pypi: numpy | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1008003

Biological network growth in complex environments: A computational framework
Cited by: 6
Author(s): Torsten Johann Paul, Philip Kollmannsberger
Software Mentions: 4
Published: almost 4 years ago

Discovery of Ongoing Selective Sweeps within<i>Anopheles</i>Mosquito Populations Using Deep Learning
Cited by: 22
Author(s): Alexander T. Xue, Daniel R. Schrider, Andrew D. Kern, Alessandra della Torre, Andrew D. Kern, Beniamino Caputo, Bilali Kabula, Bradley J. White, Charles Godfray, Constant Edi, Craig S. Wilding, Dan Neafsey, Daniel R. Schrider, David J. Conway, David Weetman, Diégo Ayala, Dominic Kwiatkowski, Igor V. Sharakhov, Janet Midega, Jianchu Xu, João Pinto, John Essandoh, Johnson Matowo, Ken Vernick, Luc Djogbénou, Mamadou B. Coulibaly, Mara Lawniczak, Martin Donnelly, Matthew W. Hahn, Michaël C. Fontaine, Michelle M. Riehle, Nora J. Besansky, Omar E. Cornejo, Robert S. McCann, Sam O’Loughlin, Vincent Robert, Alexander T. Xue, Alistair Miles, Chris S. Clarkson, C. J. Battey, Cody Champion, Frédéric Labbé, Giordano Bottà, Jeffrey R. Adrion, Joel T. Nelson, Nick Harding, Thomas J. Wang, Scott T. Small, Seth Redmond, Tiago Antão
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-018-24318-x

EEG Analytics for Early Detection of Autism Spectrum Disorder: A data-driven approach
Cited by: 206
Author(s): William J. Bosl, Helen Tager‐Flusberg, Charles A. Nelson
Software Mentions: 4
Published: over 6 years ago

10.1186/s12859-021-03961-8

Tremor assessment using smartphone sensor data and fuzzy reasoning
Cited by: 5
Author(s): Caro Fuchs, Marco S. Nobile, Guillaume Zamora, Aurélie Degeneffe, Pieter L. Kubben, Uzay Kaymak
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-018-33900-2

Using volunteered observations to map human exposure to ticks
Cited by: 23
Author(s): Irene Garcia‐Martí, R. Zurita-Milla, Margriet Harms, Arno Swart
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-019-43587-8

Predicting the decision making chemicals used for bacterial growth
Cited by: 14
Author(s): Kazuha Ashino, Kenta Sugano, Toshiyuki Amagasa, Bei‐Wen Ying
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-020-66611-8

The development of a scoring and ranking strategy for a patient-tailored adverse drug reaction prediction in polypharmacy
Cited by: 5
Author(s): Andrei Valeanu, Cristian Damian, Cristina Daniela Marineci, Simona Negreş
Software Mentions: 3
Published: over 4 years ago

10.1007/s00894-015-2883-y

Improving the iterative Linear Interaction Energy approach using automated recognition of configurational transitions
Cited by: 12
Author(s): C. Ruben Vosmeer, Derk P. Kooi, Luigi Capoferri, Margreet M. Terpstra, Nico Vermeulen, Daan P. Geerke
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12859-018-2289-9

PRS-on-Spark (PRSoS): a novel, efficient and flexible approach for generating polygenic risk scores
Cited by: 16
Author(s): Lawrence M. Chen, Nelson Yao, Elika Garg, Yuecai Zhu, Thao T. T. Nguyen, Irina Pokhvisneva, Shantala A. Hari Dass, Eva Unternäehrer, Hélène Gaudreau, Marie Forest, Lisa M. McEwen, Julia L. MacIsaac, Michæl S. Kobor, Celia Greenwood, Patrícia Pelufo Silveira, Michael J. Meaney, Kieran J. O’Donnell
Software Mentions: 3
Published: over 6 years ago

10.1167/tvst.8.6.4

Automatic Detection of Diabetic Retinopathy in Retinal Fundus Photographs Based on Deep Learning Algorithm
Cited by: 82
Author(s): Feng Li, Zheng Liu, Hua Chen, Mawei Jiang, Xuedian Zhang, Zhizheng Wu
Software Mentions: 3
Published: about 5 years ago

