pypi: glmnet | Projects | Ecosyste.ms: Papers

10.3389/fnagi.2021.605970

Immune Profiling of Parkinson’s Disease Revealed Its Association With a Subset of Infiltrating Cells and Signature Genes
Cited by: 12
Author(s): Xi Zhang, Zhihua Shao, Sutong Xu, Qiulu Liu, Chenming Liu, Yuan Luo, Lingjing Jin, Siguang Li
Software Mentions: 7
Published: almost 5 years ago

10.1289/EHP333

DNA Methylation Score as a Biomarker in Newborns for Sustained Maternal Smoking during Pregnancy
Cited by: 84
Author(s): Sarah E. Reese, Shanshan Zhao, Michael C. Wu, Bonnie R. Joubert, Christine Louise Parr, Siri Eldevik Håberg, Per Magne Ueland, Roy Miodini Nilsen, Øivind Midttun, Stein Emil Vollset, Shyamal D. Peddada, Wenche Nystad, Stephanie J. London
Software Mentions: 7
Published: over 8 years ago

10.15252/msb.20177881

High‐resolution definition of humoral immune response correlates of effective immunity against <scp>HIV</scp>
Cited by: 33
Author(s): Galit Alter, Karen G. Dowell, Eric N. Brown, Todd J. Suscovich, Anastassia Mikhailova, Alison E. Mahan, Bruce D. Walker, Falk Nimmerjahn, Chris Bailey‐Kellogg, Margaret E. Ackerman
Software Mentions: 7
Published: over 7 years ago

10.1002/1878-0261.12348

Integrating biomarkers across omic platforms: an approach to improve stratification of patients with indolent and aggressive prostate cancer
Cited by: 38
Author(s): Keefe Murphy, Brendan Murphy, Susie Boyce, Louise Flynn, Sarah Gilgunn, Colm J. O’Rourke, Cathy Rooney, Henning Stöckmann, Anna Walsh, Stephen P. Finn, Richard O’Kennedy, John O’Leary, Stephen R. Pennington, Antoinette S. Perry, Pauline M. Rudd, Radka Saldova, Orla Sheils, Denis C. Shields, R. William G. Watson
Software Mentions: 7
Published: over 7 years ago

10.1007/s11356-021-14381-9

Distribution, behavior, and erosion of uranium in vineyard soils
Cited by: 2
Author(s): Daniel Armando Campos, Sophia Blanché, Hermann F. Jungkunst, Allan Philippe
Software Mentions: 7
Published: over 4 years ago

10.3390/cancers13184559

Machine Learning Incorporating Host Factors for Predicting Survival in Head and Neck Squamous Cell Carcinoma Patients
Cited by: 5
Author(s): Han Yu, Sung Jun, Mark Farrugia, Austin J. Iovoli, Kimberly Wooten, Vishal Gupta, Ryan McSpadden, Moni Abraham Kuriakose, Michael R. Markiewicz, Justin Chan, Wesley L. Hicks, Mary E. Platek, Anurag Singh
Software Mentions: 7
Published: about 4 years ago

10.1186/s12920-021-01081-z

Identification and validation of a novel immune-related signature associated with macrophages and CD8 T cell infiltration predicting overall survival for hepatocellular carcinoma
Cited by: 2
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0164230

Blood Plasma-Derived Anti-Glycan Antibodies to Sialylated and Sulfated Glycans Identify Ovarian Cancer Patients
Cited by: 17
Author(s): Tatiana Pochechueva, Alexander Chinarev, Andreas Schoetzau, André Fedier, Nicolai V. Bovin, Neville F. Hacker, Francis Jacob, Viola Heinzelmann‐Schwarz
Software Mentions: 7
Published: about 9 years ago

10.1038/s41598-018-23584-z

Antidepressant drug-specific prediction of depression treatment outcomes from genetic and clinical variables
Cited by: 48
Author(s): Raquel Iniesta, Karen Hodgson, Daniel Ståhl, Karim Malki, Wolfgang Maier, Marcella Rietschel, Ole Mors, Joanna Hauser, Neven Henigsberg, Mojca Zvezdana Dernovšek, Daniel Souery, Richard Dobson, Katherine J. Aitchison, Anne Farmer, Peter McGuffin, Cathryn M. Lewis, Rudolf Uher
Software Mentions: 7
Published: over 7 years ago

10.1002/mp.12967

Machine learning algorithms for outcome prediction in (chemo)radiotherapy: An empirical comparison of classifiers
Cited by: 188
Author(s): Timo M. Deist, Frank J. W. M. Dankers, Gilmer Valdés, Robin Wijsman, I‐Chow Hsu, Cary Oberije, Tim Lustberg, Johan van Soest, Frank Hoebers, Arthur Jochems, Issam El Naqa, Leonard Wee, Olivier Morin, David R. Raleigh, Wouter Bots, Johannes H.A.M. Kaanders, J. Belderbos, Margriet Kwint, Timothy D. Solberg, R. Monshouwer, Johan Bussink, André Dekker, Philippe Lambin
Software Mentions: 7
Published: over 7 years ago

