kersey, N. Jon Shah, Tanja Veselinović, Irene Neuner
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-92146-7

Multivariable mortality risk prediction using machine learning for COVID-19 patients at admission (AICOVID)
Cited by: 38
Author(s): Sujoy Kumar Kar, Rajesh Chawla, Sai Praveen Haranath, Suresh Ramasubban, Nagarajan Ramakrishnan, Raju Vaishya, Anupam Sibal, Sangita Reddy
Software Mentions: 2
Published: over 3 years ago

10.18632/oncotarget.27027

The landscape of novel and complementary targets for immunotherapy: an analysis of gene expression in the tumor microenvironment
Cited by: 8
Author(s): Stephen G. Gaffney, Elizabeth B. Perry, Ping-Min Chen, Andrew E. Greenstein, Susan M. Kaech, Jeffrey P. Townsend
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-93505-0

An experimentally informed statistical elasto-plastic mineralised collagen fibre model at the micrometre and nanometre lengthscale
Cited by: 8
Author(s): Alexander Groetsch, Philippe Zysset, П. Варга, Alexandra Pacureanu, Françoise Peyrin, Uwe Wolfram
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-96370-z

Tandem domain structure determination based on a systematic enumeration of conformations
Cited by: 2
Author(s): Thérèse E. Malliavin
Software Mentions: 2
Published: over 3 years ago

10.3390/s19132903

Speckle Noise Filtering in Side-Scan Sonar Images Based on the Tucker Tensor Decomposition
Cited by: 13
Author(s): Jakub Grabek, Bogusław Cyganek
Software Mentions: 2
Published: over 5 years ago

10.3390/s20051428

PACO: Python-Based Atmospheric Correction
Cited by: 18
Author(s): R. de los Reyes, Maximilian Langheinrich, Peter Schwind, Rudolf Richter, Bringfried Pflug, Martin Bachmann, Rupert Müller, E. Carmona, Viktoria Zekoll, Peter Reinartz
Software Mentions: 2
Published: over 4 years ago

10.3390/s21030789

Deep Convolutional and LSTM Networks on Multi-Channel Time Series Data for Gait Phase Recognition
Cited by: 16
Author(s): David Kreuzer, Michael Münz
Software Mentions: 2
Published: almost 4 years ago

10.3390/s21030971

Obstruction-Aware Signal-Loss-Tolerant Indoor Positioning Using Bluetooth Low Energy
Cited by: 4
Author(s): Aybars Kerem Taşkan, Hande Alemdar
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2105-11-9

PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data
Cited by: 19
Author(s): Benjamin Georgi, Ivan G. Costa, Alexander Schliep
Software Mentions: 2
Published: almost 15 years ago

10.3390/s21186181

Particle Classification through the Analysis of the Forward Scattered Signal in Optical Tweezers
Cited by: 5
Author(s): Inês Alves Carvalho, Nuno A. Silva, Carla C. Rosa, L. Coelho, P. A. S. Jorge
Software Mentions: 2
Published: about 3 years ago

10.1016/j.str.2009.07.009

Insights into How Nucleotide-Binding Domains Power ABC Transport
Cited by: 42
Author(s): Simon Newstead, Philip W. Fowler, Paul Bilton, E.P. Carpenter, Peter J. Sadler, Dominic J. Campopiano, Mark S. P. Sansom, So Iwata
Software Mentions: 2
Published: about 15 years ago

10.1107/S1600577520010838

X-ray Spectral Imaging Program: XSIP
Cited by: 0
Author(s): Peng Qi, Nazanin Samadi, Dean Chapman
Software Mentions: 2
Published: about 4 years ago

10.1186/s12859-019-2704-x

RhoTermPredict: an algorithm for predicting Rho-dependent transcription terminators based on Escherichia coli, Bacillus subtilis and Salmonella enterica databases
Cited by: 30
Author(s): Marco Di Salvo, Simone Puccio, Clelia Peano, Stéphan Lacour, Pietro Alifano
Software Mentions: 2
Published: over 5 years ago

