Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: heatmap

https://packages.ecosyste.ms/registries/pypi.org/packages/heatmap

Module to create heatmaps
2 versions
Latest release: almost 12 years ago
414 downloads last month

Papers Mentioning heatmap 285

10.3389/fcvm.2020.622236
Characteristics of Blood Metabolic Profile in Coronary Heart Disease, Dilated Cardiomyopathy and Valvular Heart Disease Induced Heart Failure
Cited by: 9
Author(s): Chang Liu, Ruihua Li, Yang Liu, Zhenguo Li, Yanan Sun, Peiyuan Yin, Rihong Huang
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0131292
An Insight into the Sialome of the Lone Star Tick, Amblyomma americanum, with a Glimpse on Its Time Dependent Gene Expression
Cited by: 95
Author(s): Shahid Karim, José M. C. Ribeiro
Software Mentions: 3
Published: over 9 years ago
10.7554/eLife.48767
Induction of Sertoli-like cells from human fibroblasts by NR5A1 and GATA4
Cited by: 35
Author(s): Jianlin Liang, Nan Wang, Jing He, Jian Du, Yin Guo, Lin Li, Wenbo Wu, Chencheng Yao, Zheng Li, Kehkooi Kee
Software Mentions: 3
Published: about 5 years ago
10.7554/eLife.51406
Proteome profile of peripheral myelin in healthy mice and in a neuropathy model
Cited by: 52
Author(s): Sophie B Siems, Olaf Jahn, Maria A Eichel, Nirmal Kannaiyan, Lai Man Natalie Wu, Diane L. Sherman, Kathrin Kusch, Dörte Hesse, Ramona B. Jung, Robert Fledrich, Michael W. Sereda, Moritz J. Rossner, Peter Brophy, Hauke Werner
Software Mentions: 3
Published: over 4 years ago
10.3390/toxins12040248
Phylogenomic Analysis of Secondary Metabolism in the Toxic Cyanobacterial Genera Anabaena, Dolichospermum and Aphanizomenon
Cited by: 28
Author(s): Julia Österholm, Rafael Vicentini Popin, David P. Fewer, Kaarina Sivonen
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0200818
Heterogeneity of circulating CD8 T-cells specific to islet, neo-antigen and virus in patients with type 1 diabetes mellitus
Cited by: 26
Author(s): Sandra Laban, Jessica S. Suwandi, Vincent van Unen, J. Pool, Joris Wesselius, Thomas Höllt, Nicola Pezzotti, Anna Vilanova, Boudewijn P. F. Lelieveldt, Bart O. Roep
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-020-75438-2
Gene expression of the heat stress response in bovine peripheral white blood cells and milk somatic cells in vivo
Cited by: 30
Author(s): Josie B. Garner, Amanda J. Chamberlain, Christy Vander Jagt, Thuy Thi Thu Nguyen, Brett Mason, L. C. Marett, Brian J Leury, William J. Wales, Ben J. Hayes
Software Mentions: 3
Published: about 4 years ago
10.18632/aging.101578
High expression of the breast cancer susceptibility gene BRCA1 in long-lived termite kings
Cited by: 9
Author(s): Eisuke Tasaki, Yuki Mitaka, Tomonari Nozaki, Keiko Kobayashi, Kenji Matsuura, Yoshihito Iuchi
Software Mentions: 3
Published: about 6 years ago
10.1038/s41598-020-73814-6
Transcriptome sequencing and histology reveal dosage compensation in the liver of triploid pre-smolt Atlantic salmon
Cited by: 5
Author(s): Derrick Kwame Odei, Ørjan Hagen, Stefano Peruzzi, Inger‐Britt Falk‐Petersen, Jorge Manuel de Oliveira Fernandes
Software Mentions: 3
Published: about 4 years ago
10.3390/life11060554
Protein Secondary Structure Affects Glycan Clustering in Native Mass Spectrometry
Cited by: 7
Author(s): Hao Yan, Julia Lockhauserbäumer, Gergő Péter Szekeres, Álvaro Mallagaray, Robert Creutznacher, Stefan Taube, Thomas Peters, Kevin Pagel, Charlotte Uetrecht
Software Mentions: 3
Published: over 3 years ago
10.1186/1471-2164-13-83
Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing
Cited by: 83
Author(s): Pablo Peláez, Sebastián A. Trejo, Luis P. Íñiguez, Georgina Estrada-Navarrete, Alejandra A. Covarrubias, José Luis Reyes, Federico Sánchez
Software Mentions: 3
Published: over 12 years ago
10.1038/s41598-020-69422-z
Significant correlation between plasma proteome profile and pain intensity, sensitivity, and psychological distress in women with fibromyalgia
Cited by: 26
Author(s): Karin Wåhlén, Malin Ernberg, Eva Kosek, Kaisa Mannerkorpi, Björn Gerdle, Bijar Ghafouri
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0140964
Influence of Development and Dietary Phospholipid Content and Composition on Intestinal Transcriptome of Atlantic Salmon (Salmo salar)
Cited by: 30
