Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: environment

https://packages.ecosyste.ms/registries/pypi.org/packages/environment

This library provides parsing and validation of environment variables.
2 versions
Latest release: over 10 years ago
3 dependent packages
2,156 downloads last month

Papers Mentioning environment 569

10.1186/1471-2105-8-446
Novel definition files for human GeneChips based on GeneAnnot
Cited by: 110
Author(s): Francesco Ferrari, Stefania Bortoluzzi, Alessandro Coppe, Alexandra Sirota, Marilyn Safran, Michael Shmoish, Sérgio Ferrari, Doron Lancet, Gian Antonio Danieli, Silvio Bicciato
Software Mentions: 4
Published: about 17 years ago
10.1371/journal.pone.0149973
Evaluating and Quantifying User and Carer Involvement in Mental Health Care Planning (EQUIP): Co-Development of a New Patient-Reported Outcome Measure
Cited by: 20
Author(s): Penny Bee, Chris Gibbons, Patrick Callaghan, Claire Fraser, Karina Lovell
Software Mentions: 4
Published: over 8 years ago
10.3389/fmicb.2019.03155
Interacting Temperature, Nutrients and Zooplankton Grazing Control Phytoplankton Size-Abundance Relationships in Eight Swiss Lakes
Cited by: 29
Author(s): Francesco Pomati, Jonathan B. Shurin, Ken Haste Andersen, Christoph Tellenbach, Andrew D. Barton
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pone.0139817
Dietary Intervention for Overweight and Obese Adults: Comparison of Low-Carbohydrate and Low-Fat Diets. A Meta-Analysis
Cited by: 161
Author(s): Jonathan Sackner‐Bernstein, David Kanter, Sanjay Kaul
Software Mentions: 4
Published: about 9 years ago
10.1186/1471-2164-15-910
Transcriptomic portrait of human Mesenchymal Stromal/Stem cells isolated from bone marrow and placenta
Cited by: 50
Author(s): Beatriz Rosón-Burgo, Fermín Sánchez‐Guijo, Consuelo del Cañizo, Javier De Las Rivas
Software Mentions: 4
Published: about 10 years ago
10.3389/fnins.2021.546312
Clear and Consistent Imaging of Hippocampal Internal Architecture With High Resolution Multiple Image Co-registration and Averaging (HR-MICRA)
Cited by: 6
Author(s): Lawrence Ver Hoef, Hrishikesh Deshpande, Joel K. Curé, Goutham Selladurai, Julia Fleming Beattie, Richard E. Kennedy, Robert C. Knowlton, Jerzy P. Szaflarski
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pone.0127292
Age Specific Survival Rates of Steller Sea Lions at Rookeries with Divergent Population Trends in the Russian Far East
Cited by: 17
Author(s): Alexey Altukhov, Russel D. Andrews, Donald G. Calkins, Thomas S. Gelatt, Eliezer Gurarie, Thomas R. Loughlin, Evgeny Mamaev, В. С. Никулин, Peter A. Permyakov, Sergey D. Ryazanov, Vladimir V. Vertyankin, Vladimir N. Burkanov
Software Mentions: 4
Published: over 9 years ago
10.1371/journal.pone.0053873
Why the Long Face? The Mechanics of Mandibular Symphysis Proportions in Crocodiles
Cited by: 82
Author(s): Christopher W. Walmsley, Peter D Smits, Michelle R. Quayle, Matthew R. McCurry, Heather S. Richards, Christopher C. Oldfield, Stephen Wroe, Philip Clausen, Colin R. McHenry
Software Mentions: 4
Published: almost 12 years ago
10.1186/1471-2415-14-122
Longitudinal stability of the diurnal rhythm of intraocular pressure in subjects with healthy eyes, ocular hypertension and pigment dispersion syndrome
Cited by: 1
Author(s): Cord Huchzermeyer, Udo Reulbach, Folkert K. Horn, Robert Laemmer, Christian Y. Mardin, Anselm Jünemann
Software Mentions: 4
Published: about 10 years ago
10.1186/s12864-016-3218-9
Use of SNP genotypes to identify carriers of harmful recessive mutations in cattle populations
Cited by: 9
Author(s): Filippo Biscarini, Hermann Schwarzenbacher, Hubert Pausch, Ezequiel Luís Nicolazzi, Yuri Pirola, Stefano Biffani
Software Mentions: 4
Published: about 8 years ago
10.1371/journal.pone.0161929
Persistence of Low Pathogenic Influenza A Virus in Water: A Systematic Review and Quantitative Meta-Analysis
Cited by: 22
Author(s): Antonia E. Dalziel, Steven Delean, Sarah Heinrich, Phillip Cassey
Software Mentions: 4
Published: about 8 years ago
10.7554/eLife.66537
Insights from a Pan India Sero-Epidemiological survey (Phenome-India Cohort) for SARS-CoV2
Cited by: 21
