pypi: igraph | Projects | Ecosyste.ms: Papers

10.1186/s12859-021-04216-2

Exploring the functional composition of the human microbiome using a hand-curated microbial trait database
Cited by: 8
Author(s): Jake L. Weissman, Sonia Dogra, Keyan Javadi, Samantha Bolten, Rachel Flint, Cyrus Davati, Jess Beattie, Keshav Dixit, Tejasvi Peesay, Shehar Awan, Peter Thielen, Florian P. Breitwieser, Philip L. Johnson, David Karig, William F. Fagan, Sharon Bewick
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0112821

Community Structure Detection for Overlapping Modules through Mathematical Programming in Protein Interaction Networks
Cited by: 17
Author(s): Laura Bennett, Aristotelis Kittas, Songsong Liu, Lazaros G. Papageorgiou, Sophia Tsoka
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0216784

Sexual network and detection of anogenital human papillomavirus in a community cohort of men who have sex with men in Taiwan
Cited by: 4
Author(s): Carol Strong, Yi Fang Yu, Huachun Zou, Wen Wei Ku, Chia Wen Lee, Nai Ying Ko
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0198166

Novel genetic associations for blood pressure identified via gene-alcohol interaction in up to 570K individuals across multiple ancestries
Cited by: 83
Author(s): Mary F. Feitosa, Aldi T. Kraja, Daniel I. Chasman, Yun Ju Sung, Thomas W. Winkler, Ιωάννα Ντάλλα, Xiuqing Guo, Nora Franceschini, Ching‐Yu Cheng, Xueling Sim, Dina Vojinović, Jonathan Marten, Solomon K. Musani, Changwei Li, Amy R. Bentley, M. R. W. Brown, Karen Schwander, Melissa A. Richard, Raymond Noordam, Hugues Aschard, Traci M. Bartz, Lawrence F. Bielak, Rajkumar Dorajoo, Virginia Fisher, Fernando Pires Hartwig, Andrea R V R Horimoto, Kurt Lohman, Alisa K. Manning, Tuomo Rankinen, Albert V. Smith, Salman M. Tajuddin, Mary K. Wojczynski, Maris Alver, Mathilde Boissel, Qiuyin Cai, Archie Campbell, Jin Chai, Xu Chen, Jasmin Divers, Chuan Gao, Anuj Goel, Yanick Hagemeijer, Sarah E. Harris, Meian He, Fang Chi Hsu, Anne Jackson, Mika Kähönen, Anuradhani Kasturiratne, Pirjo Komulainen, Brigitte Kühnel, Federica Laguzzi, Jian’an Luan, Nana Matoba, Ilja M. Nolte, Sandosh Padmanabhan, Muhammad Riaz, Rico Rueedi, Antonietta Robino, M. Abdullah Said, Robert A. Scott, Tamar Sofer, Alena Stančáková, Fumihiko Takeuchi, Bamidele O. Tayo, Peter J. van der Most, Tibor V. Varga, Véronique Vitart, Yajuan Wang, Erin B. Ware, Helen R. Warren, Stefan Weiß, Wanqing Wen, Lisa R. Yanek, Weihua Zhang, Jing Hua Zhao, Saima Afaq, Najaf Amin, Marzyeh Amini, Dan E. Arking, Tin Aung, Eric Boerwinkle, Ingrid B. Borecki, Ulrich Broeckel, Morris J. Brown, Marco Brumat, Gregory L. Burke, Mickaël Canouil, Aravinda Chakravarti, Charumathi Sabanayagam, Yii Der Ida Chen, John Connell, Adolfo Correa, Lisa de las Fuentes, Renée de Mutsert, H. Janaka De Silva, Xuan Deng, Jingzhong Ding, Qing Duan, Charles B. Eaton, Georg Ehret, Ruben N. Eppinga, Εvangelos Εvangelou, Jessica D. Faul, Stephan B. Felix, Nita G. Forouhi, Terrence Forrester, Oscar H. Franco, Yechiel Friedlander, Ilaria Gandin, He Gao, Mohsen Ghanbari, Bruna Gigante, C. Charles Gu, Dongfeng Gu, Saskia Hagenaars, Göran Hallmans, Tamara B. Harris, Jiang He, Sami Heikkinen, Chew Kiat Heng, Makoto Hirata, Barbara V. Howard, M. Arfan Ikram, Ulrich John, Tomohiro Katsuya, Chiea Chuen Khor, Tuomas O. Kilpeläinen, Woon Puay Koh, José Eduardo Krieger, Stephen B. Kritchevsky, Michiaki Kubo, Johanna Kuusisto, Timo A. Lakka, Carl D. Langefeld, Claudia