Author(s): Christian De Santis, John F. Taylor, Laura Martínez-Rubio, Sebastián Boltaña, Douglas R. Tocher
Software Mentions: 3
Published: about 9 years ago
10.1155/2019/9506461
A Potential Prognostic Gene Signature for Predicting Survival for Glioblastoma Patients
Cited by: 14
Author(s): Ziming Hou, Jun Yang, Hao Wang, Dongyuan Liu, Hongbing Zhang
Software Mentions: 3
Published: over 5 years ago
10.1186/s12894-021-00843-2
EPDR1 is related to stages and metastasize in bladder cancer and can be used as a prognostic biomarker
Cited by: 8
Author(s): Yue Yang, Hanchao Zhang, Zhengdao Liu, Faliang Zhao, Guobiao Liang
Software Mentions: 3
Published: over 3 years ago
10.3389/fcell.2021.694769
Comparison of Genome-Wide DNA Methylation Profiles of Human Fetal Tissues Conceived by in vitro Fertilization and Natural Conception
Cited by: 4
Author(s): Ye Liu, Xinzhu Li, Songchang Chen, Li Wang, Ya‐Jing Tan, Xiaocui Li, Lin Tang, Junyu Zhang, Dandan Wu, Yanting Wu, Xinmei Liu, Yimin Zhu, Jian‐Zhong Sheng, Jiexue Pan, Li Jin, He‐Feng Huang
Software Mentions: 3
Published: over 3 years ago
10.3390/genes12020186
VIRMOTIF: A User-Friendly Tool for Viral Sequence Analysis
Cited by: 17
Author(s): Pedram Rajaei, Khadijeh Jahanian, Amin Beheshti, Shahab S. Band, Abdollah Dehzangi, Hamid Alinejad‐Rokny
Software Mentions: 3
Published: almost 4 years ago
10.1093/jxb/ert234
Nitrogen metabolism of two contrasting poplar species during acclimation to limiting nitrogen availability
Cited by: 172
Author(s): Jie Luo, Hong Li, Tong‐Xian Liu, Andrea Polle, Changhui Peng, Zhibin Luo
Software Mentions: 3
Published: over 11 years ago
10.3390/ijms21238934
Identification and Characterization of PLATZ Transcription Factors in Wheat
Cited by: 20
Author(s): Yuxin Fu, Mengping Cheng, Maolian Li, Xiaojiang Guo, Yongrui Wu, Jirui Wang
Software Mentions: 3
Published: almost 4 years ago
10.1038/s41419-021-03955-7
LncRNA RCAT1 promotes tumor progression and metastasis via miR-214-5p/E2F2 axis in renal cell carcinoma
Cited by: 22
Author(s): Renbo Guo, Benkui Zou, Yiran Liang, Jiasheng Bian, Jian Xu, Qian Zhou, Chao Zhang, Tao Chen, Mei Yang, Huansheng Wang, Fajun Pei, Zhonghua Xu
Software Mentions: 3
Published: over 3 years ago
10.3389/fimmu.2019.01928
The Transcriptional and Protein Profile From Human Infected Neuroprogenitor Cells Is Strongly Correlated to Zika Virus Microcephaly Cytokines Phenotype Evidencing a Persistent Inflammation in the CNS
Cited by: 44
Author(s): Morganna Costa Lima, Leila Rodrigues de Mendonça, Antônio Mauro Rezende, Raquel Medialdea-Carrera, Conceição Elidianne Aníbal-Silva, Matthew Demers, Leonardo D’Aiuto, Joel Wood, Kodavali V. Chowdari, Michael J. Griffiths, Antonio R. Lucena-Araújo, Manoel Barral‐Netto, Elisa de Almeida Neves Azevedo, Renan Willian Alves, Pablo Cantalice Santos Farias, Ernesto T. A. Marques, Priscila M. S. Castanha, Claire L. Donald, Alain Kohl, Vishwajit L. Nimgaonkar, Rafael Freitas Oliveira Franca
Software Mentions: 3
Published: over 5 years ago
10.3389/fmicb.2017.02465
Microbial Communities Shaped by Treatment Processes in a Drinking Water Treatment Plant and Their Contribution and Threat to Drinking Water Safety
Cited by: 64
Author(s): Qi Li, Shuili Yu, Lei Li, Guicai Liu, Zhengyang Gu, Minmin Liu, Zhiyuan Liu, Yubing Ye, Qing Xia, Lei Ren
Software Mentions: 3
Published: almost 7 years ago
10.3389/fgene.2021.650213
Predicting the Key Genes Involved in Aortic Valve Calcification Through Integrated Bioinformatics Analysis
Cited by: 8
Author(s): Dinghui Wang, Tianhua Xiong, Wenlong Yu, Bin Liu, Jing Wang, Kaihu Xiao, Sheng Qiang
Software Mentions: 3
Published: over 3 years ago
10.3390/cells9081845
Cystic Fibrosis Defective Response to Infection Involves Autophagy and Lipid Metabolism
Cited by: 8
Author(s): Alessandra Mingione, Emerenziana Ottaviano, Matteo Barcella, Ivan Merelli, Lorenzo Rosso, Tatiana Armeni, N. Cirilli, Riccardo Ghidoni, Elisa Borghi, Paola Signorelli
Software Mentions: 3
Published: over 4 years ago
10.1186/s13059-016-0937-9
In silico lineage tracing through single cell transcriptomics identifies a neural stem cell population in planarians
Cited by: 76
Author(s): Alyssa M. Molinaro, Bret J. Pearson
Software Mentions: 3
Published: over 8 years ago
10.1186/s13148-019-0760-8
