pypi: house | Projects | Ecosyste.ms: Papers

10.1128/genomeA.01326-14

Draft Genome Sequence of Lactobacillus casei Lbs2
Cited by: 3
Author(s): Swati Bhowmick, Mathu Malar, A. K. Das, Basant Kumar Thakur, Piu Saha, Santasabuj Das, Hogarehalli Mallappa Rashmi, V. K. Batish, Sunita Grover, Sucheta Tripathy
Software Mentions: 1
Published: almost 10 years ago

10.1128/genomeA.00136-15

Whole-Genome Sequencing of a Pandoravirus Isolated from Keratitis-Inducing Acanthamoeba
Cited by: 47
Author(s): Markus Antwerpen, Enrico Georgi, Lothar Zoeller, Roman Woelfel, Kilian Stoecker, Patrick Scheid
Software Mentions: 1
Published: over 9 years ago

10.1128/genomeA.01302-15

Whole-Genome Sequence of Leptospira interrogans Serovar Hardjo Subtype Hardjoprajitno Strain Norma, Isolated from Cattle in a Leptospirosis Outbreak in Brazil
Cited by: 6
Author(s): Maria Raquel Venturim Cosate, Siomar C. Soares, Tiago Antônio de Oliveira Mendes, Roberto Tadeu Raittz, É. C. Moreira, Rômulo Cerqueira Leite, Gabriel R. Fernandes, João Paulo Amaral Haddad, José Miguel Ortega
Software Mentions: 1
Published: almost 9 years ago

10.1128/genomeA.01603-15

Whole-Genome Sequence of Francisella noatunensis subsp. orientalis Strain FNO01 Isolated from Diseased Nile Tilapia in Brazil
Cited by: 4
Author(s): Henrique César Pereira Figueiredo, Carlos Augusto Gomes Leal, Felipe Luiz Pereira, Siomar C. Soares, Lucas Amorim Gonçalves, Fernanda Alves Dorella, Alex F. Carvalho, Vasco Azevedo
Software Mentions: 1
Published: over 8 years ago

10.1128/genomeA.01741-15

Genome Sequence of Bacillus pumilus Strain Bonn, Isolated from an Anthrax-Like Necrotic Skin Infection Site of a Child
Cited by: 7
Author(s): Gregor Grass, Gabriele Bierbaum, Ernst Molitor, Natascha Götte, Markus Antwerpen
Software Mentions: 1
Published: over 8 years ago

10.1128/genomeA.00219-16

Genome Sequence of Bacillus anthracis Strain Stendal, Isolated from an Anthrax Outbreak in Cattle in Germany
Cited by: 10
Author(s): Markus Antwerpen, Mandy C. Elschner, Wolfgang Gaede, Annette Schliephake, Gregor Grass, Herbert Tomaso
Software Mentions: 1
Published: over 8 years ago

10.1128/genomeA.00748-16

Genome Sequence of Bacillus anthracis Strain Tangail-1 from Bangladesh
Cited by: 0
Author(s): Farzana Islam Rume, Markus Antwerpen, Peter Braun, Paritosh Kumar Biswas, Mahmuda Yasmin, Gregor Grass, Chowdhury Rafiqul Ahsan, Matthias Hanczaruk
Software Mentions: 1
Published: about 8 years ago

10.1186/gb-2007-8-5-r73

Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study
Cited by: 48
Author(s): Gabriella Rustici, Harm van Bakel, Daniel H. Lackner, Frank C. P. Holstege, Cisca Wijmenga, Jürg Bähler, Alvis Brāzma
Software Mentions: 1
Published: almost 18 years ago

10.1186/gb-2008-9-10-r156

Changes in protein expression during honey bee larval development
Cited by: 66
Author(s): Queenie Chan, Leonard J. Foster
Software Mentions: 1
Published: almost 17 years ago

10.1093/gbe/evv085

Rapid Acclimation Ability Mediated by Transcriptome Changes in Reef-Building Corals
Cited by: 114
Author(s): Rachael A. Bay, Stephen R. Palumbi
Software Mentions: 1
Published: over 9 years ago

10.1186/s13073-020-00738-1

EM-mosaic detects mosaic point mutations that contribute to congenital heart disease
Cited by: 15
Author(s): Alexander Hsieh, Sarah U. Morton, Jon A. L. Willcox, Joshua M. Gorham, Angela Tai, Hongjian Qi, Steven R. DePalma, David McKean, Emily Griffin, Kathryn B. Manheimer, Daniel Bernstein, Richard W. Kim, Jane W. Newburger, George A. Porter, Deepak Srivastava, Martin Tristani‐Firouzi, Martina Brueckner, Richard P. Lifton, Elizabeth Goldmuntz, Bruce D. Gelb, Wendy K. Chung, Christine E. Seidman, Yufeng Shen
Software Mentions: 1
Published: over 4 years ago