10.1007/s10994-019-05848-5

An evaluation of machine-learning for predicting phenotype: studies in yeast, rice, and wheat
Cited by: 79
Author(s): Nastasiya F. Grinberg, Oghenejokpeme I. Orhobor, Ross D. King
Software Mentions: 7
Published: about 6 years ago

10.1002/cam4.4189

Predicting the immune landscape of invasive breast carcinoma based on the novel signature of immune‐related lncRNA
Cited by: 7
Author(s): Shuang Shen, Xin Chen, Xiaochi Hu, Jinlong Huo, Libo Luo, Xuezhi Zhou
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0185380

Recapitulation of Ayurveda constitution types by machine learning of phenotypic traits
Cited by: 24
Author(s): Prabhat Tiwari, Rintu Kutum, Tavpritesh Sethi, Ankita Shrivastava, Bhushan Girase, Shilpi Aggarwal, Rutuja Patil, Dhiraj Agarwal, Pramod Gautam, Anurag Agrawal, Debasis Dash, Saurabh Ghosh, Sanjay Juvekar, Mitali Mukerji, Bhavana Prasher
Software Mentions: 7
Published: about 8 years ago

10.1155/2021/9918498

Integrated Analysis of Weighted Gene Coexpression Network Analysis Identifying Six Genes as Novel Biomarkers for Alzheimer’s Disease
Cited by: 15
Author(s): Tingting Zhang, Nanyang Liu, Wei Wei, Zhen Zhang, Hao Li
Software Mentions: 7
Published: over 4 years ago

10.3389/fonc.2021.733595

Identification of Glycolysis-Related lncRNAs and the Novel lncRNA WAC-AS1 Promotes Glycolysis and Tumor Progression in Hepatocellular Carcinoma
Cited by: 22
Author(s): Xigang Xia, Hao Zhang, Peng Xia, Yu Zhu, Jie Liu, Kequan Xu, Yufeng Yuan
Software Mentions: 7
Published: about 4 years ago

10.3389/fonc.2021.632459

Construction and Validation of a Novel Eight-Gene Risk Signature to Predict the Progression and Prognosis of Bladder Cancer
Cited by: 3
Author(s): Ruiliang Wang, Zongtai Zheng, Shun Mao, Wentao Zhang, Ji Liu, Cheng Li, Shenghua Liu, Xudong Yao
Software Mentions: 7
Published: over 4 years ago

10.1186/s12935-020-01429-y

Establishment of the prognostic index of lung squamous cell carcinoma based on immunogenomic landscape analysis
Cited by: 11
Author(s): Jianguo Zhang, Jianzhong Zhang, Cheng Yuan, Yuan Luo, Yangyi Li, Panpan Dai, Wenjie Sun, Nannan Zhang, Jiangbo Ren, Mengjie Zhang, Yan Gong, Conghua Xie
Software Mentions: 7
Published: over 5 years ago

10.1186/s12935-021-02050-3

Constructe a novel 5 hypoxia genes signature for cervical cancer
Cited by: 13
Author(s): Yang Yang, Yaling Li, Ruiqun Qi, Lan Zhang
Software Mentions: 7
Published: over 4 years ago

10.1186/s12935-020-01216-9

Integrated nomogram based on five stage-related genes and TNM stage to predict 1-year recurrence in hepatocellular carcinoma
Cited by: 14
Author(s): Haohan Liu, Yongcong Yan, Ruibing Chen, Mengdi Zhu, Jianhong Lin, Chuanchao He, Bingchao Shi, Ke Wen, Kai Mao, Zhiyu Xiao
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-021-97678-6

Neutrophil-to-lymphocyte ratio and monocyte-to-lymphocyte ratio predict length of hospital stay in myocarditis
Cited by: 16
Author(s): Moritz Mirna, Lukas Schmutzler, Albert Topf, Uta C. Hoppe, Michael Lichtenauer
Software Mentions: 7
Published: about 4 years ago

10.1128/mBio.00885-17

Pathogenicity Locus, Core Genome, and Accessory Gene Contributions to <i>Clostridium difficile</i> Virulence
Cited by: 42
Author(s): Brittany B. Lewis, Rebecca A. Carter, Lilan Ling, Ingrid Leiner, Ying Taur, Mini Kamboj, Erik R. Dubberke, João B. Xavier, Eric G. Pamer
Software Mentions: 7
Published: about 8 years ago

10.3389/fonc.2020.542140

Identification of Immune-Related lncRNA Signature to Predict Prognosis and Immunotherapeutic Efficiency in Bladder Cancer
Cited by: 19
Author(s): Lianghao Zhang, Long‐Qing Li, Yonghao Zhan, Jian‐Ge Wang, Zhaowei Zhu, Xuepei Zhang
Software Mentions: 7
Published: almost 5 years ago