10.1107/S1600577520014599

High-resolution macromolecular crystallography at the FemtoMAX beamline with time-over-threshold photon detection
Cited by: 0
Author(s): Mikael Jensen, Viktor Ahlberg Gagnér, Juan Sanchez, Anders Bengtsson, Johanna Ekström, Tinna Björg Úlfarsdóttir, María-José García-Bonete, Andrius Jurgilaitis, David Kroon, Van Tuong Pham, Stefano Checcia, Hélène Coudert-Alteirac, Siawosch Schewa, Manfred Rößle, Helena Rodilla, Jan Stake, Vitali Zhaunerchyk, Jörgen Larsson, Gergely Katona
Software Mentions: 2
Published: almost 4 years ago

10.1111/1556-4029.14578

Bruise dating using deep learning
Cited by: 7
Author(s): Jhonatan Tirado, David Mauricio
Software Mentions: 2
Published: about 4 years ago

10.3390/plants10020341

Rapid Quantification of Microalgae Growth with Hyperspectral Camera and Vegetation Indices
Cited by: 6
Author(s): Pauliina Salmi, Matti A. Eskelinen, Matti T. Leppänen, Ilkka Pölönen
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pbio.3000255

Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts
Cited by: 91
Author(s): Jacob L. Steenwyk, Dana A. Opulente, Jacek Kominek, Xing‐Xing Shen, Xiaofan Zhou, Abigail L. LaBella, Noah P. Bradley, Brandt F. Eichman, Neža Čadež, Diego Libkind, Jeremy DeVirgilio, Amanda Beth Hulfachor, Cletus P. Kurtzman, Chris Todd Hittinger, Antonis Rokas
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pcbi.1005329

Inferring the Chemotactic Strategy of P. putida and E. coli Using Modified Kramers-Moyal Coefficients
Cited by: 20
Author(s): Oliver Pohl, Marius Hintsche, Zahra Alirezaeizanjani, Maximilian Seyrich, Carsten Beta, Holger Stark
Software Mentions: 2
Published: almost 8 years ago

10.1098/rsta.2020.0246

Domain-driven models yield better predictions at lower cost than reservoir computers in Lorenz systems
Cited by: 8
Author(s): Ryan Pyle, Nikola Jovanovic, Devika Subramanian, Krishna V. Palem, Ankit Patel
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pcbi.1002204

Transmembrane Helix Dynamics of Bacterial Chemoreceptors Supports a Piston Model of Signalling
Cited by: 39
Author(s): Benjamin A. Hall, Judith P. Armitage, Mark S. P. Sansom
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pcbi.1002412

Degenerate T-cell Recognition of Peptides on MHC Molecules Creates Large Holes in the T-cell Repertoire
Cited by: 74
Author(s): Jorg J.A. Calis, Rob J. de Boer, Can Keşmir
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pcbi.1004389

A Diffusive Homeostatic Signal Maintains Neural Heterogeneity and Responsiveness in Cortical Networks
Cited by: 24
Author(s): Yann Sweeney, Jeanette Hellgren Kotaleski, Matthias H. Hennig
Software Mentions: 2
Published: over 9 years ago

10.3390/pharmaceutics12111071

Antimicrobial Peptide against Mycobacterium Tuberculosis That Activates Autophagy Is an Effective Treatment for Tuberculosis
Cited by: 15
Author(s): Erika A Peláez Coyotl, Jacqueline Barrios Palacios, Gabriel Muciño, Daniel Moreno-Blas, Miguel Costas, Teresa Montiel Montes, Christian Diener, Salvador Uribe‐Carvajal, Lourdes Massieu, Susana Castro-Obregón, Octavio Ramos‐Espinosa, Dulce Mata Espinosa, Jorge Barrios-Payán, Juan Carlos León Contreras, Gerardo Corzo, Rogelio Hernández-Pando, Gabriel del Río
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pcbi.1004838

Rapid Prediction of Bacterial Heterotrophic Fluxomics Using Machine Learning and Constraint Programming
Cited by: 51
Author(s): Stephen Gang Wu, Yu-Xuan Wang, Jiang Wu, Tolutola Oyetunde, Ruilian Yao, Xuehong Zhang, Kazuyuki Shimizu, Yinjie J. Tang, Forrest Sheng Bao
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pcbi.1004762