Author(s): Salwa Naushin, Viren Sardana, Rajat Ujjainiya, Nitin Bhatheja, Rintu Kutum, Akash Kumar Bhaskar, Shalini Pradhan, Satyartha Prakash, Raju Khan, Birendra Singh Rawat, Karthik Bharadwaj Tallapaka, Mahesh Anumalla, Giriraj R Chandak, Amit Lahiri, Susanta Kumar Kar, Shrikant R. Mulay, Madhav Nilakanth Mugale, Mrigank Srivastava, S. Muhammad Salim Khan, Anjali Srivastava, Bhawana Tomar, Murugan Veerapandian, Ganesh Venkatachalam, Selvamani Raja Vijayakumar, Ajay Agarwal, Dinesh Gupta, Prakash M. Halami, Muthukumar Serva Peddha, Gopinath M Sundaram, Ravindra P. Veeranna, Anirban Pal, Vinay Agarwal, Anil Ku Maurya, Ranvijay Singh, Ashok Kumar Raman, Suresh Kumar Anandasadagopan, Parimala Karuppanan, S. Venkatesan, Harish Kumar Sardana, Anamika Kothari, Rishabh Jain, Anupma Thakur, Devendra Singh Parihar, Anas Saifi, Jasleen Kaur, Virendra Kumar, Avinash Mishra, Iranna Gogeri, Geethavani Rayasam, Praveen Singh, Rahul Chakraborty, Gaura Chaturvedi, Pinreddy Karunakar, Rohit Yadav, Sunanda Singhmar, Deeksha Singh, Sharmistha Sarkar, Paramita Bhattacharya, Sundaram Acharya, Vandana Singh, Shweta Jain Verma, Drishti Soni, Surabhi Seth, Sakshi Vashisht, Sarita Thakran, Firdaus Fatima, Akash Kumar Singh, Akanksha Sharma, Babita Sharma, Manikandan Subramanian, Yogendra Padwad, Vipin Hallan, Vikram Patial, Damanpreet Singh, Narendra Vijay Tripude, Partha Chakrabarti, Sujay Krishna Maity, Dipyaman Ganguly, Jit Sarkar, Ramakrishna Sistla, Balthu Narender Kumar, Kiran A Kumar, Sumit G. Gandhi, Piyush Singh Jamwal, Rekha Chouhan, Vijay Lakshmi Jamwal, Nitika Kapoor, Debashish Ghosh, Ghanshyam Thakkar, Umakanta Subudhi, Pradip Sen, Saumya Ray Chaudhury, Rashmi Kumar, Pawan Gupta, Amit Tuli, Deepak Sharma, Rajesh P. Ringe, D Amarnarayan, Mahesh Kulkarni, Dhansekaran Shanmugam, Mahesh Dharne, Sayed G Dastager, Rakesh S. Joshi, Amita P Patil, Sachin Mahajan, Abujunaid Habib Khan, Vasudev S. Wagh, Rakesh Kumar Yadav, Ajinkya Khilari, Mayuri Bhadange, Arvindkumar H. Chaurasiya, Shabda E Kulsange, Krishna Khairnar, Shilpa Paranjape, Jatin Kalita, Narahari G Sastry, Tridip Phukan, Prasenjit Manna, Wahengbam Romi, Pankaj Bharali, Dibyajyoti Ozah, Ravi Kumar Sahu, E. V. S. S. K. Babu, Rajeev Sukumaran, Aiswarya R Nair, Prajeesh Kooloth Valappil, Anoop Puthiyamadam, Adarsh Velayudhanpillai, Kalpana Chodankar, Samir Damare, Yennapu Madhavi, V. Aggarwal, Sumit Dahiya, Anurag Agrawal, Debasis Dash, Shantanu Sengupta
Software Mentions: 4
Published: over 3 years ago
10.3390/cancers13051007
A Lung Organotypic Coculture Reveals a Role for TFEB-Lysosomal Axis in the Survival of Disseminated Dormant Cancer Cells
Cited by: 5
Author(s): Manuela Zangrossi, Probir Chakravarty, Patrizia Romani, Sirio Dupont, Steven Hooper, Erik Sahai, Marco Montagner
Software Mentions: 4
Published: over 3 years ago
10.1186/s12967-020-02415-8
MicroRNA-181a as novel liquid biopsy marker of central nervous system involvement in pediatric acute lymphoblastic leukemia
Cited by: 16
Author(s): Bálint Egyed, Nóra Kutszegi, Judit C. Sági, András Gézsi, Andrea Rzepiel, Tamás Visnovitz, Péter Lőrincz, Judit Müller, Marianna Zombori, Csaba Szalai, Dániel Erdélyi, Gabòr Kovàcs, Ágnes F. Semsei
Software Mentions: 4
Published: over 4 years ago
10.1515/jib-2020-0005
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
Cited by: 17
Author(s): Dagmar Waltemath, Martin Golebiewski, Michael L. Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M. Keating, Matthias König, Olga Krebs, Rahuman S. Malik Sheriff, David Nickerson, Ernst Oberortner, Herbert M. Sauro, Falk Schreiber, Lucian P. Smith, Melanie I. Stefan, Ulrike Wittig, Chris J. Myers
Software Mentions: 4
Published: over 4 years ago
10.7554/eLife.58597
The leukocyte non-coding RNA landscape in critically ill patients with sepsis
Cited by: 28
Author(s): Brendon P. Scicluna, Fabrice Uhel, Lonneke A. van Vught, Maryse A. Wiewel, Arie J. Hoogendijk, Ingelore Baessman, Marek Franitza, Peter Nürnberg, Janneke Horn, Olaf L. Cremer, Marc J. M. Bonten, Marcus J. Schultz, Tom van der Poll
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pone.0253009
miR-361-5p as a promising qRT-PCR internal control for tumor and normal breast tissues
Cited by: 4
Author(s): Sogol Ghanbari, Adel Salimi, Saeid Rahmani, Nahid Nafissi, Ali Sharifi‐Zarchi, Seyed Javad Mowla
Software Mentions: 4
Published: over 3 years ago
10.1186/1755-8794-7-28
Integrative analysis of the transcriptome profiles observed in type 1, type 2 and gestational diabetes mellitus reveals the role of inflammation
Cited by: 27
