Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: exomeCopy

https://packages.ecosyste.ms/registries/bioconductor.org/packages/exomeCopy

Copy number variant detection from exome sequencing read depth
1 version
Latest release: about 1 year ago
3 dependent packages
49,171 downloads total

Papers Mentioning exomeCopy 7

10.1371/journal.pcbi.1004873

CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing
Cited by: 1,141
Author(s): Eric Talevich, A. Hunter Shain, Thomas Botton, Boris C. Bastian
Software Mentions: 9
Published: over 8 years ago

10.1186/s13062-016-0110-0

Altools: a user friendly NGS data analyser
Cited by: 5
Author(s): Salvatore Camiolo, Gaurav Sablok, Andrea Porceddu
Software Mentions: 7
Published: almost 9 years ago

10.1186/s12859-019-2889-z

Comparison of kNN and k-means optimization methods of reference set selection for improved CNV callers performance
Cited by: 12
Author(s): Wiktor Kuśmirek, Agnieszka Szmurło, Marek Wiewiórka, Robert Nowak, Tomasz Gambin
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-021-93878-2

Benchmarking germline CNV calling tools from exome sequencing data
Cited by: 27
Author(s): Veronika Gordeeva, Е. И. Шарова, Konstantin Babalyan, Rinat Sultanov, Vadim M. Govorun, Georgij Arapidi
Software Mentions: 4
Published: over 3 years ago

10.1186/s12859-020-3421-1

Comparative study of whole exome sequencing-based copy number variation detection tools
Cited by: 32
Author(s): Lanling Zhao, Lina Han, Xiguo Yuan, Kun Gao, Junbo Duan
Software Mentions: 3
Published: almost 5 years ago

10.1093/bioinformatics/bts526

A robust model for read count data in exome sequencing experiments and implications for copy number variant calling
Cited by: 504
Author(s): Vincent Plagnol, James Curtis, Michael P. Epstein, Kin Y. Mok, Emma Stebbings, Sofia Grigoriadou, Nicholas W. Wood, Sophie Hambleton, Siobhan O. Burns, Adrian J. Thrasher, Dinakantha Kumararatne, Rainer Döffinger, Sergey Nejentsev
Software Mentions: 2
Published: over 12 years ago

10.1155/2013/915636

Comparative Study of Exome Copy Number Variation Estimation Tools Using Array Comparative Genomic Hybridization as Control
Cited by: 35
Author(s): Yan Guo, Quanhu Sheng, David C. Samuels, Brian D. Lehmann, Joshua A. Bauer, Jennifer A. Pietenpol, Yu Shyr
Software Mentions: 2
Published: almost 12 years ago