Ecosyste.ms: Papers

10.1371/journal.pntd.0009252

Optimising predictive modelling of Ross River virus using meteorological variables
Cited by: 4
Author(s): Iain S. Koolhof, Simon M. Firestone, SS Bettiol, Michael A. Charleston, Katherine B Gibney, Peter J. Neville, Andrew Jardine, Scott Carver
Software Mentions: 23
Published: over 3 years ago

10.7717/peerj.6876

Hierarchical generalized additive models in ecology: an introduction with mgcv
Cited by: 443
Author(s): Eric J. Pedersen, David L. Miller, Gavin L. Simpson, Noam Ross
Software Mentions: 15
Published: over 5 years ago

10.1002/ece3.7294

Determinants of habitat suitability models transferability across geographically disjunct populations: Insights from <i>Vipera ursinii urs</i> <i>inii</i>
Cited by: 8
Author(s): Francesco Cerasoli, Aurélien Besnard, Marc-Antoine Marchand, Paola D’Alessandro, Mattia Iannella, Maurizio Biondi
Software Mentions: 12
Published: over 3 years ago

10.1002/ece3.5295

<i>Acacia dealbata</i> invasion in Chile: Surprises from climatic niche and species distribution models
Cited by: 12
Author(s): Bárbara Langdon, Aníbal Pauchard, Ramiro O. Bustamante
Software Mentions: 12
Published: over 5 years ago

10.1186/s12942-017-0097-5

Estimating the prevalence of 26 health-related indicators at neighbourhood level in the Netherlands using structured additive regression
Cited by: 18
Author(s): Jan van de Kassteele, Laurens Zwakhals, Oscar Breugelmans, Caroline Ameling, Carolien van den Brink
Software Mentions: 12
Published: over 7 years ago

10.12688/f1000research.12122.1

Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference
Cited by: 14
Author(s): Fanny Perraudeau, Davide Risso, Kelly Street, Elizabeth Purdom, Sandrine Dudoit
Software Mentions: 12
Published: over 7 years ago

10.1371/journal.pone.0225253

Visualising statistical models using dynamic nomograms
Cited by: 78
Author(s): Amirhossein Jalali, Alberto Alvarez‐Iglesias, Davood Roshan, John Newell
Software Mentions: 11
Published: about 5 years ago

10.1016/j.isci.2021.102882

Integrated analysis of glycan and RNA in single cells
Cited by: 22
Author(s): Fumi Minoshima, Haruka Ozaki, Haruki Odaka, Hiroaki Tateno
Software Mentions: 11
Published: over 3 years ago

10.1186/s40462-019-0175-3

Exploration during early life: distribution, habitat and orientation preferences in juvenile king penguins
Cited by: 14
Author(s): Florian Orgeret, Clara Péron, Manfred R. Enstipp, Karine Delord, Henri Weimerskirch, CA Bost
Software Mentions: 10
Published: about 5 years ago

10.3389/fpsyg.2018.00513

Modeling Linguistic Variables With Regression Models: Addressing Non-Gaussian Distributions, Non-independent Observations, and Non-linear Predictors With Random Effects and Generalized Additive Models for Location, Scale, and Shape
Cited by: 20
Author(s): Christophe Coupé
Software Mentions: 10
Published: over 6 years ago

10.1038/s41598-020-70722-7

Active and social life is associated with lower non-social fearfulness in pet dogs
Cited by: 15
Author(s): Emma Hakanen, Salla Mikkola, Milla Salonen, Jenni Puurunen, Sini Sulkama, Cynthia Gobbi Alves Araújo, Hannes Lohi
Software Mentions: 10
Published: over 4 years ago

10.1038/s41598-020-75476-w

Mass wasting susceptibility assessment of snow avalanches using machine learning models
Cited by: 44
Author(s): Bahram Choubin, Moslem Borji, Farzaneh Sajedi Hosseini, Amir Mosavi, Adrienn Dineva
Software Mentions: 10
Published: about 4 years ago

10.1002/sim.7582

Dynamic prediction in functional concurrent regression with an application to child growth
Cited by: 13
Author(s): Andrew Leroux, Luo Xiao, Ciprian M. Crainiceanu, William Checkley
Software Mentions: 10
Published: almost 7 years ago

10.1038/s41598-021-88793-5

Aggressive behaviour is affected by demographic, environmental and behavioural factors in purebred dogs
Cited by: 22
Author(s): Salla Mikkola, Milla Salonen, Jenni Puurunen, Emma Hakanen, Sini Sulkama, Cynthia Gobbi Alves Araújo, Hannes Lohi
Software Mentions: 9
Published: over 3 years ago