Author(s): Adriane Feijó Evangelista, Cristhianna V. A. Collares, Deise Ferreira Xavier, Cristiana Santos de Macedo, Fernanda S. Manoel-Caetano, Diane Meyre Rassi, Maria Cristina Foss‐Freitas, Milton César Foss, Elza T. Sakamoto-Hojo, Catherine Nguyen, Denis Puthier, Geraldo A. S. Passos, Eduardo Antônio Donadi
Software Mentions: 3
Published: over 10 years ago
10.1007/s00122-019-03386-1
Combining grain yield, protein content and protein quality by multi-trait genomic selection in bread wheat
Cited by: 28
Author(s): Sebastian Michel, Franziska Löschenberger, Christian Ametz, Bernadette Pachler, Ellen Sparry, Hermann Buerstmayr
Software Mentions: 3
Published: over 5 years ago
10.1186/s13044-015-0020-8
Iodine intake as a risk factor for thyroid cancer: a comprehensive review of animal and human studies
Cited by: 164
Author(s): Michael Zimmermann, Valeria Galetti
Software Mentions: 3
Published: over 9 years ago
10.1002/ajhb.22825
Disentangling the associations between parental BMI and offspring body composition using the four‐component model
Cited by: 9
Author(s): Delan Devakumar, Carlos Grijalva-Eternod, Mario Cortina‐Borja, Jane Williams, Mary Fewtrell, Jonathan C. K. Wells
Software Mentions: 3
Published: almost 9 years ago
10.1186/s12920-017-0301-2
Analysis of viral diversity for vaccine target discovery
Cited by: 12
Author(s): Mohammad Asif Khan, Yongli Hu, Olivo Miotto, Natascha May Thevasagayam, Rashmi Sukumaran, Hadia Syahirah Abd Raman, Vladimir Brusic, Tin Wee Tan, J. Thomas August
Software Mentions: 3
Published: almost 7 years ago
10.1074/mcp.RA120.002094
Benefits of Collisional Cross Section Assisted Precursor Selection (caps-PASEF) for Cross-linking Mass Spectrometry
Cited by: 31
Author(s): Babara Steigenberger, Henk van den Toorn, E. van der Bijl, Jean‐François Greisch, Oliver Räther, Markus Lubeck, Roland J. Pieters, Albert J. R. Heck, Richard A. Scheltema
Software Mentions: 3
Published: about 4 years ago
10.1007/s00122-017-2998-x
Improving the baking quality of bread wheat by genomic selection in early generations
Cited by: 58
Author(s): Sebastian Michel, Christian Kummer, Martin Gallee, Jakob Hellinger, Christian Ametz, Batuhan Akgöl, Doru Gabriel Epure, Franziska Löschenberger, Hermann Buerstmayr
Software Mentions: 3
Published: about 7 years ago
10.1186/1471-2105-14-18
JContextExplorer: a tree-based approach to facilitate cross-species genomic context comparison
Cited by: 9
Author(s): Phillip Seitzer, Tu Anh Ngoc Huynh, Marc T. Facciotti
Software Mentions: 3
Published: almost 12 years ago
10.1007/s11306-014-0727-x
Predicting retention time in hydrophilic interaction liquid chromatography mass spectrometry and its use for peak annotation in metabolomics
Cited by: 76
Author(s): Mingshu Cao, Karl Fraser, Jan Huege, Tom Featonby, Susanne Rasmussen, Chris S. Jones
Software Mentions: 3
Published: about 10 years ago
10.3390/s141122039
IoT-Based User-Driven Service Modeling Environment for a Smart Space Management System
Cited by: 19
Author(s): Hoan-Suk Choi, Woo-Seop Rhee
Software Mentions: 3
Published: about 10 years ago
10.1111/ijfs.14403
Bioactive constituents, <i>in vitro</i> radical scavenging and antibacterial activities of selected <i>Apis mellifera</i> honey from Kenya
Cited by: 26
Author(s): Hosea O. Mokaya, Joel L. Bargul, Janet Irungu, H. Michael G. Lattorff
Software Mentions: 3
Published: about 5 years ago
10.1038/s41598-019-50718-8
The role of extracellular matrix in mouse and human corneal neovascularization
Cited by: 19
Author(s): Marco Barbariga, F. Vallone, Ettore Mosca, Fabio Bignami, Cinzia Magagnotti, Phillippe Fonteyne, Federica Chiappori, Luciano Milanesi, Paolo Rama, Annapaola Andolfo, Giulio Ferrari
Software Mentions: 3
Published: about 5 years ago
10.1038/s41598-020-65158-y
Reciprocal semantic predictions drive categorization of scene contexts and objects even when they are separate
Cited by: 7
Author(s): Anaïs Leroy, Sylvane Faure, Sara Spotorno
Software Mentions: 3
Published: over 4 years ago
10.15252/emmm.201911756
Cancer of Unknown Primary ( <scp>CUP</scp> ): genetic evidence for a novel nosological entity? A case report
Cited by: 8
Author(s): Silvia Benvenuti, Melissa Milan, Elena Geuna, Alberto Pisacane, Rebecca Senetta, Gennaro Gambardella, Giulia Maria Stella, Filippo Montemurro, Anna Sapino, Carla Boccaccio, Paolo M. Comoglio
Software Mentions: 3
Published: over 4 years ago