10.1093/gigascience/giy012

Draft genome of the protandrous Chinese black porgy, Acanthopagrus schlegelii
Cited by: 54
Author(s): Zhiyong Zhang, Kai Zhang, Shuyin Chen, Zhiwei Zhang, Jinyong Zhang, Xinxin You, Chao Bian, Jin Xu, Chaofeng Jia, Jun Qiang, Fei Zhu, Hongxia Li, Hailin Liu, D. Rong Shen, Zhonghong Ren, Jieming Chen, Jia Li, Tianheng Gao, Ruobo Gu, Junmin Xu, Qiong Shi, Pao Xu
Software Mentions: 1
Published: over 6 years ago

10.1002/hbm.22999

Differential hippocampal shapes in posterior cortical atrophy patients: A comparison with control and typical <scp>AD</scp> subjects
Cited by: 16
Author(s): Emily Manning, Kate Macdonald, Kelvin K. Leung, Jonathan Young, Tracey Pepple, Manja Lehmann, María A. Zuluaga, M. Jorge Cardoso, Jonathan M. Schott, Sébastien Ourselin, Sebastian J. Crutch, Nick C. Fox, Josephine Barnes
Software Mentions: 1
Published: about 9 years ago

10.1002/hbm.25281

Microstructural alterations in medial forebrain bundle are associated with <scp>interindividual</scp> pain sensitivity
Cited by: 5
Author(s): Maria Geisler, Elizabeth Rizzoni, Nikolaos Makris, Ofer Pasternak, Yogesh Rathi, Sylvain Bouix, Marco Herbsleb, Karl‐Jürgen Bär, Thomas Weiß, Zora Kikinis
Software Mentions: 1
Published: about 4 years ago

10.3390/insects12090787

Transcriptomic Characterization of Odorant Binding Proteins in Cacia cretifera thibetana and Their Association with Different Host Emitted Volatiles
Cited by: 1
Author(s): Ning Zhao, Xiangzhong Mao, Nai-Yong Liu, Ling Liu, Zhixiao Zhang, ZE Sang-zi, Bin Yang
Software Mentions: 1
Published: about 3 years ago

10.1120/jacmp.v8i4.2711

Development of an optimum photon beam model for head-and-neck intensity-modulated radiotherapy
Cited by: 7
Author(s): G. Webster, C. Rowbottom, Ranald I Mackay
Software Mentions: 1
Published: about 17 years ago

10.1120/jacmp.v17i5.6237

Patient-specific 17-segment myocardial modeling on a bull's-eye map
Cited by: 7
Author(s): Joonho Jung, Young–Hak Kim, Namkug Kim, Dong Hyun Yang
Software Mentions: 1
Published: about 8 years ago

10.1002/acm2.12568

Characterization of the HalcyonTMmultileaf collimator system
Cited by: 64
Author(s): Tze Yee Lim, I. Dragojević, David C. Hoffman, Everardo Flores‐Martinez, Gwe Ya Kim
Software Mentions: 1
Published: over 5 years ago

10.1002/acm2.12677

Dosimetric impact and detectability of multi‐leaf collimator positioning errors on Varian Halcyon
Cited by: 11
Author(s): Skylar Gay, Tucker Netherton, Carlos Cárdenas, Rachel B. Ger, Peter A Balter, Lei Dong, Dimitris Mihailidis, Laurence E. Court
Software Mentions: 1
Published: over 5 years ago

10.1002/acm2.13068

Acceptance procedure for the linear accelerator component of the 1.5 T MRI‐linac
Cited by: 14
Author(s): S. Woodings, J.H.W. De Vries, J G M Kok, S. Hackett, Bram van Asselen, J.J. Bluemink, H M van Zijp, T L van Soest, David A. Roberts, J J W Lagendijk, B W Raaymakers, J. Wolthaus
Software Mentions: 1
Published: over 3 years ago

10.1002/acm2.13333

Direct visualization and correlation of liver stereotactic body radiation therapy treatment delivery accuracy with interfractional motion
Cited by: 0
Author(s): S.S. Kuznetsova, Richie Sinha, Kundan Thind, Nicolas Ploquin
Software Mentions: 1
Published: over 3 years ago

10.1074/jbc.RA119.008685

Ligand-dependent spatiotemporal signaling profiles of the μ-opioid receptor are controlled by distinct protein-interaction networks
Cited by: 16
Author(s): Srgjan Civciristov, Cheng Huang, Bonan Liu, Elsa A. Marquez, Arisbel B. Gondin, Ralf B. Schittenhelm, Andrew M. Ellisdon, Meritxell Canals, Michelle L. Halls
Software Mentions: 1
Published: about 5 years ago

10.1074/jbc.RA120.015700

ApoC-III is a novel inducer of calcification in human aortic valves
Cited by: 27
Author(s): Florian Schlotter, Renata Caroline Costa de Freitas, Maximillian A. Rogers, Mark C. Blaser, Pin-Jou Wu, Hideyuki Higashi, Arda Halu, Farwah Iqbal, Allison B. Andraski, Cayla N. Rodia, Shiori Kuraoka, Jennifer Wen, Michael Creager, Tan Pham, Joshua D. Hutcheson, Simon C. Body, Alison B. Kohan, Frank M. Sacks, Masanori Aikawa, Sasha A Singh, Elena Aikawa
Software Mentions: 1
Published: almost 4 years ago

