pypi: ggplot | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0232436

Keep Garfagnina alive. An integrated study on patterns of homozygosity, genomic inbreeding, admixture and breed traceability of the Italian Garfagnina goat breed
Cited by: 9
Author(s): Christos Dadousis, Francesca Cecchi, Michela Ablondi, Maria Chiara Fabbri, Alessandra Stella, Rıccardo Bozzi
Software Mentions: 4
Published: almost 4 years ago

10.3390/ani11051372

Choice of Commercial DNA Extraction Method Does Not Affect 16S Sequencing Outcomes in Cloacal Swabs
Cited by: 0
Author(s): Emily Van Syoc, Natália Carrillo Gaeta, Erika Ganda
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0255971

TCF21 regulates miR-10a-5p/LIN28B signaling to block the proliferation and invasion of melanoma cells
Cited by: 5
Author(s): Hongxia Zhu, Mengshi Kang, Xinping Bai
Software Mentions: 4
Published: about 3 years ago

10.1534/g3.119.400070

Long-Term Conservation of Ohnologs Through Partial Tetrasomy Following Whole-Genome Duplication in Salmonidae
Cited by: 24
Author(s): Matthew A. Campbell, Matthew C. Hale, Garrett J. McKinney, Krista M. Nichols, Devon E. Pearse
Software Mentions: 4
Published: over 5 years ago

10.1186/s12974-016-0720-6

MOG-IgG in NMO and related disorders: a multicenter study of 50 patients. Part 4: Afferent visual system damage after optic neuritis in MOG-IgG-seropositive versus AQP4-IgG-seropositive patients
Cited by: 197
Author(s): Florence Pache, Hanna Zimmermann, Janine Mikolajczak, Stefan Schumacher, Anna Lacheta, Frederike Cosima Oertel, Judith Bellmann‐Strobl, Sven Jarius, Brigitte Wildemann, Markus Reindl, Amy Waldman, Kerstin Soelberg, Nasrin Asgari, Marius Ringelstein, Orhan Aktaş, Nikolai Gross, Mathias Buttmann, Thomas Ach, Klemens Ruprecht, Friedemann Paul, Alexander U. Brandt
Software Mentions: 4
Published: about 8 years ago

10.1186/s12967-019-1824-4

Identification of an immune signature predicting prognosis risk of patients in lung adenocarcinoma
Cited by: 123
Author(s): Qian Song, Jun Shang, Zaixing Yang, Lanlin Zhang, Chufan Zhang, Jianing Chen, Xianghua Wu
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-017-0331-1

Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities
Cited by: 110
Author(s): Robert Danczak, Michael D. Johnston, Chris Kenah, Michael T. Slattery, Kelly Wrighton, Michael J. Wilkins
Software Mentions: 4
Published: about 7 years ago

10.1099/mic.0.001016

A palette of fluorophores that are differentially accumulated by wild-type and mutant strains of Escherichia coli: surrogate ligands for profiling bacterial membrane transporters
Cited by: 14
Author(s): J. Enrique Salcedo-Sora, Srijan Jindal, Steve O’Hagan, Douglas B. Kell
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0187079

Immune related gene expression in worker honey bee (Apis mellifera carnica) pupae exposed to neonicotinoid thiamethoxam and Varroa mites (Varroa destructor)
Cited by: 36
Author(s): Tanja Tesovnik, Ivanka Cizelj, Minja Zorc, Manuela Čitar, Janko Božič, Gordana Glavan, Mojca Narat
Software Mentions: 4
Published: about 7 years ago

10.1155/2020/1932948

The SLC Family Are Candidate Diagnostic and Prognostic Biomarkers in Clear Cell Renal Cell Carcinoma
Cited by: 20
Author(s): Weiting Kang, Meng Zhang, Qiang Wang, Dawei Gu, Zhilong Huang, Hanbo Wang, Yuzhu Xiang, Qinghua Xia, Zilian Cui, Xunbo Jin
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-020-80093-8

An enriched biosignature of gut microbiota-dependent metabolites characterizes maternal plasma in a mouse model of fetal alcohol spectrum disorder
Cited by: 20
Author(s): Manjot S Virdee, Nipun Saini, Colin D. Kay, Andrew P. Neilson, Sze Ting Cecilia Kwan, Kaylee K. Helfrich, Sandra M. Mooney, Susan Smith
Software Mentions: 4
Published: almost 4 years ago

10.3390/metabo10120518

Using Community Science to Reveal the Global Chemogeography of River Metabolomes
Cited by: 21
Author(s): Vanessa Garayburu‐Caruso, Robert Danczak, James C. Stegen, Lupita Renteria, Marcy L. McCall, Amy Goldman, Rosalie K. Chu, Jason Toyoda, Charles T. Resch, Joshua M. Torgeson, Jacqueline Wells, Sarah Fansler, Swatantar Kumar, Emily B. Graham
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0252231

Abundance estimation for line transect sampling: A comparison of distance sampling and spatial capture-recapture models
Cited by: 6
Author(s): Nathan J. Crum, Lisa C. Neyman, Timothy A. Gowan
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.62456