10.3389/fonc.2021.626961

Identification of Stemness Characteristics Associated With the Immune Microenvironment and Prognosis in Gastric Cancer
Cited by: 15
Author(s): Deli Mao, Zhijun Zhou, Shenglei Song, Dongsheng Li, Yulong He, Zhewei Wei, Changhua Zhang
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-020-75573-w

Development of a novel immune-related genes prognostic signature for osteosarcoma
Cited by: 17
Author(s): Zhi-Xi Wu, Yajun Deng, Guangzhi Zhang, Enhui Ren, Wenhua Yuan, Qiqi Xie
Software Mentions: 7
Published: about 5 years ago

10.1038/s41416-019-0694-0

Development of PancRISK, a urine biomarker-based risk score for stratified screening of pancreatic cancer patients
Cited by: 29
Author(s): Oleg Blyuss, Alexey Zaikin, Valeriia Cherepanova, Daniel Munblit, Elena M. Kiseleva, O. M. Prytomanova, Stephen W. Duffy, Tatjana Crnogorac‐Jurčević
Software Mentions: 7
Published: almost 6 years ago

10.1038/s41598-020-75473-z

Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning
Cited by: 16
Author(s): Satoru Kawakita, Jennifer L. Beaumont, Vadim Jucaud, Matthew J Everly
Software Mentions: 7
Published: about 5 years ago

10.1038/s42003-020-01416-z

Genome-wide association studies and heritability analysis reveal the involvement of host genetics in the Japanese gut microbiota
Cited by: 37
Author(s): Sachiko Ishida, Koichi Kato, Masami Tanaka, Toshitaka Odamaki, Rieko Kubo, Eri Mitsuyama, Jin‐zhong Xiao, Rui Yamaguchi, Satoshi Uematsu, Seiya Imoto, Satoru Miyano
Software Mentions: 7
Published: about 5 years ago

10.1042/BSR20203496

Screening of immunosuppressive cells from colorectal adenocarcinoma and identification of prognostic markers
Cited by: 5
Author(s): Fazhan Li, Jun Zhou, Zedong Li, Leiyi Zhang
Software Mentions: 7
Published: over 4 years ago

10.1186/s13148-021-01129-y

Differential DNA methylation and changing cell-type proportions as fibrotic stage progresses in NAFLD
Cited by: 22
Author(s): Nicholas Johnson, Xiumei Wu, Christopher D. Still, Xin Chu, Anthony Petrick, Glenn S. Gerhard, Karen N. Conneely, Johanna K. DiStefano
Software Mentions: 7
Published: over 4 years ago

10.3389/fonc.2020.622251

Screening and Identification of Four Prognostic Genes Related to Immune Infiltration and G-Protein Coupled Receptors Pathway in Lung Adenocarcinoma
Cited by: 3
Author(s): Yan Wang, Longqing Qiu, Yu Chen, Xia Zhang, Yang Peng, Feng Xu
Software Mentions: 7
Published: almost 5 years ago

10.1042/BSR20200492

Profiles of overall survival-related gene expression-based risk signature and their prognostic implications in clear cell renal cell carcinoma
Cited by: 3
Author(s): Zihao He, Tuo Deng, Xiaolu Duan, Guohua Zeng
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0137222

Discovery of Intermediary Genes between Pathways Using Sparse Regression
Cited by: 1
Author(s): Kuo-ching Liang, Ashwini Patil, Kenta Nakai
Software Mentions: 7
Published: about 10 years ago

10.3389/fnins.2020.00289

MVPA-Light: A Classification and Regression Toolbox for Multi-Dimensional Data
Cited by: 96
Author(s): Matthias S. Treder
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-021-88177-9

A three-feature prediction model for metastasis-free survival after surgery of localized clear cell renal cell carcinoma
Cited by: 7
Author(s): Kalle Mattila, Teemu D. Laajala, Sara Tornberg, Tuomas P. Kilpeläinen, Paula Vainio, Otto Ettala, Peter J. Boström, Harry Nísen, Laura L. Elo, Panu M. Jaakkola
Software Mentions: 7
Published: over 4 years ago

10.3389/fonc.2020.01409

Development and Validation of a Tumor Mutation Burden–Related Immune Prognostic Model for Lower-Grade Glioma
Cited by: 43
Author(s): Yin Wu, Xingjun Jiang, Jun Tan, Zhaoqi Xin, Quanwei Zhou, Chaohong Zhan, Xianyong Fu, Zhaoping Wu, Youwei Guo, Zhipeng Jiang, Chao Ren, Guihua Tang
Software Mentions: 7
Published: over 5 years ago