Estimation of Directed Effective Connectivity from fMRI Functional Connectivity Hints at Asymmetries of Cortical Connectome
Cited by: 136
Author(s): Matthieu Gilson, Rubén Moreno-Bote, Adrián Ponce‐Alvarez, Petra Ritter, Gustavo Deco
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pcbi.1005082

Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection
Cited by: 21
Author(s): Mark Read, Jacqueline Bailey, Jon Timmis, Tatyana Chtanova
Software Mentions: 2
Published: about 8 years ago

10.7717/peerj.5862

PromoterPredict: sequence-based modelling ofEscherichia coliσ70promoter strength yields logarithmic dependence between promoter strength and sequence
Cited by: 18
Author(s): Ramit Bharanikumar, Keshav Aditya R Premkumar, Ashok Palaniappan
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pcbi.1007417

Modeling of Wnt-mediated tissue patterning in vertebrate embryogenesis
Cited by: 19
Author(s): Jakob Rosenbauer, Chengting Zhang, Benjamin Mattes, Ines Reinartz, Kyle C. A. Wedgwood, Simone Schindler, Claude Sinner, Steffen Scholpp, Alexander Schug
Software Mentions: 2
Published: over 4 years ago

10.7717/peerj.1293

Effects ofin situclimate warming on monarch caterpillar (Danaus plexippus) development
Cited by: 6
Author(s): Nathan P. Lemoine, Jillian N Capdevielle, John D. Parker
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pntd.0009208

Co-circulation and misdiagnosis led to underestimation of the 2015–2017 Zika epidemic in the Americas
Cited by: 14
Author(s): Rachel J. Oidtman, Guido España, T. Alex Perkins
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0123925

Computational Ranking of Yerba Mate Small Molecules Based on Their Predicted Contribution to Antibacterial Activity against Methicillin-Resistant Staphylococcus aureus
Cited by: 9
Author(s): Caroline S. Rempe, Kellie P. Burris, Hyun-Joo Woo, Benjamin Goodrich, Denise Koessler Gosnell, Timothy J. Tschaplinski, C. Neal Stewart
Software Mentions: 2
Published: over 9 years ago

10.7717/peerj.7545

Expansion of sandhill cranes (Grus canadensis) in east Asia during the non-breeding period
Cited by: 2
Author(s): Linqiang Gao, Chunrong Mi, Yumin Guo
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0200280

HappyTools: A software for high-throughput HPLC data processing and quantitation
Cited by: 23
Author(s): Bas C. Jansen, Lise Hafkenscheid, Albert Bondt, Richard A. Gardner, Jenifer L. Hendel, Manfred Wuhrer, Daniel I. R. Spencer
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0226604

The protein architecture in Bacteria and Archaea identifies a set of promiscuous and ancient domains
Cited by: 1
Author(s): Rafael Hernandez-Guerrero, Edgardo Galán-Vásquez, Ernesto Pérez‐Rueda
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0205943

CLEESE: An open-source audio-transformation toolbox for data-driven experiments in speech and music cognition
Cited by: 15
Author(s): Juan José Burred, Emmanuel Ponsot, Louise Goupil, Marco Liuni, Jean‐Julien Aucouturier
Software Mentions: 2
Published: over 5 years ago

10.1093/database/bax023

ABCMdb reloaded: updates on mutations in ATP binding cassette proteins
Cited by: 10
Author(s): Hedvig Tordai, Kristóf Jakab, Gergely Gyimesi, Kinga András, Anna Brózik, Balázs Sarkadi, Tamás Hegedüs
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0091507

The Probabilistic Convolution Tree: Efficient Exact Bayesian Inference for Faster LC-MS/MS Protein Inference
Cited by: 18
Author(s): Oliver Serang
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2105-11-24

ETE: a python Environment for Tree Exploration
Cited by: 337
Author(s): Jaime Huerta-Cepas, Joaquı́n Dopazo, Toni Gabaldón
Software Mentions: 1
Published: almost 15 years ago

10.1038/srep39450

Simultaneous Analysis of Secondary Structure and Light Scattering from Circular Dichroism Titrations: Application to Vectofusin-1
Cited by: 11
Author(s): Louic S. Vermeer, Arnaud Marquette, Michel Schoup, David Fenard, Anne Galy, Burkhard Bechinger
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep23258

