pypi: ggplot | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0220953

COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems
Cited by: 67
Author(s): Mehrdad Hajibabaei, Teresita M. Porter, Michael Wright, Josip Rudar
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-020-79835-5

Local knowledge as a tool for prospecting wild food plants: experiences in northeastern Brazil
Cited by: 11
Author(s): Patrícia Muniz de Medeiros, Gabriela Maria Cota dos Santos, Déborah Monteiro Barbosa, Laílson César Andrade Gomes, Élida Monique da Costa Santos, Rafael Ricardo Vasconcelos da Silva
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0255139

De novo sequencing and analysis of the transcriptome of two highbush blueberry (Vaccinium corymbosum L.) cultivars ‘Bluecrop’ and ‘Legacy’ at harvest and following post-harvest storage
Cited by: 2
Author(s): María Cárcamo de la Concepción, Daniel J. Sargent, Nada Šurbanovski, Richard Colgan, Marco Moretto
Software Mentions: 6
Published: almost 3 years ago

10.1038/s41598-021-95648-6

Four consecutive yearly point-prevalence studies in Wales indicate lack of improvement in sepsis care on the wards
Cited by: 1
Author(s): Maja Kopczynska, Harry Unwin, Richard Pugh, Ben Sharif, Thomas Chandy, Daniel Davies, Matthew E. Shield, David Purchase, Samuel C. Tilley, Arwel T Poacher, Lewis Oliva, Sam Willis, Isabelle Ray, John Ng C. Hui, Bethany Payne, Eilis Frances Wardle, Fiona Andrew, Hei Man Priscilla Chan, Jack Barrington, Jay Hale, Joanna Hawkins, Jess K. Nicholas, Lara E. Wirt, Lowri Hughes Thomas, Megan Walker, Myat P. Pan, Tallulah Ray, Umair Asim, Victoria Maidman, Zeid Atiyah, Zain M. Nasser, Zhao Xuan Tan, Laura Tan, Tamás Szakmány
Software Mentions: 6
Published: almost 3 years ago

10.1002/ece3.3272

How shrub encroachment under climate change could threaten pollination services for alpine wildflowers: A case study using the alpine skypilot,<i>Polemonium viscosum</i>
Cited by: 8
Author(s): Jessica A. Kettenbach, Nicole E. Miller‐Struttmann, Zoë Moffett, Candace Galen
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pntd.0009434

Putative pathogen-selected polymorphisms in the PKLR gene are associated with mycobacterial susceptibility in Brazilian and African populations
Cited by: 0
Author(s): Ohanna Cavalcanti de Lima Bezerra, Lucia Elena Alvarado-Arnez, Nédio Mabunda, Graça Salomé, Amina de Sousa, Fernanda S. G. Kehdy, Carolinne de Sales Marques, Fernanda Saloum de Neves Manta, Rafaela Mota Andrade, Laís Pereira Ferreira, Thyago Leal-Calvo, Cynthia Chester Cardoso, Kelly Nunes, Mateus H. Gouveia, Sam M. Mbulaiteve, Edward D. Yeboah, Ann W. Hsing, Ana Carla Pereira Latini, André Luiz Leturiondo, Fabíola da Costa Rodrigues, Ariani Batista Noronha, Cynthia de Oliveira Ferreira, Carolina Talhari, Jamile Leão Rêgo, Léa Castellucci, Eduardo Tarazona‐Santos, E.F. Carvalho, Diogo Meyer, Roberta Olmo Pinheiro, Ilesh Jani, Antônio Guilherme Pacheco, Milton Ozório Moraes
Software Mentions: 5
Published: over 2 years ago

10.1038/s41598-019-56386-y

Investigating a Plasmodium falciparum erythrocyte invasion phenotype switch at the whole transcriptome level
Cited by: 11
Author(s): Prince B. Nyarko, Sarah J. Tarr, Yaw Aniweh, Lindsay B. Stewart, David J. Conway, Gordon A. Awandare
Software Mentions: 5
Published: over 4 years ago

10.1186/s12864-020-6558-4

Genome-wide association study (GWAS) reveals genetic loci of lead (Pb) tolerance during seedling establishment in rapeseed (Brassica napus L.)
Cited by: 10
Author(s): Fugui Zhang, Xin Xiao, Kun Xu, Xi Cheng, Ting Xie, Jihong Hu, Xiaoming Wu
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2019.01395

Thermal Niche Differentiation in the Benthic Diatom Cylindrotheca closterium (Bacillariophyceae) Complex
Cited by: 16
Author(s): Willem Stock, Bart Vanelslander, Franziska Rüdiger, Koen Sabbe, Wim Vyverman, Ulf Karsten
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-020-66599-1

Metabolic reprogramming related to whole-chromosome instability in models for Hürthle cell carcinoma
Cited by: 8
Author(s): Ruben D. Addie, Sarantos Kostidis, Willem E. Corver, Jan Oosting, Sepideh Aminzadeh-Gohari, René G. Feichtinger, Barbara Kofler, Mehtap Derya Aydemirli, Martin Giera, Hans Morreau
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-018-19939-1

Acute effects of air pollution on respiratory disease mortalities and outpatients in Southeastern China
Cited by: 46
Author(s): Zhe Mo, Qiang Fu, Lifang Zhang, Danni Lyu, Guangming Mao, Lizhi Wu, Pingwei Xu, Zhifang Wang, Xuejiao Pan, Zhijian Chen, Xiaofeng Wang, Xiaoming Lou
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-018-25015-5