Langenberg, Lenore J. Launer, Benjamin Lehne, Cora E. Lewis, Yize Li, Shiow J. Lin, Jianjun Li, Jingmin Liu, Marie Loh, Tin Louie, Reedik Mägi, Colin A. McKenzie, Thomas Meitinger, Andres Metspalu, Yuri Milaneschi, Lili Milani, Karen L. Mohlke, Yukihide Momozawa, Mike A. Nalls, Christopher P. Nelson, Nona Sotoodehnia, Jill M. Norris, Jeff O’Connell, Thomas T. Perls, Nancy L. Pedersen, Annette Peters, Patricia A. Peyser, Neil Poulter, Leslie J. Raffel, Olli T. Raitakari, Kathryn Roll, Lynda M. Rose, Frits R. Rosendaal, Jerome I. Rotter, Carsten Oliver Schmidt, Pamela J. Schreiner, Nicole Schupf, William R. Scott, Peter Sever, Yuan Shi, Stephen Sidney, Mario Sims, Colleen M. Sitlani, Jennifer A. Smith, Harold Snieder, John M. Starr, Konstantin Strauch, Heather M. Stringham, Nicholas Tan, Hua Tang, Kent D. Taylor, Yik Ying Teo, Yih Chung Tham, Stephen T. Turner, André G. Uitterlinden, Péter Vollenweider, Mélanie Waldenberger, Lihua Wang, Ya Xing Wang, Wen Bin Wei, Christine A. Williams, Jie Yao, Caizheng Yu, Jian Min Yuan, Wei Zhao, Alan B. Zonderman, Diane M. Becker, Michael Boehnke, Donald W. Bowden, John C. Chambers, Ian J. Deary, Tõnu Esko, Martin Farrall, Paul W. Franks, Barry I. Freedman, Philippe Froguel, Paolo Gasparini, Christian Gieger, Jost B. Jonas, Yoichiro Kamatani, Norihiro Kato, Jaspal S. Kooner, Zoltán Kutalik, Markku Laakso, Cathy C. Laurie, Karin Leander, Terho Lehtimäki, Patrik K. E. Magnusson, Albertine J. Oldehinkel, Brenda W. J. H. Penninx, Ozren Polašek, David J. Porteous, Rainer Rauramaa, Nilesh J. Samani, James G. Scott, Xiao Ou Shu, Pim van der Harst, Lynne E. Wagenknecht, Nicholas J. Wareham, Hugh Watkins, David R. Weir, Ananda R. Wickremasinghe, Tangchun Wu, Wei Zheng, Claude Bouchard, Kaare Christensen, Michele K. Evans, Vilmundur Gudnason, Bernardo Lessa Horta, Sharon L.R. Kardia, Yongmei Liu, Alexandre C. Pereira, Bruce M. Psaty, Paul M. Ridker, Rob M. van Dam, W. James Gauderman, Xiaofeng Zhu, Dennis O. Mook‐Kanamori, Myriam Fornage, Charles N. Rotimi, L. Adrienne Cupples, Tanika N. Kelly, Ervin R. Fox, Caroline Hayward, Cornelia M. van Duijn, E. Shyong Tai, Tien Yin Wong, Charles Kooperberg, Walter Palmas, Kenneth Rice, Alanna C. Morrison, Paul Elliott, Mark J. Caulfield, Patricia B. Munroe, D. C. Rao, Michael A. Province, Daniel Levy
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0016932

Novel Feature for Catalytic Protein Residues Reflecting Interactions with Other Residues
Cited by: 11
Author(s): Yizhou Li, Gongbing Li, Zhining Wen, Hui Yin, Manman Hu, Jiamin Xiao, Menglong Li
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0160919

Anomaly Detection in Host Signaling Pathways for the Early Prognosis of Acute Infection
Cited by: 12
Author(s): Kun Wang, Stanley Langevin, Corey S. O’Hern, Mark D. Shattuck, Serenity Ogle, Adriana Forero, Juliet Morrison, Richard A. Slayden, Michael G. Katze, Michael Kirby
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0158161

How to Study the City on Instagram
Cited by: 54
Author(s): John D. Boy, Justus Uitermark
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-018-34846-1

Brain structural connectivity and neuroticism in healthy adults
Cited by: 14
Author(s): Issei Ueda, Shingo Kakeda, Keita Watanabe, Katsuhisa Sugimoto, Natsuki Igata, Junji Moriya, Kazuhiro Takemoto, Asuka Katsuki, Reiji Yoshimura, Osamu Abe, Yukunori Korogi
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms22031097