Salivary and plasmatic oxytocin are not reliable trait markers of the physiology of the oxytocin system in humans
Cited by: 38
Author(s): Daniel Martins, Anthony S. Gabay, Mitul A. Mehta, Yannis Paloyelis
Software Mentions: 4
Published: almost 4 years ago

10.3390/metabo9100210

Plasma Metabolic Signature and Abnormalities in HIV-Infected Individuals on Long-Term Successful Antiretroviral Therapy
Cited by: 41
Author(s): Hemalatha Babu, Maike Sperk, Anoop T. Ambikan, Gladys Rachel, Vinod Kumar Viswanathan, Srikanth Tripathy, Piotr Nowak, Luke Elizabeth Hanna, Ujjwal Neogi
Software Mentions: 4
Published: about 5 years ago

10.3389/fmolb.2021.670893

Low Expression of RILPL2 Predicts Poor Prognosis and Correlates With Immune Infiltration in Endometrial Carcinoma
Cited by: 2
Author(s): Jinhui Liu, Mengting Xu, Zhipeng Wu, Yan Yang, Shuang Yuan, J. Liang, Hongjun Zhu
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0186973

Monthly variations in aneurysmal subarachnoid hemorrhage incidence and mortality: Correlation with weather and pollution
Cited by: 11
Author(s): Myung Hoon Han, Jinhee Kim, Kyu Sun Choi, Choong Hyun Kim, Jae Min Kim, Jin Hwan Cheong, Hyeong Joong Yi, Seon Heui Lee
Software Mentions: 4
Published: about 7 years ago

10.1186/s12936-018-2500-5

malariaAtlas: an R interface to global malariometric data hosted by the Malaria Atlas Project
Cited by: 61
Author(s): Daniel Pfeffer, Timothy C. D. Lucas, D. May, Jonathan Harris, Jennifer Rozier, Katherine A. Twohig, Ursula Dalrymple, Carlos A. Guerra, Catherine L. Moyes, Mike Thorn, Michele Nguyen, Samir Bhatt, Ewan Cameron, Daniel J. Weiss, Rosalind E. Howes, Katherine E. Battle, Harry S. Gibson, Peter W. Gething
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0250510

American crocodiles (Crocodylus acutus) as restoration bioindicators in the Florida Everglades
Cited by: 4
Author(s): Venetia Briggs-González, Mathieu Basille, Michael S. Cherkiss, Frank J. Mazzotti
Software Mentions: 4
Published: over 3 years ago

10.1128/mBio.00588-21

An Infection-Tolerant Mammalian Reservoir for Several Zoonotic Agents Broadly Counters the Inflammatory Effects of Endotoxin
Cited by: 6
Author(s): Gabriela Balderrama-Gutierrez, Ana Milovic, Vanessa J. Cook, M. Nurul Islam, Youwen Zhang, Hippokratis Kiaris, John T. Belisle, A Mortazavi, Alan G. Barbour
Software Mentions: 4
Published: over 3 years ago

10.1038/s41396-018-0343-2

Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi
Cited by: 74
Author(s): Joel A. Boyd, Sean P. Jungbluth, Andy O. Leu, Paul N. Evans, Ben J. Woodcroft, Grayson L. Chadwick, Victoria J. Orphan, Jan P. Amend, Michael S. Rappé, Gene W. Tyson
Software Mentions: 4
Published: almost 6 years ago

10.1016/j.celrep.2020.107748

Chromatin Priming Renders T Cell Tolerance-Associated Genes Sensitive to Activation below the Signaling Threshold for Immune Response Genes
Cited by: 20
Author(s): Sarah L Bevington, Sky T. H. Ng, Graham J. Britton, Peter Keane, David C. Wraith, Peter N. Cockerill
Software Mentions: 4
Published: over 4 years ago

10.3390/ani11072107

Activity Budget Comparisons Using Long-Term Observations of a Group of Bottlenose Dolphins (Tursiops truncatus) under Human Care: Implications for Animal Welfare
Cited by: 9
Author(s): Tim Huettner, Sandra Dollhaeupl, Ralph Simon, Katrin Baumgärtner, Lorenzo von Fersen
Software Mentions: 4
Published: over 3 years ago

10.1186/s12936-018-2520-1

Eave ribbons treated with the spatial repellent, transfluthrin, can effectively protect against indoor-biting and outdoor-biting malaria mosquitoes
Cited by: 44
Author(s): Arnold S. Mmbando, Halfan S. Ngowo, Alex J. Limwagu, Masoud Kilalangongono, Khamis Kifungo, Fredros O. Okumu
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pntd.0009597

Field evaluation of the gut microbiome composition of pre-school and school-aged children in Tha Song Yang, Thailand, following oral MDA for STH infections
Cited by: 8
Author(s): Katharina Stracke, Poom Adisakwattana, Suparat Phuanukoonnon, Tippayarat Yoonuan, Akkarin Poodeepiyasawat, Paron Dekumyoy, Kittipong Chaisiri, Alexandra Roth Schulze, Stephen Wilcox, Harin Karunajeewa, Rebecca J. Traub, Aaron R. Jex
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2021.682886

