Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: igraph

https://packages.ecosyste.ms/registries/pypi.org/packages/igraph

High performance graph data structures and algorithms
28 versions
Latest release: about 1 year ago
126 dependent packages
1,074,658 downloads last month

Papers Mentioning igraph 1,555

10.1371/journal.pcbi.1008832
Collective predator evasion: Putting the criticality hypothesis to the test
Cited by: 17
Author(s): Pascal P. Klamser, Pawel Romanczuk
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pcbi.1006525
Steered molecular dynamics simulations reveal critical residues for (un)binding of substrates, inhibitors and a product to the malarial M1 aminopeptidase
Cited by: 8
Author(s): Daniel Moore, Conor Brines, Heather Jewhurst, John P. Dalton, Irina G. Tikhonova
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pcbi.1006796
Conformational coupling by trans-phosphorylation in calcium calmodulin dependent kinase II
Cited by: 5
Author(s): Alessandro Pandini, Howard Schulman, Shahid Khan
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pcbi.1004597
Distinctive Behaviors of Druggable Proteins in Cellular Networks
Cited by: 41
Author(s): Costas Mitsopoulos, Amanda C. Schierz, Paul Workman, Bissan Al‐Lazikani
Software Mentions: 2
Published: almost 9 years ago
10.1155/2014/487069
An Improved<i>Physarum polycephalum</i>Algorithm for the Shortest Path Problem
Cited by: 10
Author(s): Xiaoge Zhang, Qing Wang, Andrew Adamatzky, Felix T.S. Chan, Sankaran Mahadevan, Yong Deng
Software Mentions: 2
Published: almost 11 years ago
10.1371/journal.pcbi.1003302
A Comprehensive Survey of Small-Molecule Binding Pockets in Proteins
Cited by: 102
Author(s): Mu Gao, Jeffrey Skolnick
Software Mentions: 2
Published: about 11 years ago
10.1186/1471-2105-11-343
A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network
Cited by: 92
Author(s): Zhu-Hong You, Zhimin Yin, Kyungsook Han, Dongqing Huang, Xiaobo Zhou
Software Mentions: 2
Published: over 14 years ago
10.1371/journal.pcbi.1004067
Exploring Bacterial Organelle Interactomes: A Model of the Protein-Protein Interaction Network in the Pdu Microcompartment
Cited by: 24
Author(s): Julien Jorda, Yu Liu, Thomas A. Bobik, Todd O. Yeates
Software Mentions: 2
Published: almost 10 years ago
10.1371/journal.pcbi.1002187
Heat Shock Partially Dissociates the Overlapping Modules of the Yeast Protein-Protein Interaction Network: A Systems Level Model of Adaptation
Cited by: 56
Author(s): Ágoston Mihalik, Péter Csermely
Software Mentions: 2
Published: about 13 years ago
10.1186/s40064-016-2022-y
The topology of the directed clique complex as a network invariant
Cited by: 24
Author(s): Paolo Masulli, Alessandro E. P. Villa
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pcbi.1006888
Predicting synthetic lethal interactions using conserved patterns in protein interaction networks
Cited by: 29
Author(s): Graeme Benstead-Hume, Xiangrong Chen, Suzanna R. Hopkins, Karen A. Lane, Jessica A. Downs, Frances M. G. Pearl
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pcbi.1003549
Within-Host Bacterial Diversity Hinders Accurate Reconstruction of Transmission Networks from Genomic Distance Data
Cited by: 146
Author(s): Colin J. Worby, Marc Lipsitch, William P. Hanage
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pcbi.1004372
Do Brain Networks Evolve by Maximizing Their Information Flow Capacity?