10.1074/jbc.RA120.015307

Cross-seeding between the functional amyloidogenic CRES and CRES3 family members and their regulation of Aβ assembly
Cited by: 4
Author(s): Hoa Quynh, Aveline Hewetson, Collin G. Borcik, Mary Hastert, Sandra Whelly, Benjamin J. Wylie, R. Bryan Sutton, Gail A. Cornwall
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.jbc.2021.100345

A lipid-anchored neurokinin 1 receptor antagonist prolongs pain relief by a three-pronged mechanism of action targeting the receptor at the plasma membrane and in endosomes
Cited by: 11
Author(s): N. Quynh, Priyank Shenoy, Tim Quach, Jeffri S. Retamal, Arisbel B. Gondin, Holly R. Yeatman, Luigi Aurelio, Joshua Conner, Daniel P. Poole, Meritxell Canals, Cameron J. Nowell, Bim Graham, Thomas P. Davis, Stephen J. Briddon, Stephen J. Hill, Christopher John Porter, Nigel W. Bunnett, Michelle L. Halls, Nicholas A. Veldhuis
Software Mentions: 1
Published: almost 4 years ago

10.1111/jcmm.13702

Modelling cadmium‐induced cardiotoxicity using human pluripotent stem cell‐derived cardiomyocytes
Cited by: 33
Author(s): Jiaxi Shen, Xiaochen Wang, Danni Zhou, Tongyu Li, Ling Tang, Tingyu Gong, Jun Su, Ping Liang
Software Mentions: 1
Published: over 6 years ago

10.1111/jcmm.16508

Long non‐coding RNA MFAT1 promotes skeletal muscle fibrosis by modulating the miR‐135a‐5p‐Tgfbr2/Smad4 axis as a ceRNA
Cited by: 10
Author(s): Jinrong Lin, Xiaobao Yang, Shaohua Liu, Zhiwen Luo, Jiwu Chen, Yaying Sun, Zheci Ding, Jiwu Chen
Software Mentions: 1
Published: over 3 years ago

10.1063/1.5060960

An efficient strategy to estimate thermodynamics and kinetics of G protein-coupled receptor activation using metadynamics and maximum caliber
Cited by: 30
Author(s): Derya Meral, Davide Provasi, Marta Filizola
Software Mentions: 1
Published: almost 6 years ago

10.1186/1758-2946-1-7

Large scale study of multiple-molecule queries
Cited by: 22
Author(s): Ramzi Nasr, S. Joshua Swamidass, Pierre Baldi
Software Mentions: 1
Published: over 15 years ago

10.4172/2375-4494.1000328

Maturation of Brain Regions Related to the Default Mode Network during Adolescence Facilitates Narrative Comprehension
Cited by: 2
Author(s): Tzipi Horowitz‐Kraus, Rola Farah, Ardag Hajinazarian, Kenneth P. Eaton, Amirtham Rajagopal, Vincent J. Schmithorst, Mekibib Altaye, Jennifer Vannest, Scott K. Holland
Software Mentions: 1
Published: almost 8 years ago

10.1002/jcla.23743

Serum exosomal microRNAs as predictive markers for EGFR mutations in non–small‐cell lung cancer
Cited by: 10
Author(s): Jianguo Xia, Man Luo, Lujun Dai, Liusheng Wang, Limin Wang, Jing Zhu
Software Mentions: 1
Published: over 3 years ago

10.1007/s10822-017-0021-x

Structure based classification for bile salt export pump (BSEP) inhibitors using comparative structural modeling of human BSEP
Cited by: 20
Author(s): Sankalp Jain, Melanie Grandits, Lars Richter, Gerhard Ecker
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.ppat.1006943

Evolution of echovirus 11 in a chronically infected immunodeficient patient
Cited by: 7
Author(s): Majid Laassri, Tatiana Zagorodnyaya, Sharon Hassin‐Baer, Rachel Handsher, Danit Sofer, Merav Weil, Konstantinos Karagiannis, Vahan Simonyan, Konstantin Chumakov, Lester M. Shulman
Software Mentions: 1
Published: over 6 years ago

10.1002/pd.5860

Fetal mitochondrial <scp>DNA</scp> in maternal plasma in surrogate pregnancies: Detection and topology
Cited by: 9
Author(s): L Mary-Jane, S.A. Yakovenko, Haiqiang Zhang, Suk Hang Cheng, В.П. Апрышко, Alex Zhavoronkov, Peiyong Jiang, Kelvin Chan, Rossa W.K. Chiu, Y.M. Dennis Lo
Software Mentions: 1
Published: about 4 years ago