In Silico Inference of Synthetic Cytotoxic Interactions from Paclitaxel Responses
Cited by: 0
Author(s): Jeong Hoon Lee, Kye Hwa Lee, Ju Han Kim
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0200079

Urothelial bladder cancer may suppress perforin expression in CD8+ T cells by an ICAM-1/TGFβ2 mediated pathway
Cited by: 14
Author(s): Ciputra Adijaya Hartana, Emma Ahlén Bergman, Ali Zirakzadeh, David H. Krantz, Malin E. Winerdal, Max Winerdal, Markus Johansson, Farhood Alamdari, Tomasz Jakubczyk, Hans Glise, Katrine Riklund, Amir Sherif, Ola Winqvist
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-018-37208-z

Characterizing both bacteria and fungi improves understanding of the Arabidopsis root microbiome
Cited by: 116
Author(s): Joy Bergelson, Jana Mittelstrass, Matthew Horton
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0007441

Stability of Metabolic Correlations under Changing Environmental Conditions in Escherichia coli – A Systems Approach
Cited by: 34
Author(s): Jędrzej Szymański, Szymon Józefczuk, Zoran Nikoloski, Joachim Selbig, Victoria J. Nikiforova, Gareth Catchpole, Lothar Willmitzer
Software Mentions: 2
Published: about 15 years ago

10.1186/1471-2164-13-438

Exploration of the core metabolism of symbiotic bacteria
Cited by: 12
Author(s): Cecília C. Klein, Ludovic Cottret, Janice Kielbassa, Hubert Charles, Christian Gautier, Ana Tereza Ribeiro de Vasconcelos, Vincent Lacroix, Marie‐France Sagot
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-018-38329-1

Inferring pathogen-host interactions between Leptospira interrogans and Homo sapiens using network theory
Cited by: 18
Author(s): Swapnil Kumar, Kumari Snehkant Lata, Priyanka Sharma, Shivarudrappa B. Bhairappanavar, Subhash Soni, Jayashankar Das
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-018-37976-8

Unique skull network complexity of Tyrannosaurus rex among land vertebrates
Cited by: 19
Author(s): Ingmar Werneburg, Borja Esteve‐Altava, Joana Bruno, Marta Torres Ladeira, Rui Diogo
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-38658-9

Validation and quality assessment of macromolecular structures using complex network analysis
Cited by: 21
Author(s): Jure Pražnikar, Miloš Tomić, Dušan Turk
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-016-2364-4

Pangenome-wide and molecular evolution analyses of the Pseudomonas aeruginosa species
Cited by: 72
Author(s): Jeanneth Mosquera-Rendón, Ana Mercedes Rada, Sonia Cárdenas-Brito, Mauricio Corredor, Eliana Restrepo-Pineda, Alfonso Benı́tez-Páez
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0237471

Diffusing science through social networks: The case of breastfeeding communication on Twitter
Cited by: 9
Author(s): Sara Moukarzel, Martin Rehm, Miguel del Fresno, Alan J. Daly
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0161474

BRIDES: A New Fast Algorithm and Software for Characterizing Evolving Similarity Networks Using Breakthroughs, Roadblocks, Impasses, Detours, Equals and Shortcuts
Cited by: 4
Author(s): Étienne Lord, Margaux Le Cam, Éric Bapteste, Raphaël Méheust, Vladimir Makarenkov, François‐Joseph Lapointe
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-019-43596-7

The impact of rare but severe vaccine adverse events on behaviour-disease dynamics: a network model
Cited by: 28
Author(s): S.K. Bhattacharyya, Amit Vutha, Chris T. Bauch
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0213741

Movements of scalloped hammerhead sharks (Sphyrna lewini) at Cocos Island, Costa Rica and between oceanic islands in the Eastern Tropical Pacific
Cited by: 37
Author(s): Elena Nalesso, Alex Hearn, Óscar Sosa-Nishizaki, Todd Steiner, Alex Antoniou, Andrew Reid, Sandra Bessudo, Germán Soler, A. Peter Klimley, Frida Lara, James T. Ketchum, Rándall Arauz
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-44314-z

First use of anatomical networks to study modularity and integration of heads, forelimbs and hindlimbs in abnormal anencephalic and cyclopic vs normal human development
Cited by: 14
Author(s): Rui Diogo, Janine M. Ziermann, Christopher M. Smith, Malak Alghamdi, Jose S. M. Fuentes, André J. Duerinckx
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0121002