Beyond Taxonomic Identification: Integration of Ecological Responses to a Soil Bacterial 16S rRNA Gene Database
Cited by: 5
Author(s): Briony Jones, Tim Goodall, Paul B. L. George, Hyun S. Gweon, Jérémy Puissant, Daniel S. Read, Bridget Emmett, David A. Robinson, Davey L. Jones, Robert I. Griffiths
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pntd.0008230

Patients infected with Mycobacterium africanum versus Mycobacterium tuberculosis possess distinct intestinal microbiota
Cited by: 12
Author(s): Sivaranjani Namasivayam, Bassirou Diarra, Seydou Diabaté, Yeya dit Sadio Sarro, A. Koné, Bourahima Kone, Mohamed Tolofoudié, Bocar Baya, M L Diakité, Ousmane Kodio, Keira A. Cohen, Jane L. Holl, Chad Achenbach, S. Chatterjee, Robert L. Murphy, William R. Bishai, Souleymane Diallo, Alan Sher, Mamoudou Maiga
Software Mentions: 4
Published: over 4 years ago

10.3390/insects9040185

Differential Gene Expression in Red Imported Fire Ant (Solenopsis invicta) (Hymenoptera: Formicidae) Larval and Pupal Stages
Cited by: 11
Author(s): Margaret L. Allen, Joshua H. Rhoades, Michael E. Sparks, Michael J. Grodowitz
Software Mentions: 4
Published: almost 6 years ago

10.3390/ani11041175

Is There a Link between Suckling and Manipulation Behavior during Rearing in Pigs?
Cited by: 1
Author(s): Friederike K. Warns, Mehmet Gültaş, Astrid L. van Asten, Tobias Scholz, M. Gerken
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2017.00737

Temporal Genomic Phylogeny Reconstruction Indicates a Geospatial Transmission Path of Salmonella Cerro in the United States and a Clade-Specific Loss of Hydrogen Sulfide Production
Cited by: 27
Author(s): Jasna Kovač, Kevin J. Cummings, Lorraine D. Rodriguez‐Rivera, Laura M. Carroll, Anil J. Thachil
Software Mentions: 4
Published: over 7 years ago

10.15252/emmm.201911659

<scp>FBXL</scp> 4 deficiency increases mitochondrial removal by autophagy
Cited by: 34
Author(s): David Alsina, Oleksandr Lytovchenko, Aleksandra Schab, Ilian Atanassov, F. Schober, Min Jiang, Camilla Koolmeister, Anna Wedell, Robert W. Taylor, Anna Wredenberg, Nils-Göran Larsson
Software Mentions: 4
Published: over 4 years ago

10.1186/s12885-020-6654-5

Temporal changes in gut microbiota profile in children with acute lymphoblastic leukemia prior to commencement-, during-, and post-cessation of chemotherapy
Cited by: 36
Author(s): Ling Ling Chua, Reena Rajasuriar, Yvonne Ai Lian Lim, Yin Ling Woo, P’ng Loke, Hany Ariffin
Software Mentions: 4
Published: over 4 years ago

10.18632/aging.202228

Identification of SCARA3 with potential roles in metabolic disorders
Cited by: 7
Author(s): Hui Peng, Qi Guo, Tian Su, Ye Xiao, Changjun Li, Yan Huang, Xiang‐Hang Luo
Software Mentions: 4
Published: almost 4 years ago

10.1128/JB.00272-19

Isolates from Colonic Spirochetosis in Humans Show High Genomic Divergence and Potential Pathogenic Features but Are Not Detected Using Standard Primers for the Human Microbiota
Cited by: 10
Author(s): Kaisa Thorell, Linn Inganäs, Annette Backhans, Lars Agréus, Åke Öst, Marjorie M. Walker, Nicholas J. Talley, Lars Kjellström, Anna Andréasson, Lars Engstrand
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pgen.1009146

Crumbs and the apical spectrin cytoskeleton regulate R8 cell fate in the Drosophila eye
Cited by: 4
Author(s): Jonathan M. Pojer, Abdul Jabbar Saiful Hilmi, Shu Kondo, Ken Harvey
Software Mentions: 4
Published: over 3 years ago

10.15252/embj.2020106862

Modulation of plant root growth by nitrogen source‐defined regulation of polar auxin transport
Cited by: 50
Author(s): Krisztina Ötvös, Marco Marconi, Andrea Vega, José Antonio O’Brien, Alexander Johnson, Rashed Abualia, Livio Antonielli, Juan Carlos Montesinos, Yuzhou Zhang, Shutang Tan, Candela Cuesta, Christina Artner, Edwige Bouguyon, Alain Gojon, Jiřı́ Friml, Rodrigo A. Gutiérrez, Krzysztof Wabnik, Eva Benková
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12911-016-0374-4

Introduction of digital speech recognition in a specialised outpatient department: a case study
Cited by: 8
Author(s): Christoph Ahlgrim, Oliver Maenner, Manfred W. Baumstark
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0237179

