Projects: pypi: fermi
https://packages.ecosyste.ms/registries/pypi.org/packages/fermi
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5 versions
Latest release: almost 2 years ago
33 downloads last month
Enhanced Analysis
Repository Activity:
Repository Owner:
Giuliano (user)
README Analysis:
Science Score: 65/100
Starting Score: 100 points
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-15
No science keywords
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-10
No science terms in description
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Very Likely Science (65)
Papers Mentioning fermi 7
10.1099/mgen.0.000131
ARIBA: rapid antimicrobial resistance genotyping directly from sequencing readsCited by: 370
Author(s): Martin Hunt, Alison E. Mather, Leonor Sánchez-Busó, Andrew J. Page, Julian Parkhill, Jacqueline A. Keane, Simon R. Harris
Software Mentions: 12
Published: almost 8 years ago
10.1186/s12864-017-4429-4
Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strainsCited by: 27
Author(s): Luis A. Amador, Aline Primot, Édouard Cadieu, Alain Roulet, Frédérique Barloy-Hubler
Software Mentions: 7
Published: over 7 years ago
10.1186/1748-7188-8-25
Data compression for sequencing dataCited by: 84
Author(s): Sebastian Deorowicz, Szymon Grabowski
Software Mentions: 5
Published: over 12 years ago
10.1371/journal.pone.0181463
DUDE-Seq: Fast, flexible, and robust denoising for targeted amplicon sequencingCited by: 49
Author(s): Byunghan Lee, Taesup Moon, Sungroh Yoon, Tsachy Weissman
Software Mentions: 4
Published: about 8 years ago
10.1186/2047-217X-2-10
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate speciesCited by: 584
Author(s): Keith Bradnam, Joseph Fass, A. A. Alexandrov, Paul Baranay, Michael Bechner, İnanç Birol, Sébastien Boisvert, Jarrod Chapman, Guillaume Chapuis, Rayan Chikhi, Hamidreza Chitsaz, Wen Chi Chou, Jacques Corbeil, Cristian Del Fabbro, T. Roderick Docking, Richard Durbin, Dent Earl, Scott J. Emrich, P.I. Fedotov, Nuno A. Fonseca, Ganeshkumar Ganapathy, Richard A. Gibbs, Sante Gnerre, Élénie Godzaridis, Steve Goldstein, Matthias Haimel, Giles Hall, David Haussler, Joseph Hiatt, Isaac Ho, Jason T. Howard, Martin Hunt, Shaun D. Jackman, David B. Jaffe, Erich D. Jarvis, Huaiyang Jiang, С. В. Казаков, Paul J. Kersey, Jacob O. Kitzman, James Knight, Sergey Koren, Tak Wah Lam, Dominique Lavenier, François Laviolette, Yingrui Li, Zhenyu Li, Binghang Liu, Yue Liu, Ruibang Luo, Iain MacCallum, Matthew D. MacManes, Nicolas Maillet, Sergey Melnikov, Delphine Naquin, Zemin Ning, Thomas D. Otto, Benedict Paten, Octávio S. Paulo, Adam M. Phillippy, Francisco Pina‐Martins, Michael Place, Dariusz Przybylski, Xiang Qin, Carson Qu, Filipe J. Ribeiro, Stephen Richards, Daniel S. Rokhsar, J. Graham Ruby, Simone Scalabrin, Michael C. Schatz, David C. Schwartz, Alexey Sergushichev, Ted Sharpe, Timothy I. Shaw, Jay Shendure, Yujian Shi, Jared T. Simpson, Henry Song, Fedor Tsarev, Francesco Vezzi, Riccardo Vicedomini, Bruno Miguel Vieira, Jun Wang, Kim C. Worley, Shuangye Yin, Siu Ming Yiu, Jianying Yuan, Guojie Zhang, Hao Zhang, Shiguo Zhou, Ian F Korf
Software Mentions: 3
Published: about 12 years ago
10.1186/1471-2164-14-S1-S12
Unraveling overlapping deletions by agglomerative clusteringCited by: 5
Author(s): Roland Wittler
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0114253
PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM and Look Ahead ApproachCited by: 17
Author(s): Xiao Zhu, Ho-fung Leung, Francis Y. L. Chin, Siu Ming Yiu, Guangri Quan, Bo Liu, Yadong Wang
Software Mentions: 1
Published: over 10 years ago