Ecosyste.ms: Papers

10.1002/ece3.7625

Genetic differentiation and signatures of local adaptation revealed by RADseq for a highly dispersive mud crab <i>Scylla olivacea</i> (Herbst, 1796) in the Sulu Sea
Cited by: 4
Author(s): Michael John Mendiola, Rachel Ravago-Gotanco
Software Mentions: 12
Published: over 3 years ago

10.1371/journal.pcbi.1008991

Memes: A motif analysis environment in R using tools from the MEME Suite
Cited by: 22
Author(s): Spencer L. Nystrom, Daniel J. McKay
Software Mentions: 12
Published: about 3 years ago

10.1371/journal.pone.0241025

Genome-wide SNP analysis to assess the genetic population structure and diversity of Acrocomia species
Cited by: 13
Author(s): Brenda Gabriela Diaz, Maria Imaculada Zucchi, Alessandro Alves‐Pereira, Caléo Panhoca de Almeida, Aline Costa Lima Moraes, Suelen Alves Vianna, Joaquim Adelino de Azevedo-Filho, Carlos Augusto Colombo
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pone.0231744

Combining genetic and demographic monitoring better informs conservation of an endangered urban snake
Cited by: 11
Author(s): Dustin A. Wood, Jonathan P. Rose, Brian J. Halstead, Ricka E. Stoelting, Karen E. Swaim, Amy G. Vandergast
Software Mentions: 8
Published: over 4 years ago

10.1093/gigascience/gix129

Hybrid-denovo: a de novo OTU-picking pipeline integrating single-end and paired-end 16S sequence tags
Cited by: 15
Author(s): Xianfeng Chen, Stephen Johnson, Patricio Jeraldo, Junwen Wang, Nicholas Chia, Jean Pierre A. Kocher, Jun Chen
Software Mentions: 7
Published: almost 7 years ago

10.1016/j.heliyon.2021.e06160

Genomic evidence supports the introgression between two sympatric stickleback species inhabiting the White Sea basin
Cited by: 4
Author(s): Artem Nedoluzhko, Fedor Sharko, Svetlana Tsygankova, Eugenia Boulygina, Amina S. Ibragimova, Anton Teslyuk, Jorge Galindo-Villegas, С. М. Расторгуев
Software Mentions: 7
Published: almost 4 years ago

10.1186/s12864-021-07917-3

Facilitating population genomics of non-model organisms through optimized experimental design for reduced representation sequencing
Cited by: 6
Author(s): Henrik Christiansen, Franz M. Heindler, Bart Hellemans, Quentin Jossart, Francesca Pasotti, Henri Robert, Marie Verheye, Bruno Danis, Marc Kochzius, Frédérik Leliaert, Camille Moreau, Tasnim Patel, Anton P. Van de Putte, Ann Vanreusel, Filip Volckaert, Isa Schön
Software Mentions: 7
Published: over 3 years ago

10.1002/ece3.4905

Comparing RADseq and microsatellites for estimating genetic diversity and relatedness — Implications for brown trout conservation
Cited by: 111
Author(s): Alexandre Lemopoulos, Jenni M. Prokkola, Silva Uusi‐Heikkilä, Anti Vasemägi, Ari Huusko, Pekka Hyvärinen, Marja‐Liisa Koljonen, Jarmo Koskiniemi, Anssi Vainikka
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmicb.2021.665849

Decisive Effects of Life Stage on the Gut Microbiota Discrepancy Between Two Wild Populations of Hibernating Asiatic Toads (Bufo gargarizans)
Cited by: 3
Author(s): Xuehang Song, Jingwei Zhang, Jinghan Song, Yuanyuan Zhai
Software Mentions: 6
Published: over 3 years ago

10.1186/s12866-019-1540-5

Taxonomic features and comparisons of the gut microbiome from two edible fungus-farming termites (Macrotermes falciger; M. natalensis) harvested in the Vhembe district of Limpopo, South Africa
Cited by: 13
Author(s): Stephanie L. Schnorr, Courtney A. Hofman, Shandukani R. Netshifhefhe, Frances D. Duncan, Tanvi P. Honap, Julie J. Lesnik, Cecil M. Lewis
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.5793