Upper extremity prosthetic selection influences loading of transhumeral osseointegrated systems
Cited by: 3
Author(s): Craig Taylor, Alex J. Drew, Yue Zhang, Yuqing Qiu, Kent N. Bachus, K. Bo Foreman, Heath B. Henninger
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pcbi.1008554

Ten simple rules for navigating the computational aspect of an interdisciplinary PhD
Cited by: 1
Author(s): Sabrina Islam, Christine A. Wells
Software Mentions: 4
Published: almost 4 years ago

10.1111/acel.12928

Increased intron retention is a post‐transcriptional signature associated with progressive aging and Alzheimer’s disease
Cited by: 65
Author(s): Swarnaseetha Adusumalli, Zhen‐Kai Ngian, Wei‐Qi Lin, Touati Benoukraf, Chin‐Tong Ong
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2021.703785

Differences in Gut Microbiome Composition Between Sympatric Wild and Allopatric Laboratory Populations of Omnivorous Cockroaches
Cited by: 11
Author(s): Kara Tinker, Elizabeth A. Ottesen
Software Mentions: 4
Published: over 3 years ago

10.1186/s12915-018-0569-5

Reduced PRC2 function alters male germline epigenetic programming and paternal inheritance
Cited by: 16
Author(s): Jessica M Stringer, Samuel C. Forster, Zhibo Qu, Lexie Prokopuk, Moira K O'Bryan, David K. Gardner, Stefan J. White, David L. Adelson, Patrick Western
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0227530

Soil solution in Swiss forest stands: A 20 year's time series
Cited by: 11
Author(s): Sabine Braun, Simon Tresch, Sabine Augustin
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0242941

Effects of transcranial magnetic stimulation over the left posterior superior temporal gyrus on picture-word interference
Cited by: 2
Author(s): Vitória Piai, Laura Nieberlein, Gesa Hartwigsen
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12915-020-00802-7

A chromosome-level assembly of the cat flea genome uncovers rampant gene duplication and genome size plasticity
Cited by: 25
Author(s): Timothy Driscoll, Victoria I. Verhoeve, Joseph J. Gillespie, J. Spencer Johnston, Mark L. Guillotte, Kristen E. Rennoll-Bankert, M. Sayeedur Rahman, Darren E. Hagen, Christine G. Elsik, Kevin R. Macaluso, Abdu F. Azad
Software Mentions: 4
Published: over 4 years ago

10.1098/rsos.200664

Are post-error adjustments influenced by beliefs in free will? A failure to replicate Rigoni, Wilquin, Brass and Burle, 2013
Cited by: 7
Author(s): Charlotte Eben, Zhang Chen, Emiel Cracco, Marcel Braß, Joël Billieux, Frederick Verbruggen
Software Mentions: 4
Published: about 4 years ago

10.3390/ani11061762

The Equine Faecal Microbiota of Healthy Horses and Ponies in The Netherlands: Impact of Host and Environmental Factors
Cited by: 17
Author(s): M. J. P. Theelen, Roosmarijn E C Luiken, Jaap A. Wagenaar, Marianne Sloet van Oldruitenborgh-Oosterbaan, John W. A. Rossen, Aldert Zomer
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-90607-7

Defining the combined stress response in wild Arachis
Cited by: 12
Author(s): Ana Paula Zotta Mota, Ana Cristina Miranda Brasileiro, Bruna Vidigal, Thais Nicolini Oliveira, Andressa da Cunha Quintana Martins, Mario Alfredo de Passos Saraiva, Ana Cláudia Guerra Araújo, Roberto Coiti Togawa, Maria Fátima Grossi-de-Sá, P. M. Guimarães
Software Mentions: 4
Published: over 3 years ago

10.3390/nu12061869

Omega-3 Eicosapentaenoic Acid (EPA) Rich Extract from the Microalga Nannochloropsis Decreases Cholesterol in Healthy Individuals: A Double-Blind, Randomized, Placebo-Controlled, Three-Month Supplementation Study
Cited by: 23
Author(s): Amanda Rao, David Briskey, Jakob O. Nalley, Eneko Ganuza
Software Mentions: 3
Published: over 4 years ago

10.18632/aging.103455

Efficacy and safety of therapies for EGFR-mutant non-small cell lung cancer with brain metastasis: an evidence-based Bayesian network pooled study of multivariable survival analyses
Cited by: 21
Author(s): Binghao Zhao, Yuekun Wang, Yaning Wang, Wenlin Chen, Lizhou Zhou, Peng Hao Liu, Ziren Kong, Congxin Dai
Software Mentions: 3
Published: over 4 years ago

10.3390/antibiotics9080508

A Quantitative Survey of Bacterial Persistence in the Presence of Antibiotics: Towards Antipersister Antimicrobial Discovery
Cited by: 21
Author(s): J. Enrique Salcedo-Sora, Douglas B. Kell
Software Mentions: 3
Published: over 4 years ago