Metabolic systems analysis of LPS induced endothelial dysfunction applied to sepsis patient stratification
Cited by: 22
Author(s): Sarah McGarrity, Ósk Anuforo, Haraldur Halldórsson, Andreas Bergmann, Skarphéđinn Halldórsson, Sirus Palsson, H Henriksen, Pär I. Johansson, Óttar Rolfsson
Software Mentions: 5
Published: about 6 years ago

10.1038/srep37393

Changes of bivalent chromatin coincide with increased expression of developmental genes in cancer
Cited by: 84
Author(s): Stephan H. Bernhart, Helene Kretzmer, Lesca M. Holdt, Frank Jühling, Ole Ammerpohl, Anke Bergmann, Bernd H. Northoff, Gero Doose, Reiner Siebert, Peter F. Stadler, Steve Hoffmann
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-017-08892-0

Development and assessment of a lysophospholipid-based deep learning model to discriminate geographical origins of white rice
Cited by: 14
Author(s): Nguyen Phuoc Long, Dong Kyu Lim, Changyeun Mo, Gi‐Young Kim, Sung Won Kwon
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-017-14768-0

Genome-wide analysis reveals differential selection involved with copy number variation in diverse Chinese Cattle
Cited by: 17
Author(s): Yang Liu, Lingyang Xu, Bo Zhu, Hong Niu, Wengang Zhang, Jianyin Miao, Xiaowen Shi, Ming Zhang, Yan Chen, Lupei Zhang, Xue Gao, Huijiang Gao, Li Li, George E. Liu, Junya Li
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-019-40831-z

Preoperative Prediction of Axillary Lymph Node Metastasis in Breast Cancer Using Mammography-Based Radiomics Method
Cited by: 49
Author(s): Jingbo Yang, Tao Wang, Lifeng Yang, Yübo Wang, Hongmei Li, Xiaobo Zhou, Weiling Zhao, Junchan Ren, Xiaoyong Li, Jie Tian, Luqi Huang
Software Mentions: 5
Published: about 5 years ago

10.1186/s13068-021-01915-z

Physiological and transcriptional response to drought stress among bioenergy grass Miscanthus species
Cited by: 10
Author(s): Jose J De Vega, Abel Teshome, Manfred Klaas, Jim Grant, John Finnan, Susanne Barth
Software Mentions: 5
Published: about 3 years ago

10.3389/fmicb.2020.562775

Response of Soil Fungal Community to Drought-Resistant Ea-DREB2B Transgenic Sugarcane
Cited by: 7
Author(s): Xue Zhao, Qi Liu, Sasa Xie, Yuke Jiang, Hao Yang, Ziting Wang, Muqing Zhang
Software Mentions: 5
Published: over 3 years ago

10.1002/bit.25990

Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time
Cited by: 109
Author(s): Julia Feichtinger, Inmaculada Hernández, Christoph Fischer, Michael Hanscho, Norbert Auer, Matthias Hackl, Vaibhav Jadhav, Martina Baumann, Peter M. Krempl, Christian Schmidl, Matthias Farlik, Michael Schuster, Angelika Merkel, Andreas Sommer, Simon Heath, Daniel Rico, Christoph Bock, Gerhard Thallinger, Nicole Borth
Software Mentions: 5
Published: about 8 years ago

10.3390/jcm9010161

The Serum Cell-Free microRNA Expression Profile in MCTD, SLE, SSc, and RA Patients
Cited by: 16
Author(s): Barbara Stypińska, Anna Wajda, Ewa Walczuk, Marzena Olesińska, Aleksandra Lewandowska, Marcela Walczyk, Agnieszka Paradowska‐Gorycka
Software Mentions: 5
Published: over 4 years ago

10.1042/BSR20203231

Identification of an autophagy-related gene signature predicting overall survival for hepatocellular carcinoma
Cited by: 5
Author(s): Wenfang Xu, Wenxiu Guo, Ping Lü, Ding Ma, Lei Liu, Fudong Yu
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2020.00704

Effects of Drought-Tolerant Ea-DREB2B Transgenic Sugarcane on Bacterial Communities in Soil
Cited by: 18
Author(s): Xue Zhao, Yuke Jiang, Qi Liu, Hao Yang, Ziting Wang, Muqing Zhang
Software Mentions: 5
Published: about 4 years ago

10.7717/peerj.10868

Genome size versus geographic range size in birds
Cited by: 3
Author(s): Beata Grzywacz, Piotr Skórka
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2020.00308

Characterization of the Gut Microbiota of the Antarctic Heart Urchin (Spatangoida) Abatus agassizii
Cited by: 13
Author(s): Guillaume Schwob, Léa Cabrol, Élie Poulin, Julieta Orlando
Software Mentions: 5
Published: about 4 years ago

10.7717/peerj.7807

Differences in tail feather growth rate in storm-petrels breeding in the Northern and Southern hemisphere: a ptilochronological approach
Cited by: 1
Author(s): Anne N. M. A. Ausems, Katarzyna Wojczulanis‐Jakubas, Dariusz Jakubas
Software Mentions: 5
Published: over 4 years ago