Phylogeography and population genetics of pine butterflies: Sky islands increase genetic divergence
Cited by: 12
Author(s): Dale A. Halbritter, Caroline Storer, Akito Y. Kawahara, Jaret C. Daniels
Software Mentions: 6
Published: about 5 years ago

10.1111/mec.13550

Bs<scp>RAD</scp>seq: screening <scp>DNA</scp> methylation in natural populations of non‐model species
Cited by: 95
Author(s): Emiliano Trucchi, Anna B. Mazzarella, Gregor D. Gilfillan, María Teresa Cáceres Lorenzo, Peter Schönswetter, Ovidiu Paun
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0243446

Genomic and morphological evidence of distinct populations in the endemic common (weedy) seadragon Phyllopteryx taeniolatus (Syngnathidae) along the east coast of Australia
Cited by: 9
Author(s): O. Selma Klanten, Michelle R. Gaither, Samuel E. Greaves, Kade Mills, Kristine O’Keeffe, John Turnbull, Rob McKinnon, David J. Booth
Software Mentions: 5
Published: almost 4 years ago

10.3390/ani11082226

In Search of Species-Specific SNPs in a Non-Model Animal (European Bison (Bison bonasus))—Comparison of De Novo and Reference-Based Integrated Pipeline of STACKS Using Genotyping-by-Sequencing (GBS) Data
Cited by: 1
Author(s): Sazia Kunvar, Sylwia D. Czarnomska, Cino Pertoldi, Małgorzata Tokarska
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-021-82136-0

A high-throughput RNA-Seq approach to elucidate the transcriptional response of Piriformospora indica to high salt stress
Cited by: 13
Author(s): Nivedita, Abdul Rawoof, Nirala Ramchiary, M. Z. Abdin
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12866-019-1519-2

Assessment of the impact of different fecal storage protocols on the microbiota diversity and composition: a pilot study
Cited by: 16
Author(s): Shirin Moossavi, Phillip A. Engen, Reza Ghanbari, Stefan J. Green, Ankur Naqib, Faraz Bishehsari, Shahin Merat, Hossein Poustchi, Ali Keshavarzian, Reza Malekzadeh
Software Mentions: 4
Published: over 5 years ago

10.1038/srep34055

Dysbiosis of small intestinal microbiota in liver cirrhosis and its association with etiology
Cited by: 142
Author(s): Yanfei Chen, Feng Ji, Jing Guo, Ding Shi, Daiqiong Fang, Lanjuan Li
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0200607

In Silico evaluation and identification of fungi capable of producing endo-inulinase enzyme
Cited by: 9
Author(s): Jayaram Chikkerur, A.K. Samanta, A. Dhali, Atul P. Kolte, Sohini Roy, M. Pratheepa
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-018-0518-0

Bacterial microbiota protect an invasive bark beetle from a pine defensive compound
Cited by: 47
Author(s): Chihang Cheng, Jacob D. Wickham, Li Chen, Dandan Xu, Min Lü, Jianghua Sun
Software Mentions: 4
Published: over 6 years ago

10.1002/ece3.4814

Metabarcoding free‐living marine nematodes using curated 18S and CO1 reference sequence databases for species‐level taxonomic assignments
Cited by: 62
Author(s): Lara Macheriotou, Katja Guilini, Tânia Campinas Bezerra, Bjorn Tytgat, Dinh Tu Nguyen, Thi Van Nguyen, Febe Noppe, Maickel Armenteros, Fehmi Boufahja, Annelien Rigaux, Ann Vanreusel, Sofie Derycke
Software Mentions: 4
Published: almost 6 years ago

10.1111/eva.12274

Morphological and genomic comparisons of<scp>H</scp>awaiian and<scp>J</scp>apanese<scp>B</scp>lack‐footed<scp>A</scp>lbatrosses (<i><scp>P</scp>hoebastria nigripes</i>) using double digest<scp>RAD</scp>seq: implications for conservation
Cited by: 39
Author(s): Elisa G. Dierickx, Allison J. Shultz, Fumio Sato, Takashi Hiraoka, Scott V. Edwards
Software Mentions: 4
Published: over 9 years ago

10.1002/ece3.7322

Local environment‐driven adaptive evolution in a marine invasive ascidian (<i>Molgula manhattensis</i>)
Cited by: 10
Author(s): Yiyong Chen, Yangchun Gao, Xuena Huang, Shiguo Li, Aibin Zhan
Software Mentions: 4
Published: over 3 years ago