10.1186/s12874-019-0666-3

A review of spline function procedures in R
Cited by: 250
Author(s): Aris Perperoglou, Willi Sauerbrei, Michal Abrahamowicz, Matthias Schmid
Software Mentions: 9
Published: over 5 years ago

10.1186/s12942-021-00268-y

Locational privacy-preserving distance computations with intersecting sets of randomly labeled grid points
Cited by: 2
Author(s): Rainer Schnell, Jonas Klingwort, James Farrow
Software Mentions: 9
Published: over 3 years ago

10.1038/s41598-019-49519-w

Recent decline in vegetative regeneration of bamboo (Yushania alpina), a key food plant for primates in Volcanoes National Park, Rwanda
Cited by: 8
Author(s): Yntze van der Hoek, Emmanuel Faida, Winnie Eckardt, Innocent Kwizera, Mia A. Derhé, Damien Caillaud, Tara S. Stoinski, Deogratias Tuyisingize
Software Mentions: 9
Published: about 5 years ago

10.1186/1471-2148-14-9

Caves as microrefugia: Pleistocene phylogeography of the troglophilic North American scorpion Pseudouroctonus reddelli
Cited by: 36
Author(s): Robert W. Bryson, Lorenzo Prendini, Warren E. Savary, Peter B. Pearman
Software Mentions: 9
Published: almost 11 years ago

10.1016/j.scitotenv.2020.144115

Prenatal exposure to a wide range of environmental chemicals and child behaviour between 3 and 7 years of age – An exposome-based approach in 5 European cohorts
Cited by: 20
Author(s): Paulina Jedynak, Léa Maitre, Mònica Guxens, Kristine B. Gützkow, Jordi Júlvez, Mònica López-Vicente, Jordi Sunyer, Maribel Casas, Leda Chatzi, Regina Gražulevičienė, Mariza Kampouri, Rosemary McEachan, Mark Mon-Williams, Ibón Tamayo, Cathrine Thomsen, José Urquiza, Marina Vafeiadi, John Wright, Xavier Basagaña, Martine Vrijheid, Claire Philippat
Software Mentions: 8
Published: over 3 years ago

10.3389/fcell.2021.702741

Wnt Signaling Induces Asymmetric Dynamics in the Actomyosin Cortex of the C. elegans Endomesodermal Precursor Cell
Cited by: 4
Author(s): Francesca Caroti, Wim Thiels, Michiel Vanslambrouck, Rob Jelier
Software Mentions: 8
Published: about 3 years ago

10.1002/ece3.4134

A simple function for full-subsets multiple regression in ecology with R
Cited by: 103
Author(s): Rebecca Fisher, Shaun K. Wilson, Tsai Min Sin, Ai C. Lee, Tim Langlois
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0104705

Laurentian Great Lakes Phytoplankton and Their Water Quality Characteristics, Including a Diatom-Based Model for Paleoreconstruction of Phosphorus
Cited by: 37
Author(s): Euan D. Reavie, Adam J. Heathcote, Victoria L. Shaw Chraïbi
Software Mentions: 7
Published: over 10 years ago

10.1038/s41598-020-60546-w

Inadequate socialisation, inactivity, and urban living environment are associated with social fearfulness in pet dogs
Cited by: 45
Author(s): Jenni Puurunen, Emma Hakanen, Milla Salonen, Salla Mikkola, Sini Sulkama, Cynthia Gobbi Alves Araújo, Hannes Lohi
Software Mentions: 7
Published: over 4 years ago

10.1111/1365-2656.12178

Building integral projection models: a user's guide
Cited by: 113
Author(s): Mark Rees, Dylan Z. Childs, Stephen P. Ellner
Software Mentions: 7
Published: almost 11 years ago

10.1002/ece3.3943

Seasonal bat activity related to insect emergence at three temperate lakes
Cited by: 26
Author(s): Ioanna Salvarina, Dorian Gravier, Karl‐Otto Rothhaupt
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pone.0189860

Survival analysis and classification methods for forest fire size
Cited by: 14
Author(s): Pier Olivier Tremblay, Thierry Duchesne, Steven G. Cumming
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.pone.0187742

Increased sediment load during a large-scale dam removal changes nearshore subtidal communities
Cited by: 26
Author(s): Stephen P. Rubin, Ian Miller, Melissa M. Foley, Helen Berry, Jeffrey J. Duda, Benjamin Hudson, Nancy Elder, Matthew M. Beirne, Jonathan A. Warrick, Michael L. McHenry, Andrew W. Stevens, Emily Eidam, A. S. Ogston, Guy Gelfenbaum, Rob Pedersen
Software Mentions: 7
Published: almost 7 years ago