10.1111/cpr.13117

Prognostic and predictive role of a metabolic rate‐limiting enzyme signature in hepatocellular carcinoma
Cited by: 9
Author(s): Zhangding Wang, Yao Fu, Anliang Xia, Chen Chen, Jiamu Qu, Guifang Xu, Xiaoping Zou, Qiang Wang, Shouyu Wang
Software Mentions: 5
Published: over 2 years ago

10.3390/nu12092800

Whole Blueberry and Isolated Polyphenol-Rich Fractions Modulate Specific Gut Microbes in an In Vitro Colon Model and in a Pilot Study in Human Consumers
Cited by: 25
Author(s): Alexandra Ntemiri, Tarini Shankar Ghosh, Molly E. Gheller, Tam Tran, Jamie Blum, Paola Pellanda, Klára Vlčková, Marta C Neto, Amy B. Howell, Anna Thalacker‐Mercer, Paul W. O’Toole
Software Mentions: 5
Published: over 3 years ago

10.18632/aging.203081

Pan-cancer analysis of the prognostic value of C12orf75 based on data mining
Cited by: 3
Author(s): Guangzhen Cai, Guan-Nan Jin, Jintai Liang, Ganxun Li, Xiaoping Chen, Huifang Liang, Zhao Ding
Software Mentions: 5
Published: almost 3 years ago

10.1186/s12964-019-0326-6

Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells
Cited by: 11
Author(s): Jaime Santo‐Domingo, Antonio Núñez Galindo, Ornella Cominetti, Umberto De Marchi, Pedro R. Cutillas, Loïc Dayon, Andreas Wiederkehr
Software Mentions: 5
Published: about 5 years ago

10.1155/2020/7082408

Identification and Validation of an Individualized EMT-Related Prognostic Risk Score Formula in Gastric Adenocarcinoma Patients
Cited by: 13
Author(s): Deyu Zhang, Siran Zhou, Bing-Rong Liu
Software Mentions: 5
Published: about 4 years ago

10.1186/s13054-019-2358-0

39th International Symposium on Intensive Care and Emergency Medicine
Cited by: 7
Author(s): Giuseppe Carrà, Francesca Marta Elli, Larissa R. Brunner Huber, Fabián Güiza, Bogdan-Andrei Ianosi, Rass, Bart Depreitere, G Meyfrodidt, Giuseppe Citerio, Raimund Helbok
Software Mentions: 5
Published: about 5 years ago

10.3389/fgene.2021.707713

Identification of Candidate Blood mRNA Biomarkers in Intracerebral Hemorrhage Using Integrated Microarray and Weighted Gene Co-expression Network Analysis
Cited by: 3
Author(s): Feng Jin, Lei Li, Yuehan Hao, Ling Tang, Yuye Wang, Zhiyi He
Software Mentions: 5
Published: almost 3 years ago

10.3390/biology10050405

Human Endogenous Retroviruses (HERVs) and Mammalian Apparent LTRs Retrotransposons (MaLRs) Are Dynamically Modulated in Different Stages of Immunity
Cited by: 6
Author(s): Maria Paola Pisano, Nicole Grandi
Software Mentions: 5
Published: about 3 years ago

10.12688/wellcomeopenres.16374.2

MendelianRandomization v0.5.0: updates to an R package for performing Mendelian randomization analyses using summarized data
Cited by: 55
Author(s): Jim R. Broadbent, Christopher N. Foley, Andrew J. Grant, Amy M. Mason, James R Staley, Stephen Burgess
Software Mentions: 5
Published: over 3 years ago

10.3390/cancers12082261

MiR-302b as a Combinatorial Therapeutic Approach to Improve Cisplatin Chemotherapy Efficacy in Human Triple-Negative Breast Cancer
Cited by: 12
Author(s): Alessandra Cataldo, Sandra Romero-Córdoba, Ilaria Plantamura, Giulia Cosentino, Alfredo Hidalgo‐Miranda, Elda Tagliabue, Marilena V. Iorio
Software Mentions: 5
Published: almost 4 years ago

10.1002/hbm.24941

Network failures: When incentives trigger impulsive responses
Cited by: 6
Author(s): Peter Zhukovsky, Sharon Morein‐Zamir, Chun Meng, Jeffrey W. Dalley, Karen D. Ersche
Software Mentions: 5
Published: about 4 years ago

10.1093/bioinformatics/btx364

UpSetR: an R package for the visualization of intersecting sets and their properties
Cited by: 1,808
Author(s): Jake R. Conway, Alexander Lex, Nils Gehlenborg
Software Mentions: 5
Published: almost 7 years ago

10.1093/gbe/evz246

Reprogramming of retrotransposon activity during speciation of the genus Citrus
Cited by: 2
Author(s): Carles Borredà, Estela Pérez-Román, Victoria Ibáñez, Javier Terol, Manuel Talón
Software Mentions: 5
Published: over 4 years ago

10.3390/ijms20092202

Dynamic Transcriptome Changes Related to Oil Accumulation in Developing Soybean Seeds
Cited by: 22
Author(s): Songnan Yang, Long Miao, Jianbo He, Kai Zhang, Yan Li, Junyi Gai
Software Mentions: 5
Published: about 5 years ago

10.3390/genes12020292

Comparative Mitogenomics in Hyalella (Amphipoda: Crustacea)
Cited by: 5
Author(s): Francesco Zapelloni, José A. Jurado‐Rivera, Damià Jaume, Carlos Juan, Joan Pons
Software Mentions: 5
Published: about 3 years ago