Fast Approximate Quadratic Programming for Graph Matching
Cited by: 115
Author(s): Joshua T. Vogelstein, John M. Conroy, Vince Lyzinski, Louis J. Podrazik, Steven G. Kratzer, Eric T. Harley, Donniell E. Fishkind, R. Jacob Vogelstein, Carey E. Priebe
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0241453

Keystone actors do not act alone: A business ecosystem perspective on sustainability in the global clothing industry
Cited by: 16
Author(s): Jacob Hileman, Ivan Simon Kallstenius, Tiina Häyhä, Celinda Palm, Sarah Cornell
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0170817

Trends of the World Input and Output Network of Global Trade
Cited by: 24
Author(s): R. Maria del Rio-Chanona, Jelena Grujić, Henrik Jeldtoft Jensen
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms22073497

ceRNA Network Regulation of TGF-β, WNT, FOXO, Hedgehog Pathways in the Pharynx of Ciona robusta
Cited by: 4
Author(s): Aiti Vizzini, Angela Bonura, Laura La Paglia, Antonino Fiannaca, Massimo La Rosa, Alfonso Urso, Vincenzo Arizza
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0223779

Inhibitory interaction networks among coevolved Streptomyces populations from prairie soils
Cited by: 5
Author(s): Daniel Schlatter, Zewei Song, Patricia Vaz-Jauri, Linda L. Kinkel
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0033799

Hierarchy Measure for Complex Networks
Cited by: 193
Author(s): Enys Mones, Lilla Vicsek, Tamás Vicsek
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0112775

Time Development in the Early History of Social Networks: Link Stabilization, Group Dynamics, and Segregation
Cited by: 17
Author(s): Jesper Bruun, I. G. Bearden
Software Mentions: 2
Published: about 10 years ago

10.1186/1471-2164-11-380

Response of the mosquito protein interaction network to dengue infection
Cited by: 44
Author(s): Xiang Guo, Yao–Zhong Xu, Guowu Bian, Andrew Pike, Yan Xie, Zhiyong Xi
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0087042

Positive Network Assortativity of Influenza Vaccination at a High School: Implications for Outbreak Risk and Herd Immunity
Cited by: 77
Author(s): Victoria C Barclay, Timo Smieszek, Jianping He, Guohong Cao, Jeanette J. Rainey, Hongjiang Gao, Amra Uzicanin, Marcel Salathé
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0237168

Spatiotemporal network structure among “friends of friends” reveals contagious disease process
Cited by: 2
Author(s): Carmel Witte, Laura L. Hungerford, Bruce A. Rideout, Rebecca Papendick, James H. Fowler
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0095049

The Potential Connectivity of Waterhole Networks and the Effectiveness of a Protected Area under Various Drought Scenarios
Cited by: 22
Author(s): Georgina O’Farrill, Kim Gauthier Schampaert, Bronwyn Rayfield, Örjan Bodin, Sophie Calmé, Raja Sengupta, Andrew Gonzalez
Software Mentions: 2
Published: over 10 years ago

10.1038/s41598-019-53266-3

Segregation of age-related skin microbiome characteristics by functionality
Cited by: 52
Author(s): Hye-Jin Kim, Jin Ju Kim, Nu Ri Myeong, Taeyune Kim, DooA Kim, Shi An, Hanbyul Kim, Taehun Park, Seongman Jang, Jae Ho Yeon, Ilyoung Kwack, Woo Jun Sul
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0195161

In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis
Cited by: 39
Author(s): Dás P, Boyang Ji, Petia Kovatcheva‐Datchary, Fredrik Bäckhed, Jens Nielsen
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0140085

Seasonal Influenza Vaccination amongst Medical Students: A Social Network Analysis Based on a Cross-Sectional Study
Cited by: 19
Author(s): Rhiannon Edge, Joseph J. Heath, Barry Rowlingson, Thomas Keegan, Rachel Isba
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2105-8-88

Regulation of metabolic networks by small molecule metabolites
Cited by: 28
Author(s): Alex Gutteridge, Minoru Kanehisa, Susumu Goto
Software Mentions: 2
Published: over 17 years ago

10.1371/journal.pone.0172867

Network analysis of wildfire transmission and implications for risk governance
Cited by: 71
Author(s): Alan A. Ager, Cody Evers, Michelle A. Day, Haiganoush K. Preisler, Ana M. G. Barros, Max Nielsen-Pincus
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2164-16-S7-S18

Systems analysis of gene ontology and biological pathways involved in post-myocardial infarction responses
Cited by: 10
Author(s): Nguyen T. Nguyen, Merry L. Lindsey, Yu Jin
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0213221