10.1107/S2059798320014114
The low-cost Shifter microscope stage transforms the speed and robustness of protein crystal harvesting
Cited by: 13
Author(s): Nathan Wright, P. Collins, L. Koekemoer, T. Krojer, R. Talon, Elliot R Nelson, Mingda Ye, Radosław P. Nowak, Joseph Newman, Jia Tsing Ng, Nick Mitrovich, Helton Wiggers, F. von Delft
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0226985
What nature separated, and human joined together: About a spontaneous hybridization between two allopatric dogwood species (Cornus controversa and C. alternifolia)
Cited by: 3
Author(s): Barbara Gawrońska, Maria Morozowska, Katarzyna Nuc, Piotr Kosiński, Ryszard Słomski
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41598-018-32020-1
Structural robustness of mammalian transcription factor networks reveals plasticity across development
Cited by: 3
Author(s): José Luis Caldú-Primo, Elena Álvarez-Buylla, José Dávila-Velderrain
Software Mentions: 3
Published: about 6 years ago
10.3390/biomedicines9030249
In Silico Drug Repurposing by Structural Alteration after Induced Fit: Discovery of a Candidate Agent for Recovery of Nucleotide Excision Repair in Xeroderma Pigmentosum Group D Mutant (R683W)
Cited by: 4
Author(s): Yutaka Takaoka, Mika Ohta, Seiichiro Tateishi, Aki Sugano, Eiji Nakano, Kenji Miura, Takashi Suzuki, Chikako Nishigori
Software Mentions: 3
Published: over 3 years ago
10.1186/s12864-018-4479-2
Consequences of early life stress on genomic landscape of H3K4me3 in prefrontal cortex of adult mice
Cited by: 20
Author(s): Nikita I. Ershov, Natalia P. Bondar, Arina A. Lepeshko, Vasiliy V. Reshetnikov, Julia A. Ryabushkina, T. I. Merkulova
Software Mentions: 3
Published: almost 7 years ago
10.1038/s42003-020-01582-0
Curbing gastrointestinal infections by defensin fragment modifications without harming commensal microbiota
Cited by: 4
Author(s): Louis Koeninger, Lisa Osbelt, Anne Berscheid, Judith Wendler, Jürgen Berger, Katharina Hipp, Till Robin Lesker, Marina C. Pils, Nisar P. Malek, Benjamin Anderschou Holbech Jensen, Heike Brötz‐Oesterhelt, Till Strowig, Jan Wehkamp
Software Mentions: 3
Published: almost 4 years ago
10.3390/cells9051107
Ginsenoside Rg1 Acts as a Selective Glucocorticoid Receptor Agonist with Anti-Inflammatory Action without Affecting Tissue Regeneration in Zebrafish Larvae
Cited by: 17
Author(s): Min He, Mahmoud Halima, Yujia Xie, Marcel J. M. Schaaf, Annemarie H. Meijer, Mei Wang
Software Mentions: 3
Published: over 4 years ago
10.1042/BSR20193377
Identification of hub genes related to prognosis in glioma
Cited by: 4
Author(s): De‐Long Zhang, Jinxin Zhao, Chengzheng Han, Xiaocen Liu, Jun Li, Hui Yang
Software Mentions: 3
Published: over 4 years ago
10.1007/s12559-021-09908-8
Mining Knowledge of Respiratory Rate Quantification and Abnormal Pattern Prediction
Cited by: 3
Author(s): Piotr Szczuko, Adam Kurowski, Piotr Odya, Andrzej Czyżewski, Bożena Kostek, Beata Graff, Krzysztof Narkiewicz
Software Mentions: 3
Published: over 3 years ago
10.1002/ece3.4604
UV bullseye contrast of<i>Hemerocallis</i>flowers attracts hawkmoths but not swallowtail butterflies
Cited by: 11
Author(s): Shun K. Hirota, Nozomu Miki, Akiko A. Yasumoto, Tetsukazu Yahara
Software Mentions: 3
Published: almost 6 years ago
10.1038/s41598-020-79082-8
Human extrahepatic and intrahepatic cholangiocyte organoids show region-specific differentiation potential and model cystic fibrosis-related bile duct disease
Cited by: 37
Author(s): Monique M A Verstegen, Floris J.M. Roos, Ksenia Burka, Helmuth Gehart, Myrthe Jager, Maaike de Wolf, Marcel J. C. Bijvelds, Hugo R. de Jonge, Arif Ibrahim Ardisasmita, Nick A. van Huizen, Henk P. Roest, Jeroen de Jonge, Michael Koch, Francesco Pampaloni, Sabine A. Fuchs, Imre F. Schene, Theo M. Luider, Hubert P.J. van der Doef, Frank Bodewes, Ruben H J de Kleine, Bart Spee, Gert‐Jan Kremers, Hans Clevers, Jan N. M. IJzermans, Edwin Cuppen, Luc J. W. van der Laan
Software Mentions: 3
Published: almost 4 years ago
10.3390/ijerph16081353
Adaptation and Health: Are Countries with More Climate-sensitive Health Sectors More Likely to Receive Adaptation Aid?
Cited by: 1
Author(s): Florian Weiler
Software Mentions: 3
Published: over 5 years ago
10.1192/pb.bp.113.044321
Does a home treatment acute relapse prevention strategy reduce admissions for people with mania in bipolar affective disorder?