10.3390/cells10092430

Artificial Intelligence-Assisted Identification of Genetic Factors Predisposing High-Risk Individuals to Asymptomatic Heart Failure
Cited by: 7
Author(s): Ning Yang, Chi-Hsiao Yeh, Tsung Hsien Tsai, Yi Ju Chou, Paul Wei Che Hsu, Chun-Hsien Li, Yun Hsuan Chan, Ling Kuo, Chun Tai Mao, Yu-Chiau Shyu, Ming‐Jui Hung, Chao‐Lun Lai, Huey Kang Sytwu, Ting Fen Tsai
Software Mentions: 7
Published: about 4 years ago

10.1155/2019/4572130

Intraoperative Hepatic Blood Inflow Can Predict Early Acute Kidney Injury following DCD Liver Transplantation: A Retrospective Observational Study
Cited by: 2
Author(s): Ao Jiao, Qingpeng Liu, Feng Li, Rui Guo, Bowen Wang, Xiwen Lu, Ning Sun, Chengshuo Zhang, Xiaohang Li, Jialin Zhang
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-020-63186-2

Socially engaged calves are more likely to be colonised by VTEC O157:H7 than individuals showing signs of poor welfare
Cited by: 4
Author(s): Lena-Mari Tamminen, C. Reed Hranac, Johan Dicksved, Erik Eriksson, Ulf Emanuelson, Linda J. Keeling
Software Mentions: 7
Published: over 5 years ago

10.1038/s41419-021-04015-w

Autophagy-related circRNA evaluation reveals hsa_circ_0001747 as a potential favorable prognostic factor for biochemical recurrence in patients with prostate cancer
Cited by: 16
Author(s): Chuanfan Zhong, Kuan-Hung Wu, Shuo Wang, Zining Long, Taowei Yang, Weibo Zhong, Xiao Tan, Zixian Wang, Chuanyin Li, Jianming Lü, Xiangming Mao
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-019-53843-6

Monocytes affect bone mineral density in pre- and postmenopausal women through ribonucleoprotein complex biogenesis by integrative bioinformatics analysis
Cited by: 8
Author(s): Kang-Wen Xiao, Jiali Li, Zhao-Yi Zeng, Zhibo Liu, Zhiqiang Hou, Xin Yan, Lin Cai
Software Mentions: 7
Published: about 6 years ago

10.3390/cancers13081934

Cannabinoid Receptor Type-2 in B Cells Is Associated with Tumor Immunity in Melanoma
Cited by: 3
Author(s): Thomas Gruber, Steve Robatel, Mirela Kremenovic, Lukas Bäriswyl, Jürg Gertsch, Mirjam Schenk
Software Mentions: 7
Published: over 4 years ago

10.18632/aging.202278

Identification of long non-coding RNA signatures for squamous cell carcinomas and adenocarcinomas
Cited by: 0
Author(s): Suyan Tian, Mingbo Tang, Jialin Li, Chi Wang, Wei Liu
Software Mentions: 7
Published: almost 5 years ago

10.3389/fneur.2021.580440

Machine Learning Models on ADC Features to Assess Brain Changes of Children With Pierre Robin Sequence
Cited by: 0
Author(s): Ying Wang, Feng Yang, Meijiao Zhu, Ming Yang
Software Mentions: 7
Published: over 4 years ago

10.3389/fonc.2020.603717

Enhanced Angiogenesis in Salivary Duct Carcinoma Ex-Pleomorphic Adenoma
Cited by: 6
Author(s): Takayoshi Suzuki, Satoshi Kano, Masanobu Suzuki, Shinichiro Yasukawa, Takatsugu Mizumachi, Nobuko Tsushima, Kanako C. Hatanaka, Yutaka Hatanaka, Yoshihiro Matsuno, Akihiro Homma
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12885-021-08565-2

Predictive potential of Nomogram based on GMWG for patients with hepatocellular carcinoma after radical resection
Cited by: 2
Author(s): Liying Ren, Dongbo Chen, Wentao Xu, Tingfeng Xu, Rongyu Wei, Liya Suo, Yingze Huang, Hongsong Chen, Weijia Liao
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-019-45989-0

Machine learning approaches to predict lupus disease activity from gene expression data
Cited by: 48
Author(s): Brian Kegerreis, Michelle D. Catalina, Prathyusha Bachali, Nicholas S. Geraci, Adam C. Labonte, Chen Zeng, Nathaniel Stearrett, Keith A. Crandall, Peter E. Lipsky, Amrie C. Grammer
Software Mentions: 7
Published: over 6 years ago

10.1002/bimj.201500234

Identification of biomarker-by-treatment interactions in randomized clinical trials with survival outcomes and high-dimensional spaces
Cited by: 24
Author(s): Nils Ternès, Federico Rotolo, Georg Heinze, Stefan Michiels
Software Mentions: 7
Published: about 9 years ago