10.1186/1471-2202-16-S1-P184

pypet: a python toolkit for simulations and numerical experiments
Cited by: 0
Author(s): Robert K. Meyer, Klaus Obermayer
Software Mentions: 3
Published: almost 9 years ago

10.1016/j.cub.2020.04.042

Two Distinct Types of Eye-Head Coupling in Freely Moving Mice
Cited by: 93
Author(s): Arne F. Meyer, John O’Keefe, Jasper Poort
Software Mentions: 3
Published: over 4 years ago

10.3389/fonc.2020.00757

Integration of Digital Pathologic and Transcriptomic Analyses Connects Tumor-Infiltrating Lymphocyte Spatial Density With Clinical Response to BRAF Inhibitors
Cited by: 9
Author(s): Artūras Žiemys, Michelle Kim, Alexander M. Menzies, James S. Wilmott, Georgina V. Long, Richard A. Scolyer, Larry Kwong, Ashley M. Holder, Genevieve M. Boland
Software Mentions: 3
Published: over 4 years ago

10.1016/j.csbj.2018.10.008

Quantitative comparison of ABC membrane protein type I exporter structures in a standardized way
Cited by: 4
Author(s): Georgina Csizmadia, Bianka Farkas, Zoltán Spagina, Hedvig Tordai, Tamás Hegedüs
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-021-95702-3

Geographic source estimation using airborne plant environmental DNA in dust
Cited by: 10
Author(s): Chelsea Lennartz, Joel Kurucar, Stephen Coppola, Janice Crager, Johanna Bobrow, Laura Bortolin, James C. Comolli
Software Mentions: 3
Published: over 3 years ago

10.3389/fphys.2021.644349

Deep Shape Features for Predicting Future Intracranial Aneurysm Growth
Cited by: 5
Author(s): Žiga Bizjak, Franjo Pernuš, Žiga Špiclin
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-50228-7

Transcriptomic analysis reveals new hippocampal gene networks induced by prolactin
Cited by: 17
Author(s): Erika Alejandra Cabrera-Reyes, América Vanoye-Carlo, Mauricio Rodríguez-Dorantes, Edgar Ricardo Vázquez-Martínez, Nadia Alejandra Rivero-Segura, Omar Collazo-Navarrete, Marco Cerbón
Software Mentions: 3
Published: about 5 years ago

10.1002/jmv.27033

SARS‐CoV‐2 rapid antigen test: Fast‐safe or dangerous? An analysis in the emergency department of an university hospital
Cited by: 20
Author(s): Carola Holzner, Dirk Pabst, Olympia E. Anastasiou, Ulf Dittmer, Randi Manegold, Joachim Riße, David Fistera, Clemens Kill, Maximilian Falk
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pcbi.1006343

PyPhi: A toolbox for integrated information theory
Cited by: 57
Author(s): William G. P. Mayner, William Marshall, Larissa Albantakis, Graham Findlay, Robert Marchman, Giulio Tononi
Software Mentions: 3
Published: over 6 years ago

10.1523/ENEURO.0305-18.2020

Circuit and Cellular Mechanisms Facilitate the Transformation from Dense to Sparse Coding in the Insect Olfactory System
Cited by: 16
Author(s): Rinaldo Betkiewicz, Benjamin Lindner, Martin Paul Nawrot
Software Mentions: 3
Published: over 4 years ago

10.3390/s21113867

Climate-Aware and IoT-Enabled Selection of the Most Suitable Stone Fruit Tree Variety
Cited by: 6
Author(s): Juan Antonio López-Morales, Juan Antonio Martı́nez, Manuel Caro, Manuel Erena, Antonio F. Skarmeta
Software Mentions: 3
Published: over 3 years ago

10.1093/molbev/msab195

Molecular Evolutionary Dynamics of Energy Limited Microorganisms
Cited by: 3
Author(s): William R. Shoemaker, Evgeniya Polezhaeva, Kenzie B. Givens, Jay T. Lennon
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-46549-2

Using weather radar to monitor the number, timing and directions of flying-foxes emerging from their roosts
Cited by: 12
Author(s): Jessica Meade, Rodney van der Ree, Phillip M. Stepanian, David A. Westcott, Justin A. Welbergen
Software Mentions: 3
Published: over 5 years ago