The phenotypic variations of multi-locus imprinting disturbances associated with maternal-effect variants of NLRP5 range from overt imprinting disorder to apparently healthy phenotype
Cited by: 19
Author(s): Ángela Sparago, Ankit Verma, Maria Grazia Patricelli, Laura Pignata, Silvia Russo, Luciano Calzari, Naomi De Francesco, Rosita Del Prete, Orazio Palumbo, Massimo Carella, Deborah J G Mackay, Faisal I. Rezwan, Claudia Angelini, Flavia Cerrato, Maria Vittoria Cubellis, Andrea Riccio
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41598-017-15963-9
Transcriptomics reveals multiple resistance mechanisms against cotton leaf curl disease in a naturally immune cotton species, Gossypium arboreum
Cited by: 51
Author(s): Rubab Zahra Naqvi, Syed Shan-e-Ali Zaidi, Khalid Pervaiz Akhtar, Susan R. Strickler, Melkamu Woldemariam, Bharat Mishra, M. Shahid Mukhtar, Brian E. Scheffler, Jodi A. Scheffler, Georg Jander, Lukas A. Mueller, Muhammad Asif, Shahid Mansoor
Software Mentions: 3
Published: about 7 years ago
10.1038/s42003-021-01925-5
Inhibiting LXRα phosphorylation in hematopoietic cells reduces inflammation and attenuates atherosclerosis and obesity in mice
Cited by: 2
Author(s): Maud Voisin, Elina Shrestha, Claire Rollet, Cyrus Nikain, Tatjana Josefs, Mélanie Mahé, Tessa Barrett, Hye Rim Chang, Rachel Ruoff, Jeffrey A. Schneider, Michela L. Garabedian, Chris Zoumadakis, Chi Sun Yun, Bara A. Badwan, Emily J. Brown, Adam C. Mar, Robert J. Schneider, Ira J. Goldberg, Inés Pineda-Torra, Edward A. Fisher
Software Mentions: 3
Published: over 3 years ago
10.1186/s12870-019-1953-1
Genome-wide identification, structure characterization, and expression pattern profiling of aquaporin gene family in cucumber
Cited by: 67
Author(s): Yong‐Guan Zhu, Lei Yang, Ning Liu, Jie Yang, Xi Zhou, Yuchen Xia, Yang He, Yan He, Haijun Gong, Dongfang Ma, Jia Yin
Software Mentions: 3
Published: over 5 years ago
10.3389/fphys.2021.658518
Mechanisms of Impaired Lung Development and Ciliation in Mannosidase-1-Alpha-2 (Man1a2) Mutants
Cited by: 2
Author(s): Mylarappa Ningappa, Morayooluwa Adenuga, Kim A. Ngo, Nada Mohamed, Tejaswini Narayanan, Krishna Prasadan, Chethan Ashokkumar, Jishnu Das, Lori Schmitt, Hannah Hartman, Anuradha Sehrawat, Cláudia Salgado, Miguel Reyes‐Múgica, George K. Gittes, Cecilia Lo, Shankar Subramaniam, Rakesh Sindhi
Software Mentions: 3
Published: over 3 years ago
10.15252/emmm.201708047
The <scp>GPR</scp> 120 agonist <scp>TUG</scp> ‐891 promotes metabolic health by stimulating mitochondrial respiration in brown fat
Cited by: 75
Author(s): Maaike Schilperoort, Anke Dam, Geerte Hoeke, Irina G. Shabalina, Anthony Okolo, Aylin Hanyaloglu, Lea Dib, Isabel M. Mol, Natarin Caengprasath, Yi‐Wah Chan, Sami Damak, Anne Reifel Miller, Tamer Coşkun, Bharat Shimpukade, Trond Ulven, Sander Kooijman, Patrick C.N. Rensen, Mark Christian
Software Mentions: 3
Published: almost 7 years ago
10.3389/fgene.2021.689801
A Prognostic Autophagy-Related Gene Pair Signature and Small-Molecule Drugs for Hepatocellular Carcinoma
Cited by: 2
Author(s): Ze-bing Song, GuoPei Zhang, Yang Yu, shaoqiang li
Software Mentions: 3
Published: over 3 years ago
10.1038/s41426-018-0187-x
Filamentation in <i>Candida auris</i>, an emerging fungal pathogen of humans: passage through the mammalian body induces a heritable phenotypic switch
Cited by: 93
Author(s): Huizhen Yue, Bing Jian, Qiushi Zheng, Yulong Zhang, Tianren Hu, Han Du, Hui Wang, Guanghua Huang
Software Mentions: 3
Published: almost 6 years ago
10.1111/acel.12707
Overexpression of PGC-1α in aging muscle enhances a subset of young-like molecular patterns
Cited by: 50
Author(s): Sofia F. Garcia, Nadee Nissanka, Edson Assunção Mareco, Susana G. Rossi, Susana Peralta, Francisca Díaz, Richard L. Rotundo, Robson Francisco Carvalho, Carlos T. Moraes
Software Mentions: 3
Published: almost 7 years ago
10.7717/peerj.10977
Comparative transcriptomic analysis reveals the cold acclimation during chilling stress in sensitive and resistant passion fruit (<i>Passiflora edulis)</i> cultivars
Cited by: 7
Author(s): Yanyan Wu, Weihua Huang, Qian Tian, Jieyun Liu, Xiuzhong Xia, Yang Xiao-ling, Haifei Mou
Software Mentions: 3
Published: over 3 years ago
10.1186/s13059-019-1877-y
Chromatin interactome mapping at 139 independent breast cancer risk signals
Cited by: 22
