pypi: igraph | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0232681

Network analysis of regional livestock trade in West Africa
Cited by: 24
Author(s): Valerie C. Valerio, Olivier Walther, M. Eilittä, Brahima Cissé, Rachata Muneepeerakul, Gregory A. Kiker
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0222016

Impact of care provider network characteristics on patient outcomes: Usage of social network analysis and a multi-scale community detection
Cited by: 13
Author(s): Mina Ostovari, Denny Yu
Software Mentions: 4
Published: about 5 years ago

10.1534/g3.120.401545

Genome-Wide Screen for Context-Dependent Tumor Suppressors Identified Using in Vivo Models for Neoplasia in Drosophila
Cited by: 3
Author(s): Casper Groth, Pooja Vaid, Aditi S. Khatpe, Nelchi Prashali, Avantika Ahiya, Diāna Andrējeva, Madhumita Chakladar, Sanket Nagarkar, Rachel Paul, Devaki A. Kelkar, Teresa Eichenlaub, Héctor Herranz, T.S. Sridhar, Stephen M. Cohen, L. S. Shashidhara
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2020.00158

Distinct Assembly Mechanisms Underlie Similar Biogeographic Patterns of Rare and Abundant Bacterioplankton in Cascade Reservoirs of a Large River
Cited by: 31
Author(s): Carlos Juan, Peifang Wang, Chao Wang, Xun Wang, Lingzhan Miao, Sheng Liu, Qiusheng Yuan, Shenghao Sun
Software Mentions: 4
Published: almost 5 years ago

10.3390/jcm8101663

Revealing Associations between Diagnosis Patterns and Acupoint Prescriptions Using Medical Data Extracted from Case Reports
Cited by: 13
Author(s): Cheol Han Kim, Da Eun Yoon, Ye-Seul Lee, Won Jai Jung, Joo Hee Kim, Younbyoung Chae
Software Mentions: 4
Published: about 5 years ago

10.3758/s13428-018-1186-5

spreadr: An R package to simulate spreading activation in a network
Cited by: 24
Author(s): Cynthia S. Q. Siew
Software Mentions: 4
Published: almost 6 years ago

10.3390/ani10010144

Characterization of Anaerobic Rumen Fungal Community Composition in Yak, Tibetan Sheep and Small Tail Han Sheep Grazing on the Qinghai-Tibetan Plateau
Cited by: 16
Author(s): Wei Guo, Weiwei Wang, Sisi Bi, Ruijun Long, Farman Ullah, Muhammad Shafiq, Mi Zhou, Ying Zhang
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0160791

Natural Cubic Spline Regression Modeling Followed by Dynamic Network Reconstruction for the Identification of Radiation-Sensitivity Gene Association Networks from Time-Course Transcriptome Data
Cited by: 31
Author(s): Agata Michna, Herbert Braselmann, Martin Selmansberger, Anne Dietz, Julia Heß, Maria Gomolka, Sabine Hornhardt, Nils Blüthgen, Horst Zitzelsberger, Kristian Unger
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0026605

Leaders Are More Attractive: Birds with Bigger Yellow Breast Patches Are Followed by More Group-Mates in Foraging Groups
Cited by: 20
Author(s): Zoltán Tóth, Matteo Griggio
Software Mentions: 4
Published: about 13 years ago

10.1371/journal.pone.0107629

Tracking Difference in Gene Expression in a Time-Course Experiment Using Gene Set Enrichment Analysis
Cited by: 4
Author(s): Pui Shan Wong, Michihiro Tanaka, Yoshihiko Sunaga, Masayoshi Tanaka, Tadatsugu Taniguchi, Tomoko Yoshino, Tsuyoshi Tanaka, Wataru Fujibuchi, Sachiyo Aburatani
Software Mentions: 4
Published: about 10 years ago

10.3389/fvets.2021.611132

Livestock Network Analysis for Rhodesiense Human African Trypanosomiasis Control in Uganda
Cited by: 1
Author(s): Walter Okello, C. Amongi, Dennis Muhanguzi, Ewan T. MacLeod, Charles Waiswa, Alexandra Shaw, Susan C. Welburn
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-018-27172-z

Heterogeneity of interactions of microbial communities in regions of Taihu Lake with different nutrient loadings: A network analysis
Cited by: 32
Author(s): Xinyi Cao, Dayong Zhao, Huimin Xu, Rui Huang, Jin Zeng, Zhigang Yu
Software Mentions: 4
Published: over 6 years ago