10.1186/s13071-020-04098-y

Rats as potential reservoirs for neglected zoonotic Bartonella species in Flanders, Belgium
Cited by: 7
Author(s): Maria Krügel, Martin Pfeffer, Nina Król, Christian Imholt, Kristof Baert, Rainer G. Ulrich, Anna Obiegala
Software Mentions: 6
Published: over 4 years ago

10.1186/s13071-015-1250-2

Ecology and spatiotemporal dynamics of sandflies in the Mediterranean Languedoc region (Roquedur area, Gard, France)
Cited by: 36
Author(s): Jorian Prudhomme, Nil Rahola, Céline Toty, Cécile Cassan, David Roiz, Baptiste Vergnes, Magalie Thierry, J. A. Rioux, Bülent Alten, Denis Sereno, Anne‐Laure Bañuls
Software Mentions: 6
Published: almost 9 years ago

10.3390/metabo11010012

Metabolic Dynamics of In Vitro CD8+ T Cell Activation
Cited by: 13
Author(s): Joy Edwards-Hicks, Michael Mitterer, Erika L. Pearce, Joerg M. Buescher
Software Mentions: 6
Published: almost 4 years ago

10.1186/1476-072X-12-10

Identifying landscape features associated with Rift Valley fever virus transmission, Ferlo region, Senegal, using very high spatial resolution satellite imagery
Cited by: 27
Author(s): Valérie Soti, Véronique Chevalier, Jonathan Maura, Agnès Bégué, Camille Lelong, Renaud Lancelot, Yaya Thiongane, Annelise Tran
Software Mentions: 6
Published: almost 12 years ago

10.7554/eLife.61590

Genetic disruption of WASHC4 drives endo-lysosomal dysfunction and cognitive-movement impairments in mice and humans
Cited by: 23
Author(s): Jamie L Courtland, Tyler Wa Bradshaw, Greg Waitt, Erik J. Soderblom, Tricia Ho, Anna Rajab, Ricardo Vancini, Il Hwan Kim, Scott H. Soderling
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0220165

PS-SiZer map to investigate significant features of body-weight profile changes in HIV infected patients in the IeDEA Collaboration
Cited by: 0
Author(s): Jaroslaw Harezlak, Samiha Sarwat, Kara Wools‐Kaloustian, Michael Schomaker, Eric Balestre, Matthew Law, Sasisopin Kiertiburanakul, Matthew P. Fox, Diana Huis in ʼt Veld, Beverly Musick, Constantin T. Yiannoutsos
Software Mentions: 5
Published: over 4 years ago

10.1186/s12918-015-0197-4

A correction method for systematic error in 1H-NMR time-course data validated through stochastic cell culture simulation
Cited by: 6
Author(s): Stanislav Sokolenko, Marc G. Aucoin
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pone.0256534

Impact of the dog population and household environment for the maintenance of natural foci of Leishmania infantum transmission to human and animal hosts in endemic areas for visceral leishmaniasis in Sao Paulo state, Brazil
Cited by: 8
Author(s): Patrícia Sayuri Silvestre Matsumoto, Roberto Mitsuyoshi Hiramoto, Virgínia Bodelão Richini-Pereira, Valéria Medina Camprigher, Helena Hilomi Taniguchi, José Eduardo de Raeffray Barbosa, Luiz Ricardo Paes de Barros Cortez, Elivelton da Silva Fonseca, Raúl Borges Guimarães, José Eduardo Tolezano
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0033954

Housing Arrangement and Location Determine the Likelihood of Housing Loss Due to Wildfire
Cited by: 129
Author(s): Alexandra D. Syphard, Jon E. Keeley, Avi Bar Massada, Teresa J. Brennan, Volker C. Radeloff
Software Mentions: 5
Published: over 12 years ago

10.1038/s41598-020-62754-w

Associations of C-reactive Protein with 25-hydroxyvitamin D in 24 Specific Diseases: A Cross-sectional Study from NHANES
Cited by: 5
Author(s): Fang Yang, Mengzi Sun, Chong Sun, Jiagen Li, Xiuning Yang, Chunli Bi, Min Wang, Liyuan Pu, Jianmeng Wang, Chunxiao Wang, Meizhen Xie, Yan Yao, Lina Jin
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0178323

Effect of climate on incidence of respiratory syncytial virus infections in a refugee camp in Kenya: A non-Gaussian time-series analysis
Cited by: 11
Author(s): Raymond Nyoka, Jimmy Omony, Samuel Mwalili, Thomas Achia, Anthony Gichangi, Henry Mwambi
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0106366