10.1093/protein/gzw037

TetraMabs: simultaneous targeting of four oncogenic receptor tyrosine kinases for tumor growth inhibition in heterogeneous tumor cell populations
Cited by: 21
Author(s): Raffaella Castoldi, Jürgen Schanzer, Christian Panke, Ute Jucknischke, Natalie J. Neubert, Rebecca Croasdale, Werner Scheuer, Johannes Auer, Christian Klein, Gerhard Niederfellner, Sebastian Kobold, Claudio Sustmann
Software Mentions: 1
Published: about 8 years ago

10.1186/1477-5956-7-19

Classification-based comparison of pre-processing methods for interpretation of mass spectrometry generated clinical datasets
Cited by: 8
Author(s): Wouter Wegdam, Perry D. Moerland, Marrije R. Buist, Emiel Ver Loren van Themaat, Boris Bleijlevens, Huub C. J. Hoefsloot, Chris G. de Koster, Johannes M. F. G. Aerts
Software Mentions: 1
Published: almost 16 years ago

10.1186/1477-5956-10-45

A critical assessment of SELDI-TOF-MS for biomarker discovery in serum and tissue of patients with an ovarian mass
Cited by: 17
Author(s): Wouter Wegdam, Perry D. Moerland, Daniëlle Meijer, Shreyas M. de Jong, Huub C. J. Hoefsloot, Gemma G. Kenter, Marrije R. Buist, Johannes M. F. G. Aerts
Software Mentions: 1
Published: almost 13 years ago

10.1186/1477-5956-12-14

Metabolic labeling with stable isotope nitrogen (15N) to follow amino acid and protein turnover of three plastid proteins in Chlamydomonas reinhardtii
Cited by: 10
Author(s): Marie-Laure Sauer, Bing Xu, Fedora Sutton
Software Mentions: 1
Published: over 10 years ago

10.3390/proteomes9020017

Histone Sample Preparation for Bottom-Up Mass Spectrometry: A Roadmap to Informed Decisions
Cited by: 5
Author(s): Simon Daled, Sander Willems, Bart Van Puyvelde, Laura Corveleyn, Sigrid Verhelst, Laura De Clerck, Dieter Deforce, Maarten Dhaenens
Software Mentions: 1
Published: over 3 years ago

10.1007/s00213-016-4506-4

GABAA receptor occupancy by subtype selective GABAAα2,3 modulators: PET studies in humans
Cited by: 20
Author(s): Aurelija Jučaitė, Zsolt Cselényi, Jaakko Lappalainen, Dennis J. McCarthy, Chi-Ming Lee, Sigrid Nyberg, Katarina Varnäs, Per Stenkrona, Christer Halldin, A.J. Cross, Lars Farde
Software Mentions: 1
Published: almost 8 years ago

10.1098/rsos.172197

The leading-edge vortex on a rotating wing changes markedly beyond a certain central body size
Cited by: 14
Author(s): Shantanu S. Bhat, Jisheng Zhao, John Sheridan, Kerry Hourigan, Mark C. Thompson
Software Mentions: 1
Published: over 6 years ago

10.1098/rsos.190219

Identification of AtHsp90.6 involved in early embryogenesis and its structure prediction by molecular dynamics simulations
Cited by: 9
Author(s): An Luo, Xinbo Li, Xuecheng Zhang, Huadong Zhan, Hao Du, Yubo Zhang, Xiongbo Peng
Software Mentions: 1
Published: over 5 years ago

10.1186/s13014-019-1348-3

Radiation treatment planning with embedded dose escalation
Cited by: 2
Author(s): William T. Hrinivich, Todd McNutt, Jeffrey Meyer
Software Mentions: 1
Published: over 5 years ago

10.1186/s13014-019-1436-4

A novel approach to Verify air gap and SSD for proton radiotherapy using surface imaging
Cited by: 4
Author(s): Xiao Wang, Chi Ma, Rihan Davis, Rahul R. Parikh, Salma K. Jabbour, Bruce G. Haffty, Ning J. Yue, Ke Nie, Y. Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1186/1465-9921-7-145

Following damage, the majority of bone marrow-derived airway cells express an epithelial marker
Cited by: 27
Author(s): Heather MacPherson, Pamela Alexander Keir, Carol J Edwards, Shaun Webb, Julia R. Dorin
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12284-016-0106-5

Updated Rice Kinase Database RKD 2.0: enabling transcriptome and functional analysis of rice kinase genes
Cited by: 19
Author(s): Anil Kumar Nalini Chandran, Yo-Han Yoo, Peijian Cao, Rita Sharma, Manoj K. Sharma, Christopher Dardick, Pamela C. Ronald, Ki‐Hong Jung
Software Mentions: 1
Published: over 8 years ago

10.1155/2013/365723

Rapid Screening of Novel Agents for Combination Therapy in Sarcomas
Cited by: 11
Author(s): Christopher L. Cubitt, Jiliana Menth, Jana L. Dawson, Gary V. Martinez, Parastou Foroutan, David L. Morse, Marilyn M. Bui, G. Douglas Letson, Daniel M. Sullivan, Damon R. Reed
Software Mentions: 1
Published: almost 12 years ago