10.1016/j.jmb.2014.04.026

SuSPect: Enhanced Prediction of Single Amino Acid Variant (SAV) Phenotype Using Network Features
Cited by: 181
Author(s): Christopher M. Yates, Ioannis Filippis, Lawrence A. Kelley, Michael J.E. Sternberg
Software Mentions: 4
Published: over 10 years ago

10.3389/frma.2021.742311

Exploring Topics in Bibliometric Research Through Citation Networks and Semantic Analysis
Cited by: 37
Author(s): Cristian Mejía, Mengjia Wu, Yi Zhang, Yuya Kajikawa
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pone.0115092

Mapping Interdisciplinary Fields: Efficiencies, Gaps and Redundancies in HIV/AIDS Research
Cited by: 23
Author(s): Jeffrey M. Adams, Ryan Light
Software Mentions: 4
Published: almost 10 years ago

10.3389/fpubh.2021.729559

Efficacy of COVID-19 Treatments: A Bayesian Network Meta-Analysis of Randomized Controlled Trials
Cited by: 25
Author(s): Chenyang Zhang, Huaqing Jin, Yi Feng Wen, Guosheng Yin
Software Mentions: 4
Published: about 3 years ago

10.1038/s41598-018-24373-4

Social thermoregulation as a potential mechanism linking sociality and fitness: Barbary macaques with more social partners form larger huddles
Cited by: 39
Author(s): Liz A. D. Campbell, Patrick J. Tkaczynski, Julia Lehmann, Mohamed Mouna, Bonaventura Majolo
Software Mentions: 4
Published: over 6 years ago

10.1186/2043-9113-1-34

Profiling the human response to physical exercise: a computational strategy for the identification and kinetic analysis of metabolic biomarkers
Cited by: 36
Author(s): Michael Netzer, Klaus M. Weinberger, Michael Handler, Michael Seger, Xuekun Fang, Karl G. Kugler, Armin Graber, Christian Baumgartner
Software Mentions: 4
Published: almost 14 years ago

10.1371/journal.pone.0255323

Gut microbiota alterations in response to sleep length among African-origin adults
Cited by: 13
Author(s): Na Fei, Candice Choo-Kang, Sirimon Reutrakul, Stephanie J. Crowley, Dale E. Rae, Kweku Bedu-Addo, Jacob Plange‐Rhule, Terrence Forrester, Estelle V. Lambert, Pascal Bovet, Walter Riesen, Wolfgang Korte, Amy Luke, Brian T. Layden, Jack A. Gilbert, Lara R. Dugas
Software Mentions: 4
Published: about 3 years ago

10.3389/fpsyg.2018.02252

Orthographic Networks in the Developing Mental Lexicon. Insights From Graph Theory and Implications for the Study of Language Processing
Cited by: 5
Author(s): Jutta Trautwein, Sascha Schroeder
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0084642

Predicting the Vulnerability of Great Apes to Disease: The Role of Superspreaders and Their Potential Vaccination
Cited by: 19
Author(s): Charlotte Carne, Stuart Semple, Helen C. Morrogh‐Bernard, Klaus Zuberbühler, Julia Lehmann
Software Mentions: 4
Published: almost 11 years ago

10.3389/fmicb.2017.02559

Patterns and Drivers of Vertical Distribution of the Ciliate Community from the Surface to the Abyssopelagic Zone in the Western Pacific Ocean
Cited by: 32
Author(s): Feng Zhao, Sabine Filker, Kuidong Xu, Pingping Huang, Shan Zheng
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12889-018-5588-1

Development and testing of a novel survey to assess Stakeholder-driven Community Diffusion of childhood obesity prevention efforts
Cited by: 26
Author(s): Ariella R. Korn, Erin Hennessy, Ross A. Hammond, Steven Allender, Matthew W. Gillman, Matt Kasman, Jaimie McGlashan, Lynne Millar, Brynle Owen, Mark C. Pachucki, Boyd Swinburn, Alison Tovar, Christina D. Economos
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0140577

How Many Parasites Species a Frog Might Have? Determinants of Parasite Diversity in South American Anurans
Cited by: 47
Author(s): Karla Magalhães Campião, Augusto Cesar de Aquino Ribas, Drausio Honório Morais, Reinaldo José da Silva, Luiz Eduardo Roland Tavares
Software Mentions: 4
Published: about 9 years ago

10.3389/fpsyg.2020.00742

All Happy Emotions Are Alike but Every Unhappy Emotion Is Unhappy in Its Own Way: A Network Perspective to Academic Emotions.
Cited by: 3
Author(s): Markus Mattsson, Telle Hailikari, Anna Parpala
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-017-15811-w