10.1098/rstb.2013.0067

Attention in natural scenes: contrast affects rapid visual processing and fixations alike
Cited by: 27
Author(s): Bernard Marius ’t Hart, Hannah Claudia Elfriede Fanny Schmidt, Ingo Klein-Harmeyer, Wolfgang Einhäuser
Software Mentions: 3
Published: about 11 years ago

10.3389/fpsyg.2013.00455

Fixations on objects in natural scenes: dissociating importance from salience
Cited by: 28
Author(s): Bernard Marius ’t Hart, Hannah Claudia Elfriede Fanny Schmidt, Christine Roth, Wolfgang Einhäuser
Software Mentions: 3
Published: almost 12 years ago

10.3390/s21103552

Sensing Optimum in the Raw: Leveraging the Raw-Data Imaging Capabilities of Raspberry Pi for Diagnostics Applications
Cited by: 2
Author(s): Alessandro Tonelli, Veronica Mangia, Alessandro Candiani, Francesco Pasquali, Tiziana Jessica Mangiaracina, Alessandro Grazioli, Michele Sozzi, Davide Gorni, Simona Bussolati, Annamaria Cucinotta, Giuseppina Basini, Stefano Selleri
Software Mentions: 3
Published: over 3 years ago

10.3389/fpsyg.2018.00612

ExGUtils: A Python Package for Statistical Analysis With the ex-Gaussian Probability Density
Cited by: 22
Author(s): Carmen Moret-Tatay, D. Gamermann, Esperanza Navarro‐Pardo, Pedro Fernández de Córdoba Castellá
Software Mentions: 3
Published: over 6 years ago

10.3389/fpsyg.2014.01390

Jointly structuring triadic spaces of meaning and action: book sharing from 3 months on
Cited by: 62
Author(s): Nicole Rossmanith, Alan Costall, Andreas Reichelt, Beatriz López, Vasudevi Reddy
Software Mentions: 3
Published: almost 10 years ago

10.3389/fpsyg.2018.01815

Creative Argumentation: When and Why People Commit the Metaphoric Fallacy
Cited by: 11
Author(s): Francesca Ervas, Antonio Ledda, Amitash Ojha, G. A. Pierro, Bipin Indurkhya
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1007287

DeepHiC: A generative adversarial network for enhancing Hi-C data resolution
Cited by: 48
Author(s): Huasheng Hong, Shuai Jiang, Hao Li, Guangwei Du, Yu Sun, Tao Huan, Qimin Cheng, Chenghui Zhao, Ruijiang Li, Wanying Li, Xiaoyao Yin, Yangchen Huang, Li Cheng, Hebing Chen, Xiaochen Bo
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-021-90102-z

Glycoproteomic analysis of the changes in protein N-glycosylation during neuronal differentiation in human-induced pluripotent stem cells and derived neuronal cells
Cited by: 6
Author(s): Kazumasa Kimura, Takumi Koizumi, Takaya Urasawa, Yuki Ohta, Daisuke Takakura, Nana Kawasaki
Software Mentions: 3
Published: over 3 years ago

10.1155/2020/7156165

DBT Masses Automatic Segmentation Using U-Net Neural Networks
Cited by: 11
Author(s): Xiaobo Lai, W. Yang, Ruipeng Li
Software Mentions: 3
Published: almost 5 years ago

10.7717/peerj.6652

IOCBIO Sparks detection and analysis software
Cited by: 9
Author(s): Martin Laasmaa, Niina Karro, Rikke Birkedal, Marko Vendelin
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1003720

LipidWrapper: An Algorithm for Generating Large-Scale Membrane Models of Arbitrary Geometry
Cited by: 53
Author(s): Jacob D. Durrant, Rommie E. Amaro
Software Mentions: 3
Published: over 10 years ago

10.3390/cancers13061315

Longitudinal Changes of Quality of Life and Hearing Following Radiosurgery for Vestibular Schwannoma
Cited by: 4
Author(s): Paul Windisch, Jörg‐Christian Tonn, Christoph Fürweger, Felix Ehret, Berndt Wowra, Markus Kufeld, Christian Schichor, Alexander Muacevic
Software Mentions: 3
Published: over 3 years ago