Cited by: 0
Author(s): Claudia Murton, Mick Cooper, Stephen Dinniss, Shon Roberts, Nicola Booth, Paul Newell
Software Mentions: 3
Published: almost 10 years ago
10.1186/s12864-017-4285-2
ENCoRE: an efficient software for CRISPR screens identifies new players in extrinsic apoptosis
Cited by: 15
Author(s): Dietrich Trümbach, Susanne Pfeiffer, Manuel Poppe, Hagen Scherb, Sebastian Doll, Wolfgang Wurst, Joel Schick
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12859-020-03845-3
Validation of a yellow fever vaccine model using data from primary vaccination in children and adults, re-vaccination and dose-response in adults and studies with immunocompromised individuals
Cited by: 3
Author(s): Carla Rezende Barbosa Bonin, Guilherme Côrtes Fernandes, Reinaldo de Menezes Martins, Luiz Antônio Bastos Camacho, Andréa Teixeira-Carvalho, Lícia Maria Henrique da Mota, Sheila Maria Barbosa de Lima, Ana Carolina Campi-Azevedo, Olindo Assis Martins‐Filho, Rodrigo Weber dos Santos, Marcelo Lobosco
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0124146
The Role of Temporal Abundance Structure and Habitat Preferences in the Survival of Conodonts during the Mid-Early Silurian Ireviken Mass Extinction Event
Cited by: 13
Author(s): Andrej Spiridonov, Antanas Brazauskas, Sigitas Radzevičius
Software Mentions: 3
Published: over 9 years ago
10.1016/j.prevetmed.2012.01.017
A Bayesian elicitation of veterinary beliefs regarding systemic dry cow therapy: Variation and importance for clinical trial design
Cited by: 12
Author(s): Helen M. Higgins, Ian L. Dryden, Martin J. Green
Software Mentions: 3
Published: about 12 years ago
10.1007/s11145-015-9608-6
Vocabulary does not complicate the simple view of reading
Cited by: 77
Author(s): David Braze, Leonard Katz, James S. Magnuson, W. Einar Mencl, Whitney Tabor, Julie A. Van Dyke, Tao Gong, Clinton L. Johns, Donald Shankweiler
Software Mentions: 3
Published: almost 9 years ago
10.1155/2016/8313272
Correlation-Based Network Generation, Visualization, and Analysis as a Powerful Tool in Biological Studies: A Case Study in Cancer Cell Metabolism
Cited by: 66
Author(s): Albert Batushansky, David Toubiana, Aaron Fait
Software Mentions: 3
Published: almost 9 years ago
10.1371/journal.pone.0139711
TLR1, 2, 4, 6 and 9 Variants Associated with Tuberculosis Susceptibility: A Systematic Review and Meta-Analysis
Cited by: 74
Author(s): Haiko Schurz, Michelle Daya, Marlo Möller, Eileen G. Hoal, Muneeb Salie
Software Mentions: 3
Published: about 9 years ago
10.1371/journal.ppat.1005672
A Novel Mechanism of Host-Pathogen Interaction through sRNA in Bacterial Outer Membrane Vesicles
Cited by: 297
Author(s): Katja Koeppen, Thomas H. Hampton, Michael Jarek, Maren Scharfe, Scott A. Gerber, Daniel W. Mielcarz, Elora G. Demers, Emily L. Dolben, John H. Hammond, Deborah A. Hogan, Bruce A. Stanton
Software Mentions: 3
Published: over 8 years ago
10.3390/cancers13030439
Retrospective Validation of a 168-Gene Expression Signature for Glioma Classification on a Single Molecule Counting Platform
Cited by: 4
Author(s): Paul Tran, Lynn Tran, Khaled Bin Satter, Sharad Purohit, John Nechtman, Diane Hopkins, Bruno dos Santos, Roni J. Bollag, Ravindra Kolhe, Suash Sharma, Jin‐Xiong She
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0150644
Net Assimilation Rate Determines the Growth Rates of 14 Species of Subtropical Forest Trees
Cited by: 27
Author(s): Xuefei Li, Bernhard Schmid, Fei Wang, C. E. Timothy Paine
Software Mentions: 3
Published: over 8 years ago
10.1186/s12284-018-0257-7
Salinity tolerance in Australian wild Oryza species varies widely and matches that observed in O. sativa
Cited by: 31
Author(s): Yoav Yichie, Chris Brien, Bettina Berger, Thomas H. Roberts, Brian J. Atwell
Software Mentions: 3
Published: almost 6 years ago
10.3390/insects11110820
Transcriptomics-Based Approach Identifies Spinosad-Associated Targets in the Colorado Potato Beetle, Leptinotarsa decemlineata
Cited by: 10
Author(s): Pierre Bastarache, Gabriel Wajnberg, Pascal Dumas, Simi Chacko, Jacynthe Lacroix, Nicolas Crapoulet, Chandra E. Moffat, Pier Jr Morin
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0145322
Differentially Expressed Genes and Signature Pathways of Human Prostate Cancer
Cited by: 31
Author(s): Jennifer S. Myers, Ariana von Lersner, Charles J. Robbins, Qing‐Xiang Amy Sang
Software Mentions: 3
Published: almost 9 years ago
10.1371/journal.pone.0165312
RNA-Seq Transcriptomic Responses of Full-Thickness Dermal Excision Wounds to Pseudomonas aeruginosa Acute and Biofilm Infection
Cited by: 11
Author(s): S. L. Rajasekhar Karna, Peter D’Arpa, Tsute Chen, Liwu Qian, Andrea B Fourcaudot, Kazuyoshi Yamane, Ping Chen, Johnathan J. Abercrombie, Tao You, Kai P. Leung
Software Mentions: 3
Published: about 8 years ago
10.1371/journal.pone.0222952
Concordance between gene expression in peripheral whole blood and colonic tissue in children with inflammatory bowel disease