10.1093/bioinformatics/bty441

ggCyto: next generation open-source visualization software for cytometry
Cited by: 55
Author(s): Phu T. Van, Wenxin Jiang, Raphaël Gottardo, Greg Finak
Software Mentions: 5
Published: almost 6 years ago

10.3389/fcell.2021.730240

Multi-Omics Analysis of the Anti-tumor Synergistic Mechanism and Potential Application of Immune Checkpoint Blockade Combined With Lenvatinib
Cited by: 4
Author(s): Yuting Lu, Juebin Jin, Qian Du, Min Hu, Yuhan Wei, Miao Wang, Hongzhong Li, Li Qin
Software Mentions: 5
Published: over 2 years ago

10.1007/s00395-021-00887-3

LncRNA LncHrt preserves cardiac metabolic homeostasis and heart function by modulating the LKB1-AMPK signaling pathway
Cited by: 24
Author(s): Ning Liu, Masaharu Kataoka, Yingchao Wang, Linbin Pu, Xiaoxuan Dong, Xuyang Fu, Feng Zhang, Feng Gao, Tian Liang, Jianqiu Pei, Changchen Xiao, Qiongzi Qiu, TingTing Hong, Qiming Chen, Jing Zhao, Long‐Guan Zhu, Junhua He, Xiaoyun Hu, Yu Nie, Wei Zhu, Hong Yu, Douglas B. Cowan, Xinyang Hu, Jianan Wang, Dazhi Wang, Jinghai Chen
Software Mentions: 5
Published: almost 3 years ago

10.1111/mec.13769

The genetic architecture of resistance to virus infection in<i>Drosophila</i>
Cited by: 50
Author(s): Rodrigo Cogni, Chuan Cao, Jonathan P. Day, Calum Bridson, Francis M. Jiggins
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0257564

Tree species identity and composition shape the epiphytic lichen community of structurally simple boreal forests over vast areas
Cited by: 7
Author(s): Julian Klein, Matthew Low, Göran Thor, Jörgen Sjögren, Eva Lindberg, Sönke Eggers
Software Mentions: 5
Published: over 2 years ago

10.1093/hmg/ddv203

Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans
Cited by: 65
Author(s): Ali Amin Al Olama, Tokhir Dadaev, Dennis J. Hazelett, Qiuyan Li, Daniel Leongamornlert, Ed Saunders, Sarah H. Stephens, Clara Cieza-Borrella, Ian Whitmore, Sara Benlloch Garcia, Graham G. Giles, Melissa C. Southey, Liesel M. FitzGerald, Henrik Grönberg, Fredrik Wiklund, Markus Aly, Brian E. Henderson, Fredrick Schumacher, Christopher A. Haiman, Johanna Schleutker, Tiina Wahlfors, Teuvo L.J. Tammela, Børge G. Nordestgaard, Tim Key, Ruth C. Travis, David E. Neal, Jenny Donovan, Freddie C. Hamdy, Paul D.P. Pharoah, Nora Pashayan, Kay‐Tee Khaw, Janet L. Stanford, Stephen N. Thibodeau, Shannon K. McDonnell, Daniel J. Schaid, Christiane Maier, Walther Vogel, Manuel Luedeke, Kathleen Herkommer, Adam S. Kibel, Cezary Cybulski, Dominika Wokołorczyk, Wojciech Kluźniak, Lisa A. Cannon‐Albright, Hermann Brenner, Katja Butterbach, Volker Arndt, Jong Y. Park, Thomas A. Sellers, Hui‐Yi Lin, Chavdar Slavov, Radka Kaneva, Vanio Mitev, Jyotsna Batra, Judith A. Clements, Amanda B. Spurdle, Manuel R. Teixeira, Paula Paulo, Sofia Maia, Hardev Pandha, Agnieszka Michael, Andrzej M. Kierzek, Koveela Govindasami, Michelle Guy, Artitaya Lophatonanon, Kenneth Muir, Ana Viñuela, Andrew Anand Brown, Cogs-Cruk Gwas-Ellipse Initiative, Mathew Freedman, David V. Conti, Douglas F. Easton, Gerhard A. Coetzee, Rosalind Eeles, Zsofia Kote‐Jarai
Software Mentions: 5
Published: almost 9 years ago

10.3390/microorganisms9030606

Disproportionate CH4 Sink Strength from an Endemic, Sub-Alpine Australian Soil Microbial Community
Cited by: 1
Author(s): Marshall D. McDaniel, Marcela Hernández, Marc G. Dumont, Lachlan J. Ingram, Mark A. Adams
Software Mentions: 5
Published: about 3 years ago

10.3390/microorganisms9091861

Can Bacterial Endophytes Be Used as a Promising Bio-Inoculant for the Mitigation of Salinity Stress in Crop Plants?—A Global Meta-Analysis of the Last Decade (2011–2020)
Cited by: 20
Author(s): Muhammad Aammar Tufail, Ana Bejarano, Awais Shakoor, Naeem Akhtar, Muhammad Saleem Arif, Afzal Ahmed Dar, Taimoor Hassan Farooq, I. Pertot, Gerardo Puopolo
Software Mentions: 5
Published: over 2 years ago

