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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: pypi: lefse

https://packages.ecosyste.ms/registries/pypi.org/packages/lefse

LEfSe determines the features (organisms, clades, operational taxonomic units, genes, or functions) most likely to explain differences between classes by coupling standard tests for statistical significance with additional tests encoding biological consistency and effect relevance.
1 version
Latest release: almost 4 years ago
74 downloads last month

Enhanced Analysis
Educational Contributors: [email protected]
Repository Activity:
Repository Owner: Segata Lab (organization)
The computational metagenomics lab at the Dep. CIBIO, University of Trento Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +20 Educational commit emails
    1 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +6 Science terms in README
    3 scientific terms found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
Very Likely Science (100)

Papers Mentioning lefse 4

10.1186/s12859-021-04193-6
Comparison study of differential abundance testing methods using two large Parkinson disease gut microbiome datasets derived from 16S amplicon sequencing
Cited by: 32
Author(s): Zachary D Wallen
Software Mentions: 14
Published: about 4 years ago
10.12688/f1000research.18866.2
MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic data
Cited by: 12
Author(s): Mike W.C. Thang, Xin-Yi Chua, Gareth Price, D. Gorse, Matthew A. Field
Software Mentions: 7
Published: almost 6 years ago
10.3389/fmicb.2021.639913
Comparison of Microbial Communities in Colorado Potato Beetles (Leptinotarsa decemlineata Say) Collected From Different Sources in China
Cited by: 6
Author(s): Yanxue Yu, Yuhan Wang, Hongwei Li, Xiubo Yu, Wangpeng Shi, Junfeng Zhai
Software Mentions: 4
Published: over 4 years ago
10.3389/fmicb.2017.02699
Preliminary Comparison of Oral and Intestinal Human Microbiota in Patients with Colorectal Cancer: A Pilot Study
Cited by: 78
Author(s): Edda Russo, Giovanni Bacci, Carolina Chiellini, Camilla Fagorzi, Elena Niccolai, Antonio Taddei, Francesca Ricci, Maria Novella Ringressi, Rossella Borrelli, Filippo Melli, Manouela Miloeva, Paolo Bechi, Alessio Mengoni, Renato Fani, Amedeo Amedei
Software Mentions: 3
Published: over 7 years ago