Cited by: 27
Author(s): Nathan Palmer, Jocelyn A. Silvester, Jessica J. Lee, Andrew L. Beam, Inbar Fried, Vladimir I. Valtchinov, Fedik Rahimov, Sek Won Kong, Saum Ghodoussipour, Helen C. Hood, Athos Bousvaros, Richard J. Grand, Louis M. Kunkel, Isaac S. Kohane
Software Mentions: 3
Published: about 5 years ago
10.1172/jci.insight.145704
Identification of a series of hair-cell MET channel blockers that protect against aminoglycoside-induced ototoxicity
Cited by: 21
Author(s): Emma J. Kenyon, Nerissa K. Kirkwood, Siân R. Kitcher, Richard J. Goodyear, Marco Derudas, Daire Cantillon, Sarah Baxendale, Antonio de la Vega de León, Virginia N. Mahieu, Richard T. Osgood, Charlotte Donald Wilson, James C. Bull, Simon J. Waddell, Tanya T. Whitfield, Simon E. Ward, Corné J. Kros, Guy P. Richardson
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pntd.0006248
Host preferences support the prominent role of Hyalomma ticks in the ecology of Crimean-Congo hemorrhagic fever
Cited by: 41
Author(s): Jessica R. Spengler, Agustı́n Estrada-Peña
Software Mentions: 3
Published: almost 7 years ago
10.3390/genes12020185
Graph Algorithms for Mixture Interpretation
Cited by: 4
Author(s): Benjamin Crysup, August E. Woerner, Jonathan L. King, Bruce Budowle
Software Mentions: 3
Published: almost 4 years ago
10.1186/1752-0509-4-124
Molecular mechanistic associations of human diseases
Cited by: 11
Author(s): Philip Stegmaier, Mathias Krull, Nico Voss, Alexander Kel, Edgar Wingender
Software Mentions: 3
Published: about 14 years ago
10.1371/journal.pone.0216273
An integrative assessment of the diversity, phylogeny, distribution, and conservation of the terrestrial reptiles (Sauropsida, Squamata) of the United Arab Emirates
Cited by: 13
Author(s): Bernat Burriel-Carranza, Pedro Tarroso, Johannes Els, Alex Gardner, Pritpal S. Soorae, Ali A. Mohammed, Sai Ravi Krishna Tubati, Mohamed M. Eltayeb, Junid N. Shah, Héctor Tejero‐Cicuéndez, Marc Simó‐Riudalbas, Juan M. Pleguezuelos, Daniel Fernández-Guiberteau, Jiři Šmı́d, Salvador Carranza
Software Mentions: 3
Published: over 5 years ago
10.1186/1471-2458-13-455
Baseline predictors of treatment outcome in Internet-based alcohol interventions: a recursive partitioning analysis alongside a randomized trial
Cited by: 12
Author(s): Matthijs Blankers, Maarten W. J. Koeter, Gerard M. Schippers
Software Mentions: 3
Published: over 11 years ago
10.1534/g3.114.013870
Whole-Genome Expression Analysis in the Third Instar Larval Midgut of <i>Drosophila melanogaster</i>
Cited by: 25
Author(s): Thomas W. R. Harrop, Stephen L. Pearce, Phillip J. Daborn, Philip Batterham
Software Mentions: 3
Published: about 10 years ago
10.1186/gb-2008-9-12-r181
Male reproductive development: gene expression profiling of maize anther and pollen ontogeny
Cited by: 89
Author(s): Junjun Ma, David S. Skibbe, John Fernandes, Virginia Walbot
Software Mentions: 3
Published: almost 17 years ago
10.3390/jcdd6010007
Temporal Change of Extracellular Matrix during Vein Arterialization Remodeling in Rats
Cited by: 1
Author(s): Ayumi Aurea Miyakawa, Vinícius Bassaneze, Nubia Esteban Duarte, Thais Girão-Silva, Monica Nunes Bizerra, Julliana Carvalho de Campos, José Eduardo Krieger
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pbio.2006760
Spikeling: A low-cost hardware implementation of a spiking neuron for neuroscience teaching and outreach
Cited by: 4
Author(s): Tom Baden, Ben James, Maxime Zimmermann, Philipp Bartel, Dorieke M Grijseels, Thomas Euler, Leon Lagnado, Miguel Maravall
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0236336
Detection of latent forms of Mycobacterium avium subsp. paratuberculosis infection using host biomarker-based ELISAs greatly improves paratuberculosis diagnostic sensitivity
Cited by: 20
Author(s): Cristina Blanco Vázquez, Marta Alonso‐Hearn, Ramón A. Juste, María Canive, Tania Iglesias, Natàlia Iglesias, Javier Amado, F. Vicente, Ana Balseiro, Rosa Casáis
Software Mentions: 3
Published: about 4 years ago
10.3389/fpls.2016.01528
Invasive Shrub Mapping in an Urban Environment from Hyperspectral and LiDAR-Derived Attributes
Cited by: 29
Author(s): Curtis M. Chance, Nicholas C. Coops, Andrew Plowright, Thoreau Rory Tooke, Andreas Christen, Neal W. Aven
Software Mentions: 3
Published: about 8 years ago
10.3389/fpls.2020.595439
Effect of Rice GDP-L-Galactose Phosphorylase Constitutive Overexpression on Ascorbate Concentration, Stress Tolerance, and Iron Bioavailability in Rice
Cited by: 12
Author(s): Ronan C. Broad, Julien Bonneau, Jesse T. Beasley, S Roden, Paweł Sadowski, Nathaniel Jewell, Chris Brien, Bettina Berger, Elad Tako, Raymond P. Glahn, Roger P. Hellens, Alexander Johnson
Software Mentions: 3
Published: almost 4 years ago
10.1186/1744-8603-10-4
Government capacities and stakeholders: what facilitates ehealth legislation?