Disentangling the co-structure of multilayer interaction networks: degree distribution and module composition in two-layer bipartite networks
Cited by: 14
Author(s): Julia Astegiano, Florian Altermatt, François Massol
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0102188

Large-Scale Structure of a Network of Co-Occurring MeSH Terms: Statistical Analysis of Macroscopic Properties
Cited by: 21
Author(s): Andrej Kastrin, Thomas C. Rindflesch, Dimitar Hristovski
Software Mentions: 4
Published: over 10 years ago

10.1186/1471-2105-13-294

Effects of protein interaction data integration, representation and reliability on the use of network properties for drug target prediction
Cited by: 25
Author(s): Antonio M. Mora, Ian Donaldson
Software Mentions: 4
Published: about 12 years ago

10.1016/j.gpb.2016.04.004

Comparative Gene Expression Analysis of Mouse and Human Cardiac Maturation
Cited by: 38
Author(s): Hideki Uosaki, Y-h. Taguchi
Software Mentions: 4
Published: over 8 years ago

10.7554/eLife.65582

Neural correlates of ingroup bias for prosociality in rats
Cited by: 25
Author(s): Inbal Ben-Ami Bartal, Jocelyn Breton, Huanjie Sheng, Kimberly L.P. Long, Stella Chen, Aline Halliday, Justin W. Kenney, Anne L. Wheeler, Paul W. Frankland, Carrie Shilyansky, Karl Deisseroth, Dacher Keltner, Daniela Kaufer
Software Mentions: 4
Published: over 3 years ago

10.3389/fpsyg.2019.02448

The Differential Role of Central and Bridge Symptoms in Deactivating Psychopathological Networks
Cited by: 37
Author(s): Daniel Castro, Filipa Ferreira, Inês de Castro, Ana Rita Rodrigues, Marta Correia, Josefina Ribeiro, Tiago Ferreira
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2020.00574

Decoding Gene Networks Modules That Explain the Recovery of Hymenoglossum cruentum Cav. After Extreme Desiccation
Cited by: 6
Author(s): Enrique Ostria‐Gallardo, Giovanni Larama, Graciela Berríos, Ana Fallard, Ana Gutiérrez-Moraga, Ingo Ensminger, Patrício Manque, Luisa Bascuñán‐Godoy, León A. Bravo
Software Mentions: 4
Published: over 4 years ago

10.1016/j.gpb.2018.08.002

PlaD: A Transcriptomics Database for Plant Defense Responses to Pathogens, Providing New Insights into Plant Immune System
Cited by: 19
Author(s): Huan Qi, Zhenhong Jiang, Kang Zhang, Shiping Yang, Fei He, Ziding Zhang
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0208720

Modular structure in fish co-occurrence networks: A comparison across spatial scales and grouping methodologies
Cited by: 9
Author(s): Daniel J. McGarvey, Joseph A. Veech
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-017-09566-7

Comparison of musculoskeletal networks of the primate forelimb
Cited by: 13
Author(s): Júlia Molnár, Borja Esteve‐Altava, Campbell Rolian, Rui Diogo
Software Mentions: 4
Published: about 7 years ago

10.1186/s12917-018-1406-3

Dynamic network measures reveal the impact of cattle markets and alpine summering on the risk of epidemic outbreaks in the Swiss cattle population
Cited by: 21
Author(s): Beatriz Vidondo, Bernhard Voelkl
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0231837

Effects of user behaviors on accumulation of social capital in an online social network
Cited by: 10
Author(s): Yuri Germanovich Rykov, Olessia Koltsova, Yadviga Sinyavskaya
Software Mentions: 4
Published: over 4 years ago

10.3389/fpls.2019.01593

Cultivated Olive Diversification at Local and Regional Scales: Evidence From the Genetic Characterization of French Genetic Resources
Cited by: 17
Author(s): Bouchaïb Khadari, Ahmed El Bakkali, Laila Essalouh, Christine Tollon, Christian Pinatel, Guillaume Besnard
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0214868

Reconstruction and inference of the Lactococcus lactis MG1363 gene co-expression network
Cited by: 5
Author(s): Jimmy Omony, Anne de Jong, Jan Kok, Sacha A. F. T. van Hijum
Software Mentions: 4
Published: over 5 years ago