Cited by: 33
Author(s): Chris G. Antonopoulos, Suraj Srivastava, Sandro Ely de Souza Pinto, Murilo S. Baptista
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pbio.1001869
Network Analyses Reveal Pervasive Functional Regulation Between Proteases in the Human Protease Web
Cited by: 135
Author(s): Nikolaus Fortelny, Jennifer H. Cox, Reinhild Kappelhoff, Amanda E. Starr, Philipp F. Lange, Paul Pavlidis, Christopher M. Overall
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pbio.1002515
Topological Small-World Organization of the Fibroblastic Reticular Cell Network Determines Lymph Node Functionality
Cited by: 93
Author(s): Mario Novković, Lucas Onder, Jovana Cupovic, Jun Abe, David Bomze, Viviana Cremasco, Elke Scandella, Jens V Stein, Gennady Bocharov, Shannon J. Turley, Burkhard Ludewig
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pbio.2002612
A multiscale cerebral neurochemical connectome of the rat brain
Cited by: 33
Author(s): Hamid Noori, Judith Schöttler, Mária Ercsey-Ravasz, Alejandro Cosa‐Linan, Melinda Varga, Zoltán Toroczkai, Rainer Spanagel
Software Mentions: 2
Published: over 7 years ago
10.1111/jvim.16058
Peri‐ictal magnetic resonance imaging characteristics in dogs with suspected idiopathic epilepsy
Cited by: 11
Author(s): Aran Nagendran, J. Fraser McConnell, Luisa De Risio, Roberto José‐López, R. Gutierrez Quintana, Kelsey Robinson, Simon Platt, Daniel Sánchez Masián, Thomas W. Maddox, Rita Gonçalves
Software Mentions: 2
Published: almost 4 years ago
10.1186/s40814-021-00835-x
Feasibility study of peer-led and school-based social network Intervention (STASH) to promote adolescent sexual health
Cited by: 6
Author(s): Kirstin R Mitchell, Carrie Purcell, Sharon Anne Simpson, Chiara Broccatelli, Julia Bailey, Sarah Barry, Lawrie Elliott, Ross Forsyth, Rachael Hunter, Mark McCann, Lisa McDaid, Kirsty Wetherall, Linda Moore
Software Mentions: 2
Published: over 3 years ago
10.1094/PHYTO-03-18-0072-R
Modeling Epidemics in Seed Systems and Landscapes To Guide Management Strategies: The Case of Sweet Potato in Northern Uganda
Cited by: 25
Author(s): Kelsey F. Andersen, Christopher E. Buddenhagen, Paul Rachkara, R. W. Gibson, Stephen W. Kalule, David P. Phillips, Karen A. Garrett
Software Mentions: 2
Published: about 5 years ago
10.1098/rstb.2014.0241
Dynamics of immunoglobulin sequence diversity in HIV-1 infected individuals
Cited by: 30
Author(s): Kenneth B. Hoehn, Astrid Gall, Rachael Bashford-Rogers, Sarah Fidler, Steve Kaye, Jonathan Weber, Myra O. McClure, Spartac Trial Investigators, Paul Kellam, Oliver G. Pybus
Software Mentions: 2
Published: about 9 years ago
10.1186/s13063-021-05584-z
Improving the continuity and coordination of ambulatory care through feedback and facilitated dialogue—a study protocol for a cluster-randomised trial to evaluate the ACD study (Accountable Care in Germany)
Cited by: 5
Author(s): Leonie Sundmacher, Ronja Flemming, Verena Leve, Isabel Geiger, Sebastian Franke, Thomas Czihal, Clemens Krause, Birgitt Wiese, Frank Meyer, Matthias Brittner, Johannes Pollmanns, Johannes J. Martin, Paul Brandenburg, Annemarie Schultz, Emmanuelle Brua, Udo Schneider, Olga Dortmann, Christoph Rupprecht, Stefan Wilm, Wiebke Schüttig
Software Mentions: 2
Published: about 3 years ago
10.7717/peerj.9632
The brain-derived neurotrophic factor Val66Met polymorphism increases segregation of structural correlation networks in healthy adult brains
Cited by: 4
Author(s): Issei Ueda, Kazuhiro Takemoto, Keita Watanabe, Katsuhisa Sugimoto, Atsuko Ikenouchi, Shingo Kakeda, Asuka Katsuki, Reiji Yoshimura, Yukunori Korogi
Software Mentions: 2
Published: over 4 years ago
10.7717/peerj.3321
Ranking of critical species to preserve the functionality of mutualistic networks using the <i>k</i>-core decomposition
Cited by: 14
Author(s): Javier García-Algarra, M. Pastor, José María Iriondo, Javier Galeano
Software Mentions: 2
Published: over 7 years ago