A meta-analysis of multiple matched aCGH/expression cancer datasets reveals regulatory relationships and pathway enrichment of potential oncogenes
Cited by: 1
Author(s): Richard Newton, Lorenz Wernisch
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-018-4959-4

Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures
Cited by: 85
Author(s): Matej Medvecký, Darina Čejková, Ondřej Polanský, Daniela Karasova, Tereza Kubasová, Alois Čížek, Ivan Rychlı́k
Software Mentions: 2
Published: over 6 years ago

10.1186/s12862-019-1446-8

Host specialisation and disparate evolution of Pyrenophora teres f. teres on barley and barley grass
Cited by: 7
Author(s): Celeste C. Linde, Leon M. Smith
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0205295

Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattle
Cited by: 31
Author(s): Pablo Augusto de Souza Fonseca, Samir Id‐Lahoucine, Antônio Reverter, Juan F. Medrano, M. R. S. Fortes, J. Casellas, F. Miglior, Luiz F. Brito, Maria Raquel Santos Carvalho, F.S. Schenkel, Loan Nguyen, Laércio R. Porto-Neto, M. G. Thomas, Ángela Cánovas
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0190001

Graph complexity analysis identifies an ETV5 tumor-specific network in human and murine low-grade glioma
Cited by: 5
Author(s): Yuan Pan, Christina Durón, Erin C. Bush, Yu Ma, Peter A. Sims, David H. Gutmann, Ami Radunskaya, Johanna Hardin
Software Mentions: 2
Published: over 6 years ago

10.2196/12914

Identifying Influence Agents That Promote Physical Activity Through the Simulation of Social Network Interventions: Agent-Based Modeling Study
Cited by: 24
Author(s): Thabo J. van Woudenberg, Bojan Simoski, Eric Fernandes de Mello Araújo, Kirsten E. Bevelander, William J. Burk, Crystal R. Smit, Laura Buijs, Michel Klein, Moniek Buijzen
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0020298

Time-Ordered Networks Reveal Limitations to Information Flow in Ant Colonies
Cited by: 100
Author(s): Benjamin Blonder, Anna Dornhaus
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0176751

Using null models to infer microbial co-occurrence networks
Cited by: 64
Author(s): Nora Connor, Albert Barberán, Aaron Clauset
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-62523-9

Estimating degree–degree correlation and network cores from the connectivity of high–degree nodes in complex networks
Cited by: 14
Author(s): Raúl J. Mondragón
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-62204-7

Adaptive rewiring evolves brain-like structure in weighted networks
Cited by: 5
Author(s): Ilias Rentzeperis, Cees van Leeuwen
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-63222-1

Quantitative Analysis of Salivary Oral Bacteria Associated with Severe Early Childhood Caries and Construction of Caries Assessment Model
Cited by: 20
Author(s): Lijuan Zhang, Tongzheng Sun, Pengfei Zhu, Zheng Sun, Shanshan Li, Fan Li, Ying Zhang, Kaixuan Tan, Jie Lu, Rui Yuan, Zhenggang Chen, Dawei Guo, Qingyuan Guo, Fei Teng, Fang Yang
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0230693

Urban foraging: Land management policy, perspectives, and potential
Cited by: 27
Author(s): Mallika Sardeshpande, Charlie M. Shackleton
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-020-64808-5

Fungal communities and their association with nitrogen-fixing bacteria affect early decomposition of Norway spruce deadwood
Cited by: 29
Author(s): María Gómez-Brandòn, Maraike Probst, J.A. Siles, Ursula Peintner, Tommaso Bardelli, Markus Egli, Heribert Insam, Judith Ascher‐Jenull
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0238626

Do economic shocks spread randomly?: A topological study of the global contagion network
Cited by: 4
Author(s): Tamás Sebestyén, Zita Iloskics
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0174671

Collaboration patterns in the German political science co-authorship network
Cited by: 14
Author(s): Philip Leifeld, Sandra Andrea Wankmüller, Valentin Tim Zacharias Berger, Karin Ingold, Christiane Steiner
Software Mentions: 2
Published: over 7 years ago

10.2196/18457

Two Decades of Research Using Taiwan’s National Health Insurance Claims Data: Bibliometric and Text Mining Analysis on PubMed
Cited by: 23
Author(s): Sheng Feng Sung, Cheng‐Yang Hsieh, Yu Hu
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0222222