10.1186/s40425-018-0464-1

A novel anti-HER2 anthracycline-based antibody-drug conjugate induces adaptive anti-tumor immunity and potentiates PD-1 blockade in breast cancer
Cited by: 63
Author(s): Lucia D’Amico, Ulrike Menzel, Michael Prummer, Philipp Müller, Mélanie Buchi, Abhishek S. Kashyap, Ulrike Haessler, Alexander Yermanos, Rémy Gébleux, Manfred Briendl, Tamara Hell, Fabian I. Wolter, Roger R. Beerli, Iva Truxová, Radek Špíšek, Tatjana Vlajnic, Ulf Grawunder, Sai T. Reddy, Alfred Zippelius
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-017-04300-9

Altered miRNA expression network in locus coeruleus of depressed suicide subjects
Cited by: 59
Author(s): Bhaskar Roy, Qingzhong Wang, M. Palkóvits, Gábor Faludi, Yogesh K. Dwivedi
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-017-02903-w

Evidence for mutual assessment in a wild primate
Cited by: 16
Author(s): Marcela E. Benítez, David J. Pappano, Jacinta C. Beehner, Thore J. Bergman
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0170293

Recent Themes in Social Networking Service Research
Cited by: 20
Author(s): John S. Liu, Mei Hsiu–Ching Ho, Louis Y. Y. Lu
Software Mentions: 4
Published: almost 8 years ago

10.1093/infdis/jiz318

High-Throughput Sequencing-Based Investigation of Viruses in Human Cancers by Multienrichment Approach
Cited by: 13
Author(s): Sarah Mollerup, Maria E. Asplund, Jens Friis-Nielsen, Kristín Rós Kjartansdóttir, Helena Fridholm, Thomas Arn Hansen, José Alejandro Romero Herrera, Christopher J. Barnes, Randi Holm Jensen, Stine Raith Richter, Ida Broman Nielsen, Carlotta Pietroni, David E. Alquezar‐Planas, Alba Rey‐Iglesia, Pernille V. S. Olsen, Ewa Rajpert De Meyts, Line Groth‐Pedersen, Christian von Buchwald, David Hebbelstrup Jensen, Robert Gniadecki, Estrid Høgdall, Jill Levin Langhoff, Imre Pete, Ildikó Vereczkey, Zsolt Baranyai, Karen Dybkær, Hans Erik Johnsen, Torben Steiniche, Peter Hokland, Jacob Rosenberg, Ulrik Baandrup, Thomas Sicheritz-Pontén, Eske Willerslev, Søren Brunak, Ole Lund, Tobias Mourier, Lasse Vinner, Jose M. G. Izarzugaza, Lars Peter Nielsen, Anders J. Hansen
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2017.01725

Combined Effects of Irrigation Regime, Genotype, and Harvest Stage Determine Tomato Fruit Quality and Aptitude for Processing into Puree
Cited by: 20
Author(s): Alexandre Arbex de Castro Vilas Boas, David L. Page, Robert Giovinazzo, Nadia Bertin, Anne-Laure Fanciullino
Software Mentions: 4
Published: about 7 years ago

10.1016/j.artmed.2020.101930

Using topological data analysis and pseudo time series to infer temporal phenotypes from electronic health records
Cited by: 14
Author(s): Arianna Dagliati, Nophar Geifman, Niels Peek, John H. Holmes, Lucia Sacchi, Riccardo Bellazzi, Seyed Erfan Sajjadi, Allan Tucker
Software Mentions: 4
Published: over 4 years ago

10.3389/fphys.2021.678507

Sex Differences in the Physiological Network of Healthy Young Subjects
Cited by: 6
Author(s): Antonio Barajas-Martínez, Elizabeth Ibarra-Coronado, Rubén Fossión, J. C. Toledo-Roy, Vania Jocelyn Martínez-Garcés, Juan Antonio López-Rivera, Geraldine Tello-Santoyo, Rusland D Lavin, José Luis Díaz Gómez, Christopher R. Stephens, Carlos A. Aguilar-Salinas, Bruno Estañol, Nimbe Torres, Armando R. Tovar, Osbaldo Reséndis-Antonio, Marcia Hiriart, A. Frank, Ana Leonor Rivera
Software Mentions: 4
Published: over 3 years ago

10.3389/fphys.2020.587994

Metabolic Physiological Networks: The Impact of Age
Cited by: 15
Author(s): Antonio Barajas-Martínez, Jonathan F. Easton, Ana Leonor Rivera, Ricardo Jesús Martínez‐Tapia, Lizbeth de la Cruz, Adriana Robles-Cabrera, Christopher R. Stephens
Software Mentions: 4
Published: about 4 years ago