Author(s): Jonathan Beesley, Haran Sivakumaran, Mahdi Moradi Marjaneh, Luize Gonçalves Lima, Kristine M. Hillman, Susanne Kaufmann, Natasha Tuano, Nehal Hussein, Sunyoung Ham, Pamela Mukhopadhyay, Stephen H. Kazakoff, Jason S. Lee, Kyriaki Michailidou, Daniel R. Barnes, Antonis C. Antoniou, Laura Fachal, Alison M. Dunning, Douglas F. Easton, Nicola Waddell, Joseph Rosenbluh, Andreas Möller, Georgia Chenevix-Trench, Juliet D. French, Stacey L. Edwards
Software Mentions: 3
Published: almost 5 years ago
10.1186/s12862-017-0945-8
Microbial composition of spiny ants (Hymenoptera: Formicidae: Polyrhachis) across their geographic range
Cited by: 43
Author(s): Manuela de Oliveira Ramalho, Odair Corrêa Bueno, Corrie S. Moreau
Software Mentions: 3
Published: over 7 years ago
10.1186/s12886-020-01365-5
Identification of lncRNA–miRNA–mRNA regulatory network associated with primary open angle glaucoma
Cited by: 24
Author(s): Minwen Zhou, Bing Lu, Wei Tan, Mingshui Fu
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pntd.0008684
Expanded genome-wide comparisons give novel insights into population structure and genetic heterogeneity of Leishmania tropica complex
Cited by: 12
Author(s): Tamara Salloum, Rim Moussa, Ryan Rahy, Jospin Al Deek, Ibrahim Khalifeh, Rana El Hajj, Neil Hall, Robert P. Hirt, Sima Tokajian
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pntd.0003372
An Updated Insight into the Sialotranscriptome of Triatoma infestans: Developmental Stage and Geographic Variations
Cited by: 35
Author(s): Alexandra Schwarz, Nora Medrano-Mercado, Günter A. Schaub, Cláudio J. Struchiner, M. D. Bargues, Michael Z. Levy, José M. C. Ribeiro
Software Mentions: 3
Published: almost 10 years ago
10.1371/journal.pntd.0006410
Sialome diversity of ticks revealed by RNAseq of single tick salivary glands
Cited by: 61
Author(s): Jan Perner, Sára Kropáčková, Petr Kopáček, José M. C. Ribeiro
Software Mentions: 3
Published: over 6 years ago
10.1186/s12866-014-0279-2
Infant formula supplemented with low protein and high carbohydrate alters the intestinal microbiota in neonatal SD rats
Cited by: 31
Author(s): Wei Fan, Ye Tang, Yi Qu, Fengbo Cao, Huo Gui-cheng
Software Mentions: 3
Published: about 10 years ago
10.1155/2018/6280484
Bacterial Community of the Rice Floodwater Using Cultivation-Independent Approaches
Cited by: 13
Author(s): Michele Pittol, Erin D. Scully, Daniel N. Miller, Lisa M. Durso, Lídia Mariana Fiuza, Victor Hugo Valiati
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12864-020-07038-3
Multi-scale supervised clustering-based feature selection for tumor classification and identification of biomarkers and targets on genomic data
Cited by: 17
Author(s): Da Xu, Jialin Zhang, Hanxiao Xu, Yusen Zhang, Wei Chen, Rui Gao, Matthias Dehmer
Software Mentions: 3
Published: about 4 years ago
10.1111/os.12519
Discovery and Identification of Serum Succinyl‐Proteome for Postmenopausal Women with Osteoporosis and Osteopenia
Cited by: 1
Author(s): Lili Zhang, Chunwen Li, Kang Liu, Zhong Liu, Bo Liang, Yiran Yang, Xiaoyi Shi
Software Mentions: 3
Published: about 5 years ago
10.1371/journal.pone.0148771
Identification of Gene Modules Associated with Low Temperatures Response in Bambara Groundnut by Network-Based Analysis
Cited by: 41
Author(s): Venkata Suresh Bonthala, Katie Mayes, Joanna Moreton, Martin Blythe, Victoria Wright, Sean May, Festo Massawe, Sean Mayes, Jamie Twycross
Software Mentions: 3
Published: almost 9 years ago
10.1038/oncsis.2016.88
The role of the cancer stem cell marker CD271 in DNA damage response and drug resistance of melanoma cells
Cited by: 50
Author(s): Torben Redmer, I Walz, Bertram Klinger, Slim Khouja, Yvonne Welte, Reinhold Schäfer, Christian Regenbrecht
Software Mentions: 3
Published: almost 8 years ago
10.1371/journal.pone.0099193
Discovering Functional Modules across Diverse Maize Transcriptomes Using COB, the Co-Expression Browser
Cited by: 26
Author(s): Robert J. Schaefer, Roman Briskine, Nathan M. Springer, Chad L. Myers
Software Mentions: 3
Published: over 10 years ago
10.1371/journal.pone.0252691
Industrialization as a source of heavy metals and antibiotics which can enhance the antibiotic resistance in wastewater, sewage sludge and river water
Cited by: 42
Author(s): Jakub Hubeny, Monika Harnisz, Ewa Korzeniewska, Martyna Buta, W. Zieliński, Damian Rolbiecki, Joanna Giebułtowicz, Grzegorz Nałęcz‐Jawecki, Grażyna Płaza