Are unpopular children more likely to get sick? Longitudinal links between popularity and infectious diseases in early childhood
Cited by: 4
Author(s): Vidar Ulset, Nikolai Olavi Czajkowski, Brage Kraft, Pål Kraft, Ellen Wikenius, Thomas Haarklau Kleppestø, Mona Bekkhus
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-68805-6

Minimal fatal shocks in multistable complex networks
Cited by: 18
Author(s): Lukas Halekotte, Ulrike Feudel
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0184532

Emergence of encounter networks due to human mobility
Cited by: 35
Author(s): Alejandro P. Riascos, José L. Mateos
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0016365

Detecting Instability in Animal Social Networks: Genetic Fragmentation Is Associated with Social Instability in Rhesus Macaques
Cited by: 53
Author(s): Brianne A. Beisner, Megan E. Jackson, Ashley Cameron, Brenda McCowan
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0110088

Active Semi-Supervised Community Detection Based on Must-Link and Cannot-Link Constraints
Cited by: 23
Author(s): Jianjun Cheng, Mingwei Leng, Longjie Li, Hanhai Zhou, Xiaoyun Chen
Software Mentions: 2
Published: about 10 years ago

10.1038/s41598-020-70239-z

Pathway-specific model estimation for improved pathway annotation by network crosstalk
Cited by: 11
Author(s): Miguel Castresana-Aguirre, Erik L. L. Sonnhammer
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0225554

Location, location, location: Close ties among older continuing care retirement community residents
Cited by: 4
Author(s): Liat Ayalon, Inbal Yahav
Software Mentions: 2
Published: almost 5 years ago

10.2196/jmir.7643

Identifying Opinion Leaders to Promote Organ Donation on Social Media: Network Study
Cited by: 34
Author(s): Jingyuan Shi, Charles T. Salmon
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0255604

Examining the sources of evidence in e-cigarette policy recommendations: A citation network analysis of international public health recommendations
Cited by: 6
Author(s): Marissa J. Smith, Andrew J Baxter, Kathryn Skivington, Mark McCann, Shona Hilton, Srinivasa Vittal Katikireddi
Software Mentions: 2
Published: over 3 years ago

10.1186/1471-2148-11-89

Expression level, cellular compartment and metabolic network position all influence the average selective constraint on mammalian enzymes
Cited by: 24
Author(s): Corey Hudson, Gavin C. Conant
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0179915

Network analysis of pig movements: Loyalty patterns and contact chains of different holding types in Denmark
Cited by: 25
Author(s): Jana Schulz, Anette Boklund, Tariq Hisham Beshara Halasa, Nils Toft, Hartmut H. K. Lentz
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-74964-3

An equity-oriented rethink of global rankings with complex networks mapping development
Cited by: 11
Author(s): Loredana Bellantuono, A. Monaco, Sabina Tangaro, Nicola Amoroso, Vincenzo Aquaro, R. Bellotti
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0241516

Processes and outcomes of diabetes mellitus care by different types of team primary care models
Cited by: 5
Author(s): Fangjian Guo, Yu Li Lin, Mukaila Raji, Bruce Leonard, Lin‐Na Chou, Yong Fang Kuo
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0102633

Phylodynamic Analysis Reveals CRF01_AE Dissemination between Japan and Neighboring Asian Countries and the Role of Intravenous Drug Use in Transmission
Cited by: 16
Author(s): Teiichiro Shiino, Junko Hattori, Yoshiyuki Yokomaku, Yoshinori Iwatani, Wataru Sugiura
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0068581

The Community Structure of the European Network of Interlocking Directorates 2005–2010
Cited by: 31
Author(s): Eelke M. Heemskerk, Fabio Daolio, Marco Tomassini
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0036465

Identification and Validation of Ifit1 as an Important Innate Immune Bottleneck
Cited by: 29
Author(s): Jason McDermott, Keri B. Vartanian, Hugh D. Mitchell, Susan L. Stevens, Antonio Sanfilippo, Mary P. Stenzel-Poore
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0222357

Bourdieu, networks, and movements: Using the concepts of habitus, field and capital to understand a network analysis of gender differences in undergraduate physics
Cited by: 10
Author(s): Steven Martin Turnbull, Kirsten Locke, Frédérique Vanholsbeeck, Dion R. J. O’Neale
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0142407

Coevolved Mutations Reveal Distinct Architectures for Two Core Proteins in the Bacterial Flagellar Motor
Cited by: 8
Author(s): Alessandro Pandini, Jens Kleinjung, Shafqat Rasool, Shahid Khan
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0194901