10.3389/fphys.2020.00862

Strategies to Enhance Logic Modeling-Based Cell Line-Specific Drug Synergy Prediction
Cited by: 6
Author(s): Barbara Niederdorfer, Vasundra Touré, Miguél Vázquez, Liv Thommesen, Martin Kuiper, Astrid Lægreid, Åsmund Flobak
Software Mentions: 4
Published: over 4 years ago

10.1074/jbc.RA119.011010

Synergistic mutations in soluble guanylyl cyclase (sGC) reveal a key role for interfacial regions in the sGC activation mechanism
Cited by: 8
Author(s): Kenneth C Childers, Xin‐Qiu Yao, Sam Giannakoulias, Joshua Amason, Donald Hamelberg, Elsa D. Garcin
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0197883

The regulatory ancestral network of surgical meshes
Cited by: 21
Author(s): Nasim Zargar, Andrew Carr
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0245409

Social survival: Humpback whales (Megaptera novaeangliae) use social structure to partition ecological niches within proposed critical habitat
Cited by: 3
Author(s): Janie Wray, Eric M. Keen, Éadin O’Mahony
Software Mentions: 4
Published: over 3 years ago

10.3389/fphar.2019.00109

A Comparative Study of Cluster Detection Algorithms in Protein–Protein Interaction for Drug Target Discovery and Drug Repurposing
Cited by: 23
Author(s): Ma Jun, Jenny Wang, Laleh Soltan Ghoraie, Xin Men, Benjamin Haibe‐Kains, Peng Dai
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0235690

Heatmap centrality: A new measure to identify super-spreader nodes in scale-free networks
Cited by: 10
Author(s): Christina Durón
Software Mentions: 4
Published: over 4 years ago

10.1186/s12920-017-0250-9

Basal-like breast cancer: molecular profiles, clinical features and survival outcomes
Cited by: 64
Author(s): Heloisa Helena Milioli, Inna Tishchenko, Carlos Riveros, Regina Berretta, Pablo Moscato
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0019350

Deep Sequencing of Organ- and Stage-Specific microRNAs in the Evolutionarily Basal Insect Blattella germanica (L.) (Dictyoptera, Blattellidae)
Cited by: 82
Author(s): Alexandre S. Cristino, Erica D. Tanaka, Mercedes Rubio, María‐Dolors Piulachs, Xavier Bellés
Software Mentions: 4
Published: over 13 years ago

10.3390/insects10080252

Vertical and Horizontal Trophic Networks in the Aroid-Infesting Insect Community of Los Tuxtlas Biosphere Reserve, Mexico
Cited by: 2
Author(s): Guadalupe Amancio, Armando Aguirre‐Jaimes, Vicente Hernández-Ortíz, Roger Guevara, Maurício Quesada
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0256956

Exploring the topology and dynamic growth properties of co-invention networks and technology fields
Cited by: 2
Author(s): Pablo E. Pinto, Guillermo Honores, Andrés Vallone
Software Mentions: 4
Published: about 3 years ago

10.1038/sdata.2016.56

Species interactions in occurrence data for a community of tick-transmitted pathogens
Cited by: 37
Author(s): Agustı́n Estrada-Peña, José de la Fuente
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2020.618287

Niche Differentiation of Comammox Nitrospira in the Mudflat and Reclaimed Agricultural Soils Along the North Branch of Yangtze River Estuary
Cited by: 22
Author(s): Xinxin Wang, Lu Lu, Xue Zhou, Xiufeng Tang, Lu Kuang, Junhui Chen, Jun Shan, Huijie Lü, Hua Qin, Jonathan M. Adams, Baozhan Wang
Software Mentions: 4
Published: almost 4 years ago

10.3389/fgene.2018.00412

Network, Transcriptomic and Genomic Features Differentiate Genes Relevant for Drug Response
Cited by: 14
Author(s): Janet Piñero, Abel González-Pérez, Emre Güney, Joaquim Aguirre‐Plans, Ferrán Sanz, Baldo Oliva, Laura I. Furlong
Software Mentions: 4
Published: about 6 years ago

10.1186/1752-0509-5-1

Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach
Cited by: 118
Author(s): Atsushi Fukushima, Miyako Kusano, Henning Redestig, Masanori Arita, Kazuki Saito
Software Mentions: 4
Published: almost 14 years ago