10.1186/s12915-015-0119-3

Distinct genetic architecture underlies the emergence of sleep loss and prey-seeking behavior in the Mexican cavefish
Cited by: 87
Author(s): Masato Yoshizawa, Beatriz G. Robinson, Erik R. Duboué, Pavel Mašek, James B. Jaggard, Kelly E. O’Quin, Richard Borowsky, William R. Jeffery, Alex C. Keene
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12864-018-5156-1

A fast detection of fusion genes from paired-end RNA-seq data
Cited by: 19
Author(s): Trung Nghia Vu, Wenjiang Deng, Quang Thinh Trac, Stefano Calza, Woochang Hwang, Yudi Pawitan
Software Mentions: 3
Published: about 6 years ago

10.1111/eva.12837

A genome‐wide investigation of the worldwide invader <i>Sargassum muticum</i> shows high success albeit (almost) no genetic diversity
Cited by: 31
Author(s): Sabrina Le Cam, Claire Daguin‐Thiébaut, Sarah Bouchemousse, Aschwin H. Engelen, Nova Mieszkowska, Frédérique Viard
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2018.03283

Seaweed Loads Cause Stronger Bacterial Community Shifts in Coastal Lagoon Sediments Than Nutrient Loads
Cited by: 21
Author(s): Tânia Aires, Gerard Muyzer, Ester A. Serrão, Aschwin H. Engelen
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpls.2021.683043

Evidence for Glacial Refugia of the Forest Understorey Species Helleborus niger (Ranunculaceae) in the Southern as Well as in the Northern Limestone Alps
Cited by: 7
Author(s): Eliška Záveská, Philipp Kirschner, Božo Frajman, Johannes Wessely, Wolfgang Willner, Andreas Gattringer, Karl Hülber, Desanka Lazić, Christoph Dobeš
Software Mentions: 3
Published: over 3 years ago

10.14814/phy2.14261

A decreased abundance of clostridia characterizes the gut microbiota in eosinophilic esophagitis
Cited by: 25
Author(s): Purna C. Kashyap, Stephen Johnson, Debra M. Geno, Heather Lekatz, Crystal Lavey, Jeffrey A. Alexander, Jun Chen, David A. Katzka
Software Mentions: 3
Published: about 5 years ago

10.1186/s12859-020-03614-2

Extending rnaSPAdes functionality for hybrid transcriptome assembly
Cited by: 13
Author(s): Andrey D. Prjibelski, G. Puglia, Dmitry Antipov, Elena Bushmanova, Daniela Giordano, Alla Mikheenko, Domenico Vitale, Alla Lapidus
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-017-02314-x

Secondary metabolite genes encoded by potato rhizosphere microbiomes in the Andean highlands are diverse and vary with sampling site and vegetation stage
Cited by: 19
Author(s): Gajender Aleti, Biljana Nikolić, Günter Brader, Ram Vinay Pandey, Livio Antonielli, Stefan Pfeiffer, Andreas Oswald, Angela Sessitsch
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-017-14998-2

MiSNPDb: a web-based genomic resources of tropical ecology fruit mango (Mangifera indica L.) for phylogeography and varietal differentiation
Cited by: 19
Author(s): Mir Asif Iquebal, Sarika Jaiswal, Ajay Kumar Mahato, Pawan Kumar Jayaswal, U. B. Angadi, Neeraj Kumar, Nimisha Sharma, Anand Kumar Singh, Manish Srivastav, Jai Prakash, Sanjay Kumar Singh, Kasim Khan, Rupesh Kumar Mishra, Shailendra Rajan, Anju Bajpai, B. Sandhya, P. Nischita, K. V. Ravishankar, M. R. Dinesh, Anil Rai, Dinesh Kumar, Tilak Raj Sharma, Nagendra Singh
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-021-89798-w

Genomic selection signatures in autism spectrum disorder identifies cognitive genomic tradeoff and its relevance in paradoxical phenotypes of deficits versus potentialities
Cited by: 3
Author(s): Anil Prakash, Moinak Banerjee
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0020450