Mapping Seabird Sensitivity to Offshore Wind Farms
Cited by: 64
Author(s): Gareth Bradbury, Mark Trinder, Bob Furness, Alex N. Banks, R. W. G. Caldow, Duncan Hume
Software Mentions: 5
Published: about 10 years ago

10.1371/journal.pone.0146194

The Frequency of Rapid Pupil Dilations as a Measure of Linguistic Processing Difficulty
Cited by: 53
Author(s): Vera Demberg, Asad Sayeed
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pntd.0001218

Evidence for a Peak Shift in a Humoral Response to Helminths: Age Profiles of IgE in the Shuar of Ecuador, the Tsimane of Bolivia, and the U.S. NHANES
Cited by: 77
Author(s): Aaron D. Blackwell, Michael Gurven, Lawrence S. Sugiyama, Felicia C. Madimenos, Melissa A. Liebert, Mary C. Martin, Hillard Kaplan, J. Josh Snodgrass
Software Mentions: 5
Published: over 13 years ago

10.1371/journal.pone.0224220

Age, period and cohort analysis of age-specific maternal mortality trend in Ethiopia: A secondary analysis
Cited by: 2
Author(s): Biniam Getachew, Tippawan Liabsuetrakul, Shama Virani, Yirgu Gebrehiwot
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12874-021-01234-9

LASSO type penalized spline regression for binary data
Cited by: 17
Author(s): Muhammad Abu Shadeque Mullah, James A. Hanley, Andrea Benedetti
Software Mentions: 5
Published: over 3 years ago

10.7717/peerj.6776

An affordable and automated imaging approach to acquire highly resolved individual data—an example of copepod growth in response to multiple stressors
Cited by: 6
Author(s): Jan Heuschele, Torben Lode, Tom Andersen, Katrine Borgå, Josefin Titelman
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0210164

Marine mammals and sea turtles listed under the U.S. Endangered Species Act are recovering
Cited by: 37
Author(s): Abel Valdivia, Shaye Wolf, Kierán Suckling
Software Mentions: 5
Published: almost 6 years ago

10.3390/jcm8101666

The Extended Postoperative Care-Score (EXPO-Score)—An Objective Tool for Early Identification of Indication for Extended Postoperative Care
Cited by: 2
Author(s): Timo Iden, Amke Caliebe, Jochen Renner, Maj-Britt Hertz, Jan Höcker, Päivi Suvanto-Scholz, Markus Steinfath, Norbert Weiler, Matthias Gruenewald
Software Mentions: 5
Published: about 5 years ago

10.1186/s12898-019-0271-7

Adaptation of wild boar (Sus scrofa) activity in a human-dominated landscape
Cited by: 52
Author(s): Franz Johann, Markus Handschuh, Peter Linderoth, Carsten F. Dormann, Janosch Arnold
Software Mentions: 4
Published: almost 5 years ago

10.1186/gb-2014-15-2-r30

Using high-density DNA methylation arrays to profile copy number alterations
Cited by: 109
Author(s): Andrew Feber, Paul Guilhamon, Matthias Lechner, Tim R. Fenton, Gareth A. Wilson, Christina Thirlwell, Tiffany Morris, Adrienne M. Flanagan, Andrew E. Teschendorff, John D. Kelly, Stephan Beck
Software Mentions: 4
Published: almost 11 years ago

10.1186/s12913-021-06492-3

Prediction of hospital bed capacity during the COVID− 19 pandemic
Cited by: 27
Author(s): Mieke Deschepper, Kristof Eeckloo, Simon Malfait, Dominique Benoît, Steven Callens, Stijn Vansteelandt
Software Mentions: 4
Published: over 3 years ago

10.7717/peerj.1592

The role of geography and host abundance in the distribution of parasitoids of an alien pest
Cited by: 7
Author(s): Petra Nováková, Jaroslav Holuša, Jakub Horák
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pntd.0005973

Developing a dengue forecast model using machine learning: A case study in China
Cited by: 141
Author(s): Pi Guo, Tao Liu, Qin Zhang, Li Wang, Jianpeng Xiao, Qingying Zhang, Ganfeng Luo, Zhihao Li, Jianfeng He, Yonghui Zhang
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0141194

Analysis of the Optimal Duration of Behavioral Observations Based on an Automated Continuous Monitoring System in Tree Swallows (Tachycineta bicolor): Is One Hour Good Enough?
Cited by: 27
Author(s): Ádám Z. Lendvai, Çağlar Akçay, Jenny Q. Ouyang, Roslyn Dakin, Alice D. Domalik, Prianka S St John, Mark T. Stanback, Ignacio T. Moore, Frances Bonier
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0246473