Detecting hierarchical levels of connectivity in a population of Acacia tortilis at the northern edge of the species’ global distribution: Combining classical population genetics and network analyses
Cited by: 10
Author(s): Yael S. Rodger, Gili Greenbaum, Micha Silver, Shirli Bar‐David, Gidon Winters
Software Mentions: 2
Published: over 6 years ago

10.1186/s13075-016-0914-4

Stress granules and RNA processing bodies are novel autoantibody targets in systemic sclerosis
Cited by: 17
Author(s): Michael E. Johnson, Andrew V. Grassetti, Jaclyn N. Taroni, Shawn M. Lyons, Devin K. Schweppe, Jessica Gordon, Robert Spiera, Robert Lafyatis, Paul Anderson, Scott A. Gerber, Michael L. Whitfield
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0040337

Information Processing in Social Insect Networks
Cited by: 96
Author(s): James S. Waters, Jennifer H. Fewell
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0140030

Anatomical Network Comparison of Human Upper and Lower, Newborn and Adult, and Normal and Abnormal Limbs, with Notes on Development, Pathology and Limb Serial Homology vs. Homoplasy
Cited by: 28
Author(s): Rui Diogo, Borja Esteve‐Altava, Christopher M. Smith, Julia C. Boughner, Diego Rasskin‐Gutman
Software Mentions: 2
Published: about 9 years ago

10.1186/1471-2407-12-331

A systems biology approach to the global analysis of transcription factors in colorectal cancer
Cited by: 25
Author(s): Meeta Pradhan, Nagendra Prasad, Mathew Palakal
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0060982

Autistic Traits in Neurotypical Adults: Correlates of Graph Theoretical Functional Network Topology and White Matter Anisotropy Patterns
Cited by: 30
Author(s): András Jakab, Miklós Emri, Tamás Spisák, Anita Szemán-Nagy, Mónika Béres, Sándor Attila Kis, Péter Molnár, Ervin Berényi
Software Mentions: 2
Published: over 11 years ago

10.2196/21680

Predictors of Health Information Seeking Behavior: A Systematic Review and Network Analysis (Preprint)
Cited by: 16
Author(s): Ardalan Mirzaei, Parisa Aslani, Edward Luca, Carl R. Schneider
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0208227

The geographic evolution of political cleavages in Switzerland: A network approach to assessing levels and dynamics of polarization between local populations
Cited by: 3
Author(s): Shin Alexandre Koseki
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-87318-4

Fragmented sleep relates to hallucinations across perceptual modalities in the general population
Cited by: 5
Author(s): Sanne Brederoo, J N de Boer, Jacqueline de Vries, Mascha M J Linszen, Iris Sommer
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-87555-7

Proteomic profiling of the rat hippocampus from the kindling and pilocarpine models of epilepsy: potential targets in calcium regulatory network
Cited by: 14
Author(s): Leila Sadeghi, Albert A. Rizvanov, Bahareh Dabirmanesh, И. И. Салафутдинов, Mohammad Sayyah, Amir Shojaei, Javad Zahiri, Javad Mirnajafi‐Zadeh, Babak Khorsand, Khosro Khajeh, Yaghoub Fathollahi
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0152123

Who Is Spreading Avian Influenza in the Moving Duck Flock Farming Network of Indonesia?
Cited by: 18
Author(s): Joerg Henning, Dirk U. Pfeiffer, M.A. Stevenson, Didik Yulianto, W. Priyono, J. Meers
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0125725

Using Graph Components Derived from an Associative Concept Dictionary to Predict fMRI Neural Activation Patterns that Represent the Meaning of Nouns
Cited by: 5
Author(s): Hiroyuki Akama, Masakazu Miyake, Jason J. Jung, Brian Murphy
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0038039

Transcriptome Profiling of Citrus Fruit Response to Huanglongbing Disease
Cited by: 141
Author(s): Federico Martinelli, Sandra L. Uratsu, Ute Albrecht, Russell L. Reagan, My L. Phu, Monica Britton, Vincent Buffalo, Joseph Fass, Elizabeth Leicht, Wenwei Zhao, Dazhen Lin, Raissa M. D’Souza, Cristina E. Davis, Kim D. Bowman, Abhaya M. Dandekar
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0027009

Modeling the Mechanism of Action of a DGAT1 Inhibitor Using a Causal Reasoning Platform
Cited by: 24
Author(s): Ahmed Enayetallah, Daniel Ziemek, Michael T. Leininger, Ranjit Randhawa, Jinlin Yang, Tara B. Manion, Dawn Mather, William J. Zavadoski, Max Kühn, Judith L. Treadway, Shelly Ann G. des Etages, E. Michael Gibbs, Nigel Greene, Claire M. Steppan
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0211227