10.3390/microorganisms9071427

How Do Polymer Coatings Affect the Growth and Bacterial Population of a Biofilm Formed by Total Human Salivary Bacteria?—A Study by 16S-RNA Sequencing
Cited by: 3
Author(s): Ali Al‐Ahmad, Kira Wollensak, Sibylle J. Rau, Diana Lorena Guevara Solarte, Stefan Paschke, Karen Lienkamp, Ori Staszewski
Software Mentions: 5
Published: almost 3 years ago

10.1186/s41606-021-00065-3

Palmitoylethanolamide for sleep disturbance. A double-blind, randomised, placebo-controlled interventional study
Cited by: 5
Author(s): Amanda Rao, Phillippa Ebelt, Alistair R. Mallard, David Briskey
Software Mentions: 5
Published: over 2 years ago

10.7150/thno.59196

Microbial and genetic-based framework identifies drug targets in inflammatory bowel disease
Cited by: 10
Author(s): Zhihan Wang, Kai Guo, Pan Gao, Qinqin Pu, Ping Lin, Shugang Qin, Na Xie, Junguk Hur, Changlong Li, Canhua Huang, Min Wu
Software Mentions: 5
Published: over 3 years ago

10.1186/s12870-021-03151-x

Derived woodiness and annual habit evolved in African umbellifers as alternative solutions for coping with drought
Cited by: 2
Author(s): Kamil E. Frankiewicz, Łukasz Banasiak, Alexei A. Oskolski, A.R. Magee, Mohammad Alsarraf, Paulina Trzeciak, Krzysztof Spalik
Software Mentions: 5
Published: over 2 years ago

10.1371/journal.pone.0239486

BioPETsurv: Methodology and open source software to evaluate biomarkers for prognostic enrichment of time-to-event clinical trials
Cited by: 3
Author(s): Siyuan Cheng, Kathleen F. Kerr, Heather Thiessen-Philbrook, Steven G. Coca, Chirag R. Parikh
Software Mentions: 5
Published: over 3 years ago

10.3389/fphar.2020.01238

The Inflammasome Signaling Proteins ASC and IL-18 as Biomarkers of Psoriasis
Cited by: 37
Author(s): Mahtab Forouzandeh, Jaren Besen, Robert W. Keane, Juan Pablo de Rivero Vaccari
Software Mentions: 5
Published: almost 4 years ago

10.3389/fonc.2020.00368

Expression Profile and Prognostic Values of HOXA Family Members in Laryngeal Squamous Cell Cancer
Cited by: 20
Author(s): Jinyun Li, Meng Ye, Chongchang Zhou
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-021-90380-7

Gut microbiota composition in health-care facility-and community-onset diarrheic patients with Clostridioides difficile infection
Cited by: 6
Author(s): Giovanny Herrera, Laura Vega, Manuel A. Patarroyo, Juan David Ramírez, Marina Muñoz
Software Mentions: 5
Published: almost 3 years ago

10.1371/journal.pone.0230284

Lake-depth related pattern of genetic and morphological diatom diversity in boreal Lake Bolshoe Toko, Eastern Siberia
Cited by: 15
Author(s): Kathleen R. Stoof‐Leichsenring, Katharina Dulias, Boris K. Biskaborn, Ludmila A Pestryakova, Ulrike Herzschuh
Software Mentions: 5
Published: about 4 years ago

10.3389/fphar.2020.620811

Higher ETV5 Expression Associates With Poor 5-Florouracil-Based Adjuvant Therapy Response in Colon Cancer
Cited by: 4
Author(s): Anil Giri
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0255436

Global distribution of sporadic sapovirus infections: A systematic review and meta-analysis
Cited by: 8
Author(s): Marta Diez‐Valcarce, Anita Kambhampati, Laura Calderwood, Aron J. Hall, Sara Mirza, Jan Vinjé
Software Mentions: 5
Published: almost 3 years ago

10.3389/fmicb.2018.02096

Abundant and Rare Microbial Biospheres Respond Differently to Environmental and Spatial Factors in Tibetan Hot Springs
Cited by: 32
Author(s): Yanmin Zhang, Geng Wu, Hongchen Jiang, Jian Yang, Weiyu She, Inayat Mustafa Khan, Wenjun Li
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0255391

Not just trash birds: Quantifying avian diversity at landfills using community science data
Cited by: 9
Author(s): Zachary J. Arnold, Seth J. Wenger, Richard J. Hall
Software Mentions: 5
Published: over 2 years ago

10.1038/s41598-020-80190-8

Speech adapts to differences in dentition within and across populations
Cited by: 8
Author(s): Caleb Everett, Sihan Chen
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-80990-6

Metagenomics analysis of bacteriophages and antimicrobial resistance from global urban sewage
Cited by: 24
Author(s): Josephine E. S. Strange, Pimlapas Leekitcharoenphon, Frederik Duus Møller, Frank Møller Aarestrup
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0256268

Investigation of population-based mental health staffing and efficiency-based mental health productivity using an information-theoretic approach
Cited by: 5
Author(s): Matthew Tyler Boden, Clifford A. Smith, Jodie A. Trafton
Software Mentions: 5
Published: almost 3 years ago