Substrate engagement of integrins α5β1 and αvβ3 is necessary, but not sufficient, for high directional persistence in migration on fibronectin
Cited by: 48
Author(s): Dimitris Missirlis, Tamás Haraszti, Catharina v. C. Scheele, Tina Wiegand, Carolina Díaz, Stefanie Neubauer, Florian Rechenmacher, Horst Kessler, Joachim P. Spatz
Software Mentions: 1
Published: over 8 years ago

10.1038/s41597-020-0502-y

X-ray nano-tomography of complete scales from the ultra-white beetles Lepidiota stigma and Cyphochilus
Cited by: 4
Author(s): Stephanie L. Burg, A. L. Washington, Julie Villanova, Andrew J. C. Dennison, Daragh McLoughlin, Oleksandr O. Mykhaylyk, Peter Vukusic, William R. Furnass, Richard Jones, Andrew J. Parnell, J. Patrick A. Fairclough
Software Mentions: 1
Published: over 4 years ago

10.1038/s41597-019-0121-7

Energy refinement and analysis of structures in the QM9 database via a highly accurate quantum chemical method
Cited by: 15
Author(s): Hyungjun Kim, Ji Young Park, Sunghwan Choi
Software Mentions: 1
Published: over 5 years ago

10.1098/rsos.202231

Methods for analysing lineage tracing datasets
Cited by: 1
Author(s): Vasiliki Kostiou, Huairen Zhang, Michael W. Hall, Philip H. Jones, Benjamin A. Hall
Software Mentions: 1
Published: over 3 years ago

10.1098/rsos.201293

Correlating in vitro performance with physico-chemical characteristics of nanofibrous scaffolds for skin tissue engineering using supervised machine learning algorithms
Cited by: 11
Author(s): Lakshmi Sujeeun, Nowsheen Goonoo, Honita Ramphul, Itisha Chummun, Fanny Gimié, Shakuntala Baichoo, Archana Bhaw‐Luximon
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pcbi.1005836

Maximum entropy methods for extracting the learned features of deep neural networks
Cited by: 37
Author(s): Alex I Finnegan, Jun S. Song
Software Mentions: 1
Published: about 7 years ago

10.1016/j.plabm.2021.e00222

Comparison of virus neutralization activity and results of 10 different anti-SARS-CoV-2 serological tests in COVID-19 recovered plasma donors
Cited by: 9
Author(s): Z Szabó, Tamás Szabó, Kornélia Bodó, Gábor Kemenesi, Fanni Földes, Katalin Kristóf, Eszter Barabás, Barna Vásárhelyi, Zoltán Prohászka, Eszter Fodor, Ferenc Jakab, Tímea Berki, Zsombor Lacza
Software Mentions: 1
Published: over 3 years ago

10.1186/s13321-021-00493-4

Incorporating structural similarity into a scoring function to enhance the prediction of binding affinities
Cited by: 1
Author(s): Beihong Ji, Xibing He, Yuzhao Zhang, Jingchen Zhai, Viet Hoang Man, Shuhan Liu, Junmei Wang
Software Mentions: 1
Published: almost 4 years ago

10.1039/c7sc02267k

Machine learning molecular dynamics for the simulation of infrared spectra
Cited by: 333
Author(s): Michael Gastegger, Jörg Behler, Philipp Marquetand
Software Mentions: 1
Published: almost 8 years ago

10.7150/jca.43521

Statistics and pitfalls of trend analysis in cancer research: a review focused on statistical packages
Cited by: 22
Author(s): Jie Xu, Yong Lin, Mu Yang, Lanjing Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1107/S1600576721005951

PyQCstrc.ico: a computing package for structural modelling of icosahedral quasicrystals
Cited by: 0
Author(s): Taro Yamada
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers13123092

B-Helper Neutrophils in Regional Lymph Nodes Correlate with Improved Prognosis in Patients with Head and Neck Cancer
Cited by: 5
Author(s): Ekaterina Pylaeva, Irem Oezel, Anthony Squire, Ilona Spyra, Charlotte Wallner, Magdalena Korek, Georg Korschunow, Maksim Domnich, Elena Siakaeva, Moritz Goetz, Ágnes Bánkfalvi, Stephan Lang, Benjamin Kansy, Jadwiga Jabłońska
Software Mentions: 1
Published: over 3 years ago