10.1128/AEM.02662-20

Staphylococcal Enterotoxin Gene Cluster: Prediction of Enterotoxin (SEG and SEI) Production and of the Source of Food Poisoning on the Basis of v Saβ Typing
Cited by: 12
Author(s): Livia Schwendimann, Déborah Merda, Thomas Berger, Sarah Denayer, Cécile Feraudet-Tarisse, Anita Kläui, S. Messio, Michel‐Yves Mistou, Yacine Nia, Jacques‐Antoine Hennekinne, H.U. Graber
Software Mentions: 3
Published: almost 4 years ago

10.1007/s00204-021-03137-6

Alkylation of rabbit muscle creatine kinase surface methionine residues inhibits enzyme activity in vitro
Cited by: 0
Author(s): Dirk Steinritz, Robin Lüling, Markus Siegert, Harald Mückter, Tanja Popp, Peter Reinemer, Thomas Gudermann, Horst Thiermann, Harald John
Software Mentions: 3
Published: over 3 years ago

10.1186/s12859-021-04040-8

A machine learning-based gene signature of response to the novel alkylating agent LP-184 distinguishes its potential tumor indications
Cited by: 6
Author(s): Umesh Kathad, Aditya Kulkarni, Joseph McDermott, Jordan Wegner, Peter Carr, Neha Biyani, Rama Modali, Jaepyeong Cha, Panna Sharma, Kishor Bhatia
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-019-5731-0

G-quadruplexes may determine the landscape of recombination in HSV-1
Cited by: 15
Author(s): Nandhini Saranathan, Banhi Biswas, Anupam Patra, Perumal Vivekanandan
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-017-4019-5

SAIC: an iterative clustering approach for analysis of single cell RNA-seq data
Cited by: 29
Author(s): Lu Yang, Jiancheng Liu, Qiang Lü, Arthur D. Riggs, Xiwei Wu
Software Mentions: 3
Published: about 7 years ago

10.1186/s12864-020-06858-7

An efficient single-cell transcriptomics workflow for microbial eukaryotes benchmarked on Giardia intestinalis cells
Cited by: 6
Author(s): Henning Onsbring, Alexander K. Tice, Brandon T. Barton, Matthew W. Brown, Thijs J. G. Ettema
Software Mentions: 3
Published: over 4 years ago

10.1186/s12864-019-5527-2

Transcriptomic analysis reveals protein homeostasis breakdown in the coral Acropora millepora during hypo-saline stress
Cited by: 27
Author(s): Catalina Aguilar, Jean-Baptiste Raina, Sylvain Forêt, David C. Hayward, Bruno Lapeyre, David G. Bourne, David J. Miller
Software Mentions: 3
Published: almost 6 years ago

10.1186/s12866-021-02228-9

Genomic analysis of group B Streptococcus from milk demonstrates the need for improved biosecurity: a cross-sectional study of pastoralist camels in Kenya
Cited by: 3
Author(s): Dinah Seligsohn, Chiara Crestani, Taya Forde, Erika Chenais, Ruth N. Zadoks
Software Mentions: 3
Published: over 3 years ago

10.1093/bioinformatics/bty089

ShinyKGode: an interactive application for ODE parameter inference using gradient matching
Cited by: 2
Author(s): Joe Wandy, Mu Niu, Diana Giurghita, Rónán Daly, Simon Rogers, Dirk Husmeier
Software Mentions: 3
Published: over 6 years ago

10.1093/bioinformatics/btaa1031

struct: an R/Bioconductor-based framework for standardized metabolomics data analysis and beyond
Cited by: 13
Author(s): Gavin R. Lloyd, Andris Jankevics, Ralf Weber
Software Mentions: 3
Published: almost 4 years ago

10.1007/s10530-016-1199-x

The compensatory potential of increased immigration following intensive American mink population control is diluted by male-biased dispersal
Cited by: 26
Author(s): Matthew K. Oliver, Stuart B. Piertney, Andrzej Zalewski, Yolanda Melero, Xavier Lambin
Software Mentions: 3
Published: over 8 years ago

10.1242/bio.054189

A stem cell based in vitro model of NAFLD enables the analysis of patient specific individual metabolic adaptations in response to a high fat diet and AdipoRon interference
Cited by: 6
Author(s): Nina Graffmann, Audrey Ncube, Soraia Martins, Aurelian Robert Fiszl, Philipp Reuther, Martina Bohndorf, Wasco Wruck, Mathias Beller, Constantin Czekelius, James Adjaye
Software Mentions: 3
Published: almost 5 years ago

10.1042/BSR20200214

Dipeptidyl peptidase like 6 promoter methylation is a potential prognostic biomarker for pancreatic ductal adenocarcinoma
Cited by: 5
Author(s): Xin Zhao, Di Cao, Zhiwei Ren, Zhe Liu, Shaocheng Lv, Jun Zhu, Lixin Li, Ren Lang, Qiang He
Software Mentions: 3
Published: over 4 years ago