10.1038/s41598-019-50260-7

Plasma metabolites associated with homeostatic model assessment of insulin resistance: metabolite-model design and external validation
Cited by: 5
Author(s): Pablo Hernández‐Alonso, Jesús García‐Gavilán, Lucía Camacho-Barcia, Anders Sjödin, Thorsten Hansen, Jo Harrold, Jordi Salas‐Salvadó, Jason C.G. Halford, Sı́lvia Canudas, Mònica Bulló
Software Mentions: 7
Published: about 6 years ago

10.3389/fmolb.2020.611626

Identification of a Five-Autophagy-Related-lncRNA Signature as a Novel Prognostic Biomarker for Hepatocellular Carcinoma
Cited by: 30
Author(s): Xiaoyu Deng, Qinghua Bi, Shihan Chen, Xianhua Chen, Shuhui Li, Zhaoyang Zhong, Guo Wei, Xiaohui Li, Youcai Deng, Yang Yao
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-018-21161-y

Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response
Cited by: 16
Author(s): Yukie Kashima, Ayako Suzuki, Ying Liu, Masahito Hosokawa, Hiroko Matsunaga, Masamitsu Shirai, Kohji Arikawa, Sumio Sugano, Takashi Kohno, Haruko Takeyama, Katsuya Tsuchihara, Yutaka Suzuki
Software Mentions: 6
Published: almost 8 years ago

10.3389/fmolb.2021.636991

Identifying Dendritic Cell–Related Genes Through a Co-Expression Network to Construct a 12-Gene Risk-Scoring Model for Predicting Hepatocellular Carcinoma Prognosis
Cited by: 7
Author(s): Chao-Yuan Huang, Xiaotao Jiang, Yuancheng Huang, Lina Zhao, Peiwu Li, Fengbin Liu
Software Mentions: 6
Published: over 4 years ago

10.3389/fmolb.2021.615084

Development of a Machine Learning-Based Autophagy-Related lncRNA Signature to Improve Prognosis Prediction in Osteosarcoma Patients
Cited by: 12
Author(s): Guangzhi Zhang, Zhi-Xi Wu, Chunying Li, Enhui Ren, Wenhua Yuan, Yajun Deng, Qiqi Xie
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-018-21851-7

Elastic net regularized regression for time-series analysis of plasma metabolome stability under sub-optimal freezing condition
Cited by: 15
Author(s): Gerard Bryan Gonzales, Sarah De Saeger
Software Mentions: 6
Published: over 7 years ago

10.1186/s13059-020-01953-0

ncHMR detector: a computational framework to systematically reveal non-classical functions of histone modification regulators
Cited by: 7
Author(s): Shengen Hu, Dawei Huo, Zhaowei Yu, Yujie Chen, Jing Liu, Lin Liu, Xudong Wu, Yong Zhang
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12893-020-00726-7

A novel nomogram to predict the risk of anastomotic leakage in patients after oesophagectomy
Cited by: 10
Author(s): Chengjie Huang, Haijun Yao, Qi Huang, Huijie Lu, Mengdan Xu
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2020.610009

Evidence That Microorganisms at the Animal-Water Interface Drive Sea Star Wasting Disease
Cited by: 28
Author(s): Citlalli A Aquino, Ryan M Besemer, Christopher M. DeRito, Jan Kocian, Ian Porter, Peter T. Raimondi, Jordan E Rede, Lauren M. Schiebelhut, Jed P. Sparks, John P. Wares, Ian Hewson
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13104-017-2540-x

The effect of mislabeled phenotypic status on the identification of mutation-carriers from SNP genotypes in dairy cattle
Cited by: 6
Author(s): Stefano Biffani, Hubert Pausch, Hermann Schwarzenbacher, Filippo Biscarini
Software Mentions: 6
Published: over 8 years ago

10.18632/aging.103743

Identification of subtype-specific genes signature by WGCNA for prognostic prediction in diffuse type gastric cancer
Cited by: 6
Author(s): Qi Zhou, Liqun Zhou, Shihao Li, Yi‐Wu Yuan, Li Liu, Jinliang Wang, Deng-Zhong Wu, You Wu, Lin Xin
Software Mentions: 6
Published: about 5 years ago

10.1186/s12711-016-0219-8

Genome-wide prediction using Bayesian additive regression trees
Cited by: 35
Author(s): Patrik Waldmann
Software Mentions: 6
Published: over 9 years ago

10.1093/g3journal/jkab248

Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection of drought-related traits in grapevine
Cited by: 5
Author(s): Charlotte Brault, Agnès Doligez, Le Cunff, Aude Coupel‐Ledru, Thierry Simonneau, Julien Chiquet, Patrice This, Timothée Flutre
Software Mentions: 6
Published: over 4 years ago

10.1186/s12859-021-04189-2

A novel miRNA-based classification model of risks and stages for clear cell renal cell carcinoma patients
Cited by: 11
Author(s): Eskezeia Y. Dessie, Jeffrey J. P. Tsai, Jan‐Gowth Chang, Ka-Lok Ng
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0199758

