Projects: pypi: ngCGH
https://packages.ecosyste.ms/registries/pypi.org/packages/ngCGH
Pseudo-cgh of next-generation sequencing data
15 versions
Latest release: almost 3 years ago
12 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
Sean Davis (user)
- Pediatric oncologist - Cancer researcher - Data scientist - Community organizer Academic
- Pediatric oncologist - Cancer researcher - Data scientist - Community organizer Academic
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Academic repository owner
Repository owned by academic institution -
+10
Science terms in README
5 scientific terms found in README -
+20
DOI references
2 DOI references found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (100)
Papers Mentioning ngCGH 7
10.1371/journal.pcbi.1004873
CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA SequencingCited by: 1,141
Author(s): Eric Talevich, A. Hunter Shain, Thomas Botton, Boris C. Bastian
Software Mentions: 9
Published: about 10 years ago
10.18632/oncotarget.15932
Gene-based comparative analysis of tools for estimating copy number alterations using whole-exome sequencing dataCited by: 18
Author(s): Hyung-Yong Kim, Jin‐Woo Choi, Jeong-Yeon Lee, Gu Kong
Software Mentions: 5
Published: over 9 years ago
10.18632/oncotarget.13616
Genomic and transcriptomic characterization of skull base chordomaCited by: 14
Author(s): K. Jason, In Hee Lee, Sang Duk Hong, Doo Sik Kong, Do Hyun Nam
Software Mentions: 2
Published: over 9 years ago
10.1002/cam4.3370
Ethnic delineation of primary glioblastoma genomeCited by: 2
Author(s): Harim Koo, Seung Won Choi, Hee Jin Cho, In Hee Lee, Doo Sik Kong, Ho Jun Seol, Jung Il Lee, Jung Won Choi, K. Jason, Do Hyun Nam
Software Mentions: 1
Published: almost 6 years ago
10.18632/oncotarget.11922
Mutational burdens and evolutionary ages of thyroid follicular adenoma are comparable to those of follicular carcinomaCited by: 66
Author(s): Seung‐Hyun Jung, Min Sung Kim, Chan Kwon Jung, Hyun-Chun Park, Sang Hyun Kim, Jieying Liu, Ja Seong Bae, Sung Hak Lee, Tae Min Kim, Sug Hyung Lee, Yeun‐Jun Chung
Software Mentions: 1
Published: almost 10 years ago
10.18632/oncotarget.23975
Quantitative radiomic profiling of glioblastoma represents transcriptomic expressionCited by: 15
Author(s): Doo Sik Kong, Junhyung Kim, Gyu Ha Ryu, Hye Jin You, Ji Youn Sung, Yong Han, Hye mi Shin, In Hee Lee, Sung Tae Kim, Chul‐Kee Park, Seung Hong Choi, Jeong Won Choi, Ho Jun Seol, Jung Il Lee, Do Hyun Nam
Software Mentions: 1
Published: over 8 years ago