The forests of the midwestern United States at Euro-American settlement: Spatial and physical structure based on contemporaneous survey data
Cited by: 6
Author(s): Paciorek Cj, Charles V. Cogbill, Jody A. Peters, John W. Williams, David J. Mladenoff, Andria Dawson, J. S. McLachlan
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0101268

Fortuitous Encounters between Seagliders and Adult Female Northern Fur Seals (Callorhinus ursinus) off the Washington (USA) Coast: Upper Ocean Variability and Links to Top Predator Behavior
Cited by: 18
Author(s): Noel A. Pelland, Jeremy T. Sterling, Mary‐Anne Lea, Nicholas A. Bond, Rolf R. Ream, Craig M. Lee, Charles C. Eriksen
Software Mentions: 4
Published: about 10 years ago

10.1186/s12874-017-0364-y

Simulation of complex data structures for planning of studies with focus on biomarker comparison
Cited by: 4
Author(s): Andreas Schulz, Daniela Zöller, Stefan Nickels, Manfred E. Beutel, Maria Blettner, Philipp S. Wild, Harald Binder
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0183848

A Dynamic Energy Budget (DEB) model to describe Laternula elliptica (King, 1832) seasonal feeding and metabolism
Cited by: 17
Author(s): Antonio Agüera, In Young Ahn, Charlène Guillaumot, Bruno Danis
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0092882

Smoking and Body Fat Mass in Relation to Bone Mineral Density and Hip Fracture: The Hordaland Health Study
Cited by: 27
Author(s): Jannike Øyen, Clara Gram Gjesdal, Ottar Nygård, Stein Atle Lie, Haakon E Meyer, Ellen M Apalset, Per Magne Ueland, Eva Kristine Ringdal Pedersen, Øivind Midttun, Stein Emil Vollset, Grethe S. Tell
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0072200

A Network Extension of Species Occupancy Models in a Patchy Environment Applied to the Yosemite Toad (Anaxyrus canorus)
Cited by: 15
Author(s): Eric L. Berlow, Roland A. Knapp, Steven M. Ostoja, Richard J. Williams, Heather C. McKenny, John R. Matchett, Qinghua Guo, Gary M. Fellers, Patrick M. Kleeman, Matthew L. Brooks, Lucas Joppa
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0006825

Re-Shuffling of Species with Climate Disruption: A No-Analog Future for California Birds?
Cited by: 185
Author(s): Diana Stralberg, Dennis Jongsomjit, Christine A. Howell, Mark A. Snyder, John D. Alexander, John A. Wiens, Terry L. Root
Software Mentions: 4
Published: about 15 years ago

10.1111/1365-2656.12282

Long‐term phenological trends, species accumulation rates, aphid traits and climate: five decades of change in migrating aphids
Cited by: 118
Author(s): James R. Bell, L. J. Alderson, Daniela Izera, T. Kruger, Sue Parker, J. Pickup, C. R. Shortall, M. S. Taylor, P. J. Verrier, R. Harrington
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0161006

Hand, Foot and Mouth Disease in Hong Kong: A Time-Series Analysis on Its Relationship with Weather
Cited by: 63
Author(s): Pin Wang, William B. Goggins, Emily Ying Yang Chan
Software Mentions: 3
Published: over 8 years ago

10.1186/s12864-018-4663-4

Partial-arm translocations in evolution of malaria mosquitoes revealed by high-coverage physical mapping of the Anopheles atroparvus genome
Cited by: 17
Author(s): Gleb N. Artemov, Semen M. Bondarenko, Anastasia N. Naumenko, V. N. Stegniy, Igor V. Sharakhov
Software Mentions: 3
Published: over 6 years ago

10.1186/s12882-021-02463-2

Serum uric acid is associated with coronary artery calcification in early chronic kidney disease: a cross-sectional study
Cited by: 4
Author(s): Miyeun Han, Hyunsuk Kim, Hyo Jin Kim, Eunjeong Kang, Yong Soo Kim, Kyu Hun Choi, Soo Wan Kim, Curie Ahn, Kook Hwan Oh
Software Mentions: 3
Published: over 3 years ago

10.1186/s12870-015-0555-9

Microspore culture reveals complex meiotic behaviour in a trigenomic Brassica hybrid
Cited by: 20
Author(s): Annaliese S. Mason, Junko Takahira, Chhaya Atri, Birgit Samans, Alice Hayward, Wallace Cowling, Jacqueline Batley, Matthew N. Nelson
Software Mentions: 3
Published: over 9 years ago