10.1186/s12918-016-0313-0

XMRF: an R package to fit Markov Networks to high-throughput genetics data
Cited by: 18
Author(s): Ying-Wooi Wan, Genevera I. Allen, Yulia Baker, Eunho Yang, Pradeep Ravikumar, Matthew L. Anderson, Zhandong Liu
Software Mentions: 4
Published: over 8 years ago

10.3390/cancers13040851

Network Analysis Identifies Drug Targets and Small Molecules to Modulate Apoptosis Resistant Cancers
Cited by: 6
Author(s): Samreen Fathima, Swati Sinha, Sainitin Donakonda
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12859-019-2659-y

IMMAN: an R/Bioconductor package for Interolog protein network reconstruction, mapping and mining analysis
Cited by: 2
Author(s): Mohieddin Jafari, Payman Nickchi, Soheil Jahangiri, Abdollah Safari, Mehdi Mirzaie, Mohieddin Jafari
Software Mentions: 4
Published: almost 6 years ago

10.3389/fneur.2020.00773

Computer Modeling of Clot Retrieval—Circle of Willis
Cited by: 6
Author(s): Thanh G. Phan, Henry Ma, Mayank Goyal, James Hilton, Matthew D. Sinnott, Velandai Srikanth, Richard Beare
Software Mentions: 4
Published: over 4 years ago

10.3389/fcell.2019.00082

Transcriptome Analysis of Small Molecule–Mediated Astrocyte-to-Neuron Reprogramming
Cited by: 30
Author(s): Xin Ning, Jiu Chao Yin, Gong Chen
Software Mentions: 4
Published: over 5 years ago

10.1016/j.celrep.2020.107928

Diversification of DNA-Binding Specificity by Permissive and Specificity-Switching Mutations in the ParB/Noc Protein Family
Cited by: 17
Author(s): Adam S. B. Jalal, Ngat T. Tran, Clare E. M. Stevenson, Elliot W. Chan, Rebecca Lo, Xiao Tan, Agnes Noy, David M. Lawson, Tung B. K. Le
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2020.491425

Stream Microbial Community Structured by Trace Elements, Headwater Dispersal, and Large Reservoirs in Sub-Alpine and Urban Ecosystems
Cited by: 5
Author(s): Erin Jones, Natasha A. Griffin, Julia E. Kelso, Gregory T. Carling, Michelle A. Baker, Zachary T. Aanderud
Software Mentions: 4
Published: almost 4 years ago

10.3389/fcimb.2020.608020

Investigating Major Recurring Campylobacter jejuni Lineages in Luxembourg Using Four Core or Whole Genome Sequencing Typing Schemes
Cited by: 12
Author(s): Morgane Nennig, Ann-Katrin Llarena, Malte Herold, Joël Mossong, Christian Penny, Serge Losch, Odile Tresse, Catherine Ragimbeau
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2019.00708

Antimicrobial Resistance Diversity Suggestive of Distinct Salmonella Typhimurium Sources or Selective Pressures in Food-Production Animals
Cited by: 24
Author(s): Kate C. Mellor, Liljana Petrovska, Nicholas R. Thomson, Kate Harris, S. Reid, Alison E. Mather
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2018.01201

Microbial Community Structure and Associations During a Marine Dinoflagellate Bloom
Cited by: 93
Author(s): Jin Zhou, Mindy L. Richlen, Taylor R. Sehein, David M. Kulis, Donald M. Anderson, Zhonghua Cai
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2016.01688

Systems Biomedicine of Rabies Delineates the Affected Signaling Pathways
Cited by: 19
Author(s): Sadegh Azimzadeh Jamalkandi, Sayed‐Hamidreza Mozhgani, Hamid Gholami Pourbadie, Mehdi Mirzaie, Farshid Noorbakhsh, Behrouz Vaziri, Alireza Gholami, Naser Ansari-Pour, Mohieddin Jafari
Software Mentions: 4
Published: about 8 years ago

10.1186/s12866-020-01827-2

Vital members in the gut microbiotas altered by two probiotic Bifidobacterium strains against liver damage in rats
Cited by: 8
Author(s): Hua Zha, Daiqiong Fang, Aimee L. van der Reis, Kevin Chang, Liya Yang, Jiao-Jiao Xie, Ding Shi, Qiaomai Xu, Yating Li
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2020.579290

Spatiotemporal Patterns in Diversity and Assembly Process of Marine Protist Communities of the Changjiang (Yangtze River) Plume and Its Adjacent Waters
Cited by: 8
Author(s): Xin Guo, Lianghuan Wu, Lingfeng Huang
Software Mentions: 4
Published: about 4 years ago