10.3390/bios10110169

Yeast-Based Fluorescent Sensors for the Simultaneous Detection of Estrogenic and Androgenic Compounds, Coupled with High-Performance Thin Layer Chromatography
Cited by: 12
Author(s): Liat Moscovici, Carolin Riegraf, Nidaa Abu-Rmailah, Hadas Atias, Dror Shakibai, Sebastian Buchinger, Georg Reifferscheid, Shimshon Belkin
Software Mentions: 3
Published: about 4 years ago

10.1186/s12935-021-02008-5

Prognostic signature composed of transcription factors accurately predicts the prognosis of gastric cancer patients
Cited by: 4
Author(s): Liqun Zhou, Zhiqing Chen, You Wu, Hao Lü, Lin Xin
Software Mentions: 3
Published: over 3 years ago

10.1186/s12935-021-02174-6

Carcinogenic effect of adenylosuccinate lyase (ADSL) in prostate cancer development and progression through the cell cycle pathway
Cited by: 3
Author(s): Jinling Liao, Qiong Song, Jie Li, Kechen Du, Chen Yang, Chunlin Zou, Zengnan Mo
Software Mentions: 3
Published: about 3 years ago

10.26508/lsa.202001000

IL-13 deficiency exacerbates lung damage and impairs epithelial-derived type 2 molecules during nematode infection
Cited by: 11
Author(s): Alistair Chenery, Silvia Rosini, JE Parkinson, Jesuthas Ajendra, Jeremy Herrera, Craig Lawless, Brian H. K. Chan, P’ng Loke, Andrew S. MacDonald, Karl E. Kadler, Tara E. Sutherland, Judith E. Allen
Software Mentions: 3
Published: over 3 years ago

10.3390/metabo9020031

Palmitate and Stearate are Increased in the Plasma in a 6-OHDA Model of Parkinson’s Disease
Cited by: 14
Author(s): AM Shah, Pei Han, Mung-Yee Wong, Raymond Chuen‐Chung Chang, Cristina Legido‐Quigley
Software Mentions: 3
Published: almost 6 years ago

10.1099/mgen.0.000188

A complete high-quality MinION nanopore assembly of an extensively drug-resistant Mycobacterium tuberculosis Beijing lineage strain identifies novel variation in repetitive PE/PPE gene regions
Cited by: 32
Author(s): Arnold Bainomugisa, Tânia Duarte, Evelyn Lavu, Sushil Pandey, Chris Coulter, Ben J. Marais, Lachlan Coin
Software Mentions: 3
Published: over 6 years ago

10.1186/s40168-018-0405-8

Crawling-induced floor dust resuspension affects the microbiota of the infant breathing zone
Cited by: 36
Author(s): Heidi Hyytiäinen, Balamuralikrishna Jayaprakash, Pirkka V. Kirjavainen, Sampo Saari, Rauno Holopainen, Jorma Keskinen, Kaarle Hämeri, Anne Hyvärinen, Brandon E. Boor, Martin Täubel
Software Mentions: 3
Published: almost 7 years ago

10.1186/s40168-017-0264-8

Chemical and pathogen-induced inflammation disrupt the murine intestinal microbiome
Cited by: 93
Author(s): Mikayla A. Borton, Anice Sabag-Daigle, Jikang Wu, Lindsey Solden, Bridget S. O’Banion, Rebecca A. Daly, Richard A. Wolfe, Juan F. González, Vicki H. Wysocki, Brian M. M. Ahmer, Kelly Wrighton
Software Mentions: 3
Published: over 7 years ago

10.1186/s40168-021-01137-3

Gut microbiota regulation of P-glycoprotein in the intestinal epithelium in maintenance of homeostasis
Cited by: 44
Author(s): Sage E. Foley, Christine Tuohy, Merran Dunford, Michael J. Grey, Heidi De Luca, Caitlin Cawley, Rose L. Szabady, Ana Maldonado‐Contreras, Jean Marie Houghton, Doyle V. Ward, Randall J. Mrsny, Beth A. McCormick
Software Mentions: 3
Published: about 3 years ago

10.1016/j.molcel.2019.02.031

MYC Recruits SPT5 to RNA Polymerase II to Promote Processive Transcription Elongation
Cited by: 79
Author(s): Apoorva Baluapuri, Julia Hofstetter, Nevenka Dudvarski Stanković, Theresa Endres, Pranjali Bhandare, Seychelle M. Vos, Bikash Adhikari, Jessica Denise Schwarz, Ashwin Narain, Markus Vogt, Shuangyan Wang, Robert Düster, Lisa Anna Jung, Jens T. Vanselow, Armin Wiegering, Matthias Geyer, Hans Michael Maric, Peter Gallant, Susanne Walz, Andreas Schlösser, Patrick Cramer, Martin Eilers, Elmar Wolf
Software Mentions: 3
Published: over 5 years ago

10.1074/mcp.RA120.002094

Benefits of Collisional Cross Section Assisted Precursor Selection (caps-PASEF) for Cross-linking Mass Spectrometry
Cited by: 31
Author(s): Babara Steigenberger, Henk van den Toorn, E. van der Bijl, Jean‐François Greisch, Oliver Räther, Markus Lubeck, Roland J. Pieters, Albert J. R. Heck, Richard A. Scheltema
Software Mentions: 3
Published: about 4 years ago