10.1186/s12859-019-2746-0
Topological and functional comparison of community detection algorithms in biological networks
Cited by: 37
Author(s): Sara Rahiminejad, Mano Ram Maurya, Shankar Subramaniam
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.8749
Potential of the economic valuation of soil-based ecosystem services to inform sustainable soil management and policy
Cited by: 20
Author(s): Bartosz Bartkowski, Stephan Bartke, Katharina Helming, Carsten Paul, Anja-Kristina Techen, Bernd Hansjürgens
Software Mentions: 2
Published: over 4 years ago
10.1186/s12859-020-03702-3
ImmunoGlobe: enabling systems immunology with a manually curated intercellular immune interaction network
Cited by: 6
Author(s): Michelle Atallah, Varun Tandon, Kamir J Hiam-Galvez, Hunter Boyce, Michelle Hori, Waleed Atallah, Matthew H. Spitzer, Edgar G. Engleman, Parag Mallick
Software Mentions: 2
Published: over 4 years ago
10.3390/pathogens9121077
Analysis of Risk Factors for African Swine Fever in Lombardy to Identify Pig Holdings and Areas Most at Risk of Introduction in Order to Plan Preventive Measures
Cited by: 2
Author(s): Silvia Bellini, Alessandra Scaburri, Marco Tironi, Stefania Calò
Software Mentions: 2
Published: almost 4 years ago
10.3390/pathogens10080922
Transmission Dynamics of Bovine Viral Diarrhea Virus in Hokkaido, Japan by Phylogenetic and Epidemiological Network Approaches
Cited by: 3
Author(s): Shizuka Hirose, Kosuke Notsu, Satoshi Itō, Yoshihiro Sakoda, Norikazu Isoda
Software Mentions: 2
Published: over 3 years ago
10.1186/s40695-020-00060-1
Racial differences in lifestyle, demographic, and health factors associated with quality of life (QoL) in midlife women
Cited by: 4
Author(s): Brandi Patrice Smith, Esmeralda Cardoso-Mendoza, Jodi A. Flaws, Zeynep Madak-Erdoğan
Software Mentions: 2
Published: almost 4 years ago
10.12688/wellcomeopenres.15268.2
Study design and protocol for investigating social network patterns in rural and urban schools and households in a coastal setting in Kenya using wearable proximity sensors
Cited by: 5
Author(s): Moses Chapa Kiti, Alessia Melegaro, Ciro Cattuto, D. James Nokes
Software Mentions: 2
Published: over 5 years ago
10.1016/j.isci.2021.102846
Functional physiological phenotyping with functional mapping: A general framework to bridge the phenotype-genotype gap in plant physiology
Cited by: 5
Author(s): Arun K. Pandey, Libo Jiang, Menachem Moshelion, Sanbon Chaka Gosa, Ting Sun, Lin Qin, Rongling Wu, Pei Xu
Software Mentions: 2
Published: over 3 years ago
10.3390/v12101087
Network Controllability-Based Prioritization of Candidates for SARS-CoV-2 Drug Repositioning
Cited by: 4
Author(s): Emily E. Ackerman, Jason E. Shoemaker
Software Mentions: 2
Published: about 4 years ago
10.3390/v4123625
A Systems Biology Starter Kit for Arenaviruses
Cited by: 0
Author(s): Magali E. Droniou-Bonzom, Paula M. Cannon
Software Mentions: 2
Published: almost 12 years ago
10.1186/s13567-014-0110-y
Not all cows are epidemiologically equal: quantifying the risks of bovine viral diarrhoea virus (BVDV) transmission through cattle movements
Cited by: 31
Author(s): M. Carolyn Gates, R.W. Humphry, George J. Gunn, Mark Woolhouse
Software Mentions: 2
Published: about 10 years ago
10.1155/2021/8708023
Tear Film Proteome of Healthy Domestic Cats
Cited by: 2
Author(s): Jéssica Fontes Veloso, Paula Elisa Brandão Guedes, Luciana Carvalho Lacerda, Juliano Oliveira Santana, Irma Yuliana Mora-Ocampo, Carlos Priminho Pirovani, Arianne Pontes Oriá, Alexandre Dias Munhoz, Renata Santiago Alberto Carlos
Software Mentions: 2
Published: over 3 years ago
10.1186/s12859-019-2917-z
A dual controllability analysis of influenza virus-host protein-protein interaction networks for antiviral drug target discovery
Cited by: 8
Author(s): Emily E. Ackerman, John F. Alcorn, Takeshi Hase, Jason E. Shoemaker
Software Mentions: 2
Published: over 5 years ago
10.1128/mSystems.00357-19