Software Mentions: 3
Published: over 3 years ago
10.1038/srep33102
Pentoxifylline ameliorates non-alcoholic fatty liver disease in hyperglycaemic and dyslipidaemic mice by upregulating fatty acid β-oxidation
Cited by: 23
Author(s): Jia-Hung Ye, Jung Chao, Mau‐Song Chang, Wen-Huang Peng, Hao-Yuan Cheng, Jiunn‐Wang Liao, Li-Heng Pao
Software Mentions: 2
Published: about 8 years ago
10.1111/acel.12499
Changes in the expression of splicing factor transcripts and variations in alternative splicing are associated with lifespan in mice and humans
Cited by: 69
Author(s): Benjamin P. Lee, Luke C. Pilling, Florence Emond, Kevin Flurkey, David E. Harrison, Rong Yuan, Luanne L. Peters, George A. Kuchel, Luigi Ferrucci, David Melzer, Lorna W. Harries
Software Mentions: 2
Published: over 8 years ago
10.3390/antiox9040301
Plasma Non-Enzymatic Antioxidant Capacity (NEAC) in Relation to Dietary NEAC, Nutrient Antioxidants and Inflammation-Related Biomarkers
Cited by: 8
Author(s): Cayetano Javier Carrión-García, Eduardo Guerra‐Hernández, Belén Garcı́a-Villanova, Mauro Serafini, María José Sánchez, Pilar Amiano, Esther Molina‐Montes
Software Mentions: 2
Published: over 4 years ago
10.1186/1471-2105-15-36
uPEPperoni: An online tool for upstream open reading frame location and analysis of transcript conservation
Cited by: 30
Author(s): Adam Skarshewski, Mitchell Stanton-Cook, Thomas Huber, S. Al Mansoori, Ross Smith, Scott A. Beatson, Joseph A. Rothnagel
Software Mentions: 2
Published: almost 11 years ago
10.1186/s12864-020-07053-4
The wild strawberry kinome: identification, classification and transcript profiling of protein kinases during development and in response to gray mold infection
Cited by: 5
Author(s): Hui Liu, Wei Qü, Kaikai Zhu, Zong‐Ming Cheng
Software Mentions: 2
Published: about 4 years ago
10.1186/s12864-015-1897-2
cis-regulatory analysis of the Drosophila pdm locus reveals a diversity of neural enhancers
Cited by: 13
Author(s): Jeffrey Ross, A. Kuzin, Theodore M. Brody, Ward F. Odenwald
Software Mentions: 2
Published: about 9 years ago
10.1186/s12920-019-0502-y
LncRNA-miRNA-mRNA expression variation profile in the urine of calcium oxalate stone patients
Cited by: 16
Author(s): Xiongfa Liang, Yongchang Lai, Weizhou Wu, Dong Chen, Fangling Zhong, Jian Huang, Tao Zeng, Xiaolu Duan, Yapeng Huang, Shike Zhang, Shujue Li, Wenqi Wu
Software Mentions: 2
Published: over 5 years ago
10.1186/s12920-014-0068-7
Overexpression of miR-21-5p as a predictive marker for complete tumor regression to neoadjuvant chemoradiotherapy in rectal cancer patients
Cited by: 55
Author(s): Camila M. Lopes‐Ramos, Angelita Habr‐Gama, Bruna de Souza Quevedo, Natália M. Felício, Fabiana Bettoni, Fernanda Christtanini Koyama, Paula Fontes Asprino, Pedro A. F. Galante, Joaquim Gama-Rodrigues, Anamaria A. Camargo, Rodrigo Oliva Perez, Raphael B. Parmigiani
Software Mentions: 2
Published: almost 10 years ago
10.1186/s12870-019-2136-9
Defining the function of SUMO system in pod development and abiotic stresses in Peanut
Cited by: 11
Author(s): Yiyang Liu, Jianqing Zhu, Sheng Sun, Feng Cui, Han Yan, Zhenying Peng, Xuejie Zhang, Shubo Wan, Guowei Li
Software Mentions: 2
Published: almost 5 years ago
10.1186/s13068-019-1393-z
Kluyveromyces marxianus developing ethanol tolerance during adaptive evolution with significant improvements of multiple pathways
Cited by: 59
Author(s): Wenjuan Mo, Mengzhu Wang, Rongrong Zhan, Yao Yu, Yungang He, Hong Lü
Software Mentions: 2
Published: over 5 years ago
10.1186/s12935-019-0884-0
Identification of potential key genes and pathways predicting pathogenesis and prognosis for triple-negative breast cancer
Cited by: 26
Author(s): Xuemei Lv, Miao He, Yimeng Zhao, Liwen Zhang, Wenjing Zhu, Longyang Jiang, Yuanyuan Yan, Yue Fan, Hongfeng Zhao, Shubo Zhou, Heyao Ma, Yihua Sun, Xiang Li, Hong Xu, Minjie Wei
Software Mentions: 2
Published: over 5 years ago
10.1186/s12935-020-1128-z
Establishment and characterization of patient-derived cancer models of malignant peripheral nerve sheath tumors
Cited by: 10
Author(s): Rieko Oyama, Fusako Kito, Mami Takahashi, Emi Hattori, Rei Noguchi, Yoko Takai, Marimu Sakumoto, Zhiwei Qiao, Shunichi Toki, Michio Sugawara, Yoshikazu Tanzawa, Eisuke Kobayashi, Fumihiko Nakatani, Shintaro Iwata, Akihiko Yoshida, Akira Kawai, Tadashi Kondo