10.3390/cancers12010092

Human Tumor–Derived Matrix Improves the Predictability of Head and Neck Cancer Drug Testing
Cited by: 17
Author(s): Katja Tuomainen, Ahmed Al‐Samadi, Swapnil Potdar, Laura Turunen, Minna Turunen, Piia-Riitta Karhemo, Paula Bergman, Maija Risteli, Pirjo Åström, Riia Tiikkaja, Reidar Grénman, Krister Wennerberg, Outi Monni, Tuula Salo
Software Mentions: 5
Published: over 4 years ago

10.3390/metabo11090626

Metabolic Reprogramming of Mammary Epithelial Cells during TGF-β-Induced Epithelial-to-Mesenchymal Transition
Cited by: 5
Author(s): Hua Wang, Sarantos Kostidis, Oleg A. Mayboroda, Martin Giera, Marten Hornsveld, Peter ten Dijke
Software Mentions: 5
Published: over 2 years ago

10.1038/s41598-021-81349-7

Inhibition of mitochondrial function by metformin increases glucose uptake, glycolysis and GDF-15 release from intestinal cells
Cited by: 46
Author(s): Ming Yang, Tamana Darwish, Pierre Larraufie, Debra Rimmington, Irène Cimino, Deborah A. Goldspink, Benjamin Jenkins, Albert Koulman, Cheryl A. Brighton, Marcella Ma, Brian Lam, Anthony P. Coll, Stephen O’Rahilly, Frank Reimann, Fiona M. Gribble
Software Mentions: 5
Published: over 3 years ago

10.7554/eLife.36521

Experimental evaluation of the importance of colonization history in early-life gut microbiota assembly
Cited by: 129
Author(s): Inés Martínez, María X. Maldonado-Gómez, João Carlos Gomes-Neto, Hatem Kittana, Hua Ding, Robert Schmaltz, Payal Joglekar, Roberto Jiménez Cardona, Nathan L. Marsteller, Steven W. Kembel, Andrew K. Benson, Daniel A. Peterson, Amanda E. Ramer‐Tait, Jens Walter
Software Mentions: 5
Published: over 5 years ago

10.1099/mgen.0.000201

Genomic epidemiology of the commercially important pathogen Renibacterium salmoninarum within the Chilean salmon industry
Cited by: 9
Author(s): Sion C. Bayliss, David W. Verner–Jeffreys, David Ryder, Rudy Suárez, Roxana Olvera Ramírez, Jaime Romero, Ben Pascoe, Sam Sheppard, Marcos Godoy, Edward J. Feil
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2020.00980

Comparison of Bacterial and Fungal Composition and Their Chemical Interaction in Free Tropospheric Air and Snow Over an Entire Winter Season at Mount Sonnblick, Austria
Cited by: 11
Author(s): Nora Els, Marion Greilinger, Michael Reisecker, Romie Tignat-Perrier, Kathrin Baumann‐Stanzer, Anne Kasper-Giebl, Birgit Sattler, Catherine Larose
Software Mentions: 4
Published: about 4 years ago

10.3389/fmicb.2021.639997

Identifying the Specific Root Microbiome of the Hyperaccumulator Noccaea brachypetala Growing in Non-metalliferous Soils
Cited by: 0
Author(s): Soledad Martos, John Danku, Laura Pérez‐Martín, Mercè Llugany, Catalina Cabot, Charlotte Poschenrieder
Software Mentions: 4
Published: about 3 years ago

10.1186/s12936-018-2500-5

malariaAtlas: an R interface to global malariometric data hosted by the Malaria Atlas Project
Cited by: 61
Author(s): Daniel Pfeffer, Timothy C. D. Lucas, D. May, Jonathan Harris, Jennifer Rozier, Katherine A. Twohig, Ursula Dalrymple, Carlos A. Guerra, Catherine L. Moyes, Mike Thorn, Michele Nguyen, Samir Bhatt, Ewan Cameron, Daniel J. Weiss, Rosalind E. Howes, Katherine E. Battle, Harry S. Gibson, Peter W. Gething
Software Mentions: 4
Published: over 5 years ago

10.3390/ani11072107

Activity Budget Comparisons Using Long-Term Observations of a Group of Bottlenose Dolphins (Tursiops truncatus) under Human Care: Implications for Animal Welfare
Cited by: 9
Author(s): Tim Huettner, Sandra Dollhaeupl, Ralph Simon, Katrin Baumgärtner, Lorenzo von Fersen
Software Mentions: 4
Published: almost 3 years ago

10.1371/journal.pntd.0008230

Patients infected with Mycobacterium africanum versus Mycobacterium tuberculosis possess distinct intestinal microbiota
Cited by: 12
Author(s): Sivaranjani Namasivayam, Bassirou Diarra, Seydou Diabaté, Yeya dit Sadio Sarro, A. Koné, Bourahima Kone, Mohamed Tolofoudié, Bocar Baya, M L Diakité, Ousmane Kodio, Keira A. Cohen, Jane L. Holl, Chad Achenbach, S. Chatterjee, Robert L. Murphy, William R. Bishai, Souleymane Diallo, Alan Sher, Mamoudou Maiga
Software Mentions: 4
Published: about 4 years ago

10.15252/emmm.201911659

<scp>FBXL</scp> 4 deficiency increases mitochondrial removal by autophagy
Cited by: 34
Author(s): David Alsina, Oleksandr Lytovchenko, Aleksandra Schab, Ilian Atanassov, F. Schober, Min Jiang, Camilla Koolmeister, Anna Wedell, Robert W. Taylor, Anna Wredenberg, Nils-Göran Larsson
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12936-018-2520-1