Antipsychotic prescribing patterns on admission to and at discharge from a tertiary care program for treatment-resistant psychosis
Cited by: 7
Author(s): Lik Hang N. Lee, Ric M. Procyshyn, Ralph de Vere White, Todd S. Woodward, William G. Honer, Alasdair M. Barr
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pcbi.1009197

Multidimensional analysis of immune responses identified biomarkers of recent Mycobacterium tuberculosis infection
Cited by: 1
Author(s): Tessa Lloyd, Pia Steigler, Cheleka A M Mpande, Virginie Rozot, Boitumelo Mosito, Constance Schreuder, Timothy D. Reid, Mark Hatherill, Thomas J. Scriba, Francesca Little, Elisa Nemes
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pcbi.1008315

Leveraging functional annotation to identify genes associated with complex diseases
Cited by: 13
Author(s): Wei Liu, Mo Li, Wenfeng Zhang, Geyu Zhou, Weijie Xing, Jiawei Wang, Qiongshi Lu, Hongyu Zhao
Software Mentions: 6
Published: about 5 years ago

10.3389/fnagi.2021.602781

Exploring the Key Genes and Identification of Potential Diagnosis Biomarkers in Alzheimer’s Disease Using Bioinformatics Analysis
Cited by: 20
Author(s): Wuhan Yu, Weihua Yu, Yan Yang, Yang Lü
Software Mentions: 6
Published: over 4 years ago

10.18632/aging.102817

Identification of prognostic immune-related genes in the tumor microenvironment of endometrial cancer
Cited by: 61
Author(s): Peigen Chen, Yongtao Yang, Yu Zhang, Senwei Jiang, Xiaomao Li, Jing Wan
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0222733

BWGS: A R package for genomic selection and its application to a wheat breeding programme
Cited by: 30
Author(s): Gilles Charmet, Louis-Gautier Tran, Jérôme Auzanneau, Renaud Rincent, Sophie Bouchet
Software Mentions: 6
Published: over 5 years ago

10.3389/fmolb.2016.00026

biosigner: A New Method for the Discovery of Significant Molecular Signatures from Omics Data
Cited by: 46
Author(s): Philippe Rinaudo, Samia Boudah, Christophe Junot, Etienne Thévenot
Software Mentions: 6
Published: over 9 years ago

10.7717/peerj.8827

Identification of a three-m6A related gene risk score model as a potential prognostic biomarker in clear cell renal cell carcinoma
Cited by: 21
Author(s): Yiqiao Zhao, Zijia Tao, Xiaonan Chen
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.10633

Gene signatures with predictive and prognostic survival values in human osteosarcoma
Cited by: 4
Author(s): Zhongpeng Qiu, Xuehui Du, Kai Chen, Yi Dai, Sibo Wang, Jun Xiao, Gang Li
Software Mentions: 6
Published: almost 5 years ago

10.12688/f1000research.17149.2

Hub genes in a pan-cancer co-expression network show potential for predicting drug responses
Cited by: 0
Author(s): Francisco Azuaje, Tony Kaoma, Céline Jeanty, Petr V. Nazarov, Arnaud Muller, Sang Yoon Kim, Gunnar Dittmar, Anna Golebiewska, Simone P. Niclou
Software Mentions: 6
Published: over 6 years ago

10.7717/peerj.9621

Identification and validation of prognostic signature for breast cancer based on genes potentially involved in autophagy
Cited by: 11
Author(s): Shanliang Zhong, Huanwen Chen, Su-Jin Yang, Jifeng Feng, Siying Zhou
Software Mentions: 6
Published: over 5 years ago

10.1186/s12874-019-0673-4

Comparison of methods for early-readmission prediction in a high-dimensional heterogeneous covariates and time-to-event outcome framework
Cited by: 7
Author(s): Simon Bussy, Raphaël Veil, Vincent Looten, Anita Burgun, Stéphane Gaı̈ffas, Agathe Guilloux, Brigitte Ranque, Anne‐Sophie Jannot
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pcbi.1008831

Accuracy in the prediction of disease epidemics when ensembling simple but highly correlated models
Cited by: 9
Author(s): Denis A. Shah, E. D. De Wolf, Pierce A. Paul, L. V. Madden
Software Mentions: 6
Published: over 4 years ago

10.1186/s12859-021-04264-8

mLoc-mRNA: predicting multiple sub-cellular localization of mRNAs using random forest algorithm coupled with feature selection via elastic net
Cited by: 6
Author(s): Prabina Kumar Meher, Anil Rai, Atmakuri Ramakrishna Rao
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0204819