10.1152/jn.00201.2021

Within-cycle instantaneous frequency profiles report oscillatory waveform dynamics
Cited by: 21
Author(s): Andrew Quinn, Vítor Lopes‐dos‐Santos, Norden E. Huang, Wei Kuang Liang, Juan C-H., Jia-Rong Yeh, Anna C. Nobre, David Dupret, Mark W. Woolrich
Software Mentions: 3
Published: about 3 years ago

10.3390/genes9060300

Automated Recognition of RNA Structure Motifs by Their SHAPE Data Signatures
Cited by: 10
Author(s): Pierce Radecki, Mirko Ledda, Sharon Aviran
Software Mentions: 3
Published: over 6 years ago

10.3390/genes10080613

Meta-Analysis of Cancer Triploidy: Rearrangements of Genome Complements in Male Human Tumors Are Characterized by XXY Karyotypes
Cited by: 12
Author(s): Ninel M. Vainshelbaum, Pawel Zayakin, Regīna Kleina, Alessandro Giuliani, Jekaterina Ērenpreisa
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms21218004

MRI Radiomic Features to Predict IDH1 Mutation Status in Gliomas: A Machine Learning Approach using Gradient Tree Boosting
Cited by: 21
Author(s): Yu Sakai, Chen Yang, Shingo Kihira, Nadejda M. Tsankova, Fahad Khan, Adı́lia Hormigo, Albert Lai, Timothy F. Cloughesy, Kambiz Nael
Software Mentions: 3
Published: about 4 years ago

10.1186/s40478-018-0574-5

RNA binding proteins co-localize with small tau inclusions in tauopathy
Cited by: 99
Author(s): Brandon F. Maziuk, Daniel J. Apicco, Anna Lourdes Cruz, Lulu Jiang, Peter E.A. Ash, Edroaldo Lummertz da Rocha, Cheng Zhang, Wen H. Yu, John D. Leszyk, Jose F. Abisambra, Li Hu, Benjamin Wolozin
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-017-1774-x

Repliscan: a tool for classifying replication timing regions
Cited by: 15
Author(s): Gregory J Zynda, Jawon Song, Lorenzo Concia, Emily E. Wear, Linda Hanley‐Bowdoin, William F. Thompson, Matthew Vaughn
Software Mentions: 3
Published: over 7 years ago

10.1039/d0sc06057g

Real-time imaging of nanoscale electrochemical Ni etching under thermal conditions
Cited by: 9
Author(s): Shu Fen Tan, Kate Reidy, Julian Klein, Ainsley Pinkowitz, Baoming Wang, Frances M. Ross
Software Mentions: 3
Published: almost 4 years ago

10.1186/s12859-019-2718-4

SV-Pop: population-based structural variant analysis and visualization
Cited by: 6
Author(s): Matt Ravenhall, Susana Campino, Taane G. Clark
Software Mentions: 3
Published: over 5 years ago

10.1186/s41235-020-00254-1

Reference frames in spatial communication for navigation and sports: an empirical study in ultimate frisbee players
Cited by: 1
Author(s): Steven M. Weisberg, Anjan Chatterjee
Software Mentions: 3
Published: about 4 years ago

10.1186/s13059-015-0767-1

HiCPlotter integrates genomic data with interaction matrices
Cited by: 149
Author(s): Kadir C. Akdemir, Lynda Chin
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0226547

Analysis of 13,312 benthic invertebrate samples from German streams reveals minor deviations in ecological status class between abundance and presence/absence data
Cited by: 27
Author(s): Dominik Buchner, Arne J. Beermann, Alex Laini, Peter Rolauffs, Simon Vitecek, Daniel Hering, Florian Leese
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12859-019-2892-4

MHCSeqNet: a deep neural network model for universal MHC binding prediction
Cited by: 48
Author(s): Poomarin Phloyphisut, Natapol Pornputtapong, Sira Sriswasdi, Ekapol Chuangsuwanich
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.12559

Neural coding in barrel cortex during whisker-guided locomotion
Cited by: 92
Author(s): Nicholas Sofroniew, Yurii A. Vlasov, Samuel Andrew Hires, Jeremy Freeman, Karel Svoboda
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pcbi.1005775