Modeling Symmetric Macromolecular Structures in Rosetta3
Cited by: 191
Author(s): Frank DiMaio, Andrew Leaver‐Fay, Philip Bradley, David Baker, Ingemar André
Software Mentions: 3
Published: over 13 years ago

10.1186/s12864-017-4075-x

Analysis of the genome sequence of Phomopsis longicolla: a fungal pathogen causing Phomopsis seed decay in soybean
Cited by: 21
Author(s): Shuxian Li, Omar Darwish, Nadim W. Alkharouf, Bryan Musungu, Benjamin F. Matthews
Software Mentions: 3
Published: about 7 years ago

10.1186/s12864-019-5474-y

Microbiota in the apical root canal system of tooth with apical periodontitis
Cited by: 33
Author(s): Wenhao Qian, Ting Ma, Mao Ye, Zhiyao Li, Yuanhua Liu, Hao Pei
Software Mentions: 3
Published: over 5 years ago

10.1186/s13104-016-2069-4

Genotyping-by-sequencing in an orphan plant species Physocarpus opulifolius helps identify the evolutionary origins of the genus Prunus
Cited by: 4
Author(s): Matteo Buti, Daniel J. Sargent, Khethani Mhelembe, Pietro Delfino, K. R. Tobutt, Riccardo Velasco
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0138006

Semantic Assembly and Annotation of Draft RNAseq Transcripts without a Reference Genome
Cited by: 4
Author(s): Andrey A. Ptitsyn, Ramzi Temanni, Christelle Bouchard, Peter Anderson
Software Mentions: 2
Published: about 9 years ago

10.1093/sysbio/syaa101

Integrating Sequence Capture and Restriction Site-Associated DNA Sequencing to Resolve Recent Radiations of Pelagic Seabirds
Cited by: 11
Author(s): Joan Ferrer Obiol, Helen F. James, R. Terry Chesser, Vincent Bretagnolle, Jacob González‐Solís, Julio Rozas, Marta Riutort, Andreanna J. Welch
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0197364

Discovery of SNPs for individual identification by reduced representation sequencing of moose (Alces alces)
Cited by: 14
Author(s): Ida-Maria Blåhed, Helena Königsson, Göran Ericsson, Göran Spong
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pgen.1008013

Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation
Cited by: 101
Author(s): Qiaowei Pan, Romain Féron, Ayaka Yano, René Guyomard, Elodie Jouanno, Estelle Vigouroux, Ming Wen, Jean-Mickaël Busnel, Julien Bobe, Jean-Paul Concordet, Hugues Parrinello, Laurent Journot, Christophe Klopp, Jérôme Lluch, Céline Roques, John H. Postlethwait, Manfred Schartl, Amaury Herpin, Yann Guiguen
Software Mentions: 2
Published: over 5 years ago

10.1098/rsos.160548

RAD sequencing resolves fine-scale population structure in a benthic invertebrate: implications for understanding phenotypic plasticity
Cited by: 71
Author(s): David L. J. Vendrami, Luca Telesca, Hannah Weigand, Martina Weiss, Katie D. Fawcett, Lehman Katrin, Melody S. Clark, Florian Leese, McMinn Carrie, H. M. Moore, Joseph I. Hoffman
Software Mentions: 2
Published: almost 8 years ago

10.1186/s12915-021-01078-1

Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri
Cited by: 16
Author(s): Emily K. Herman, Alex Greninger, Mark van der Giezen, Michael L. Ginger, Inmaculada Ramírez-Macías, Haylea C. Miller, Matthew J. Morgan, Anastasios D. Tsaousis, Katrina B. Velle, Romana Vargová, Kristína Záhonová, Sebastián R. Najle, Georgina Macintyre, Norbert Müller, Mattias Wittwer, Denise C. Zysset-Burri, Marek Eliáš, Claudio H. Slamovits, Matthew T. Weirauch, Lillian K. Fritz‐Laylin, Francine Marciano‐Cabral, Geoffrey J. Puzon, Tom Walsh, Charles Y. Chiu, Joel B. Dacks
Software Mentions: 2
Published: over 3 years ago

10.1089/cmb.2018.0253

Mendelian Inconsistent Signatures from 1314 Ancestrally Diverse Family Trios Distinguish Biological Variation from Sequencing Error
Cited by: 6
Author(s): Prachi Kothiyal, Wendy S. W. Wong, Dale L. Bodian, John E. Niederhuber
Software Mentions: 2
Published: over 5 years ago