Eave ribbons treated with the spatial repellent, transfluthrin, can effectively protect against indoor-biting and outdoor-biting malaria mosquitoes
Cited by: 44
Author(s): Arnold S. Mmbando, Halfan S. Ngowo, Alex J. Limwagu, Masoud Kilalangongono, Khamis Kifungo, Fredros O. Okumu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pntd.0009597

Field evaluation of the gut microbiome composition of pre-school and school-aged children in Tha Song Yang, Thailand, following oral MDA for STH infections
Cited by: 8
Author(s): Katharina Stracke, Poom Adisakwattana, Suparat Phuanukoonnon, Tippayarat Yoonuan, Akkarin Poodeepiyasawat, Paron Dekumyoy, Kittipong Chaisiri, Alexandra Roth Schulze, Stephen Wilcox, Harin Karunajeewa, Rebecca J. Traub, Aaron R. Jex
Software Mentions: 4
Published: almost 3 years ago

10.15252/embj.2020106862

Modulation of plant root growth by nitrogen source‐defined regulation of polar auxin transport
Cited by: 50
Author(s): Krisztina Ötvös, Marco Marconi, Andrea Vega, José Antonio O’Brien, Alexander Johnson, Rashed Abualia, Livio Antonielli, Juan Carlos Montesinos, Yuzhou Zhang, Shutang Tan, Candela Cuesta, Christina Artner, Edwige Bouguyon, Alain Gojon, Jiřı́ Friml, Rodrigo A. Gutiérrez, Krzysztof Wabnik, Eva Benková
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-65535-7

Liver colour scoring index, carotenoids and lipid content assessment as a proxy for lumpfish (Cyclopterus lumpus L.) health and welfare condition
Cited by: 15
Author(s): Kirstin Eliasen, Esbern J. Patursson, Bruce J. McAdam, Enrique J. del Pino, Bernat Morro, Mónica B. Betancor, Johanna L. Baily, Sónia Rey
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-019-46632-8

TAF1, associated with intellectual disability in humans, is essential for embryogenesis and regulates neurodevelopmental processes in zebrafish
Cited by: 23
Author(s): Sanna Gudmundsson, Maria Wilbe, Beata Filipek-Górniok, Anna-Maja Molin, Sara Ekvall, Josefin Johansson, Amin Allalou, Hans Gylje, Vera M. Kalscheuer, Johan Ledin, Göran Annerén, Marie-Louise Bondeson
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pgen.1009146

Crumbs and the apical spectrin cytoskeleton regulate R8 cell fate in the Drosophila eye
Cited by: 4
Author(s): Jonathan M. Pojer, Abdul Jabbar Saiful Hilmi, Shu Kondo, Ken Harvey
Software Mentions: 4
Published: almost 3 years ago

10.1186/s13075-020-02343-4

Single-cell transcriptome conservation in a comparative analysis of fresh and cryopreserved human skin tissue: pilot in localized scleroderma
Cited by: 17
Author(s): Emily Mirizio, Tracy Tabib, Xinjun Wang, Wei Chen, Christopher Liu, Robert Lafyatis, Heidi Jacobe, Kathryn S. Torok
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2021.703785

Differences in Gut Microbiome Composition Between Sympatric Wild and Allopatric Laboratory Populations of Omnivorous Cockroaches
Cited by: 11
Author(s): Kara Tinker, Elizabeth A. Ottesen
Software Mentions: 4
Published: almost 3 years ago

10.3389/fmicb.2021.675328

The Interplay of Phototrophic and Heterotrophic Microbes Under Oil Exposure: A Microcosm Study
Cited by: 4
Author(s): Manoj Kamalanathan, Kathleen A. Schwehr, Jessica M. Labonté, Christian Taube, C.R. Bergen, Nicole Patterson, Noah Claflin, Peter H. Santschi, Antonietta Quigg
Software Mentions: 4
Published: almost 3 years ago

10.3389/fmicb.2021.682886

Beyond Taxonomic Identification: Integration of Ecological Responses to a Soil Bacterial 16S rRNA Gene Database
Cited by: 5
Author(s): Briony Jones, Tim Goodall, Paul B. L. George, Hyun S. Gweon, Jérémy Puissant, Daniel S. Read, Bridget Emmett, David A. Robinson, Davey L. Jones, Robert I. Griffiths
Software Mentions: 4
Published: almost 3 years ago

10.3389/fmicb.2017.00737

Temporal Genomic Phylogeny Reconstruction Indicates a Geospatial Transmission Path of Salmonella Cerro in the United States and a Clade-Specific Loss of Hydrogen Sulfide Production
Cited by: 27
Author(s): Jasna Kovač, Kevin J. Cummings, Lorraine D. Rodriguez‐Rivera, Laura M. Carroll, Anil J. Thachil
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pcbi.1008554

Ten simple rules for navigating the computational aspect of an interdisciplinary PhD
Cited by: 1
Author(s): Sabrina Islam, Christine A. Wells
Software Mentions: 4
Published: over 3 years ago

10.1186/s13068-018-1164-2

Defining functional diversity for lignocellulose degradation in a microbial community using multi-omics studies
Cited by: 40
Author(s): Anna Alessi, Susannah Bird, Nicola C. Oates, Yang Li, Adam Dowle, E. H. Novotny, Eduardo R. deAzevedo, Joseph P. Bennett, Igor Polikarpov, J. Peter W. Young, Simon J. McQueen‐Mason, Neil C. Bruce
Software Mentions: 4
Published: almost 6 years ago