10.1093/bioinformatics/btw303

A simple yet accurate correction for winner's curse can predict signals discovered in much larger genome scans
Cited by: 41
Author(s): Timothy B. Bigdeli, Dong‐Hyung Lee, Bradley T. Webb, Brien P. Riley, Vladimir I. Vladimirov, Ayman H. Fanous, Kenneth S. Kendler, Silviu‐Alin Bacanu
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0034558

Are We Predicting the Actual or Apparent Distribution of Temperate Marine Fishes?
Cited by: 30
Author(s): Jacquomo Monk, Daniel Ierodiaconou, Euan S. Harvey, Alex Rattray, Vincent L. Versace
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0207790

Accounting for environmental and observer effects in estimating abundance of southern bluefin tuna from aerial survey data
Cited by: 1
Author(s): J. Paige Eveson, Mark V. Bravington, Jessica Farley
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0102060

Dynamics of Whale Shark Occurrence at Their Fringe Oceanic Habitat
Cited by: 29
Author(s): Pedro Afonso, Niall McGinty, Miguel Machete
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0197824

Quantification of chemical and mechanical bioerosion rates of six Caribbean excavating sponge species found on the coral reefs of Curaçao
Cited by: 20
Author(s): Didier M. de Bakker, Alice E. Webb, Lisanne A. van den Bogaart, Steven M. A. C. van Heuven, H.W.G. Meesters, Fleur C. van Duyl
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0098206

Response of Rocky Reef Top Predators (Serranidae: Epinephelinae) in and Around Marine Protected Areas in the Western Mediterranean Sea
Cited by: 57
Author(s): Carlos Werner Hackradt, José Antonio García-Charton, Mireille Harmelin-Vivien, Ángel Pérez-Ruzafa, Laurence Le Diréach, Just T. Bayle-Sempere, Éric Chabrière, Denis Ody, Olga Reñones, Pablo Sánchez-Jérez, Carlos Valle
Software Mentions: 3
Published: over 10 years ago

10.1093/cercor/bhu098

Rapid Bidirectional Reorganization of Cortical Microcircuits
Cited by: 24
Author(s): Giorgia Albieri, Samuel J. Barnes, Benito de Celis Alonso, Claire E. J. Cheetham, Clarissa E. J. Edwards, Andrew Lowe, Harini Karunaratne, John P. Dear, Kalok C. Lee, Gerald T. Finnerty
Software Mentions: 3
Published: over 10 years ago

10.1186/1476-069X-13-63

Spatio-temporal modeling of particulate air pollution in the conterminous United States using geographic and meteorological predictors
Cited by: 141
Author(s): Jeff D. Yanosky, Christopher J. Paciorek, Francine Laden, Jaime E. Hart, Robin Puett, Duanping Liao, Helen Suh
Software Mentions: 3
Published: over 10 years ago

10.1289/ehp.1408795

Differences in Birth Weight Associated with the 2008 Beijing Olympics Air Pollution Reduction: Results from a Natural Experiment
Cited by: 131
Author(s): David Q. Rich, Kaibo Liu, Jinliang Zhang, Sally W. Thurston, Timothy P. Stevens, Ying Pan, Cathleen Kane, Barry Weinberger, Pamela Ohman‐Strickland, Tracey J. Woodruff, Xiaoli Duan, Vanessa Assibey‐Mensah, Junfeng Zhang
Software Mentions: 3
Published: about 9 years ago

10.3389/fimmu.2020.589380

T-Cell Hyperactivation and Paralysis in Severe COVID-19 Infection Revealed by Single-Cell Analysis
Cited by: 115
Author(s): Bahire Kalfaoglu, José Almeida‐Santos, Chanidapa Adele Tye, Yorifumi Satou, Masahiro Ono
Software Mentions: 3
Published: about 4 years ago

10.3389/fmicb.2017.02198

Links between Soil Fungal Diversity and Plant and Soil Properties on the Loess Plateau
Cited by: 76
Author(s): Yang Yang, Yanxing Dou, Yanqun Huang, Shaoshan An
Software Mentions: 3
Published: about 7 years ago

10.1098/rsob.110008

Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission
Cited by: 108
Author(s): Stephen Baker, Kathryn E. Holt, Archie Clements, Abhilasha Karkey, Amit Arjyal, Maciej F. Boni, Sabina Dongol, Naomi Hammond, Samir Koirala, Duy Pham Thanh, Tran Vu Thieu Nga, James Campbell, Christiane Dolecek, Buddha Basnyat, Gordon Dougan, Jeremy Farrar
Software Mentions: 3
Published: about 13 years ago

