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Papers: 10.1371/journal.pcbi.1004873

https://doi.org/10.1371/journal.pcbi.1004873

CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing

Cited by: 1,141
Author(s): Eric Talevich, A. Hunter Shain, Thomas Botton, Boris C. Bastian
Published: over 9 years ago

Software Mentions 9

bioconductor: CODEX
A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
Papers that mentioned: 72
Very Likely Science (93)
bioconductor: CopywriteR
Copy number information from targeted sequencing using off-target reads
Papers that mentioned: 28
Very Likely Science (100)
bioconductor: exomeCopy
Copy number variant detection from exome sequencing read depth
Papers that mentioned: 7
Very Likely Science (100)
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
Very Likely Science (90)
cran: ExomeDepth
Calls Copy Number Variants from Targeted Sequence Data
Papers that mentioned: 112
Very Likely Science (75)
pypi: Biology
Biological Analysis
Papers that mentioned: 311
Very Likely Science (90)
pypi: CNVkit
Copy number variation toolkit for high-throughput sequencing.
Papers that mentioned: 161
Very Likely Science (65)
pypi: ngCGH
Pseudo-cgh of next-generation sequencing data
Papers that mentioned: 7
Very Likely Science (100)
pypi: pysam
Package for reading, manipulating, and writing genomic data
Papers that mentioned: 130
Very Likely Science (100)