10.1534/g3.117.040220

TheCellMap.org: A Web-Accessible Database for Visualizing and Mining the Global Yeast Genetic Interaction Network
Cited by: 106
Author(s): Matej Ušaj, Yizhao Tan, Wen Wang, Benjamin VanderSluis, A. Zou, Chad L. Myers, Michael Costanzo, Brenda Andrews, Charles Boone
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1005068

The Flash-Lag Effect as a Motion-Based Predictive Shift
Cited by: 37
Author(s): Mina A. Khoei, Guillaume S. Masson, Laurent Perrinet
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpsyg.2013.00654

Extracting salient sublexical units from written texts: “Emophon,” a corpus-based approach to phonological iconicity
Cited by: 35
Author(s): Arash Aryani, Arthur Jacobs, Markus Conrad
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0160303

Chromosome Territory Modeller and Viewer
Cited by: 5
Author(s): Magdalena Tkacz, Kornel Chromiński, Dominika Idziak-Helmcke, Ewa Robaszkiewicz, Robert Hasterok
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2202-12-S1-P353

The impact of resource competition on neurite outgrowth
Cited by: 0
Author(s): Johannes Hjorth, Jurjen H. Broeke, Huib Mansvelder, Jaap van Pelt, Arjen van Ooyen
Software Mentions: 1
Published: over 13 years ago

10.3389/fphys.2020.622620

Long-Lasting Desynchronization of Plastic Neural Networks by Random Reset Stimulation
Cited by: 16
Author(s): Ali Khaledi-Nasab, Justus A. Kromer, Peter A. Tass
Software Mentions: 1
Published: almost 4 years ago

10.3389/fonc.2021.608191

Employment of Artificial Intelligence Based on Routine Laboratory Results for the Early Diagnosis of Multiple Myeloma
Cited by: 6
Author(s): Wei Yan, Hua Shi, Tao He, Jian Chen, Chen Wang, Aijun Liao, Wei Yang, Huihan Wang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0238411

City lockdown and nationwide intensive community screening are effective in controlling the COVID-19 epidemic: Analysis based on a modified SIR model
Cited by: 17
Author(s): Tailai Peng, Xinhao Liu, Hefeng Ni, Zhe Cui, Lei Du
Software Mentions: 1
Published: about 4 years ago

10.3389/fnins.2020.00882

Effects of Gamification in BCI Functional Rehabilitation
Cited by: 21
Author(s): Martí de Castro-Cros, Marc Sebastián-Romagosa, Javier Rodríguez-Serrano, Eloy Opisso, Manel Ochoa, Rupert Ortner, Christoph Guger, Dani Tost
Software Mentions: 1
Published: over 4 years ago

10.1093/bioinformatics/btab305

Haplotype-based membership inference from summary genomic data
Cited by: 4
Author(s): Diyue Bu, Xiaofeng Wang, Haixu Tang
Software Mentions: 1
Published: over 3 years ago

10.1093/bioinformatics/btab292

Expected 10-anonymity of HyperLogLog sketches for federated queries of clinical data repositories
Cited by: 0
Author(s): Ziye Tao, Griffin M Weber, Yun William Yu
Software Mentions: 1
Published: over 3 years ago

10.1093/bioinformatics/bty734

FastSpar: rapid and scalable correlation estimation for compositional data
Cited by: 159
Author(s): Stephen C. Watts, Scott C. Ritchie, Michael Inouye, Kathryn E. Holt
Software Mentions: 1
Published: about 6 years ago

10.3389/fmolb.2020.00067

Short Residence Times of DNA-Bound Transcription Factors Can Reduce Gene Expression Noise and Increase the Transmission of Information in a Gene Regulation System
Cited by: 15
Author(s): Eugenio Azpeitia, Andreas Wagner
Software Mentions: 1
Published: over 4 years ago

10.3389/fmolb.2016.00057

Computational Modeling of Lipid Metabolism in Yeast
Cited by: 9
Author(s): Vera Schützhold, Jens Hahn, Katja Tummler, Edda Klipp
Software Mentions: 1
Published: about 8 years ago

Projects: pypi: numpy

Papers Mentioning numpy 832