10.1126/sciadv.aaz0183

Ancient genomes reveal complex patterns of population movement, interaction, and replacement in sub-Saharan Africa
Cited by: 49
Author(s): Ke Wang, Steven T. Goldstein, Madeleine Bleasdale, Bernard-Olivier Clist, Koen Bostoen, Paul Bakwa-Lufu, Laura T. Buck, Alison Crowther, Alioune Dème, Roderick J. McIntosh, Julio Mercader, Christine Ogola, Robert C. Power, Elizabeth A. Sawchuk, Peter Robertshaw, Edwin Ν. Wilmsen, Michael D. Petraglia, Emmanuel Ndiema, Fredrick Kyalo Manthi, Johannes Krause, Patrick Roberts, Nicole Boivin, Stephan Schiffels
Software Mentions: 1
Published: over 4 years ago

10.1038/sdata.2018.106

Pharmacological and genomic profiling of neurofibromatosis type 1 plexiform neurofibroma-derived schwann cells
Cited by: 19
Author(s): Marc Ferrer, Sara J.C. Gosline, Marigo Stathis, Xiaohu Zhang, Xindi Guo, Rajarshi Guha, Dannielle A. Ryman, Margaret R. Wallace, Laura Kasch-Semenza, Haiping Hao, Roxann Ingersoll, David Mohr, Craig J. Thomas, Sharad K. Verma, Jaishri O. Blakeley
Software Mentions: 1
Published: over 6 years ago

10.1038/srep08829

Whole exome sequencing reveals recurrent mutations in BRCA2 and FAT genes in acinar cell carcinomas of the pancreas
Cited by: 70
Author(s): Toru Furukawa, Hitomi Sakamoto, Shoko Takeuchi, Mitra Ameri, Yuko Kuboki, Toshiyuki Yamamoto, Takashi Hatori, Masakazu Yamamoto, Masanori Sugiyama, Nobuyuki Ohike, Hiroshi Yamaguchi, Michio Shimizu, Noriyuki Shibata, Kyoko Shimizu, Keiko Shiratori
Software Mentions: 1
Published: over 9 years ago

10.1038/srep10806

Whole genome methylation array reveals the down-regulation of IGFBP6 and SATB2 by HIV-1
Cited by: 21
Author(s): Yinfeng Zhang, Sai Kam Li, Kevin Yi Yang, Minghua Liu, Nelson Lee, Xian Tang, Hui Wang, Li Liu, Zhiwei Chen, Chiyu Zhang, Jianhua Wang, Stephen Kwok‐Wing Tsui
Software Mentions: 1
Published: over 9 years ago

10.1038/srep13991

Multiplexed 3D FRET imaging in deep tissue of live embryos
Cited by: 20
Author(s): Ming Zhao, Xiaoyang Wan, Yu Liu, Weibin Zhou, Leilei Peng
Software Mentions: 1
Published: about 9 years ago

10.1038/srep15686

Discovery of Small Molecules that Inhibit the Disordered Protein, p27Kip1
Cited by: 68
Author(s): Luigi I. Iconaru, David Ban, Kavitha Bharatham, Arvind Ramanathan, Weixing Zhang, Anang A. Shelat, Jian Zuo, Richard W. Kriwacki
Software Mentions: 1
Published: about 9 years ago

10.1038/srep19016

Rsite2: an efficient computational method to predict the functional sites of noncoding RNAs
Cited by: 9
Author(s): Pan Zeng, Qinghua Cui
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep18932

Whole mitochondrial DNA sequencing in Alpine populations and the genetic history of the Neolithic Tyrolean Iceman
Cited by: 18
Author(s): Valentina Coia, Giovanna Cipollini, Paolo Anagnostou, Frank Maixner, Cinzia Battaggia, Francesca Brisighelli, Alberto Gómez‐Carballa, Giovanni Destro Bisol, Antonio Salas, Albert Zink
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep27780

The structural alteration of gut microbiota in low-birth-weight mice undergoing accelerated postnatal growth
Cited by: 20
Author(s): Jingjing Wang, Huang Tang, Xiaoxin Wang, Xu Zhang, Chenhong Zhang, Menghui Zhang, Yuwu Zhao, Liping Zhao, Jian Shen
Software Mentions: 1
Published: over 8 years ago

10.1038/srep28308

Molecular classification based on apomorphic amino acids (Arthropoda, Hexapoda): Integrative taxonomy in the era of phylogenomics
Cited by: 4
Author(s): Wu Haoyang, Yanhui Wang, Qiang Xie, Yongjian Ke, Wenjun Bu
Software Mentions: 1
Published: over 8 years ago

10.1038/srep28506

Identification of a 5-Methylcytosine Site that may Regulate C/EBPβ Binding and Determine Tissue-Specific Expression of the BPI Gene in Piglets
Cited by: 11
Author(s): Li Sun, Jing Wang, Xuemei Yin, Shengyuan Sun, Zi Chen, Guoqiang Zhu, Shenglong Wu, Wenbin Bao
Software Mentions: 1
Published: over 8 years ago