Software Mentions: 2
Published: almost 5 years ago
10.1007/s11306-019-1564-8
A large-scale analysis of targeted metabolomics data from heterogeneous biological samples provides insights into metabolite dynamics
Cited by: 47
Author(s): Ho‐Joon Lee, Daniel M. Kremer, Peter Sajjakulnukit, Li Zhang, Costas A. Lyssiotis
Software Mentions: 2
Published: over 5 years ago
10.7717/peerj.10716
Gut bacterial communities in the freshwater snail <i>Planorbella trivolvis</i> and their modification by a non-herbivorous diet
Cited by: 11
Author(s): Zongfu Hu, Qing Tong, Jie Chang, Jianhua Yu, Shuguo Li, Huaxin Niu, Dongmei Ma
Software Mentions: 2
Published: almost 4 years ago
10.3390/plants10091962
Supraoptimal Brassinosteroid Levels Inhibit Root Growth by Reducing Root Meristem and Cell Elongation in Rice
Cited by: 2
Author(s): Kewalee Jantapo, Watcharapong Wimonchaijit, Wenfei Wang, Juthamas Chaiwanon
Software Mentions: 2
Published: about 3 years ago
10.1371/journal.pcbi.1004147
Protein Domain-Level Landscape of Cancer-Type-Specific Somatic Mutations
Cited by: 59
Author(s): Fan Yang, Evangelia Petsalaki, Thomas Rolland, David E. Hill, Marc Vidal, Frederick P. Roth
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pgen.1006985
CTCF counter-regulates cardiomyocyte development and maturation programs in the embryonic heart
Cited by: 45
Author(s): Melisa Gómez-Velázquez, Claudio Badía-Careaga, Ana Victoria Lechuga‐Vieco, Rocío Nieto-Arellano, Juan J. Tena, Isabel Rollán, Alba Álvarez, Carlos Torroja, Eva F. Caceres, Anna Roy, Niels Galjart, Paul Delgado-Olguı́n, Fátima Sánchez‐Cabo, José Antonio Enrı́quez, José Luis Gómez‐Skarmeta, Miguel Manzanares
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pone.0054684
Genome-Wide Association Study on the Development of Cross-Reactive Neutralizing Antibodies in HIV-1 Infected Individuals
Cited by: 21
Author(s): Zelda Euler, Marit J. van Gils, Brigitte Boeser‐Nunnink, Hanneke Schuitemaker, Daniëlle van Manen
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0187461
Species-specific signatures of the microbiome from Camponotus and Colobopsis ants across developmental stages
Cited by: 34
Author(s): Manuela de Oliveira Ramalho, Odair Corrêa Bueno, Corrie S. Moreau
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pone.0254796
Removal of peptidoglycan and inhibition of active cellular processes leads to daptomycin tolerance in Enterococcus faecalis
Cited by: 7
Author(s): Rachel D. Johnston, Brittni M. Woodall, Johnathan Harrison, Shawn R. Campagna, Elizabeth Fozo
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0071782
Transcriptome Analysis of the Zebrafish Model of Diamond-Blackfan Anemia from RPS19 Deficiency via p53-Dependent and -Independent Pathways
Cited by: 21
Author(s): Qiong Jia, Qian Zhang, Zhaojun Zhang, Yaqin Wang, Wanguang Zhang, Yang Zhou, Yang Wan, Tao Cheng, Xiaofan Zhu, Xiangdong Fang, Weiping Yuan, Haibo Jia
Software Mentions: 2
Published: over 11 years ago
10.1371/journal.pone.0131429
Abraxane, the Nanoparticle Formulation of Paclitaxel Can Induce Drug Resistance by Up-Regulation of P-gp
Cited by: 64
Author(s): Minzhi Zhao, Chunni Lei, Yadong Yang, Xiangli Bu, Hongyu Ma, Guoqing He, Juan Liu, Xiangdong Fang, Zhiyuan Hu, Qiaojun Fang
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0010849
Heterozygosity for Pten Promotes Tumorigenesis in a Mouse Model of Medulloblastoma
Cited by: 45
Author(s): Robert C. Castellino, Benjamin G. Barwick, Matthew Schniederjan, Meghan C. Buss, Oren J. Becher, Dolores Hambardzumyan, Tobey J. MacDonald, Daniel J. Brat, Donald L. Durden
Software Mentions: 2
Published: over 14 years ago
10.1371/journal.pone.0222755
Evaluation of a global spring wheat panel for stripe rust: Resistance loci validation and novel resources identification
Cited by: 20
Author(s): Ibrahim S. Elbasyoni, Walid El-Orabey, Sabah Morsy, P. Stephen Baenziger, Zakaria Al Ajlouni, Ismail Dowikat
Software Mentions: 2
Published: about 5 years ago
10.1371/journal.pone.0056334
MicroRNAs Distinguish Cytogenetic Subgroups in Pediatric AML and Contribute to Complex Regulatory Networks in AML-Relevant Pathways
Cited by: 35
