Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: dryad

https://packages.ecosyste.ms/registries/pypi.org/packages/dryad

A pipeline to construct reference free core-genome or SNP phylogenetic trees for examining prokaryote relatedness in outbreaks.
3 versions
Latest release: about 4 years ago
21 downloads last month

Papers Mentioning dryad 20

Epiphytic diatom community structure and richness is determined by macroalgal host and location in the South Shetland Islands (Antarctica)
Cited by: 3
Author(s): Andrea M. Burfeid-Castellanos, Rafael P. Martín–Martín, Michael Kloster, Carlos Angulo‐Preckler, Conxita Àvila, Bánk Beszteri
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pgen.1009492

A structural signature motif enlightens the origin and diversification of nuclear receptors
Cited by: 8
Author(s): Brice Beinsteiner, Gabriel V. Markov, Stéphane Erb, Yassmine Chebaro, A.G. McEwen, Sarah Cianférani, Vincent Laudet, Dino Moras, I. M. L. Billas
Software Mentions: 6
Published: over 3 years ago

10.1093/bioinformatics/btv276

Phylesystem: a git-based data store for community-curated phylogenetic estimates
Cited by: 31
Author(s): Emily Jane McTavish, Cody E. Hinchliff, James F. Allman, Joseph W. Brown, Karen Cranston, Mark T. Holder, Jonathan Rees, Stephen A. Smith
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0236717

Genetic diversity, relatedness and inbreeding of ranched and fragmented Cape buffalo populations in southern Africa
Cited by: 6
Author(s): Deon de Jager, Cindy Kim Harper, Paulette Bloomer
Software Mentions: 5
Published: about 4 years ago

10.7554/eLife.41853

Vocal and locomotor coordination develops in association with the autonomic nervous system
Cited by: 15
Author(s): Morgan L. Gustison, Jeremy I. Borjon, Daniel Yasumasa Takahashi, Asif A. Ghazanfar
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.45450

Positive and negative incentive contrasts lead to relative value perception in ants
Cited by: 21
Author(s): Stephanie Wendt, Kim Strunk, Jürgen Heınze, Andreas Roider, Tomer J. Czaczkes
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.08490

Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
Cited by: 363
Author(s): Simon Roux, Steven J. Hallam, Tanja Woyke, Matthew B. Sullivan
Software Mentions: 3
Published: over 9 years ago

10.3390/insects12020167

A Linkage-Based Genome Assembly for the Mosquito Aedes albopictus and Identification of Chromosomal Regions Affecting Diapause
Cited by: 29
Author(s): John H. Boyle, Pasi Rastas, Xin Huang, Austin G. Garner, Indra Vythilingam, Peter Armbruster
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0220275

Geographical origin determines responses to salinity of Mediterranean caddisflies
Cited by: 4
Author(s): Mauricio J. Carter, M. Flores, Rodrigo Ramos–Jiliberto
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0204432

Structural design of the echinoid’s trabecular system
Cited by: 15
Author(s): Tobias B. Grun, James H. Nebelsick
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0176384

No evidence for the radiation time lag model after whole genome duplications in Teleostei
Cited by: 11
Author(s): Sacha Laurent, Nicolas Salamin, Marc Robinson‐Rechavi
Software Mentions: 2
Published: over 7 years ago

10.1038/sdata.2015.50

The Centennial Trends Greater Horn of Africa precipitation dataset
Cited by: 88
Author(s): Chris Funk, Sharon E. Nicholson, M. F. Landsfeld, Douglas Klotter, Peter Y. Peterson, L. Harrison
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0151089

Cisplatin Resistant Spheroids Model Clinically Relevant Survival Mechanisms in Ovarian Tumors
Cited by: 36
Author(s): Winyoo Chowanadisai, Shanta M. Messerli, Daniel Miller, Jamie E. Medina, Joshua W. Hamilton, Mark A. Messerli, Alexander S. Brodsky
Software Mentions: 2
Published: over 8 years ago

10.1093/gbe/evz110

Recent Secondary Contacts, Linked Selection, and Variable Recombination Rates Shape Genomic Diversity in the Model Species Anolis carolinensis
Cited by: 24
Author(s): Yann Bourgeois, Robert P. Ruggiero, Joseph D. Manthey, Stéphane Boissinot
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pntd.0002456

Non-Invasive Sampling of Schistosomes from Humans Requires Correcting for Family Structure
Cited by: 17
Author(s): Michelle L. Steinauer, Mark R. Christie, Michael S. Blouin, Lelo E. Agola, Ibrahim N. Mwangi, Geoffrey Maina, Martin W. Mutuku, Joseph M. Kinuthia, Gerald M. Mkoji, Eric S. Loker
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0078680

Vitis Phylogenomics: Hybridization Intensities from a SNP Array Outperform Genotype Calls
Cited by: 47
Author(s): Allison J. Miller, Naim Matasci, Heidi Schwaninger, Mallikarjuna K. Aradhya, Bernard Prins, Gan-Yuan Zhong, Charles J. Simon, Edward S. Buckler, Sean Myles
Software Mentions: 1
Published: almost 11 years ago

10.3389/fmicb.2020.00500

Evasion of Plant Innate Defense Response by Salmonella on Lettuce
Cited by: 16
Author(s): Nicholas Johnson, Pushpinder Kaur Litt, Kalmia E. Kniel, Harsh P. Bais
Software Mentions: 1
Published: over 4 years ago

10.3389/fpls.2020.592881

Human-Mediated Land Use Change Drives Intraspecific Plant Trait Variation
Cited by: 4
Author(s): Hayley Schroeder, Heather Grab, André Kessler, Katja Poveda
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12983-019-0326-9

A nemertean excitatory peptide/CCHamide regulates ciliary swimming in the larvae of Lineus longissimus
Cited by: 8
Author(s): Daniel Thiel, Philipp Bauknecht, Gáspár Jékely, Andreas Hejnol
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/2947067

Association between Triglyceride-Glucose Index and Type 2 Diabetes Mellitus in the Japanese Population: A Secondary Analysis of a Retrospective Cohort Study
Cited by: 14
Author(s): En-Qian Liu, Yaping Weng, Aiming Zhou
Software Mentions: 1
Published: almost 4 years ago