Sensor-based measurement of critical care nursing workload: Unobtrusive measures of nursing activity complement traditional task and patient level indicators of workload to predict perceived exertion
Cited by: 20
Author(s): Michael A. Rosen, Aimee Dietz, Nam Lee, I-Jeng Wang, J. Markowitz, Rhonda Wyskiel, Ting Yang, Carey E. Priebe, Adam Sapirstein, Ayşe P. Gürses, Peter J. Pronovost
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pcbi.1007337

Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets
Cited by: 15
Author(s): M. Vijayabaskar, Debbie K. Goode, Nadine Obier, Monika Lichtinger, Amber M.L. Emmett, Fatin N Zainul Abidin, Nisar Ahmed Shar, Rebecca Hannah, Salam A. Assi, Michael Lie-A-Ling, Berthold Göttgens, Georges Lacaud, Valérie Kouskoff, Constanze Bonifer, David R. Westhead
Software Mentions: 6
Published: about 6 years ago

10.1186/1471-2105-16-S6-S1

Sparse conditional logistic regression for analyzing large-scale matched data from epidemiological studies: a simple algorithm
Cited by: 16
Author(s): Marta Avalos, Hélène Pouyes, Yves Grandvalet, Ludivine Orriols, Emmanuel Lagarde
Software Mentions: 6
Published: over 10 years ago

10.1186/1471-2288-14-116

Validation of prediction models based on lasso regression with multiply imputed data
Cited by: 91
Author(s): Jammbe Z. Musoro, Aeilko H. Zwinderman, Milo A. Puhan, Gerben ter Riet, Ronald B. Geskus
Software Mentions: 6
Published: about 11 years ago

10.1186/s13071-018-2960-z

Detection of Plasmodium berghei infected Anopheles stephensi using near-infrared spectroscopy
Cited by: 26
Author(s): Pedro M. Esperança, Andrew M. Blagborough, Dari F. Da, Floyd E. Dowell, Thomas S. Churcher
Software Mentions: 6
Published: over 7 years ago

10.1186/s12874-015-0066-2

Comparison of subset selection methods in linear regression in the context of health-related quality of life and substance abuse in Russia
Cited by: 53
Author(s): Olga Morozova, Olga S. Levina, Anneli Uusküla, Robert Heimer
Software Mentions: 6
Published: about 10 years ago

10.3389/fonc.2020.596087

Identification of a Novel Glycolysis-Related Gene Signature for Predicting Breast Cancer Survival
Cited by: 18
Author(s): Dai Zhang, Yi Zheng, Shuanying Yang, Yiche Li, Meng Wang, Jia Yao, Yao Deng, Na Li, Bajin Wei, Ying Wu, Yuyao Zhu, Hongtao Li, Zhijun Dai
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12911-021-01463-4

Assessing elderly’s functional balance and mobility via analyzing data from waist-mounted tri-axial wearable accelerometers in timed up and go tests
Cited by: 8
Author(s): Lisha Yu, Yang Zhao, Hailiang Wang, Tien‐Lung Sun, Terrence E. Murphy, Kwok‐Leung Tsui
Software Mentions: 6
Published: over 4 years ago

10.3390/v13020169

The Ecology of Nipah Virus in Bangladesh: A Nexus of Land-Use Change and Opportunistic Feeding Behavior in Bats
Cited by: 39
Author(s): Clifton McKee, Ariful Islam, Stephen P. Luby, Henrik Salje, Peter J. Hudson, Raina K. Plowright, Emily S. Gurley
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12859-018-2344-6

Priority-Lasso: a simple hierarchical approach to the prediction of clinical outcome using multi-omics data
Cited by: 32
Author(s): Simon Klau, Vindi Jurinović, Roman Hornung, Tobias Herold, Anne‐Laure Boulesteix
Software Mentions: 6
Published: about 7 years ago

10.1186/s12880-021-00581-9

Radiomic model for differentiating parotid pleomorphic adenoma from parotid adenolymphoma based on MRI images
Cited by: 11
Author(s): Lele Song, Shun-jun Chen, Wang Chen, Zhan Shi, Xiaodong Wang, Lina Song, Chen Diansen
Software Mentions: 6
Published: over 4 years ago

10.18632/aging.203190

Immune infiltration and a ferroptosis-associated gene signature for predicting the prognosis of patients with endometrial cancer
Cited by: 32
Author(s): Wenwu Yin, Liao Fuchun, Mengjie Chen, Xiaoqing Qin, Hao Lai, Yuan Lin, Desheng Yao
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2021.642563

A Novel Five-Gene Signature for Prognosis Prediction in Hepatocellular Carcinoma
Cited by: 14
Author(s): Lisa Su, Genhao Zhang, Xiangdong Kong
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2020.580513

A Novel RNA Binding Protein-Related Prognostic Signature for Hepatocellular Carcinoma
Cited by: 25
Author(s): Yongbiao Huang, Sheng Chen, Qin Wan, Yali Wang, Long Li, Qianxia Li, Xianglin Yuan
Software Mentions: 6
Published: about 5 years ago