10.3390/nu8100604

Intakes of Folate and Vitamin B12 and Biomarkers of Status in the Very Old: The Newcastle 85+ Study
Cited by: 16
Author(s): Nuno Mendonça, John C. Mathers, Ashley Adamson, Carmen Martin-Ruiz, Chris Seal, Carol Jagger, Tom R. Hill
Software Mentions: 2
Published: about 8 years ago

10.3390/nu10060703

Comparison of Methods for Estimating Dietary Food and Nutrient Intakes and Intake Densities from Household Consumption and Expenditure Data in Mongolia
Cited by: 14
Author(s): Sabri Bromage, Bernard Rosner, Janet W. Rich‐Edwards, Davaasambuu Ganmaa, Soninkhishig Tsolmon, Zuunnast Tserendejid, Tseye-Oidov Odbayar, Margaret Traeger, Wafaie W. Fawzi
Software Mentions: 2
Published: over 6 years ago

10.3389/fphys.2016.00649

Is Maximum Food Intake in Endotherms Constrained by Net or Factorial Aerobic Scope? Lessons from the Leaf-Eared Mouse
Cited by: 4
Author(s): Karin Maldonado, Pablo Sabat, Gabriela Píriz, José M. Bogdanovich, Roberto F. Nespolo, Francisco Bozinovic
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpsyg.2020.602401

Adolescent Cranial Volume as a Sensitive Marker of Parental Investment: The Role of Non-material Resources?
Cited by: 6
Author(s): Velda Lauringson, Gudrun Veldre, Peeter Hõrak
Software Mentions: 2
Published: almost 4 years ago

10.1186/1476-069X-11-80

The spatial distribution of known predictors of autism spectrum disorders impacts geographic variability in prevalence in central North Carolina
Cited by: 21
Author(s): Kate Hoffman, Amy E. Kalkbrenner, Verónica M. Vieira, Julie L. Daniels
Software Mentions: 2
Published: about 12 years ago

10.1186/1476-069X-10-63

Spatial-temporal analysis of non-Hodgkin lymphoma in the NCI-SEER NHL case-control study
Cited by: 28
Author(s): David C. Wheeler, Anneclaire J. De Roos, James R. Cerhan, Lindsay M. Morton, Richard K. Severson, Wendy Cozen, Mary H. Ward
Software Mentions: 2
Published: over 13 years ago

10.1093/gbe/evu184

Evidence for Deep Regulatory Similarities in Early Developmental Programs across Highly Diverged Insects
Cited by: 35
Author(s): Majid Kazemian, Kushal Suryamohan, Jiayu Chen, Yinan Zhang, Md. Abul Hassan Samee, Marc S. Halfon, Saurabh Sinha
Software Mentions: 2
Published: about 10 years ago

10.1007/s10021-019-00467-6

Cell Size Decrease and Altered Size Structure of Phytoplankton Constrain Ecosystem Functioning in the Middle Danube River Over Multiple Decades
Cited by: 19
Author(s): András Abonyi, Keve Tihamér Kiss, András Hidas, Gábor Borics, Gábor Várbíró, Éva Ács
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0010112

Clonal Analysis in Mice Underlines the Importance of Rhombomeric Boundaries in Cell Movement Restriction during Hindbrain Segmentation
Cited by: 37
Author(s): Eva Jiménez-Guri, Frederic Udina, Jean-François Colas, James Sharpe, Laura Padrón-Barthe, Miguel Torres, Cristina Pujades
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0196496

Phenotypic plasticity of life-history traits of a calanoid copepod in a tropical lake: Is the magnitude of thermal plasticity related to thermal variability?
Cited by: 12
Author(s): Elizabeth Ortega‐Mayagoitia, Osvaldo Hernández-Martínez, Jorge Ciros‐Pérez
Software Mentions: 2
Published: over 6 years ago

10.1242/jeb.118109

Fishing for drifts: detecting buoyancy changes of a top marine predator using a step-wise filtering method
Cited by: 8
Author(s): Samantha Alex Gordine, Michael A. Fedak, Lars Boehme
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep11343

Continental drift and climate change drive instability in insect assemblages
Cited by: 11
Author(s): Fengqing Li, José Manuel Tierno de Figueroa, Sovan Lek, Young‐Seuk Park
Software Mentions: 2
Published: over 9 years ago