10.3389/fmed.2021.685124

Network Analysis of Outpatients to Identify Predictive Symptoms and Combinations of Symptoms Associated With Positive/Negative SARS-CoV-2 Nasopharyngeal Swabs
Cited by: 4
Author(s): Hervé Spechbach, Frédérique Jacquerioz, Virginie Prendki, Laurent Kaiser, Mikaëla Smit, Alexandra Calmy, François Chappuis, Idris Guessous, Julien Salamun, Stéphanie Baggio
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2020.526898

Seasonal Changes in Pinus tabuliformis Root-Associated Fungal Microbiota Drive N and P Cycling in Terrestrial Ecosystem
Cited by: 12
Author(s): Haihua Wang, Honglong Chu, Qing Dou, Huijin Feng, Ming Tang, Shuoxin Zhang, Chunyan Wang
Software Mentions: 4
Published: almost 4 years ago

10.1038/s42003-020-01636-3

Single-cell transcriptomics following ischemic injury identifies a role for B2M in cardiac repair
Cited by: 39
Author(s): Bas Molenaar, Louk T. Timmer, Marjolein Droog, Ilaria Perini, Daniëlle Versteeg, Lieneke Kooijman, Jantine Monshouwer-Kloots, Hesther de Ruiter, Monika M Gladka, Eva van Rooij
Software Mentions: 4
Published: almost 4 years ago

10.1038/s42003-021-02210-1

The power and promise of genetic mapping from Plasmodium falciparum crosses utilizing human liver-chimeric mice
Cited by: 10
Author(s): Katrina A. Button-Simons, Sudhir Kumar, Nelly Carmago, Haile, Catherine Jett, Lisa A. Checkley, Spencer Y. Kennedy, Richard S. Pinapati, Douglas A. Shoue, Marina McDew-White, X Li, François Nosten, Stefan H. I. Kappe, Jeanne Romero‐Severson, Ferdig, Scott J. Emrich, Ashley M. Vaughan, Ian H. Cheeseman
Software Mentions: 4
Published: over 3 years ago

10.1186/s12918-014-0108-0

Network signatures link hepatic effects of anti-diabetic interventions with systemic disease parameters
Cited by: 4
Author(s): Thomas Kelder, Lars Verschuren, Ben van Ommen, Alain J. van Gool, Marijana Radonjić
Software Mentions: 3
Published: about 10 years ago

10.1186/s40478-018-0524-2

Integrated proteomics and network analysis identifies protein hubs and network alterations in Alzheimer’s disease
Cited by: 111
Author(s): Qi Zhang, Cheng Ma, Marla Gearing, Peng George Wang, Lih‐Shen Chin, Lian Li
Software Mentions: 3
Published: over 6 years ago

10.1007/s13593-021-00668-1

Social-ecological analysis of timely rice planting in Eastern India
Cited by: 7
Author(s): Anton Urfels, Andrew J. McDonald, Gerardo van Halsema, P.C. Struik, Pankaj Kumar, R. K. Malik, Shishpal Poonia, Balwinder-Singh, Deepak Singh, Mukesh Kumar Singh, Timothy J. Krupnik
Software Mentions: 3
Published: almost 4 years ago

10.1016/j.anbehav.2015.12.007

Measuring the robustness of network community structure using assortativity
Cited by: 64
Author(s): Daizaburo Shizuka, Damien R. Farine
Software Mentions: 3
Published: almost 9 years ago

10.1186/s42523-021-00088-2

Effect of milk replacer allowance on calf faecal bacterial community profiles and fermentation
Cited by: 11
Author(s): Shiv Kumar, M. A. Khan, Emma Beijer, Jinxin Liu, Katherine K. Lowe, Wayne Young, David A. Mills, Christina D. Moon
Software Mentions: 3
Published: over 3 years ago

10.1186/s42523-021-00116-1

Molecular and culture-based assessment of the microbiome in a zebrafish (Danio rerio) housing system during set-up and equilibration
Cited by: 4
Author(s): Aaron C. Ericsson, Susheel Bhanu Busi, Daniel R. Davis, Henda Nabli, David C. Eckhoff, Rebecca A. Dorfmeyer, Giedre Turner, Payton S. Oswalt, Marcus J Crim, Elizabeth C. Bryda
Software Mentions: 3
Published: over 3 years ago

10.1007/s41109-018-0087-y

An illustrated approach to Soft Textual Cartography
Cited by: 1
Author(s): Raphaël Ceré, Mattia Egloff
Software Mentions: 3
Published: over 6 years ago