Progressive Microbial Community Networks with Incremental Organic Loading Rates Underlie Higher Anaerobic Digestion Performance
Cited by: 14
Author(s): Linwei Wu, Xiaoyu Shan, Si Chen, Qiuting Zhang, Qi Qi, Ziyan Qin, Huaqun Yin, Jizhong Zhou, Qiang He, Yunfeng Yang
Software Mentions: 2
Published: almost 5 years ago
10.1007/s11252-017-0724-8
The application of graph theory and percolation analysis for assessing change in the spatial configuration of pond networks
Cited by: 10
Author(s): Ian Thornhill, Lesley Batty, Matthew J. Hewitt, Nikolai Friberg, Mark E. Ledger
Software Mentions: 2
Published: almost 7 years ago
10.15252/msb.20156484
An inter‐species protein–protein interaction network across vast evolutionary distance
Cited by: 42
Author(s): Quan Zhong, Samuel Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick J. Haley, Ryan R. Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, S. Balaji, Lila Ghamsari, Michael A. Calderwood, Thomas Rolland, Benoît Charloteaux, Susan Lindquist, Albert‐László-L. Barabási, David E. Hill, Patrick Aloy, Michael E. Cusick, Yu Xia, Frederick P. Roth, Marc Vidal
Software Mentions: 2
Published: over 8 years ago
10.15252/msb.20188594
High‐resolution mapping of cancer cell networks using co‐functional interactions
Cited by: 61
Author(s): Evan A. Boyle, Jonathan K. Pritchard, William J. Greenleaf
Software Mentions: 2
Published: almost 6 years ago
10.1002/mgg3.659
Prioritization and comprehensive analysis of genes related to major depressive disorder
Cited by: 12
Author(s): Yi Liu, Ping Fan, Shiyuan Zhang, Yidan Wang, Dan Liŭ
Software Mentions: 2
Published: over 5 years ago
10.3390/molecules26061664
PepFun: Open Source Protocols for Peptide-Related Computational Analysis
Cited by: 11
Author(s): Rodrigo Ochoa, Pilar Cossio
Software Mentions: 2
Published: over 3 years ago
10.1128/mSystems.01213-20
Interkingdom Gut Microbiome and Resistome of the Cockroach <i>Blattella germanica</i>
Cited by: 11
Author(s): Rebeca Domínguez‐Santos, Ana Elena Pérez‐Cobas, Paolo Cuti, Vicente Pérez‐Brocal, Carlos García-Ferris, Andrés Moya, Amparo Latorre, Rosario Gil
Software Mentions: 2
Published: over 3 years ago
10.3390/molecules24061081
CuDDI: A CUDA-Based Application for Extracting Drug-Drug Interaction Related Substance Terms from PubMed Literature
Cited by: 2
Author(s): Ling Yin, Aditya Chandra Vothgod Ramachandra, Minh Pham, Yi-Cheng Tu, Feng Cheng
Software Mentions: 2
Published: over 5 years ago
10.1016/j.molcel.2016.07.008
Molecular Principles of Gene Fusion Mediated Rewiring of Protein Interaction Networks in Cancer
Cited by: 57
Author(s): Natasha S. Latysheva, Matt Oates, Louis Maddox, Tilman Flock, Julian Gough, Marija Buljan, Robert J. Weatheritt, M. Madan Babu
Software Mentions: 2
Published: over 8 years ago
10.1093/molbev/msv058
An<i>Arabidopsis</i>Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors
Cited by: 129
Author(s): Jinpu Jin, Kongwang He, Xing Tang, Zhe Li, Le Lv, Yi Zhao, Jianxun Luo, Ge Gao
Software Mentions: 2
Published: over 9 years ago
10.1128/mSystems.00394-21
A Scale-Free, Fully Connected Global Transition Network Underlies Known Microbiome Diversity
Cited by: 4
Author(s): Gongchao Jing, Yufeng Zhang, Lu Liu, Zengbin Wang, Zheng Sun, Rob Knight, Xiaoquan Su, Jian Xu
Software Mentions: 2
Published: about 3 years ago
10.1093/molbev/msz152
Coevolution of Sites under Immune Selection Shapes Epstein–Barr Virus Population Structure
Cited by: 19
Author(s): Fanny Wegner, Florent Lassalle, Daniel P. Depledge, François Balloux, Judith Breuer
Software Mentions: 2
Published: over 5 years ago
10.1002/humu.22906
Network-Informed Gene Ranking Tackles Genetic Heterogeneity in Exome-Sequencing Studies of Monogenic Disease
Cited by: 5
Author(s): Nick Dand, Reiner Schulz, Michael E. Weale, Laura Southgate, Rebecca J. Oakey, Michael A. Simpson, Thomas Schlitt
Software Mentions: 2
Published: about 9 years ago
10.1186/1471-2105-13-35