10.1038/srep30531

Evolutionary prediction of medicinal properties in the genus Euphorbia L.
Cited by: 43
Author(s): Madeleine Ernst, C. Haris Saslis‐Lagoudakis, Olwen M. Grace, Niclas Nilsson, Henrik Toft Simonsen, James W. Horn, Nina Rønsted
Software Mentions: 1
Published: over 8 years ago

10.1038/srep18234

Comparative genomics Lactobacillus reuteri from sourdough reveals adaptation of an intestinal symbiont to food fermentations
Cited by: 53
Author(s): Jinshui Zheng, Xin Zhao, Xiaoxi B. Lin, Michael G. Gänzle
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep34078

Global Phosphoproteomic Analysis Reveals the Involvement of Phosphorylation in Aflatoxins Biosynthesis in the Pathogenic Fungus Aspergillus flavus
Cited by: 29
Author(s): Silin Ren, Mingkun Yang, Lupeng Yu, Feng Zhang, Zhuo Chen, Jia Zhang, Yang Guang, Yuewei Yue, Siting Li, Feng Ge, Shihua Wang
Software Mentions: 1
Published: about 8 years ago

10.1038/srep35520

Genome-wide analysis of alternative splicing during human heart development
Cited by: 27
Author(s): He Wang, Yanmei Chen, Xinzhong Li, Guojun Chen, Lintao Zhong, Gangbing Chen, Yulin Liao, Wangjun Liao, Jianping Bin
Software Mentions: 1
Published: about 8 years ago

10.1038/srep38774

A Novel Method for Estimating Myocardial Strain: Assessment of Deformation Tracking Against Reference Magnetic Resonance Methods in Healthy Volunteers
Cited by: 25
Author(s): Kenneth Mangion, Hao Gao, Christie McComb, David Carrick, Guillaume Clerfond, Xiaodong Zhong, Xiaoyu Luo, Caroline Haig, Colin Berry
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep40771

Dynamic modeling of uteroplacental blood flow in IUGR indicates vortices and elevated pressure in the intervillous space – a pilot study
Cited by: 35
Author(s): Christian Roth, Eva Haeussner, Tanja Ruebelmann, Franz Koch, Christoph Schmitz, Hans-Georg Frank, Wolfgang A. Wall
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep42100

Transcriptome profiling of Galaxea fascicularis and its endosymbiont Symbiodinium reveals chronic eutrophication tolerance pathways and metabolic mutualism between partners
Cited by: 25
Author(s): Zhenping Lin, Mingliang Chen, Dong Xu, Xinqing Zheng, Haining Huang, Xun Xu, Jianming Chen
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep41908

Local entrainment of oscillatory activity induced by direct brain stimulation in humans
Cited by: 23
Author(s): Julià L. Amengual, Marine Vernet, Claude Adam, Antoni Valero‐Cabré
Software Mentions: 1
Published: over 7 years ago

10.1038/srep44667

Maternally expressed NLRP2 links the subcortical maternal complex (SCMC) to fertility, embryogenesis and epigenetic reprogramming
Cited by: 59
Author(s): Sangeetha Mahadevan, Varsha Sathappan, Budi Utama, Isabel Lorenzo, K. Kaskar, Ignatia B. Van den Veyver
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-04391-4

Microsaccades are sensitive to word structure: A novel approach to study language processing
Cited by: 30
Author(s): Maya Yablonski, Uri Polat, Yoram Bonneh, Michal Ben-Shachar
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-04979-w

Probing the missing mature β-cell proteomic landscape in differentiating patient iPSC-derived cells
Cited by: 42
Author(s): Heidrun Vethe, Yngvild Bjørlykke, Luiza Ghila, João A. Paulo, Hanne Scholz, Steven P. Gygi, Simona Chera, Helge Ræder
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-07043-9

Lumican delays melanoma growth in mice and drives tumor molecular assembly as well as response to matrix-targeted TAX2 therapeutic peptide
Cited by: 24
Author(s): Albin Jeanne, Valérie Untereiner, Corinne Perreau, Isabelle Proult, Cyril Gobinet, Camille Boulagnon‐Rombi, Christine Terryn, Laurent Martiny, Stéphane Brézillon, Stéphane Dedieu
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-10952-4

FunctionAnnotator, a versatile and efficient web tool for non-model organism annotation
Cited by: 29
Author(s): Ting-Wen Chen, Ruei Chi Gan, Yi Fang, Kun-Yi Chien, Wei Liao, Chia Chun Chen, Timothy Wu, Ian Yi‐Feng Chang, Chi Yang, Po-Jung Huang, Yuan Ming Yeh, Cheng Hsun Chiu, Tzu Wen Huang, Petrus Tang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-11384-w