Dissecting a novel allosteric mechanism of cruzain: A computer-aided approach
Cited by: 13
Author(s): Lilian Hernández Alvarez, Diego E. B. Gomes, Jorge Enrique Hernández González, Pedro Geraldo Pascutti
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-90171-0

Network-based analysis of key regulatory genes implicated in Type 2 Diabetes Mellitus and Recurrent Miscarriages in Turner Syndrome
Cited by: 3
Author(s): Anam Farooqui, Alaa Alhazmi, Shafiul Haque, Naaila Tamkeen, Mahboubeh Mehmankhah, Safia Tazyeen, Sher Ali, Romana Ishrat
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0198222

On an algorithmic definition for the components of the minimal cell
Cited by: 2
Author(s): Octavio Martínez, M. Humberto Reyes-Valdés
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pntd.0005659

Challenges in developing methods for quantifying the effects of weather and climate on water-associated diseases: A systematic review
Cited by: 35
Author(s): Giovanni Lo Iacono, Ben Armstrong, Lora E. Fleming, Richard Elson, Sari Kovats, Sotiris Vardoulakis, Gordon Nichols
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2105-12-149

Fast network centrality analysis using GPUs
Cited by: 99
Author(s): Zhiao Shi, Bing Zhang
Software Mentions: 2
Published: over 13 years ago

10.1186/s12859-018-2453-2

A nearest-neighbors network model for sequence data reveals new insight into genotype distribution of a pathogen
Cited by: 3
Author(s): Helen N. Catanese, Kelly A. Brayton, Assefaw H. Gebremedhin
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pntd.0006070

The introduction of dengue follows transportation infrastructure changes in the state of Acre, Brazil: A network-based analysis
Cited by: 41
Author(s): Raquel Martins Lana, Tiago França Melo de Lima, Nildimar Alves Honório, Cláudia Torres Codeço
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pmed.1001810

Geographic and Temporal Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted HIV-1 Drug Resistance: An Individual-Patient- and Sequence-Level Meta-Analysis
Cited by: 187
Author(s): Soo-Yon Rhee, José Luis Santiago Blanco, Michael R. Jordan, Jonathan Taylor, Philippe Lemey, Vici Varghese, Raph L Hamers, Silvia Bertagnolio, Tobias F. Rinke de Wit, Avelin F. Aghokeng, Jan Albert, Radko Avi, Santiago Ávila‐Ríos, Pascal Bessong, James Brooks, Charles A. Boucher, Zabrina L. Brumme, Michael P. Busch, Hermann Bussmann, Marie Laure Chaix, Bum Sik Chin, Toni Thomas d’Aquin, Cillian F. De Gascun, Anne Derache, Diane Descamps, Alaka Deshpande, Cyrille F. Djoko, Susan H. Eshleman, Hervé Fleury, Pierre Frange, Seiichiro Fujisaki, P. Richard Harrigan, Junko Hattori, África Holguín, Gillian Hunt, Hiroshi Ishiguro, Pontiano Kaleebu, David Katzenstein, Sasisopin Kiertiburanakul, Jerome H. Kim, Sung Soon Kim, Yanpeng Li, Irja Lutsar, Lynn Morris, Nicaise Ndembi, Kee Peng Ng, Ramesh Paranjape, Martine Peeters, Mario Poljak, Matt A. Price, Manon Ragonnet‐Cronin, Gustavo Reyes‐Terán, Morgane Rolland, Sunee Sirivichayakul, Davey M. Smith, Marcelo A. Soares, Vincent Soriano, Deogratius Ssemwanga, Maja Stanojević, Mariane A. Stefani, Wataru Sugiura, Somnuek Sungkanuparph, Amílcar Tanuri, Kok Keng Tee, Hong Ha M. Truong, David van de Vijver, Nicole Vidal, Chunfu Yang, Rongge Yang, Gonzalo Yebra, John P. A. Ioannidis, Anne‐Mieke Vandamme, Robert W. Shafer
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pgen.1002612

Metabolic Profiling of a Mapping Population Exposes New Insights in the Regulation of Seed Metabolism and Seed, Fruit, and Plant Relations
Cited by: 109
Author(s): David Toubiana, Yaniv Semel, Takayuki Tohge, Romina Beleggia, Luigi Cattivelli, Leah Rosental, Zoran Nikoloski, Dani Zamir, Alisdair R. Fernie, Aaron Fait
Software Mentions: 2
Published: over 12 years ago

Projects: pypi: igraph

Papers Mentioning igraph 1,555