Estimating time of HIV-1 infection from next-generation sequence diversity
Cited by: 44
Author(s): Vadim Puller, Richard A. Neher, Jan Albert
Software Mentions: 3
Published: about 7 years ago

10.3390/s20185030

Lightweight Driver Behavior Identification Model with Sparse Learning on In-Vehicle CAN-BUS Sensor Data
Cited by: 21
Author(s): Saeed Ullah, Deok‐Hwan Kim
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-020-3513-y

ICEKAT: an interactive online tool for calculating initial rates from continuous enzyme kinetic traces
Cited by: 25
Author(s): Michael D. Olp, Kelsey S. Kalous, Brian C. Smith
Software Mentions: 3
Published: over 4 years ago

10.3390/ijerph16020250

Deep Learning Algorithms with Demographic Information Help to Detect Tuberculosis in Chest Radiographs in Annual Workers’ Health Examination Data
Cited by: 65
Author(s): Seok‐Jae Heo, Yangwook Kim, Sehyun Yun, Sung Shil Lim, Jihyun Kim, Chung Mo Nam, Sohee Park, Inkyung Jung, Jin Ha Yoon
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12864-019-6436-0

CNCC: an analysis tool to determine genome-wide DNA break end structure at single-nucleotide resolution
Cited by: 7
Author(s): Karol Szlachta, Heather M Raimer, Laurey Comeau, Yuh‐Hwa Wang
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-64581-5

Formation of an electrical coupling between differentiating cardiomyocytes
Cited by: 10
Author(s): Mihail Slotvitsky, Valeriya Tsvelaya, A.D. Podgurskaya, Konstantin Agladze
Software Mentions: 3
Published: over 4 years ago

10.3390/s20102937

A Safe Charging Algorithm Based on Multiple Mobile Chargers
Cited by: 5
Author(s): Wei Wang, Haoran Jing, Junhua Liao, Feng Yin, Yuan Ping, Liangyin Chen
Software Mentions: 3
Published: over 4 years ago

10.1186/s13073-019-0665-3

Identifying chemogenetic interactions from CRISPR screens with drugZ
Cited by: 106
Author(s): Medina Colic, Gang Wang, Michal Zimmermann, Keith Mascall, Megan McLaughlin, Lori Bertolet, Walter F. Lenoir, Jason Moffat, Stéphane Angers, Daniel Durocher, Traver Hart
Software Mentions: 3
Published: over 5 years ago

10.1186/s13073-020-00809-3

Improved analysis of CRISPR fitness screens and reduced off-target effects with the BAGEL2 gene essentiality classifier
Cited by: 49
Author(s): Eiru Kim, Traver Hart
Software Mentions: 3
Published: almost 4 years ago

10.3390/s20102809

Data-Driven Cervical Cancer Prediction Model with Outlier Detection and Over-Sampling Methods
Cited by: 152
Author(s): Muhammad Fazal Ijaz, Muhammad Attique, Youngdoo Son
Software Mentions: 3
Published: over 4 years ago

10.18632/oncotarget.24859

MYCN acts as a direct co-regulator of p53 in MYCN amplified neuroblastoma
Cited by: 25
Author(s): Saurabh Agarwal, Giorgio Milazzo, Kimal Rajapakshe, R Bernardi, Zaowen Chen, Eveline Barberi, Jan Koster, Giovanni Perini, Cristian Coarfa, Jason M. Shohet
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0171212

Morphogene adsorption as a Turing instability regulator: Theoretical analysis and possible applications in multicellular embryonic systems
Cited by: 12
Author(s): Alexey M. Nesterenko, Maxim Kuznetsov, Daria D. Korotkova, Andrey G. Zaraisky
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0243966

Correlation between hospitalized patients’ demographics, symptoms, comorbidities, and COVID-19 pandemic in Bahia, Brazil
Cited by: 14
Author(s): Márcio C. F. Macedo, Isabelle Matos Pinheiro, Caio J. L. Carvalho, H Fraga, Isaac P. C. Araujo, Simone S. Montes, Otávio A. C. Araujo, Leonardo Santos de Brito Alves, Hugo Saba, Márcio Luís Valença Araújo, Ivonete T. L. Queiroz, Romilson Lopes Sampaio, Márcia São Pedro Leal Souza, Ana Claudia F. N. da Silva, Antonio Carlos Santana de Souza
Software Mentions: 3
Published: almost 4 years ago