10.1002/ece3.4965

Draft genome of the river water buffalo
Cited by: 34
Author(s): Abdul Awal Mintoo, Hailin Zhang, Chunhai Chen, Mohammad Moniruzzaman, Tingxian Deng, Mahbub Anam, Q. M. E. Huque, Xuanmin Guang, Ping Wang, Zhisheng Zhong, Pengfei Han, Asma Khatun, Tabith M. Awal, Qiang Gao, Xianwei Liang
Software Mentions: 2
Published: almost 6 years ago

10.7717/peerj.4377

Acidification increases abundances of<i>Vibrionales</i>and<i>Planctomycetia</i>associated to a seaweed-grazer system: potential consequences for disease and prey digestion efficiency
Cited by: 16
Author(s): Tânia Aires, Alexandra Serebryakova, Frédérique Viard, Ester Á. Serrão, Aschwin H. Engelen
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.8139

Genetic structure of Australian glass shrimp,<i>Paratya australiensis,</i>in relation to altitude
Cited by: 2
Author(s): Sharmeen Rahman, Daniel J. Schmidt, Jane Hughes
Software Mentions: 2
Published: almost 5 years ago

10.1002/ece3.3023

Historical demography and genetic differentiation of the giant freshwater prawn<i>Macrobrachium rosenbergii</i>in Bangladesh based on mitochondrial and ddRAD sequence variation
Cited by: 6
Author(s): M. M. Mahbub Alam, Kristen M. Westfall, Snæbjörn Pálsson
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2014.00703

High temporal and spatial diversity in marine RNA viruses implies that they have an important role in mortality and structuring plankton communities
Cited by: 34
Author(s): Julia Gustavsen, Danielle M. Winget, Xi Tian, Curtis A. Suttle
Software Mentions: 2
Published: almost 10 years ago

10.1186/s12864-015-1878-5

Application of whole genome re-sequencing data in the development of diagnostic DNA markers tightly linked to a disease-resistance locus for marker-assisted selection in lupin (Lupinus angustifolius)
Cited by: 34
Author(s): Huaan Yang, Jianbo Jian, Xuan Li, Daniel Renshaw, Jon C. Clements, Mark Sweetingham, Cong Tan, Chengdao Li
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0165374

Antennal Transcriptome and Differential Expression Analysis of Five Chemosensory Gene Families from the Asian Honeybee Apis cerana cerana
Cited by: 19
Author(s): Huiting Zhao, Yali Du, Pengfei Gao, Shujie Wang, Pan JianFang, Yusuo Jiang
Software Mentions: 2
Published: about 8 years ago

10.1186/s42522-020-00016-5

Evaluation of WGS-subtyping methods for epidemiological surveillance of foodborne salmonellosis
Cited by: 12
Author(s): Manal Mohammed, Salina Thapa
Software Mentions: 1
Published: over 4 years ago

10.1186/s12859-020-03720-1

ADEPT: a domain independent sequence alignment strategy for gpu architectures
Cited by: 14
Author(s): Muaaz Gul Awan, Jack Deslippe, Aydın Buluç, Oğuz Selvitopi, Steven Hofmeyr, Leonid Oliker, Katherine Yelick
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2148-12-251

Evolution of cichlid vision via trans-regulatory divergence
Cited by: 32
Author(s): Kelly E. O’Quin, Jane E. Schulte, Zeenal H. Patel, Nadia Kahn, Zan Naseer, Helena Wang, Matthew A. Conte, Karen L. Carleton
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-13-201

Development of simple sequence repeat (SSR) markers from a genome survey of Chinese bayberry (Myrica rubra)
Cited by: 103
Author(s): Yun Jiao, Hao Jia, Xiongwei Li, Mingliang Chai, Huijuan Jia, Zhe Chen, Guo-Yun Wang, Chun-yan Chai, Eric van de Weg, Zhongshan Gao
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-016-2781-4

Construction of a high-density, high-quality genetic map of cultivated lotus (Nelumbo nucifera) using next-generation sequencing
Cited by: 22
Author(s): Zhengwei Liu, Haishan Zhu, Yuping Liu, Jing Kuang, Kai Zhou, Fan Liang, Zhenhua Liu, Depeng Wang, Weidong Ke
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-017-3634-5