Virome analysis for identification of novel mammalian viruses in bats from Southeast China
Cited by: 49
Author(s): Dan Hu, Chen Zhu, Yi Wang, Lele Ai, Lu Yang, Fuqiang Ye, Chenxi Ding, Jiafeng Chen, Bingfang He, Jingyuan Zhu, Hui Qian, Wei Xü, Youjun Feng, Weilong Tan, Changjun Wang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-12616-9

Sequence composition predicts immunoglobulin superfamily members that could share the intrinsically disordered properties of antibody CH1 domains
Cited by: 7
Author(s): Max Hebditch, Robin Curtis, Jim Warwicker
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-12858-7

Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes
Cited by: 93
Author(s): Mehdi Mirzaei, Veer Bala Gupta, Joel M. Chick, Todd M. Greco, Yunqi Wu, Nitin Chitranshi, Roshana Vander Wall, Eugene Hone, Lei Deng, Yogita Dheer, Mojdeh Abbasi, Mahdieh Rezaeian, Nady Braidy, Yuyi You, Ghasem Hosseini Salekdeh, Paul A. Haynes, Mark P. Molloy, Ralph N. Martins, Ileana M. Cristea, Steven P. Gygi, Stuart L. Graham, Vivek Kumar Gupta
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-16271-y

Whole Y-chromosome sequences reveal an extremely recent origin of the most common North African paternal lineage E-M183 (M81)
Cited by: 19
Author(s): Neus Solé-Morata, Carla García-Fernández, Вадим Урасин, Asmahan Bekada, Κarima Fadhlaoui-Zid, Pierre Zalloua, David Comas, Francesc Calafell
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-25463-z

Complete mitochondrial and rDNA complex sequences of important vector species of Biomphalaria, obligatory hosts of the human-infecting blood fluke, Schistosoma mansoni
Cited by: 23
Author(s): Si-Ming Zhang, Lijing Bu, Martina R. Laidemitt, Lijun Lu, Martin W. Mutuku, Gerald M. Mkoji, Eric S. Loker
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-30266-3

Capacity for instantaneous catabolism of preferred and non-preferred carbon sources in Escherichia coli and Bacillus subtilis
Cited by: 24
Author(s): Marieke F. Buffing, Hannes Link, Dimitris Christodoulou, Uwe Sauer
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-30152-y

Extensive genomic diversity among Mycobacterium marinum strains revealed by whole genome sequencing
Cited by: 19
Author(s): Sarbashis Das, B. M. Fredrik Pettersson, Phani Rama Krishna Behra, Amrita Mallick, Martin N. Cheramie, Malavika Ramesh, Lisa Shirreff, Tanner DuCote, Santanu Dasgupta, Don G. Ennis, Leif A. Kirsebom
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-30257-4

Cooperativity in Plant Plasma Membrane Intrinsic Proteins (PIPs): Mechanism of Increased Water Transport in Maize PIP1 Channels in Hetero-tetramers
Cited by: 18
Author(s): Manu Vajpai, M. K. Mukherjee, Ramasubbu Sankararamakrishnan
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-31281-0

A catalogue of somatic NRF2 gain-of-function mutations in cancer
Cited by: 85
Author(s): Michael Kerins, Aikseng Ooi
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-32457-4

Types of naming errors in chronic post-stroke aphasia are dissociated by dual stream axonal loss
Cited by: 29
Author(s): Emilie T. McKinnon, Julius Fridriksson, Alexandra Basilakos, Gregory Hickok, Argye E. Hillis, Maria Vittoria Spampinato, Ezequiel Gleichgerrcht, Chris Rorden, Jens Højgaard Jensen, Joseph A. Helpern, Leonardo Bonilha
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-35389-1

Peculiar features of the plastids of the colourless alga Euglena longa and photosynthetic euglenophytes unveiled by transcriptome analyses
Cited by: 34
Author(s): Kristína Záhonová, Zoltán Füssy, Erik Birčák, Anna M. G. Novák Vanclová, Vladimír Klimeš, Matej Vesteg, Juraj Krajčovič, Miroslav Oborník, Marek Eliáš
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-39889-6

Familiarity revealed by involuntary eye movements on the fringe of awareness
Cited by: 15
Author(s): Gal Rosenzweig, Yoram Bonneh
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-39953-1

The traumatic brain injury mitigation effects of a new viscoelastic add-on liner
Cited by: 24
Author(s): Petros Siegkas, David J. Sharp, Mazdak Ghajari
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-45010-8

Energetic, Structural and Dynamic Properties of Nucleobase-Urea Interactions that Aid in Urea Assisted RNA Unfolding
Cited by: 8
Author(s): Tanashree Jaganade, Aditya Chattopadhyay, Nila M. Pazhayam, U. Deva Priyakumar
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48379-8

No single, stable 3D representation can explain pointing biases in a spatial updating task
Cited by: 7
Author(s): Jenny Vuong, Andrew Fitzgibbon, Andrew Glennerster
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-49046-8

Omnidirectional Light Capture by Solar Cells Mimicking the Structures of the Epidermal cells of Leaves
Cited by: 4
Author(s): Min Ju Yun, Yeon Hyang Sim, I. Seung, Dong Yoon Lee
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-55479-y