Cited by: 15
Author(s): Achim Lang
Software Mentions: 3
Published: almost 11 years ago
10.1371/journal.pone.0127002
The Ordinal Effects of Ostracism: A Meta-Analysis of 120 Cyberball Studies
Cited by: 323
Author(s): Chris Hartgerink, Ilja van Beest, Jelte M. Wicherts, Kipling D. Williams
Software Mentions: 3
Published: over 9 years ago
10.3389/fonc.2021.657466
m5C RNA Methylation Regulators Predict Prognosis and Regulate the Immune Microenvironment in Lung Squamous Cell Carcinoma
Cited by: 51
Author(s): Junfan Pan, Zhidong Huang, Yiquan Xu
Software Mentions: 3
Published: over 3 years ago
10.7717/peerj.4047
Evaluation of potential reference genes for real-time qPCR analysis in a biparental beetle,<i>Lethrus apterus</i>(Coleoptera: Geotrupidae)
Cited by: 17
Author(s): Nikolett Nagy, Zoltán Németh, Edit Juhász, Szilárd Póliska, R. Rácz, András Kosztolányi, Zoltán Barta
Software Mentions: 3
Published: almost 7 years ago
10.3389/fvets.2018.00236
Enhanced Selection of Assistance and Explosive Detection Dogs Using Cognitive Measures
Cited by: 45
Author(s): Evan L. MacLean, Brian Hare
Software Mentions: 3
Published: about 6 years ago
10.3389/fmicb.2016.00143
Improved Environmental Genomes via Integration of Metagenomic and Single-Cell Assemblies
Cited by: 22
Author(s): Daniel R. Mende, Frank O. Aylward, John M. Eppley, Torben Nielsen, Edward F. DeLong
Software Mentions: 3
Published: almost 9 years ago
10.1186/1471-2105-10-50
EMMA 2 – A MAGE-compliant system for the collaborative analysis and integration of microarray data
Cited by: 66
Author(s): Michael Dondrup, Stefan P. Albaum, Thasso Griebel, Kolja Henckel, Sebastian Jünemann, Tim Kahlke, Christiane Katja Kleindt, H. Küster, Burkhard Linke, Dominik Mertens, Virginie Mittard-Runte, Heiko Neuweger, Kai J. Runte, Andreas Tauch, Felix Tille, Alfred Pühler, Alexander Goesmann
Software Mentions: 3
Published: almost 16 years ago
10.7717/peerj.8913
Understanding the spread of de novo and transmitted macrolide-resistance in <i>Mycoplasma genitalium</i>
Cited by: 7
Author(s): Dominique Cadosch, Victor García, Jørgen Skov Jensen, Nicola Low, Christian L. Althaus
Software Mentions: 3
Published: over 4 years ago
10.1186/1471-2229-14-185
Genome-wide analysis reveals divergent patterns of gene expression during zygotic and somatic embryo maturation of Theobroma cacaoL., the chocolate tree
Cited by: 25
Author(s): Siela N. Maximova, Sergio Florez, Xiangling Shen, Nicolas Niemenak, Yufan Zhang, Wayne R. Curtis, Mark J. Guiltinan
Software Mentions: 3
Published: over 10 years ago
10.7717/peerj.873
Models of knot and stem development in black spruce trees indicate a shift in allocation priority to branches when growth is limited
Cited by: 12
Author(s): Emmanuel Duchâteau, David Auty, Frédéric Mothe, Fleur Longuetaud, Chhun-Huor Ung, Alexis Achim
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0090178
An Integrative Analysis of the Dynamics of Landscape- and Local-Scale Colonization of Mediterranean Woodlands by Pinus halepensis
Cited by: 10
Author(s): Efrat Sheffer, Charles D. Canham, Jaime Kigel, Avi Perevolotsky
Software Mentions: 3
Published: over 10 years ago
10.1371/journal.pone.0073573
Altered Expression of Cyclin A 1 In Muscle of Patients with Facioscapulohumeral Muscle Dystrophy (FSHD-1)
Cited by: 9
Author(s): Anna Pakuła, Joanna Schneider, Jürgen Janke, Ute Zacharias, Herbert Schulz, Norbert Hübner, Anja Mähler, Andreas Spuler, Simone Spuler, Pierre Carlier, Michael Boschmann
Software Mentions: 3
Published: about 11 years ago
10.1371/journal.pone.0203687
Computational prediction of changes in brain metabolic fluxes during Parkinson’s disease from mRNA expression
Cited by: 10
Author(s): Farahaniza Supandi, Hans van Beek
Software Mentions: 3
Published: about 6 years ago
10.3389/fmicb.2020.00745
Gross N2O Production Process, Not Consumption, Determines the Temperature Sensitivity of Net N2O Emission in Arable Soil Subject to Different Long-Term Fertilization Practices
Cited by: 7
Author(s): Chang Yin, Xiaoping Fan, Guochao Yan, Hao Chen, Mujun Ye, Liang Ni, Hongxia Peng, Ran Wei, Yanfang Zhao, Tingqiang Li, Steve Wakelin, Yongchao Liang
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0090032