Assessing statistical significance in causal graphs
Cited by: 11
Author(s): Leonid Chindelevitch, Po‐Ru Loh, Ahmed Enayetallah, Bonnie Berger, Daniel Ziemek
Software Mentions: 2
Published: almost 13 years ago
10.1038/s41396-018-0232-8
Genetic correlation network prediction of forest soil microbial functional organization
Cited by: 56
Author(s): Bin Ma, Kankan Zhao, Xiaofei Lv, Weiqin Su, Zhongmin Dai, Jack A. Gilbert, Philip C. Brookes, Karoline Faust, Jianming Xu
Software Mentions: 2
Published: over 6 years ago
10.1038/s41396-021-00957-3
Light exposure mediates circadian rhythms of rhizosphere microbial communities
Cited by: 32
Author(s): Kankan Zhao, Bin Ma, Yan Xu, Erinne Stirling, Jianming Xu
Software Mentions: 2
Published: over 3 years ago
10.3390/microorganisms7120586
Root-Associated Fungal Communities in Two Populations of the Fully Mycoheterotrophic Plant Arachnitis uniflora Phil. (Corsiaceae) in Southern Chile
Cited by: 12
Author(s): Héctor Herrera, Javiera Soto, Luz E. de Bashan, Inmaculada Sampedro, César Arriagada
Software Mentions: 2
Published: about 5 years ago
10.3390/microorganisms6040101
A Metabolomic-Based Evaluation of the Role of Commensal Microbiota throughout the Gastrointestinal Tract in Mice
Cited by: 20
Author(s): Yurie Yamamoto, Yumiko Nakanishi, S. Murakami, Wanping Aw, Tomoya Tsukimi, Ryoko Nozu, Masaki Ueno, Kyoji Hioki, Kenji Nakahigashi, Akiyoshi Hirayama, Masahiro Sugimoto, Tomoyoshi Soga, Mamoru Ito, Masaru Tomita, Shinji Fukuda
Software Mentions: 2
Published: about 6 years ago
10.1186/2042-5783-2-8
Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli
Cited by: 8
Author(s): Lars Snipen, Trudy M. Wassenaar, Eric Altermann, Jonathan W. Olson, Sophia Kathariou, Karin Lagesen, Mónica Takamiya, Susanne Knøchel, David W. Ussery, Richard J. Meinersmann
Software Mentions: 2
Published: about 12 years ago
10.1099/mgen.0.000203
Extended-spectrum β-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins
Cited by: 25
Author(s): Catherine Branger, Alice Ledda, Typhaine Billard-Pomarès, Benoît Doublet, Stéphanie Fouteau, Valérie Barbe, David Roche, Stéphane Cruveiller, Claudine Médigue, Miguel Sautié Castellanos, Dominique Decré, Laurence Drieux-Rouze, Olivier Clermont, Jérémy Glodt, Olivier Tenaillon, Axel Cloeckaert, Guillaume Arlet, Erick Denamur
Software Mentions: 2
Published: about 6 years ago
10.1038/s41396-019-0567-9
Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems
Cited by: 222
Author(s): Zhongmin Dai, Guofei Liu, Huaihai Chen, Chengrong Chen, Jingkuan Wang, Shaoying Ai, Dan Wei, Daming Li, Bin Ma, Caixian Tang, Philip C. Brookes, Jianming Xu
Software Mentions: 2
Published: almost 5 years ago
10.1099/mgen.0.000157
Dynamic sporulation gene co-expression networks for Bacillus subtilis 168 and the food-borne isolate Bacillus amyloliquefaciens: a transcriptomic model
Cited by: 4
Author(s): Jimmy Omony, Anne de Jong, Antonina O. Krawczyk, Robyn T. Eijlander, Oscar P. Kuipers
Software Mentions: 2
Published: almost 7 years ago
10.3390/md16100356
Metabolomic Investigations on Nesterenkonia flava Revealed Significant Differences between Marine and Terrestrial Actinomycetes
Cited by: 16
Author(s): Conghua Xie, Jin‐Mei Xia, Junsong Wang, Donghai Lin, Xian‐Wen Yang
Software Mentions: 2
Published: about 6 years ago
10.1186/1475-2875-12-397
The demographics of human and malaria movement and migration patterns in East Africa
Cited by: 56
Author(s): Deepa Pindolia, Andrés J. García, Zhengjing Huang, David L. Smith, Victor A. Alegana, Abdisalan M. Noor, Robert W. Snow, Andrew J. Tatem
Software Mentions: 2
Published: about 11 years ago
10.18632/oncotarget.7293
Mutanome and expression of immune response genes in microsatellite stable colon cancer
Cited by: 6
Author(s): Rebeca Sanz‐Pamplona, Raúl Gil-Hoyos, Adriana López-Dóriga, M. Henar Alonso, Susanna Aussó, David G. Mollevı́, Cristina Santos, Xavier Sanjuán, Ramón Salazar, Ramón Alemany, Vı́ctor Moreno