Finnish Parkinson’s disease study integrating protein-protein interaction network data with exome sequencing analysis
Cited by: 6
Author(s): Ari Siitonen, Laura Kytövuori, Mike A. Nalls, Raphael Gibbs, Dena G. Hernandez, Pauli Ylikotila, Markku Peltonen, Andrew B. Singleton, Kari Majamaa
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-57684-6

Spatiotemporal properties of whisker-evoked tactile responses in the mouse secondary somatosensory cortex
Cited by: 15
Author(s): Sophie Hubatz, Guillaume Hucher, Daniel E. Shulz, Isabelle Férézou
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-61073-4

Oxytocin Receptors Regulate Social Preference in Zebrafish
Cited by: 25
Author(s): Jenny Landin, Daniel Hovey, Bo Xu, David Lagman, Anna Zettergren, Dan Larhammar, Petronella Kettunen, Lars Westberg
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-64967-5

Low-Cost iPhone-Assisted Processing to Obtain Radiotherapy Bolus Using Optical Surface Reconstruction and 3D-Printing
Cited by: 5
Author(s): De-hua Kang, Bin Wang, Yinglin Peng, Xiaowei Liu, Xiao Wu Deng
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-65476-1

Synergism between the Black Queen effect and the proteomic constraint on genome size reduction in the photosynthetic picoeukaryotes
Cited by: 2
Author(s): Dieunel Derilus, Mehboob‐ur Rahman, Fernando L. Piñero, Steven E. Massey
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66871-4

High Adsorption of Benzoic Acid on Single Walled Carbon Nanotube Bundles
Cited by: 7
Author(s): Shifan Li, Thushani De Silva, Iskinder Arsano, Dinuka Gallaba, Robinson Karunanithy, Milinda Wasala, Xianfeng Zhang, P. Sivakumar, Aldo Migone, Mesfin Tsige, Xingmao Ma, Saikat Talapatra
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-66978-8

A novel pathogenic missense ADAMTS17 variant that impairs secretion causes Weill-Marchesani Syndrome with variably dysmorphic hand features
Cited by: 12
Author(s): Daniel R. Evans, Jane S. Green, Somayyeh Fahiminiya, Jacek Majewski, Bridget A. Fernandez, Matthew A. Deardorff, Gordon J. Johnson, James Whelan, Dirk Hubmacher, Suneel S. Apte, Michael O. Woods
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-70794-5

Long-read assays shed new light on the transcriptome complexity of a viral pathogen
Cited by: 13
Author(s): Dóra Tombácz, István Prazsák, Zsolt Csabai, Norbert Moldován, Béla Dénes, M Snyder, Zsolt Boldogkői
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-71487-9

Concealed information revealed by involuntary eye movements on the fringe of awareness in a mock terror experiment
Cited by: 9
Author(s): Gal Rosenzweig, Yoram Bonneh
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-73807-5

A de novo frameshift mutation in ZEB2 causes polledness, abnormal skull shape, small body stature and subfertility in Fleckvieh cattle
Cited by: 3
Author(s): Lilian Johanna Gehrke, Maulik Upadhyay, Kristin Heidrich, Elisabeth Kunz, Daniela Klaus-Halla, Frank Weber, Holm Zerbe, Doris Seichter, Alexander Graf, Stefan Krebs, Helmut Blum, Aurélien Capitan, Georg Thaller, Ivica Međugorac
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-020-75036-2

An ultra-high-density protein microarray for high throughput single-tier serological detection of Lyme disease
Cited by: 4
Author(s): Vasanth Jayaraman, Karthik Krishna, Yuanyuan Yang, Karenah Rajasekaran, Yuzheng Ou, Tianhao Wang, Kang Bei, Hari Krishnan Krishnamurthy, John J. Rajasekaran, J. Alex, Daniel A. Green
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-021-82214-3

Classification of paediatric brain tumours by diffusion weighted imaging and machine learning
Cited by: 21
Author(s): Ján Novák, Niloufar Zarinabad, Heather Rose, Theodoros N. Arvanitis, Lesley MacPherson, Benjamin Pinkey, Adam Oates, Patrick W. Hales, Richard G. Grundy, Dorothee P. Auer, Daniel Rodriguez Gutierrez, Tim Jaspan, Shivaram Avula, Laurence Abernethy, Rajvir Kaur, Darren Hargrave, Dipayan Mitra, Simon Bailey, Nigel P. Davies, Christopher A. Clark, Andrew Peet
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41598-021-85282-7

Bacterial profiling of Haemonchus contortus gut microbiome infecting Dohne Merino sheep in South Africa
Cited by: 11
Author(s): Thendo Mafuna, P. Soma, Ana M. Tsotetsi-Khambule, Charles A. Hefer, Farai C. Muchadeyi, Oriel Thekisoe, Rian Pierneef
Software Mentions: 1
Published: over 3 years ago

Projects: pypi: house

Papers Mentioning house 960