Allelic incompatibility can explain female biased sex ratios in dioecious plants
Cited by: 25
Author(s): Pascal Pucholt, Henrik R. Hallingbäck, Sofia Berlin
Software Mentions: 1
Published: over 7 years ago

10.1155/2020/3536761

Characteristic and Phylogenetic Analysis of the Complete Chloroplast Genomes of Three Medicinal Plants of Schisandraceae
Cited by: 1
Author(s): Dachuan Zhang, Jiahao Wang, Liang Xu, Yanping Xing, Tingting Zhang, Shengnan Li, Yongqiang Yang, Guihua Bao, Wuliji Ao, Ting-Guo Kang
Software Mentions: 1
Published: about 4 years ago

10.1080/23802359.2021.1930598

The complete chloroplast genome of <i>Tetrastigma planicaule</i>, one important folk medicinal plant in China
Cited by: 1
Author(s): Xin Huang, Qing Zhou, Cimei Qin, Chun Xiang Mao, Kaidao Sun, Bo Qin, Qing Tang
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1003010

Combinatorial Pooling Enables Selective Sequencing of the Barley Gene Space
Cited by: 23
Author(s): Stefano Lonardi, Denisa Duma, Matthew Alpert, Francesca Cordero, Marco Beccuti, Prasanna R. Bhat, Yan-Ling Wu, Gianfranco Ciardo, Burair Alsaihati, Yaqin Ma, Steve Wanamaker, Josh Resnik, Serdar Bozdag, Ming Luo, Timothy J. Close
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0060557

Genomic Sequence and Virulence of Clonal Isolates of Vaccinia Virus Tiantan, the Chinese Smallpox Vaccine Strain
Cited by: 19
Author(s): Qicheng Zhang, Mingxing Tian, Yi Feng, Kai Zhao, Jing Xu, Ying Liu, Yiming Shao
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0177642

Characterization of the juvenile green turtle (Chelonia mydas) microbiome throughout an ontogenetic shift from pelagic to neritic habitats
Cited by: 55
Author(s): James Price, Frank V. Paladino, Margaret M. Lamont, Blair E. Witherington, Scott T. Bates, Tanya Soule
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0201254

A RAD-sequencing approach to genome-wide marker discovery, genotyping, and phylogenetic inference in a diverse radiation of primates
Cited by: 20
Author(s): Lina M. Valencia, Amely Branquinho Martins, Edgardo M. Ortiz, Anthony Di Fiore
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0021252

Pyrosequencing for Mini-Barcoding of Fresh and Old Museum Specimens
Cited by: 68
Author(s): Shadi Shokralla, Xin Zhou, Daniel H. Janzen, Winnie Hallwachs, Jean-François Landry, Luke M. Jacobus, Mehrdad Hajibabaei
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0246690

Shedding and transmission of a live attenuated influenza A virus vaccine in pre-weaned pigs under field conditions
Cited by: 2
Author(s): Gustavo Lopez Moreno, Jayaveeramuthu Nirmala, Christa Goodell, Marie Culhane, Montserrat Torremorell
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13065-018-0482-6

Fabrication of 6-gingerol, doxorubicin and alginate hydroxyapatite into a bio-compatible formulation: enhanced anti-proliferative effect on breast and liver cancer cells
Cited by: 27
Author(s): Danushika C. Manatunga, Rohini M. de Silva, K.M. Nalin de Silva, Dulharie T. Wijeratne, Gathsaurie Neelika Malavige, Gareth R. Williams
Software Mentions: 1
Published: almost 6 years ago

10.1016/j.dib.2017.12.054

Data on genome sequencing, analysis and annotation of a pathogenic Bacillus cereus 062011msu
Cited by: 6
Author(s): Rashmi Rathy, Sayan Paul, Vasanthakumar Ponesakki, Kanniah Paulkumar, Suriya Prabha Muthu, Arun Arumugaperumal, Emmanuel Joshua Jebasingh Sathiya Balasingh Thangapandi, Suresh Balakrishnan, Jeyaprakash Rajendhran, Sudhakar Sivasubramaniam
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.8050