10.15252/msb.20167435

Transcriptional regulatory networks underlying gene expression changes in Huntington's disease
Cited by: 51
Author(s): Seth A. Ament, Jocelynn Pearl, Jeffrey P. Cantle, Robert M. Bragg, Peter J. Skene, Sydney R. Coffey, Dani E Bergey, Vanessa C. Wheeler, Marcy E. MacDonald, Nitin S. Baliga, Jim Rosinski, Leroy Hood, Jeffrey B. Carroll, Nathan D. Price
Software Mentions: 6
Published: over 7 years ago

10.1002/1878-0261.12351

GeneExpressScore Signature: a robust prognostic and predictive classifier in gastric cancer
Cited by: 18
Author(s): Xiaoqiang Zhu, Xianglong Tian, Tiantian Sun, Chuangqi Yu, Yingying Cao, Tingting Yan, Chaoqin Shen, Yanwei Lin, Jing–Yuan Fang, Jie Hong, Haoyan Chen
Software Mentions: 6
Published: about 7 years ago

10.3389/fmicb.2019.02120

Incorporating Statistical Test and Machine Intelligence Into Strain Typing of Staphylococcus haemolyticus Based on Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Cited by: 18
Author(s): Chia-Ru Chung, Hsin-Yao Wang, Frank Lien, Yi-Ju Tseng, Chun‐Hsien Chen, Tzong-Yi Lee, Tsui Ping Liu, Jorng-Tzong Horng, Jang Jih Lu
Software Mentions: 6
Published: about 6 years ago

10.1002/1878-0261.12707

Classification of diffuse lower‐grade glioma based on immunological profiling
Cited by: 40
Author(s): Fan Wu, Zhiliang Wang, Kuan‐Yu Wang, Guanzhang Li, Rui‐Chao Chai, Yuqing Liu, Haiyan Jiang, You Zhai, Yuemei Feng, Zheng Zhao, Wei Zhang
Software Mentions: 6
Published: over 5 years ago

10.1186/s12920-021-01036-4

Multi-factor regulatory network and different clusters in hypertrophic obstructive cardiomyopathy
Cited by: 3
Author(s): Xianyu Qin, Lei Huang, Sicheng Chen, Shaoxian Chen, Pengju Wen, Yueheng Wu, Jian Zhuang
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2019.01485

The Potential of Radiomics Nomogram in Non-invasively Prediction of Epidermal Growth Factor Receptor Mutation Status and Subtypes in Lung Adenocarcinoma
Cited by: 31
Author(s): Wei Zhao, Ying Wu, Yanan Xu, Yingli Sun, Pan Gao, Min Tan, Wenrui Ma, Cheng Li, Liang Jin, Yanqing Hua, Jun Liu, Ming Li
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-018-23494-0

Methylation-to-Expression Feature Models of Breast Cancer Accurately Predict Overall Survival, Distant-Recurrence Free Survival, and Pathologic Complete Response in Multiple Cohorts
Cited by: 6
Author(s): Jeffrey Thompson, Brock C. Christensen, Carmen J. Marsit
Software Mentions: 6
Published: over 7 years ago

10.1155/2020/8974793

Comprehensive Analysis of Tumor-Infiltrating Immune Cells and Relevant Therapeutic Strategy in Esophageal Cancer
Cited by: 14
Author(s): Guangrong Lu, Liping Chen, Shengjie Wu, Yuao Feng, Tiesu Lin
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.725181

Identification of N6-Methylandenosine-Related lncRNAs for Subtype Identification and Risk Stratification in Gastric Adenocarcinoma
Cited by: 9
Author(s): Yuancheng Huang, Zehong Yang, Chao-Yuan Huang, Xiaotao Jiang, Yanhua Yan, Kunhai Zhuang, Yi Wen, Fengbin Liu, Peiwu Li
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pone.0217536

Challenges and caveats of a multi-center retrospective radiomics study: an example of early treatment response assessment for NSCLC patients using FDG-PET/CT radiomics
Cited by: 30
Author(s): Janita E. van Timmeren, Sara Carvalho, Ralph T.H. Leijenaar, Esther G.C. Troost, Wouter van Elmpt, Dirk De Ruysscher, Jean-Pierre Muratet, Fabrice Denis, T. Schimek-Jasch, Ursula Nestle, Arthur Jochems, Henry C. Woodruff, Cary Oberije, Philippe Lambin
Software Mentions: 6
Published: over 6 years ago

10.3390/microorganisms9020252

Relationships among Fecal, Air, Oral, and Tracheal Microbial Communities in Pigs in a Respiratory Infection Disease Model
Cited by: 7
Author(s): Robert Valeris-Chacín, Amanda Sponheim, Eduardo Fano, Richard E. Isaacson, Randall S. Singer, Joel Nerem, Fernando Leite, Maria Pieters
Software Mentions: 6
Published: almost 5 years ago

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