10.1074/mcp.O115.049460

A Double-Barrel Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS) System to Quantify 96 Interactomes per Day*
Cited by: 39
Author(s): Fabian Hosp, Richard A. Scheltema, H. Christian Eberl, Nils A. Kulak, Eva C. Keilhauer, Korbinian Mayr, Matthias Mann
Software Mentions: 3
Published: over 9 years ago

10.3390/molecules25143107

X6: A Novel Antibody for Potential Use in Gluten Quantification
Cited by: 4
Author(s): Aleksandrina Shatalova, И С Шаталов, Yuri Lebedin
Software Mentions: 3
Published: over 4 years ago

10.3390/molecules26020310

Analysis and Authentication of Avocado Oil Using High Resolution NMR Spectroscopy
Cited by: 17
Author(s): Fang Tang, Hilary S. Green, Selina C. Wang, Emmanuel Hatzakis
Software Mentions: 3
Published: almost 4 years ago

10.1002/1878-0261.12642

Deciphering tissue‐based proteome signatures revealed novel subtyping and prognostic markers for thymic epithelial tumors
Cited by: 7
Author(s): Xin Ku, Qiangling Sun, Lei Zhu, Zhenyu Gu, Yuchen Han, Ning Xu, Chen Meng, Xiaohua Yang, Wei Yan, Wentao Fang
Software Mentions: 3
Published: almost 5 years ago

10.3390/vaccines9070719

Signatures of the Venezuelan Humanitarian Crisis in the First Wave of COVID-19: Fuel Shortages and Border Migration
Cited by: 8
Author(s): Margarita Lampo, Juan V Hernández-Villena, Jaime Cascante, María F. Vincenti-González, David A. Forero‐Peña, Maikell Segovia, Katie Hampson, Julio Castro, María Eugenia Grillet
Software Mentions: 3
Published: over 3 years ago

10.1093/ve/veaa071

Large-scale survey reveals pervasiveness and potential function of endogenous geminiviral sequences in plants
Cited by: 15
Author(s): Vikas Sharma, Pierre Lefeuvre, Philippe Roumagnac, Denis Filloux, Pierre‐Yves Teycheney, Darren P. Martin, Florian Maumus
Software Mentions: 3
Published: over 4 years ago

10.3390/v11050481

Attenuation of Bluetongue Virus (BTV) in an in ovo Model Is Related to the Changes of Viral Genetic Diversity of Cell-Culture Passaged BTV
Cited by: 4
Author(s): Fabian Z. X. Lean, Matthew J. Neave, John R. White, Jean Payne, Teresa Eastwood, Jemma Bergfeld, Antonio Di Rubbo, Vittoria Stevens, Kelly R. Davies, Joanne M. Devlin, David T. Williams, John Bingham
Software Mentions: 3
Published: over 5 years ago

10.3390/v13071291

Fishing for the Virome of Tropical Tuna
Cited by: 5
Author(s): Elsa Gadoin, Christelle Desnues, Sonia Monteil-Bouchard, Thierry Bouvier, Jean‐Christophe Auguet, Emmanuelle Roque D’Orbcastel, Yvan Bettarel
Software Mentions: 3
Published: over 3 years ago

10.12688/wellcomeopenres.15191.1

Raincloud plots: a multi-platform tool for robust data visualization
Cited by: 782
Author(s): Micah Allen, Davide Poggiali, Kirstie Whitaker, Tom R. Marshall, Rogier A. Kievit
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.5705

Variations in the reproductive strategies of three populations of Phrynocephalus helioscopus in China
Cited by: 3
Author(s): Tao Liang, Zhengxin Lu, Wenfeng He, Xiao Li-rong, Lei Shi
Software Mentions: 3
Published: about 6 years ago

10.3390/pharmaceutics13081191

External Evaluation of Population Pharmacokinetic Models and Bayes-Based Dosing of Infliximab
Cited by: 10
Author(s): Céline Konecki, Catherine Féliu, Yoann Cazaubon, Delphine Giusti, Marcelle Tonye‐Libyh, Hédia Brixi, Guillaume Cadiot, A Biron, Zoubir Djerada
Software Mentions: 3
Published: over 3 years ago

10.14814/phy2.13893

Exercise-induced mitochondrial biogenesis coincides with the expression of mitochondrial translation factors in murine skeletal muscle
Cited by: 19
Author(s): Takumi Yokokawa, Kohei Kido, Tadashi Suga, Tadao Isaka, Tatsuya Hayashi, Satoshi Fujita
Software Mentions: 3
Published: about 6 years ago

10.1111/pbi.13092

Activity‐based proteomics reveals nine target proteases for the recombinant protein‐stabilizing inhibitor Sl <scp>CYS</scp> 8 in Nicotiana benthamiana
Cited by: 12
Author(s): Philippe V. Jutras, Friederike Grosse‐Holz, Farnusch Kaschani, Markus Kaiser, Dominique Michaud, Renier A. L. van der Hoorn
Software Mentions: 3
Published: over 5 years ago

