Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1099/mgen.0.000131

https://doi.org/10.1099/mgen.0.000131

Cited by: 370
Author(s): Martin Hunt, Alison E. Mather, Leonor Sánchez-Busó, Andrew J. Page, Julian Parkhill, Jacqueline A. Keane, Simon R. Harris
Published: over 6 years ago

Software Mentions 12

cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
cran: minimap
Create Tile Grid Maps
Papers that mentioned: 47
pypi: ariba
ARIBA: Antibiotic Resistance Identification By Assembly
Papers that mentioned: 15
pypi: DendroPy
A Python library for phylogenetics and phylogenetic computing: reading, writing, simulation, processing and manipulation of phylogenetic trees (phylogenies) and characters.
Papers that mentioned: 119
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
pypi: fastaq
fastAQ is a very and super lightweight package for working with FASTA/FASTQ sequences
Papers that mentioned: 15
pypi: fermi
UNKNOWN
Papers that mentioned: 7
pypi: lite
Analouge Light.js on Python
Papers that mentioned: 47
pypi: minimap
"Generate minimaps of your code"
Papers that mentioned: 47
pypi: pyfastaq
Script to manipulate FASTA and FASTQ files, plus API for developers
Papers that mentioned: 1
pypi: pymummer
Wrapper for MUMmer
Papers that mentioned: 1
pypi: pysam
Package for reading, manipulating, and writing genomic data
Papers that mentioned: 130