Author(s): Svenja Daschkey, Silja Röttgers, Anamika Giri, Jutta Bradtke, Andrea Teigler‐Schlegel, Gunter Meister, Arndt Borkhardt, Pablo Landgraf
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0128872
Multi-Pathway Cellular Analysis on Crude Natural Drugs/Herbs from Japanese Kampo Formulations
Cited by: 1
Author(s): Shizuka Eshima, Satoru Yokoyama, Takashi Abe, Yoshihiro Hayakawa, Ikuo Saiki
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0190960
A systematic approach to analyze the social determinants of cardiovascular disease
Cited by: 23
Author(s): Mireya Martínez-García, Magaly Salinas-Ortega, Iván Estrada-Arriaga, Enrique Hernández‐Lemus, Rodrigo García-Herrera, Maité Vallejo
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0066476
The Composition of Microbiome in Larynx and the Throat Biodiversity between Laryngeal Squamous Cell Carcinoma Patients and Control Population
Cited by: 66
Author(s): Hongli Gong, Yi Shi, Liang Zhou, Chunping Wu, Pengyu Cao, Lei Tao, Chen Xu, Dongsheng Hou, Yuezhu Wang
Software Mentions: 2
Published: over 11 years ago
10.3390/cancers13051134
Distinct Signatures of Genomic Copy Number Variants Define Subgroups of Merkel Cell Carcinoma Tumors
Cited by: 6
Author(s): Natasha T. Hill, David Kim, Klaus J. Busam, Emily Y. Chu, Clayton Green, Isaac Brownell
Software Mentions: 2
Published: over 3 years ago
10.1155/2014/528396
NMR-Based Metabonomic Studies on Stomach Heat and Cold Syndromes and Intervention Effects of the Corresponding Formulas
Cited by: 6
Author(s): Zhigeng Zou, Bin Han, Ming Gong, Shumei Wang, Shengwang Liang
Software Mentions: 2
Published: almost 11 years ago
10.3389/fimmu.2018.01765
Antitumor Activity of Extract From the Sporoderm-Breaking Spore of Ganoderma lucidum: Restoration on Exhausted Cytotoxic T Cell With Gut Microbiota Remodeling
Cited by: 55
Author(s): Juanjuan Su, Lu Su, Dan Li, Ou Shuai, Yifan Zhang, Huijia Liang, Chunwei Jiao, Zhanchi Xu, Yong Lai, Yizhen Xie
Software Mentions: 2
Published: over 6 years ago
10.3389/fmicb.2019.01668
Consortium of Plant Growth-Promoting Rhizobacteria Strains Suppresses Sweet Pepper Disease by Altering the Rhizosphere Microbiota
Cited by: 85
Author(s): Lina Zhang, Dacheng Wang, Qiang Hu, Xiang-Qun Dai, Yue-Sheng Xie, Qing Li, Huamei Liu, Jianhua Guo
Software Mentions: 2
Published: over 5 years ago
10.3389/fmicb.2017.02132
Ecogenomics and Taxonomy of Cyanobacteria Phylum
Cited by: 82
Author(s): Juline M. Walter, Felipe H. Coutinho, Bas E. Dutilh, Jean Swings, Fabiano L. Thompson, Cristiane C. Thompson
Software Mentions: 2
Published: about 7 years ago
10.3389/fmolb.2020.626595
Prevention and Control of Pathogens Based on Big-Data Mining and Visualization Analysis
Cited by: 0
Author(s): Cuixia Chen, Lina Sun, Xuexin Hou, Pengcheng Du, Xiaolong Wang, Xiaochen Du, Yu-Fei Yu, Ruikun Cai, Lei Yu, Tianjun Li, Minna Luo, Yue Shen, Chao Lu, Qian Li, Chuan Zhang, Huafang Gao, Xu Ma, Hao Lin, Zhen Cao
Software Mentions: 2
Published: over 3 years ago
10.3389/fonc.2021.661758
Construction of an Immune-Related Six-lncRNA Signature to Predict the Outcomes, Immune Cell Infiltration, and Immunotherapy Response in Patients With Hepatocellular Carcinoma
Cited by: 39
Author(s): Pengcheng Zhou, Yao Lu, Yewei Zhang, Lei Wang
Software Mentions: 2
Published: over 3 years ago
10.3389/fphar.2020.594139
Catalpol Protects Against Pulmonary Fibrosis Through Inhibiting TGF-β1/Smad3 and Wnt/β-Catenin Signaling Pathways
Cited by: 8
Author(s): Fan Yang, Zhaosheng Hou, Hao-Yue Zhu, Xiaoxuan Chen, Wan-Yang Li, Ren-Shuang Cao, Yuxuan Li, Ru Chen, Wei Zhang
Software Mentions: 2
Published: almost 4 years ago
10.3389/fphar.2020.00932
1H NMR-Based Metabolomics Coupled With Molecular Docking Reveal the Anti-Diabetic Effects and Potential Active Components of Berberis vernae on Type 2 Diabetic Rats
Cited by: 22
Author(s): Qi Li, Chengcheng Zhao, Yunsen Zhang, Huan Du, Tong Xu, Xinmei Xu, Jing Zhang, Tingting Kuang, Xiulan Lai, Gang Fan
Software Mentions: 2
Published: over 4 years ago
10.3389/fphys.2020.629542
Calcium-Sensing Receptor Participates in High Glucose-Induced EndMT in Primary Human Aortic Endothelial Cells
Cited by: 2
Author(s): Cheng Yuan, Lihua Ni, Xianqin Yang, Changjiang Zhang, Xiaoyan Wu
Software Mentions: 2
Published: almost 4 years ago
10.3389/fpls.2020.00355