Infectious Diseases and Their Outbreaks in Asia-Pacific: Biodiversity and Its Regulation Loss Matter
Cited by: 81
Author(s): Serge Morand, Sathaporn Jittapalapong, Yupin Suputtamongkol, Mohd Tajuddin Abdullah, Tan Boon Huan
Software Mentions: 3
Published: over 10 years ago
10.1371/journal.pone.0194583
RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model
Cited by: 37
Author(s): Hosna Jabbari, Ian William Wark, Carlo Montemagno
Software Mentions: 3
Published: over 6 years ago
10.1155/2013/512086
Systems Approaches Evaluating the Perturbation of Xenobiotic Metabolism in Response to Cigarette Smoke Exposure in Nasal and Bronchial Tissues
Cited by: 46
Author(s): Anita Iskandar, Florian Martin, Marja Talikka, Walter K. Schlage, Radina Kostadinova, Carole Mathis, Julia Hoeng, Manuel C. Peitsch
Software Mentions: 3
Published: almost 12 years ago
10.1186/1471-2407-8-107
Two-dimensional electrophoretic comparison of metastatic and non-metastatic human breast tumors using in vitrocultured epithelial cells derived from the cancer tissues
Cited by: 19
Author(s): Jan Vydra, Irena Selicharová, Kateřina Smutná, Miloslav Šanda, Eva Matoušková, Eva Buršíková, Markéta Prchalová, Z Velenská, David Coufal, Jiřı́ Jiráček
Software Mentions: 3
Published: over 16 years ago
10.3389/fimmu.2014.00040
VH Replacement Footprint Analyzer-I, a Java-Based Computer Program for Analyses of Immunoglobulin Heavy Chain Genes and Potential VH Replacement Products in Human and Mouse
Cited by: 5
Author(s): Lin Huang, Miles D. Lange, Zhixin Zhang
Software Mentions: 3
Published: almost 11 years ago
10.3389/fgene.2018.00678
A Sex-Stratified Genome-Wide Association Study of Tuberculosis Using a Multi-Ethnic Genotyping Array
Cited by: 20
Author(s): Haiko Schurz, Craig Kinnear, Chris Gignoux, Genevieve L. Wojcik, Paul D. van Helden, Gerard Tromp, Brenna M. Henn, Eileen G. Hoal, Marlo Möller
Software Mentions: 3
Published: almost 6 years ago
10.1051/parasite/2018017
A tripartite survey of hyperparasitic fungi associated with ectoparasitic flies on bats (Mammalia: Chiroptera) in a neotropical cloud forest in Panama
Cited by: 21
Author(s): Melissa J. Walker, Annabel Dorrestein, Jasmin Camacho, Lauren A. Meckler, Kirk A. Silas, Thomas Hiller, Danny Haelewaters
Software Mentions: 3
Published: almost 7 years ago
10.3389/fncel.2016.00230
Altered Expression of Genes Encoding Neurotransmitter Receptors in GnRH Neurons of Proestrous Mice
Cited by: 32
Author(s): Csaba Vastagh, Annie Rodolosse, Norbert Solymosi, Zsolt Liposits
Software Mentions: 3
Published: about 8 years ago
10.3389/fgene.2021.625335
Accounting for Genetic Differences Among Unknown Parents in Bubalus bubalis: A Case Study From the Italian Mediterranean Buffalo
Cited by: 2
Author(s): Mayra Gómez, Dario Rossi, Roberta Cimmino, G. Zullo, Yuri Gombia, Damiano Altieri, R. Di Palo, Stefano Biffani
Software Mentions: 3
Published: almost 4 years ago
10.1371/journal.pone.0140359
Enhancements to the Rosetta Energy Function Enable Improved Identification of Small Molecules that Inhibit Protein-Protein Interactions
Cited by: 20
Author(s): Andrea Bazzoli, Simon Kelow, John Karanicolas
Software Mentions: 3
Published: about 9 years ago
10.12688/wellcomeopenres.9892.2
COMPASS: Continuous Open Mouse Phenotyping of Activity and Sleep Status
Cited by: 41
Author(s): L. M. Brown, Sibah Hasan, Russell G. Foster, Stuart N. Peirson
Software Mentions: 3
Published: over 7 years ago
10.1155/2013/263757
Metabolomic Analysis of Complex Chinese Remedies: Examples of Induced Nephrotoxicity in the Mouse from a Series of Remedies Containing Aristolochic Acid
Cited by: 13
Author(s): Dai-Hua Tsai, Jaw Jou Kang, Shoei‐Sheng Lee, San-Yuan Wang, I‐Lin Tsai, Guan-Yuan Chen, Hsiao-Wei Liao, Wei-Chu Li, Ching‐Hua Kuo, Yufeng J. Tseng
Software Mentions: 3
Published: almost 12 years ago
10.1371/journal.pone.0042044
Identification of Learning Mechanisms in a Wild Meerkat Population
Cited by: 45
Author(s): William Hoppitt, Jamie Samson, Kevin N. Laland, Alex Thornton
Software Mentions: 3
Published: over 12 years ago
10.1371/journal.pone.0108491
What Determines the Duration of War? Insights from Assessment Strategies in Animal Contests
Cited by: 17
Author(s): Mark Briffa
Software Mentions: 3
Published: about 10 years ago