Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: exomeCopy
https://packages.ecosyste.ms/registries/bioconductor.org/packages/exomeCopy
Copy number variant detection from exome sequencing read depth
1 version
Latest release: about 1 year ago
3 dependent packages
49,171 downloads total
Papers Mentioning exomeCopy 7
10.1371/journal.pcbi.1004873
CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA SequencingCited by: 1,141
Author(s): Eric Talevich, A. Hunter Shain, Thomas Botton, Boris C. Bastian
Software Mentions: 9
Published: over 8 years ago
10.1186/s13062-016-0110-0
Altools: a user friendly NGS data analyserCited by: 5
Author(s): Salvatore Camiolo, Gaurav Sablok, Andrea Porceddu
Software Mentions: 7
Published: over 8 years ago
10.1186/s12859-019-2889-z
Comparison of kNN and k-means optimization methods of reference set selection for improved CNV callers performanceCited by: 12
Author(s): Wiktor Kuśmirek, Agnieszka Szmurło, Marek Wiewiórka, Robert Nowak, Tomasz Gambin
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-021-93878-2
Benchmarking germline CNV calling tools from exome sequencing dataCited by: 27
Author(s): Veronika Gordeeva, Е. И. Шарова, Konstantin Babalyan, Rinat Sultanov, Vadim M. Govorun, Georgij Arapidi
Software Mentions: 4
Published: over 3 years ago
10.1186/s12859-020-3421-1
Comparative study of whole exome sequencing-based copy number variation detection toolsCited by: 32
Author(s): Lanling Zhao, Lina Han, Xiguo Yuan, Kun Gao, Junbo Duan
Software Mentions: 3
Published: over 4 years ago
10.1093/bioinformatics/bts526
A robust model for read count data in exome sequencing experiments and implications for copy number variant callingCited by: 504
Author(s): Vincent Plagnol, James Curtis, Michael P. Epstein, Kin Y. Mok, Emma Stebbings, Sofia Grigoriadou, Nicholas W. Wood, Sophie Hambleton, Siobhan O. Burns, Adrian J. Thrasher, Dinakantha Kumararatne, Rainer Döffinger, Sergey Nejentsev
Software Mentions: 2
Published: about 12 years ago
10.1155/2013/915636
Comparative Study of Exome Copy Number Variation Estimation Tools Using Array Comparative Genomic Hybridization as ControlCited by: 35
Author(s): Yan Guo, Quanhu Sheng, David C. Samuels, Brian D. Lehmann, Joshua A. Bauer, Jennifer A. Pietenpol, Yu Shyr
Software Mentions: 2
Published: almost 12 years ago