10.3390/healthcare8040402

Applying the Minimal Detectable Change of a Static and Dynamic Balance Test Using a Portable Stabilometric Platform to Individually Assess Patients with Balance Disorders
Cited by: 7
Author(s): Juan de la Torre, Javier Marín, Marco Polo, José J. Marín
Software Mentions: 3
Published: about 4 years ago

10.1186/s12859-020-03673-5

Biomedical document triage using a hierarchical attention-based capsule network
Cited by: 7
Author(s): Jian Wang, Mengying Li, Qishuai Diao, Hongfei Lin, Zhihao Yang, YiJia Zhang
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pcbi.1006184

Interplay of multiple pathways and activity-dependent rules in STDP
Cited by: 8
Author(s): Gaëtan Vignoud, Laurent Venance, Jonathan Touboul
Software Mentions: 3
Published: over 6 years ago

10.1093/molbev/msw083

A Recent Whole-Genome Duplication Divides Populations of a Globally Distributed Microsporidian
Cited by: 13
Author(s): Tom A. Williams, Sirintra Nakjang, Scott E. Campbell, Mark Freeman, Matthías Eydal, Karen Moore, Robert P. Hirt, T. Martin Embley, Bryony A. P. Williams
Software Mentions: 3
Published: over 8 years ago

10.1038/srep11988

Exploring Host-Microbiome Interactions using an in Silico Model of Biomimetic Robots and Engineered Living Cells
Cited by: 17
Author(s): Keith C. Heyde, Warren C. Ruder
Software Mentions: 3
Published: over 9 years ago

10.3390/insects12010004

Tracing the Invasion and Expansion Characteristics of the Flatid Planthopper, Metcalfa pruinosa (Hemiptera: Flatidae), in Korea Using Mitochondrial DNA Sequences
Cited by: 4
Author(s): Keon Hee Lee, Jun Seong Jeong, Jeong Sun Park, Min Jee Kim, Na Ra Jeong, Su Yeon Jeong, Gwan Seok Lee, Wonhoon Lee, Iksoo Kim
Software Mentions: 3
Published: almost 4 years ago

10.7717/peerj-cs.679

Approximate spectral clustering using both reference vectors and topology of the network generated by growing neural gas
Cited by: 1
Author(s): Kazuhisa Fujita
Software Mentions: 3
Published: over 3 years ago

10.1186/s12902-016-0140-8

Gastric bypass surgery reveals independency of obesity and diabetes melitus type 2
Cited by: 8
Author(s): Mogens Fenger, Dorte L. Hansen, Dorte Worm, Lisbeth E. Hvolris, Viggo B. Kristiansen, Elin Rebecka Carlsson, Sten Madsbad
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0096814

Advancing Bag-of-Visual-Words Representations for Lesion Classification in Retinal Images
Cited by: 69
Author(s): Ramon Pires, Herbert F. Jelinek, Jacques Wainer, Eduardo Valle, Anderson Rocha
Software Mentions: 3
Published: over 10 years ago

10.3389/fbioe.2020.00249

Agent-Based Models Predict Emergent Behavior of Heterogeneous Cell Populations in Dynamic Microenvironments
Cited by: 20
Author(s): Jessica Yu, Neda Bagheri
Software Mentions: 3
Published: over 4 years ago

10.1002/aps3.11380

Digitally deconstructing leaves in 3D using X‐ray microcomputed tomography and machine learning
Cited by: 20
Author(s): Guillaume Théroux‐Rancourt, Matthew R. Jenkins, Craig R. Brodersen, Andrew J. McElrone, Elisabeth J. Forrestel, J. Mason Earles
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pgen.1007794

Genetic architecture and selective sweeps after polygenic adaptation to distant trait optima
Cited by: 44
Author(s): Markus G Stetter, Kevin R. Thornton, Jeffrey Ross‐Ibarra
Software Mentions: 3
Published: about 6 years ago

10.3389/fcell.2016.00041

Customized Steady-State Constraints for Parameter Estimation in Non-Linear Ordinary Differential Equation Models
Cited by: 17
Author(s): Marcus Rosenblatt, Jens Timmer, Daniel Kaschek
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0182016

