Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: lefse
https://packages.ecosyste.ms/registries/pypi.org/packages/lefse
LEfSe determines the features (organisms, clades, operational taxonomic units, genes, or functions) most likely to explain differences between classes by coupling standard tests for statistical significance with additional tests encoding biological consistency and effect relevance.
1 version
Latest release: over 3 years ago
74 downloads last month
Papers Mentioning lefse 4
10.1186/s12859-021-04193-6
Comparison study of differential abundance testing methods using two large Parkinson disease gut microbiome datasets derived from 16S amplicon sequencingCited by: 32
Author(s): Zachary D Wallen
Software Mentions: 14
Published: over 3 years ago
10.12688/f1000research.18866.2
MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic dataCited by: 12
Author(s): Mike W.C. Thang, Xin-Yi Chua, Gareth Price, D. Gorse, Matthew A. Field
Software Mentions: 7
Published: over 5 years ago
10.3389/fmicb.2021.639913
Comparison of Microbial Communities in Colorado Potato Beetles (Leptinotarsa decemlineata Say) Collected From Different Sources in ChinaCited by: 6
Author(s): Yanxue Yu, Yuhan Wang, Hongwei Li, Xiubo Yu, Wangpeng Shi, Junfeng Zhai
Software Mentions: 4
Published: almost 4 years ago
10.3389/fmicb.2017.02699
Preliminary Comparison of Oral and Intestinal Human Microbiota in Patients with Colorectal Cancer: A Pilot StudyCited by: 78
Author(s): Edda Russo, Giovanni Bacci, Carolina Chiellini, Camilla Fagorzi, Elena Niccolai, Antonio Taddei, Francesca Ricci, Maria Novella Ringressi, Rossella Borrelli, Filippo Melli, Manouela Miloeva, Paolo Bechi, Alessio Mengoni, Renato Fani, Amedeo Amedei
Software Mentions: 3
Published: about 7 years ago