Software Mentions: 2
Published: almost 9 years ago
10.16910/jemr.11.4.1
Using Eye Movement Data Visualization to Enhance Training of Air Traffic Controllers: A Dynamic Network Approach
Cited by: 5
Author(s): Saptarshi Mandal, Ziho Kang
Software Mentions: 2
Published: over 6 years ago
10.5194/aab-63-19-2020
Proximity patterns in water buffaloes' activities on pasture
Cited by: 0
Author(s): Eleni T. Tsiobani, M. D. Yiakoulaki, Nikolaos Hasanagas, Ioannis Antoniou
Software Mentions: 2
Published: almost 5 years ago
10.1186/s12967-019-1947-7
Cytokine expression in Treponema pallidum infection
Cited by: 6
Author(s): Noah Kojima, Janet Siebert, Holden T. Maecker, Yael Rosenberg-Hasson, Segundo R. León, Silver K. Vargas, Kelika A. Konda, Carlos F. Caceres, Jeffrey D. Klausner
Software Mentions: 2
Published: over 5 years ago
10.1155/2019/2146391
Genome-Wide Identification and Characterization of the ALOG Domain Genes in Rice
Cited by: 10
Author(s): Na Li, Yang Wang, Jing Lü, Chuan Liu
Software Mentions: 2
Published: over 5 years ago
10.18632/oncotarget.13627
Identification of laryngeal cancer prognostic biomarkers using an inflammatory gene-related, competitive endogenous RNA network
Cited by: 19
Author(s): Qun He, Linli Tian, Hao Jiang, Jiarui Zhang, Qiang Li, Yanan Sun, Jianwen Zhao, Huijun Li, Ming Liu
Software Mentions: 2
Published: almost 8 years ago
10.1186/s12933-021-01349-9
A molecular signature for the metabolic syndrome by urine metabolomics
Cited by: 21
Author(s): Chiara Bruzzone, Rubén Gil‐Redondo, Marisa Seco, Rocío Barragán, Laura de la Cruz, Claire Cannet, Hartmut Schäfer, Fang Fang, Tammo Diercks, Maider Bizkarguenaga, Beatriz González-Valle, Ana Laín, Arantza Sanz-Parra, Óscar Coltell, Ander López de Letona, Manfred Spraul, Shelly C. Lu, Elisabetta Buguianesi, Nieves Embade, Quentin M. Anstee, Dolores Corella, José M. Mato, Óscar Millet
Software Mentions: 2
Published: over 3 years ago
10.1002/cam4.1821
Surgeon peer network characteristics and adoption of new imaging techniques in breast cancer: A study of perioperative MRI
Cited by: 12
Author(s): Sara Tannenbaum, Pamela R. Soulos, Jeph Herrin, Craig Evan Pollack, Xiao Xu, Nicholas A. Christakis, Howard P. Forman, James B. Yu, Brigid K. Killelea, Shi Yi Wang, Cary P. Gross
Software Mentions: 2
Published: about 6 years ago
10.1093/braincomms/fcaa216
Retrospective analysis of hemispheric structural network change as a function of location and size of glioma
Cited by: 8
Author(s): Shawn D’Souza, Lisa Hirt, D. Ryan Ormond, John A. Thompson
Software Mentions: 2
Published: almost 4 years ago
10.1186/s13059-016-1003-3
Integrating epigenomic data and 3D genomic structure with a new measure of chromatin assortativity
Cited by: 44
Author(s): Véra Pancaldi, Enrique Carrillo de Santa Pau, Biola M. Javierre, David Juan, Peter Fraser, Mikhail Spivakov, Alfonso Valencia, Daniel Rico
Software Mentions: 2
Published: over 8 years ago
10.1186/s13059-015-0772-4
New genes drive the evolution of gene interaction networks in the human and mouse genomes
Cited by: 85
Author(s): Wenyu Zhang, Patrick Landback, Andrea R. Gschwend, Bairong Shen, Manyuan Long
Software Mentions: 2
Published: about 9 years ago
10.1186/gb-2013-14-8-r85
Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits
Cited by: 15
Author(s): Molly Megraw, Sayan Mukherjee, Uwe Ohler
Software Mentions: 2
Published: almost 12 years ago
10.3390/ijerph16071223
Impacts of Road Traffic Network and Socioeconomic Factors on the Diffusion of 2009 Pandemic Influenza A (H1N1) in Mainland China
Cited by: 32
Author(s): Bo Xu, Huaiyu Tian, Clive E. Sabel, Bing Xu
Software Mentions: 2
Published: over 5 years ago
10.1186/1297-9686-44-17
Genetic diversity and networks of exchange: a combined approach to assess intra-breed diversity
Cited by: 12
Author(s): Jean-François Dumasy, Christel Daniaux, Isabelle Donnay, Philippe Baret
Software Mentions: 2