An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins
Cited by: 20
Author(s): Marcin Michalik, Marcella Orwick‐Rydmark, Michael Habeck, Vikram Alva, Thomas C. Arnold, Dirk Linke
Software Mentions: 3
Published: over 7 years ago

10.3389/fncel.2020.607843

Imaging Subthreshold Voltage Oscillation With Cellular Resolution in the Inferior Olive in vitro
Cited by: 3
Author(s): Kevin Dorgans, Bernd Kühn, Marylka Yoe Uusisaari
Software Mentions: 3
Published: almost 4 years ago

10.1002/fsn3.1484

Rapid identification of chrysanthemum teas by computer vision and deep learning
Cited by: 16
Author(s): Chunlin Li, Weiying Lu, Boyan Gao, Hanae Kimura, Yanfang Li, Jing Wang
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1007424

Bayesian inference of metabolic kinetics from genome-scale multiomics data
Cited by: 30
Author(s): Peter C. St. John, Jonathan Strutz, Linda J. Broadbelt, Keith E.J. Tyo, Yannick J. Bomble
Software Mentions: 3
Published: about 5 years ago

10.1107/S1600576718009500

Serial electron crystallography for structure determination and phase analysis of nanocrystalline materials
Cited by: 45
Author(s): Stef Smeets, Xiaodong Zou, Wei Wan
Software Mentions: 3
Published: over 6 years ago

10.1107/S1600576718015145

High-throughput continuous rotation electron diffraction data acquisition<i>via</i>software automation
Cited by: 110
Author(s): Magdalena Ola Cichocka, Jonas Ångström, Bin Wang, Xiaodong Zou, Stef Smeets
Software Mentions: 3
Published: about 6 years ago

10.3389/fncom.2017.00068

A Low-Rank Method for Characterizing High-Level Neural Computations
Cited by: 6
Author(s): Joel Thomas Kaardal, Frédéric E. Theunissen, Tatyana O. Sharpee
Software Mentions: 3
Published: over 7 years ago

10.1021/acssynbio.0c00318

Synthetic Lateral Inhibition in Periodic Pattern Forming Microbial Colonies
Cited by: 11
Author(s): Salva Duran-Nebreda, Jordi Pla, Blai Vidiella, Jordi Piñero, Núria Conde-Pueyo, Ricard V. Solé
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0249624

Graph diffusion distance: Properties and efficient computation
Cited by: 4
Author(s): Cory Braker Scott, Eric Mjolsness
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0226481

Connectivity differences between Gulf War Illness (GWI) phenotypes during a test of attention
Cited by: 4
Author(s): Tomas Clarke, Jessie D. Jamieson, Patrick S. Malone, Rakib U. Rayhan, Stuart D. Washington, John W. VanMeter, James N. Baraniuk
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1002867

Passive Dendrites Enable Single Neurons to Compute Linearly Non-separable Functions
Cited by: 75
Author(s): Romain D. Cazé, Mark D. Humphries, Boris Gutkin
Software Mentions: 3
Published: over 11 years ago

10.12688/f1000research.8251.2

pyGeno: A Python package for precision medicine and proteogenomics
Cited by: 6
Author(s): Tariq Daouda, Claude Perreault, Sébastien Lemieux
Software Mentions: 3
Published: over 8 years ago

10.7717/peerj.8783

Meta-SourceTracker: application of Bayesian source tracking to shotgun metagenomics
Cited by: 36
Author(s): Jordan McGhee, Nick Rawson, Barbara Bailey, Antonio Fernández-Guerra, Laura Sisk-Hackworth, Scott T. Kelley
Software Mentions: 3
Published: over 4 years ago

10.2196/25160

User Perspectives of Diet-Tracking Apps: Reviews Content Analysis and Topic Modeling
Cited by: 14
Author(s): Mila Zečević, Dejan Mijatović, Mateja Kos Koklič, Vesna Žabkar, Petar Gidaković
Software Mentions: 3
Published: over 3 years ago