10.1186/1471-2105-13-75

Quantitatively integrating molecular structure and bioactivity profile evidence into drug-target relationship analysis
Cited by: 5
Author(s): Tianlei Xu, Ruixin Zhu, Qi Liu, Zhiwei Cao
Software Mentions: 3
Published: over 12 years ago

10.1186/s12859-019-2915-1

Difficulty in inferring microbial community structure based on co-occurrence network approaches
Cited by: 103
Author(s): Hokuto Hirano, Kazuhiro Takemoto
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2105-11-378

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
Cited by: 366
Author(s): Petr Novák, Pavel Neumann, Jiří Macas
Software Mentions: 3
Published: over 14 years ago

10.1186/s12859-019-2900-8

Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis
Cited by: 10
Author(s): Denise Thiel, Nataša Djurdjevac Conrad, Evgenia Ntini, Ria X. Peschutter, Heike Siebert, Annalisa Marsico
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2105-16-S13-S9

Understanding and predicting binding between human leukocyte antigens (HLAs) and peptides by network analysis
Cited by: 18
Author(s): Heng Luo, Yue Hao, Hui Wen Ng, Leming Shi, Weida Tong, William B. Mattes, Donna L. Mendrick, Huasheng Hong
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12859-021-04155-y

DeepNetBim: deep learning model for predicting HLA-epitope interactions based on network analysis by harnessing binding and immunogenicity information
Cited by: 13
Author(s): Xiaoyun Yang, Liyuan Zhao, Wei Fang, Jing Li
Software Mentions: 3
Published: over 3 years ago

10.1186/s12859-018-2426-5

SyNDI: synchronous network data integration framework
Cited by: 1
Author(s): Erno Lindfors, Jesse C. J. van Dam, Carolyn M.C. Lam, Niels A. Zondervan, Vítor A. P. Martins dos Santos, María Suárez-Diez
Software Mentions: 3
Published: about 6 years ago

10.1186/s12859-019-3041-9

Analyzing the regulation of miRNAs on protein-protein interaction network in Hodgkin lymphoma
Cited by: 2
Author(s): Huimin Lei, Wenxu Liu, Jiarui Si, Ju Wang, Tao Zhang
Software Mentions: 3
Published: about 5 years ago

10.1186/s12859-016-0989-6

caOmicsV: an R package for visualizing multidimensional cancer genomic data
Cited by: 3
Author(s): Hongen Zhang, Paul S. Meltzer, Sean Davis
Software Mentions: 3
Published: over 8 years ago

10.1186/s12885-019-6180-5

Genome-wide expression profiling in colorectal cancer focusing on lncRNAs in the adenoma-carcinoma transition
Cited by: 35
Author(s): Alexandra Kalmár, Zsófia Brigitta Nagy, Orsolya Galamb, István Csabai, András Bodor, Barnabás Wichmann, Gábor Valcz, Barbara Kinga Barták, Zsolt Tulassay, Péter Igaz, Béla Molnár
Software Mentions: 3
Published: about 5 years ago

10.1186/s12906-021-03340-z

A systems pharmacology approach based on oncogenic signalling pathways to determine the mechanisms of action of natural products in breast cancer from transcriptome data
Cited by: 2
Author(s): Regan Odongo, Asuman Demiroğlu-Zergeroğlu, Tunahan Çakır
Software Mentions: 3
Published: over 3 years ago

10.1186/s12862-015-0534-7

A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels
Cited by: 86
Author(s): Gianni Monaco, Sipko van Dam, João Luis Casal Novo Ribeiro, Anis Larbi, João Pedro de Magalhães
Software Mentions: 3
Published: about 9 years ago

10.1186/s12862-017-1101-1

Musculoskeletal networks reveal topological disparity in mammalian neck evolution
Cited by: 25
Author(s): Patrick Arnold, Borja Esteve‐Altava, Martin S. Fischer
Software Mentions: 3
Published: almost 7 years ago

10.1186/1471-2164-15-1144

Co-acting gene networks predict TRAIL responsiveness of tumour cells with high accuracy
Cited by: 1
Author(s): Paul G. O’Reilly, Csaba Ortutay, Gráinne Gernon, Enda O’Connell, Cathal Seoighe, Susan Boyce, Luís Serrano, Éva Szegezdi
Software Mentions: 3
Published: almost 10 years ago

Projects: pypi: igraph

Papers Mentioning igraph 1,555