Published: over 12 years ago
10.3390/genes12050740
Evolution of Reproductive Life History in Mammals and the Associated Change of Functional Constraints
Cited by: 6
Author(s): Jiaqi Wu, Takahiro Yonezawa, Hirohisa Kishino
Software Mentions: 2
Published: over 3 years ago
10.1038/s41416-020-01257-x
Comparative analysis of drug response and gene profiling of HER2-targeted tyrosine kinase inhibitors
Cited by: 27
Author(s): Neil T. Conlon, Jeffrey J. Kooijman, Suzanne J.C. van Gerwen, Winfried R. Mulder, Guido J.R. Zaman, Irmina Diala, Lisa DeFazio-Eli, Alshad S. Lalani, John Crown, Denis M. Collins
Software Mentions: 2
Published: almost 4 years ago
10.3390/genes11030247
Network Properties of Cancer Prognostic Gene Signatures in the Human Protein Interactome
Cited by: 0
Author(s): Jifeng Zhang, Shoubao Yan, Cheng Jiang, Zhicheng Ji, Chenrun Wang, Weidong Tian
Software Mentions: 2
Published: over 4 years ago
10.3390/genes10100776
Patterns and Constraints in the Evolution of Sperm Individualization Genes in Insects, with an Emphasis on Beetles
Cited by: 1
Author(s): Helena I. Vizán‐Rico, Christoph Mayer, Malte Petersen, Duane D. McKenna, Xin Zhou, Jesús Gómez‐Zurita
Software Mentions: 2
Published: about 5 years ago
10.1093/g3journal/jkab131
Effects of kinship correction on inflation of genetic interaction statistics in commonly used mouse populations
Cited by: 4
Author(s): Anna L. Tyler, Bahá El Kassaby, Georgi Kolishovski, J. J. Emerson, Ann Wells, James Mahoney, Gregory W. Carter
Software Mentions: 2
Published: over 3 years ago
10.1534/g3.118.200260
A<i>Cyclin E</i>Centered Genetic Network Contributes to Alcohol-Induced Variation in Drosophila Development
Cited by: 14
Author(s): Tatiana V. Morozova, Yasmeen N. Hussain, Lenovia J. McCoy, Eugenea V Zhirnov, Morgan R. Davis, Victoria A. Pray, Rachel A Lyman, Laura Duncan, Anna McMillen, Aiden Jones, Trudy F. C. Mackay, Robert R. H. Anholt
Software Mentions: 2
Published: over 6 years ago
10.1093/biosci/biv122
Ecological Networks in Stored Grain: Key Postharvest Nodes for Emerging Pests, Pathogens, and Mycotoxins
Cited by: 67
Author(s): John Fredy Hernández Nopsa, Gregory J. Daglish, David W. Hagstrum, John F. Leslie, Thomas W. Phillips, Caterina Scoglio, Sara Thomas-Sharma, Gimme H. Walter, Karen A. Garrett
Software Mentions: 2
Published: about 9 years ago
10.3390/ijerph17010090
Potential Confounders in the Analysis of Brazilian Adolescent’s Health: A Combination of Machine Learning and Graph Theory
Cited by: 3
Author(s): Amanda Yumi Ambriola Oku, Guilherme Augusto Zimeo Morais, Ana Paula Arantes Bueno, André Fujita, João Ricardo Sato
Software Mentions: 2
Published: almost 5 years ago
10.3389/fvets.2019.00071
Equine Rhinitis A Virus Infection at a Standardbred Training Facility: Incidence, Clinical Signs, and Risk Factors for Clinical Disease
Cited by: 3
Author(s): T. M. Rossi, Alison Moore, Terri L. O’Sullivan, Amy L. Greer
Software Mentions: 2
Published: over 5 years ago
10.1186/s13073-014-0052-z
Molecularly and clinically related drugs and diseases are enriched in phenotypically similar drug-disease pairs
Cited by: 15
Author(s): Ingo Vogt, Jeanette Prinz, Mónica Campillos
Software Mentions: 2
Published: over 10 years ago
10.3389/fvets.2016.00048
Impact of Network Activity on the Spread of Infectious Diseases through the German Pig Trade Network
Cited by: 20
Author(s): Karin Lebl, Hartmut H. K. Lentz, Beate Pinior, Thomas Selhorst
Software Mentions: 2
Published: over 8 years ago
10.3389/fvets.2016.00004
Spatial and Functional Organization of Pig Trade in Different European Production Systems: Implications for Disease Prevention and Control
Cited by: 32
Author(s): Anne A. Relun, Vladimir Grosbois, José Manuel Sánchez-Vizcaíno, Tsviatko Alexandrov, Francesco Feliziani, Agnès Waret-Szkuta, Sophie Molia, Éric Etter, Beatriz Martínez‐López
Software Mentions: 2
Published: almost 9 years ago
10.1186/s13073-017-0507-0
Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients
Cited by: 23
Author(s): Danesh Moradigaravand, Theodore Gouliouris, Beth Blane, Plamena Naydenova, Catherine Ludden, Charles Crawley, Nicholas M. Brown, M. Estée Török, Julian Parkhill, Sharon J. Peacock
Software Mentions: 2
Published: almost 7 years ago
10.3389/fvets.2019.00454
Implications of Cattle Trade for the Spread and Control of Infectious Diseases in Slovenia
Cited by: 17
Author(s): Tanja Knific, M. Ocepek, Andrej Kirbiš, Hartmut H. K. Lentz
Software Mentions: 2
Published: almost 5 years ago
10.3389/fnsys.2021.645709
Network Path Convergence Shapes Low-Level Processing in the Visual Cortex
Cited by: 2
Author(s): Bálint Varga, Bettina Soós, Balázs Jákli, Erika Bálint, Zoltán Somogyvári, László Négyessy
Software Mentions: 2
Published: over 3 years ago
10.3389/fnsys.2021.580569
Adaptive Rewiring in Weighted Networks Shows Specificity, Robustness, and Flexibility
Cited by: 8
Author(s): Ilias Rentzeperis, Cees van Leeuwen
Software Mentions: 2
Published: over 3 years ago
10.1007/s41109-021-00355-w
Lost and found: applying network analysis to public health contact tracing for HIV
Cited by: 0
Author(s): Dana K. Pasquale, Irene A. Doherty, Peter A. Leone, Ann M. Dennis, Erika Samoff, Constance S. Jones, John E Barnhart, William C. Miller
Software Mentions: 2
Published: almost 4 years ago
10.3389/fpsyg.2015.00603
Network-based characterization of brain functional connectivity in Zen practitioners
Cited by: 36
Author(s): Phebe Brenne Kemmer, Ying Guo, Yi‐Kai Wang, Giuseppe Pagnoni
Software Mentions: 2
Published: over 9 years ago
10.3389/fpsyg.2015.01111
Second language social networks and communication-related acculturative stress: the role of interconnectedness
Cited by: 58
Author(s): Marina M. Doucerain, Raheleh S. Varnaamkhaasti, Norman Segalowitz, Andrew G. Ryder
Software Mentions: 2
Published: over 9 years ago
10.3390/ijerph17051764
Relationship of Salivary Microbiome with the Worsening of the Periodontal Health Status in Young Adults: A 3-Year Cohort Study
Cited by: 1
Author(s): Monirul Islam, Daisuke Ekuni, Naoki Toyama, Terumasa Kobayashi, Kohei Fujimori, Yuzo Uchida, Daiki Fukuhara, Ayano Taniguchi-Tabata, Koichi Kataoka, Yoshiaki Iwasaki, Manabu Morita
Software Mentions: 2
Published: over 4 years ago
10.3389/fpls.2017.01029
Evidence and Consequence of a Highly Adapted Clonal Haplotype within the Australian Ascochyta rabiei Population
Cited by: 23
Author(s): Yasir Mehmood, Prabhakaran Thanjavur Sambasivam, Sukhjiwan Kaur, J. A. Davidson, Audrey E. Leo, Kristy Hobson, Celeste C. Linde, Kevin Moore, Jeremy C. Brownlie, Rebecca Ford
Software Mentions: 2
Published: over 7 years ago
10.3389/fpls.2014.00598
Integrated network analysis and effective tools in plant systems biology
Cited by: 40
Author(s): Atsushi Fukushima, Shigehiko Kanaya, Kozo Nishida
Software Mentions: 2
Published: about 10 years ago
10.3390/ijerph17124182
Statistical and Network-Based Analysis of Italian COVID-19 Data: Communities Detection and Temporal Evolution
Cited by: 12
Author(s): Marianna Milano, Mario Cannataro
Software Mentions: 2
Published: over 4 years ago
10.3390/biology10090921
MIDESP: Mutual Information-Based Detection of Epistatic SNP Pairs for Qualitative and Quantitative Phenotypes
Cited by: 3
Author(s): Felix Heinrich, Faisal Ramzan, Abirami Rajavel, Armin O. Schmitt, Mehmet Gültaş
Software Mentions: 2
Published: about 3 years ago
10.1093/gigascience/gix054
iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D
Cited by: 20
Author(s): Vaja Liluashvili, Selim Kalayci, Eugene Fluder, Manda Wilson, Aaron Gabow, Zeynep H. Gümüş
Software Mentions: 2
Published: over 7 years ago
10.3389/fpls.2018.01467
Paving the Way From the Lab to the Field: Using Synthetic Microbial Consortia to Produce High-Quality Crops
Cited by: 55
Author(s): Zhaochen Kong, Miranda M. Hart, Hongguang Liu
Software Mentions: 2
Published: about 6 years ago