10.1007/s11307-020-01508-6

Deep Learning for Virtual Histological Staining of Bright-Field Microscopic Images of Unlabeled Carotid Artery Tissue
Cited by: 29
Author(s): Dan Li, Hui Hui, Yingqian Zhang, Wei Tong, Feng Tian, Xin Yang, Jie Liu, Yundai Chen, Hui Hui
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.50469

Temporal chunking as a mechanism for unsupervised learning of task-sets
Cited by: 14
Author(s): Flora Bouchacourt, Stefano Palminteri, Etienne Koechlin, Srdjan Ostojic
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0206193

Loose social organisation of AB strain zebrafish groups in a two-patch environment
Cited by: 6
Author(s): Axel Séguret, Bertrand Collignon, Léo Cazenille, Yohann Chemtob, José Halloy
Software Mentions: 3
Published: almost 6 years ago

10.1111/pbi.13097

Immunogenicity of plant‐produced porcine circovirus‐like particles in mice
Cited by: 11
Author(s): Cornelius J. Gunter, Guy L. Regnard, Edward P. Rybicki, Inga I. Hitzeroth
Software Mentions: 3
Published: over 5 years ago

10.3389/fgene.2021.617935

Screening for Combination Cancer Therapies With Dynamic Fuzzy Modeling and Multi-Objective Optimization
Cited by: 5
Author(s): Simone Spolaor, Martijn Scheve, Murat Fırat, Paolo Cazzaniga, Daniela Besozzi, Marco S. Nobile
Software Mentions: 3
Published: over 3 years ago

10.3390/membranes5040702

Lipid Diffusion in Supported Lipid Bilayers: A Comparison between Line-Scanning Fluorescence Correlation Spectroscopy and Single-Particle Tracking
Cited by: 26
Author(s): Markus Rose, Nehad Hirmiz, Jose M. Moran‐Mirabal, Cécile Fradin
Software Mentions: 3
Published: about 9 years ago

10.1098/rstb.2018.0277

Context matters: using reinforcement learning to develop human-readable, state-dependent outbreak response policies
Cited by: 17
Author(s): William J. M. Probert, Sandya Lakkur, Christopher Fonnesbeck, Katriona Shea, Michael C. Runge, Michael J. Tildesley, Matthew J. Ferrari
Software Mentions: 3
Published: over 5 years ago

10.7554/eLife.56053

Population coupling predicts the plasticity of stimulus responses in cortical circuits
Cited by: 24
Author(s): Yann Sweeney, Claudia Clopath
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pgen.1007823

Nucleosome positions establish an extended mutation signature in melanoma
Cited by: 30
Author(s): Alexander Brown, Peng Mao, Michael J. Smerdon, John J. Wyrick, Steven A. Roberts
Software Mentions: 3
Published: almost 6 years ago

10.7554/eLife.61312

Escape from neutralizing antibodies by SARS-CoV-2 spike protein variants
Cited by: 1,163
Author(s): Yiska Weisblum, Fabian Schmidt, Fengwen Zhang, Justin DaSilva, Daniel Poston, Julio C. C. Lorenzi, Frauke Muecksch, Magdalena Rutkowska, Hans-Heinrich Hoffmann, Eleftherios Michailidis, Christian Gaebler, Marianna Agudelo, Alice Cho, Zijun Wang, Anna Gazumyan, Melissa Cipolla, Larry L. Luchsinger, Christopher D. Hillyer, Marina Caskey, Davide F. Robbiani, Charles M. Rice, Michel C. Nussenzweig, Théodora Hatziioannou, Paul D. Bieniasz
Software Mentions: 3
Published: about 4 years ago

10.1107/S2059798321003740

Are the St John's wort Hyp-1 superstructures different?
Cited by: 0
Author(s): Jeffrey J. Lovelace, Gloria E. O. Borgstahl
Software Mentions: 3
Published: over 3 years ago

10.7554/eLife.50568

Antagonistic regulation by insulin-like peptide and activin ensures the elaboration of appropriate dendritic field sizes of amacrine neurons
Cited by: 17
Author(s): Jiangnan Luo, Chun-Yuan Ting, Yan Li, Philip G. McQueen, Te‐Yu Lin, Chao‐Ping Hsu, Chi-Hon Lee
Software Mentions: 3
Published: over 4 years ago

Projects: pypi: numpy

Papers Mentioning numpy 832