10.1111/pbi.12916

Three unrelated protease inhibitors enhance accumulation of pharmaceutical recombinant proteins in Nicotiana benthamiana
Cited by: 53
Author(s): Friederike Grosse‐Holz, Luisa Madeira, Muhammad Awais Zahid, Molly Songer, Jiorgos Kourelis, Mary Fesenko, Sabrina Ninck, Farnusch Kaschani, Markus Kaiser, Renier A. L. van der Hoorn
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pcbi.1008263

A transcriptome-based classifier to determine molecular subtypes in medulloblastoma
Cited by: 5
Author(s): Komal S. Rathi, Sherjeel Arif, Mateusz Koptyra, Ammar S. Naqvi, Deanne Taylor, Phillip B. Storm, Adam Resnick, Jo Lynne Rokita, Pichai Raman
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pgen.1007681

Coronary artery disease genes SMAD3 and TCF21 promote opposing interactive genetic programs that regulate smooth muscle cell differentiation and disease risk
Cited by: 37
Author(s): Dharini Iyer, Quanyi Zhao, Robert Wirka, Ameay V. Naravane, Trieu Nguyen, Boxiang Liu, Manabu Nagao, Paul Cheng, Clint L. Miller, Juyong Brian Kim, Milos Pjanic, Thomas Quertermous
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pgen.1008493

Linking high GC content to the repair of double strand breaks in prokaryotic genomes
Cited by: 38
Author(s): Jake L. Weissman, William F. Fagan, Philip L. F. Johnson
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pntd.0009259

Climatic and socio-economic factors supporting the co-circulation of dengue, Zika and chikungunya in three different ecosystems in Colombia
Cited by: 26
Author(s): Jasmine Morgan, Clare Strode, J. Enrique Salcedo-Sora
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pntd.0009813

Morphological, molecular and MALDI-TOF MS identification of ticks and tick-associated pathogens in Vietnam
Cited by: 9
Author(s): Ly Na Huynh, Adama Zan Diarra, Quang Luan Pham, Nhiem Le-Viet, Jean-Michel Bérenger, Van Hoang Ho, Xuan Quang Nguyen, Philippe Parola
Software Mentions: 3
Published: about 3 years ago

10.1371/journal.pntd.0008343

Movement of St. Louis encephalitis virus in the Western United States, 2014- 2018
Cited by: 8
Author(s): Daniele M. Swetnam, Jackson B. Stuart, Katherine I. Young, Payal D. Maharaj, Ying Fang, Sandra Garcia, Christopher M. Barker, Kirk Smith, Marvin S. Godsey, Harry M. Savage, Vonnita Barton, Bethany G. Bolling, Nisha K. Duggal, Aaron C. Brault, Lark L. Coffey
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0245439

Impact of integrating objective structured clinical examination into academic student assessment: Large-scale experience in a French medical school
Cited by: 10
Author(s): Alexandre Matet, Ludovic Fournel, F. Gaillard, Laurence Amar, Jean‐Benoît Arlet, Stéphanie Baron, Anne‐Sophie Bats, Céline Buffel du Vaure, Caroline Charlier, Victoire de Lastours, Albert Faye, Eve Jablon, Natacha Kadlub, Julien Leguen, David Lebeaux, Alexandre Malmartel, Tristan Mirault, Benjamin Planquette, Alexis Régent, Jean-Laurent Thébault, Alexy Tran-Dinh, Alexandre Nuzzo, Guillaume Turc, Gérard Friedlander, Philippe Ruszniewski, Cécile Badoual, Brigitte Ranque, Mehdi Oualha, Marie Courbebaisse
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0134894

Inference by Exclusion in Goffin Cockatoos (Cacatua goffini)
Cited by: 24
Author(s): Mark O’Hara, Alice M. I. Auersperg, Thomas Bugnyar, Ludwig Huber
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pone.0240250

Multicenter analysis of sputum microbiota in tuberculosis patients
Cited by: 7
Author(s): Claudia Sala, Andrej Benjak, Delia Goletti, Sayera Banu, Jesica Mazza-Stadler, Katia Jaton, Philippe Busso, Sille Remm, Marion Leleu, Jacques Rougemont, Fabrizio Palmieri, Gilda Cuzzi, Ornella Butera, Valentina Vanini, Shahjahan Kabir, S. M. Mazidur Rahman, Laurent Nicod, Stewart T. Cole
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0238372

Disadvantages in preparing and publishing scientific papers caused by the dominance of the English language in science: The case of Colombian researchers in biological sciences
Cited by: 131
Author(s): Valeria Ramírez‐Castañeda
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0249375

MiRNA-107 enhances the malignant progression of pancreatic cancer by targeting TGFBR3
Cited by: 11
Author(s): Tingke Tian, Qingmei Yang, Cuijuan Zhang, Xiaokun Li, Jiancheng Cheng
Software Mentions: 3
Published: over 3 years ago

Projects: pypi: ggplot

Papers Mentioning ggplot 796