Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: mmseqs
https://packages.ecosyste.ms/registries/pypi.org/packages/mmseqs
MMSEQS Python bindings
2 versions
Latest release: almost 4 years ago
109 downloads last month
Papers Mentioning mmseqs 6
10.7717/peerj.12198
Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasetsCited by: 16
Author(s): Nicholas D. Youngblut, Ruth E. Ley
Software Mentions: 5
Published: about 3 years ago
10.1186/s12864-020-07132-6
Progress in quickly finding orthologs as reciprocal best hits: comparing blast, last, diamond and MMseqs2Cited by: 35
Author(s): Julie E. Hernández-Salmerón, Gabriel Moreno‐Hagelsieb
Software Mentions: 4
Published: about 4 years ago
10.1186/s12859-020-03585-4
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence dataCited by: 74
Author(s): Silas Kieser, Joseph Brown, Evgeny M. Zdobnov, Mirko Trajkovski, Lee Ann McCue
Software Mentions: 3
Published: over 4 years ago
10.1126/sciadv.aaz6137
Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in <i>Streptococcus pneumoniae</i>Cited by: 14
Author(s): Sonja Lehtinen, Claire Chewapreecha, John A. Lees, William P. Hanage, Marc Lipsitch, Nicholas J. Croucher, Stephen D. Bentley, Paul Turner, Christophe Fraser, Rafal Mostowy
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-021-91827-7
DNCON2_Inter: predicting interchain contacts for homodimeric and homomultimeric protein complexes using multiple sequence alignments of monomers and deep learningCited by: 15
Author(s): Farhan Quadir, Raj Roy, Randal Halfmann, Jianlin Cheng
Software Mentions: 1
Published: over 3 years ago
10.1038/s41396-020-0628-0
Diversity and evolution of surface polysaccharide synthesis loci in EnterobacterialesCited by: 33
Author(s): Kathryn E. Holt, Florent Lassalle, Ryan R. Wick, Rafal Mostowy
Software Mentions: 1
Published: over 4 years ago