10.1098/rsos.200664

Are post-error adjustments influenced by beliefs in free will? A failure to replicate Rigoni, Wilquin, Brass and Burle, 2013
Cited by: 7
Author(s): Charlotte Eben, Zhang Chen, Emiel Cracco, Marcel Braß, Joël Billieux, Frederick Verbruggen
Software Mentions: 4
Published: over 3 years ago

10.1128/JB.00272-19

Isolates from Colonic Spirochetosis in Humans Show High Genomic Divergence and Potential Pathogenic Features but Are Not Detected Using Standard Primers for the Human Microbiota
Cited by: 10
Author(s): Kaisa Thorell, Linn Inganäs, Annette Backhans, Lars Agréus, Åke Öst, Marjorie M. Walker, Nicholas J. Talley, Lars Kjellström, Anna Andréasson, Lars Engstrand
Software Mentions: 4
Published: over 4 years ago

10.3390/cells9102320

Single Cell ADNP Predictive of Human Muscle Disorders: Mouse Knockdown Results in Muscle Wasting
Cited by: 7
Author(s): Oxana Kapitansky, Gidon Karmon, Shlomo Sragovich, Adva Hadar, Meishar Shahoha, Iman Jaljuli, Lior Bikovski, Eliezer Giladi, Róbert Pálovics, Tal Iram, Illana Gozes
Software Mentions: 4
Published: over 3 years ago

10.1098/rsos.201717

Fertility and mortality impacts of thermal stress from experimental heatwaves on different life stages and their recovery in a model insect
Cited by: 43
Author(s): Kris Sales, Ramakrishnan Vasudeva, Matthew J. G. Gage
Software Mentions: 4
Published: about 3 years ago

10.3390/biomedicines8040081

A Protocol for the Multi-Omic Integration of Cervical Microbiota and Urine Metabolomics to Understand Human Papillomavirus (HPV)-Driven Dysbiosis
Cited by: 3
Author(s): Nataliya Chorna, Filipa Godoy-Vitorino
Software Mentions: 4
Published: about 4 years ago

10.1155/2021/8834578

Identification of Potential Gene and MicroRNA Biomarkers of Acute Kidney Injury
Cited by: 3
Author(s): Siyang Wang, Jie Gao, Yiwei Song, Guangyan Cai, Xiangmei Chen
Software Mentions: 4
Published: over 3 years ago

10.3389/fimmu.2020.01192

Behçet's Disease Under Microbiotic Surveillance? A Combined Analysis of Two Cohorts of Behçet's Disease Patients
Cited by: 21
Author(s): Tim B. van der Houwen, Jan A. M. van Laar, Jasper H Kappen, P. Martin van Hagen, Marcel R. de Zoete, Guus H. van Muijlwijk, Roos-Marijn Berbers, Ad C. Fluit, Malbert R. C. Rogers, James Groot, C. Marijn Hazelbag, Clarissa Consolandi, Marco Severgnini, Clelia Peano, Mario Milco D’Elios, Giacomo Emmi, Helen L. Leavis
Software Mentions: 4
Published: almost 4 years ago

10.7717/peerj.266

Analyzing machupo virus-receptor binding by molecular dynamics simulations
Cited by: 9
Author(s): Austin G. Meyer, Sara L. Sawyer, Andrew D. Ellington, Claus O. Wilke
Software Mentions: 4
Published: about 10 years ago

10.1155/2020/1932948

The SLC Family Are Candidate Diagnostic and Prognostic Biomarkers in Clear Cell Renal Cell Carcinoma
Cited by: 20
Author(s): Weiting Kang, Meng Zhang, Qiang Wang, Dawei Gu, Zhilong Huang, Hanbo Wang, Yuzhu Xiang, Qinghua Xia, Zilian Cui, Xunbo Jin
Software Mentions: 4
Published: about 4 years ago

10.3389/fimmu.2021.705381

Antibody Repertoire Analysis of Tumor-Infiltrating B Cells Reveals Distinct Signatures and Distributions Across Tissues
Cited by: 7
Author(s): Ligal Aizik, Yael Dror, David Taussig, Adi Barzel, Yaron Carmi, Yariv Wine
Software Mentions: 4
Published: almost 3 years ago

10.7717/peerj.2959

Evolutionary and functional implications of hypervariable loci within the skin virome
Cited by: 26
Author(s): Geoffrey D. Hannigan, Qi Zheng, Jacquelyn S. Meisel, Samuel S. Minot, Frederic D. Bushman, Elizabeth A. Grice
Software Mentions: 4
Published: over 7 years ago

10.1155/2020/8162524

High-Throughput Sequencing and Exploration of the lncRNA-circRNA-miRNA-mRNA Network in Type 2 Diabetes Mellitus
Cited by: 39
Author(s): Fang Yang, Chen Yang, Zhiqiang Xue, Yaogai Lv, Ли Шен, Kexin Li, Pingping Zheng, Pan Pan, Tianyu Feng, Lina Jin, Yan Yao
Software Mentions: 4
Published: almost 4 years ago

Projects: pypi: ggplot

Papers Mentioning ggplot 796