Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12859-021-04193-6
https://doi.org/10.1186/s12859-021-04193-6
Cited by: 32
Author(s): Zachary D Wallen
Published: almost 3 years ago
Software Mentions 14
bioconductor: ALDEx2
Analysis Of Differential Abundance Taking Sample and Scale Variation Into AccountPapers that mentioned: 136
bioconductor: baySeq
Empirical Bayesian analysis of patterns of differential expression in count dataPapers that mentioned: 139
bioconductor: DECIPHER
Tools for curating, analyzing, and manipulating biological sequencesPapers that mentioned: 415
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: metagenomeSeq
Statistical analysis for sparse high-throughput sequencingPapers that mentioned: 169
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census dataPapers that mentioned: 1,702
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing readsPapers that mentioned: 1,562
pypi: lefse
LEfSe determines the features (organisms, clades, operational taxonomic units, genes, or functions) most likely to explain differences between classes by coupling standard tests for statistical significance with additional tests encoding biological consistency and effect relevance.Papers that mentioned: 4