10.1038/srep21081

The optimal sex pheromone release rate for trapping the codling moth Cydia pomonella (Lepidoptera: Tortricidae) in the field
Cited by: 4
Author(s): Wei Liu, Jing Xu, Runzhi Zhang
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-018-22712-z

Monitoring the Age of Mosquito Populations Using Near-Infrared Spectroscopy
Cited by: 43
Author(s): Ben Lambert, Maggy T. Sikulu-Lord, Vale S. Mayagaya, Gregor J. Devine, Floyd E. Dowell, Thomas S. Churcher
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-38821-2

Sulphadoxine-pyrimethamine plus azithromycin may improve birth outcomes through impacts on inflammation and placental angiogenesis independent of malarial infection
Cited by: 13
Author(s): Holger W. Unger, Annjaleen P Hansa, Christelle Buffet, Wina Hasang, Andrew Teo, Louise M. Randall, Maria Ome-Kaius, Stephan Karl, Ayen A Anuan, James G. Beeson, Ivo Müeller, Sarah Stock, Stephen J. Rogerson
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-39076-7

Long fragments achieve lower base quality in Illumina paired-end sequencing
Cited by: 56
Author(s): Ge Tan, Lennart Opitz, Ralph Schlapbach, Hubert Rehrauer
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0046170

When Giants Turn Up: Sighting Trends, Environmental Influences and Habitat Use of the Manta Ray Manta alfredi at a Coral Reef
Cited by: 83
Author(s): Fabrice R. A. Jaine, Lydie I. E. Couturier, Scarla J. Weeks, Kathy A. Townsend, Michael B. Bennett, Kym Fiora, Anthony J. Richardson
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0066670

Polyandry Has No Detectable Mortality Cost in Female Mammals
Cited by: 16
Author(s): Jean‐François Lemaître, Jean‐Michel Gaillard
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0071404

Uremic Pruritus, Dialysis Adequacy, and Metabolic Profiles in Hemodialysis Patients: A Prospective 5-Year Cohort Study
Cited by: 68
Author(s): Mei‐Ju Ko, Hon-Yen Wu, Hung‐Yuan Chen, Yen‐Ling Chiu, Shih‐Ping Hsu, Mei‐Fen Pai, Ju-YehYang, Chun-Fu Lai, Haibo Lu, Shu-Chen Huang, Shaoyu Yang, Su-Yin Wen, Hsien-Ching Chiu, Fu–Chang Hu, Yu‐Sen Peng, Shiou‐Hwa Jee
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0159795

Modelling Vulnerability and Range Shifts in Ant Communities Responding to Future Global Warming in Temperate Forests
Cited by: 10
Author(s): Tae‐Sung Kwon, Fengqing Li, Sung‐Soo Kim, Jung Hwa Chun, Park Young-Seuk
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0161422

Monetary Diet Cost, Diet Quality, and Parental Socioeconomic Status in Spanish Youth
Cited by: 23
Author(s): Helmut Schröder, Santiago F. Gómez, Lourdes Ribas‐Barba, Carmen Pérez Rodrigo, Rowaedh Ahmed Bawaked, Montserrat Fitó, Lluís Serra-Majem
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0018927

Citizen Science Reveals Unexpected Continental-Scale Evolutionary Change in a Model Organism
Cited by: 122
Author(s): Jonathan Silvertown, L. M. Cook, R. A. Cameron, Mike Dodd, Kevin McConway, Jenny P. Worthington, Peter W. Skelton, Christian Anton, Oliver Bossdorf, Bruno Baur, Menno Schilthuizen, Benoît Fontaine, Helmut Sattmann, Giorgio Bertorelle, Maria Inês Correia, Cristina Oliveira, Beata M. Pokryszko, Małgorzata Ożgo, Arturs Stalažs, Eoin Gill, Üllar Rammul, Péter Sólymos, Zoltán Fehér, Xavier Juan
Software Mentions: 2
Published: over 13 years ago

10.1155/2017/6531709

Effect of Efavirenz on Endogenous Progesterone Concentrations and Contraceptive Outcomes among Ugandan HIV Infected Women Coadministering Ethinylestradiol/Levonorgestrel
Cited by: 0
Author(s): Grant Munkwase, Kuteesa R. Bisaso, Othman Kakaire, Sarah Nanzigu
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pntd.0008209

Distribution and seasonal fluctuations of Ae. aegypti and Ae. albopictus larval and pupae in residential areas in an urban landscape
Cited by: 15
Author(s): Jayanthi Rajarethinam, Janet Ong, Zhi-Wei Neo, Lee Ching Ng, Joel Aik
Software Mentions: 2
Published: over 4 years ago