Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7717/peerj.12198

https://doi.org/10.7717/peerj.12198

Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets

Cited by: 16
Author(s): Nicholas D. Youngblut, Ruth E. Ley
Published: about 3 years ago

Software Mentions 5

cran: kmer
Fast K-Mer Counting and Clustering for Biological Sequence Analysis
Papers that mentioned: 240
pypi: build.py
A build system
Papers that mentioned: 3
pypi: mmseqs
MMSEQS Python bindings
Papers that mentioned: 6
pypi: snakemake
Workflow management system to create reproducible and scalable data analyses
Papers that mentioned: 45
pypi: vsearch
The Head First Python Search Tools
Papers that mentioned: 284