TRA1: A Locus Responsible for Controlling Agrobacterium-Mediated Transformability in Barley
Cited by: 7
Author(s): Beata Orman-Ligeza, Wendy Harwood, Pete E. Hedley, Alison Hinchcliffe, Malcolm Macaulay, Cristóbal Uauy, Kay Trafford
Software Mentions: 2
Published: over 4 years ago
10.1007/s10142-016-0537-5
Transcriptomics analysis of hulless barley during grain development with a focus on starch biosynthesis
Cited by: 14
Author(s): Yuchen Tang, Xingquan Zeng, Yulin Wang, Lijun Bai, Qijun Xu, Zexiu Wei, Hongjun Yuan, Nyima Tashi
Software Mentions: 2
Published: almost 8 years ago
10.1186/s13073-020-00798-3
PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks
Cited by: 11
Author(s): Ana Berbel Caban, Theodore R. Pak, Ajay Obla, Amy C. Dupper, Kieran I. Chacko, Lindsey Fox, Alexandra Mills, Brianne Ciferri, Irina Oussenko, Colleen Beckford, Marilyn Chung, Robert Sebra, Melissa Smith, Sarah Conolly, Gopi Patel, Andrew Kasarskis, Mitchell J. Sullivan, Deena R. Altman, Harm van Bakel
Software Mentions: 2
Published: about 4 years ago
10.1080/19490976.2021.1972746
Ursolic acid reverses liver fibrosis by inhibiting NOX4/NLRP3 inflammasome pathways and bacterial dysbiosis
Cited by: 27
Author(s): Yuan Nie, Qi Liu, Wang Zhang, Yipeng Wan, Chia-Chi Flora Huang, Xuan Zhu
Software Mentions: 2
Published: almost 4 years ago
10.3390/insects11090593
Bacteria Belonging to Pseudomonas typographi sp. nov. from the Bark Beetle Ips typographus Have Genomic Potential to Aid in the Host Ecology
Cited by: 23
Author(s): Ezequiel Peral-Aranega, Zaki Saati‐Santamaría, Miroslav Kolařík, Raúl Rivas, Paula García‐Fraile
Software Mentions: 2
Published: about 4 years ago
10.7150/jca.51147
MiR-573 suppresses cell proliferation, migration and invasion via regulation of E2F3 in pancreatic cancer
Cited by: 6
Author(s): Pengcheng Zhou, Peng Gao, Hongsong Fan, Xiaohui Lin, Yao Lu, Yao Wang, Mingyan Zhu, Xiaoxuan Fan, Zhiwei Wang, Zhang Ye-wei, Lei Wang
Software Mentions: 2
Published: almost 4 years ago
10.7150/jca.54221
Alterations of bacterial communities of vocal cord mucous membrane increases the risk for glottic laryngeal squamous cell carcinoma
Cited by: 6
Author(s): Zhen Dong, Chunming Zhang, Qinli Zhao, Hongxiang Hui, Xuting Xue, Shuxin Wen, Yongyan Wu, Wei Gao, Binquan Wang
Software Mentions: 2
Published: almost 4 years ago
10.7150/jca.56730
SLC34A2 Up-regulation And SLC4A4 Down-regulation Correlates With Invasion, Metastasis, And The MAPK Signaling Pathway In Papillary Thyroid Carcinomas
Cited by: 3
Author(s): Fengyan Huang, Haitao Wang, Juan Xiao, Chunchun Shao, Yong Zhou, Cong Wang, Maosong Gong, Jingfu Sun, Liqun Shan, Zhanyu Hao, Lihua Wang, Shuo Ding, Zhengping Yu, Jianing Liu, Hongying Jia
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.ppat.1007774
An integrative approach identifies direct targets of the late viral transcription complex and an expanded promoter recognition motif in Kaposi’s sarcoma-associated herpesvirus
Cited by: 15
Author(s): Divya Nandakumar, Britt A. Glaunsinger
Software Mentions: 2
Published: over 5 years ago
10.1038/srep09103
Tissue- and time-dependent transcription in Ixodes ricinus salivary glands and midguts when blood feeding on the vertebrate host
Cited by: 87
Author(s): Michail Kotsyfakis, Alexandra Schwarz, Jan Erhart, José M. C. Ribeiro
Software Mentions: 2
Published: over 9 years ago
10.1038/srep43518
A Systematic Approach to Time-series Metabolite Profiling and RNA-seq Analysis of Chinese Hamster Ovary Cell Culture
Cited by: 26
Author(s): Han-Hsiu Hsu, Michihiro Araki, M Mochizuki, Yutaka Hori, Masahiro Morimoto, Prihardi Kahar, Takeshi Yoshida, Tomohisa Hasunuma, Akihiko Kondo
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-020-59186-x
Target prediction and validation of microRNAs expressed from FSHR and aromatase genes in human ovarian granulosa cells
Cited by: 16
Author(s): Ilmatar Rooda, Kati Hensen, Birgitta Kaselt, Sergo Kasvandik, Martin Pook, Ants Kurg, Andres Salumets, Agne Velthut-Meikas
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41598-020-72484-8
Complete genome sequence of fish-pathogenic Aeromonas hydrophila HX-3 and a comparative analysis: insights into virulence factors and quorum sensing
Cited by: 13
Author(s): Lan Jin, Yu Chen, Wenge Yang, Zhaohui Qiao, Xiaojun Zhang
Software Mentions: 2
Published: about 4 years ago