Gudgeon fish with and without genetically determined countershading coexist in heterogeneous littoral environments of an ancient lake
Cited by: 3
Author(s): Tomoyuki Kokita, Kohtaro Ueno, Yo Y. Yamasaki, Masanari Matsuda, Ryoichi Tabata, Atsushi J. Nagano, Tomobumi Mishina, Katsutoshi Watanabe
Software Mentions: 1
Published: about 3 years ago

10.1002/ece3.2638

Ecological speciation by temporal isolation in a population of the stonefly<i>Leuctra hippopus</i>(Plecoptera, Leuctridae)
Cited by: 21
Author(s): Louis Boumans, Silje Hogner, John E. Brittain, Arild Johnsen
Software Mentions: 1
Published: almost 8 years ago

10.1002/ece3.6602

Identification of candidate loci for adaptive phenotypic plasticity in natural populations of spadefoot toads
Cited by: 5
Author(s): Nicholas A. Levis, Emily M X Reed, David W. Pfennig, Martha O. Burford Reiskind
Software Mentions: 1
Published: over 4 years ago

10.1111/1462-2920.14533

Endemic and cosmopolitan fungal taxa exhibit differential abundances in total and active communities of Antarctic soils
Cited by: 24
Author(s): Filipa Cox, Kevin K. Newsham, Clare H. Robinson
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2019.01206

The Reversal of Immune Exclusion Mediated by Tadalafil and an Anti-tumor Vaccine Also Induces PDL1 Upregulation in Recurrent Head and Neck Squamous Cell Carcinoma: Interim Analysis of a Phase I Clinical Trial
Cited by: 35
Author(s): Donald T. Weed, Serena Zilio, Isildinha M. Reis, Zoukaa Sargi, Marianne Abouyared, Carmen Gomez-Fernández, Francisco Civantos, Carla Rodriguez, Paolo Serafini
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2015.00416

SarA based novel therapeutic candidate against Staphylococcus aureus associated with vascular graft infections
Cited by: 46
Author(s): Rekha Arya, Raju Ravikumar, Ramachandran Sarojini Santhosh, S. Adline Princy
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2020.01104

Characterization of B-Genome Specific High Copy hAT MITE Families in Brassica nigra Genome
Cited by: 1
Author(s): Sampath Perumal, Brian James, Lily Tang, Sateesh Kagale, Stephen J. Robinson, Tae-Jin Yang, Isobel A. P. Parkin
Software Mentions: 1
Published: over 4 years ago

10.1590/1678-4685-GMB-2015-0186

Comparative genomics of an endophytic Pseudomonas putida isolated from mango orchard
Cited by: 7
Author(s): Huma Asif, David J. Studholme, Asifullah Khan, Muhammad Aurongzeb, Iltaf Khan, M. Kamran Azim
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1006218

Immune-driven alterations in mucin sulphation is an important mediator of Trichuris muris helminth expulsion
Cited by: 34
Author(s): Sumaira Z. Hasnain, Paul A. Dawson, Rohan Lourie, Peter Hutson, Hui Tong, Richard K. Grencis, Michael A. McGuckin, David J. Thornton
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep35246

Nitric oxide participates in plant flowering repression by ascorbate
Cited by: 19
Author(s): Rajendran Senthil Kumar, Chih-Ya Shen, Peiyin Wu, Suresh Kumar, Moda Sang Hua, Kai‐Wun Yeh
Software Mentions: 1
Published: about 8 years ago

10.1038/srep42990

TWIST1 induces MMP3 expression through up-regulating DNA hydroxymethylation and promotes catabolic responses in human chondrocytes
Cited by: 15
Author(s): Joe Hasei, Takeshi Teramura, Toshiyuki Takehara, Yuta Onodera, Takuro Horii, Merissa Olmer, Izuho Hatada, Kanji Fukuda, Toshifumi Ozaki, Martin Lotz, Hiroshi Asahara
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-25877-9

Discrete taxa of saprotrophic fungi respire different ages of carbon from Antarctic soils
Cited by: 24
Author(s): Kevin K. Newsham, Mark H. Garnett, Clare H. Robinson, Filipa Cox
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-85591-x

Genomic signatures of drift and selection driven by predation and human pressure in an insular lizard
Cited by: 5
Author(s): Marta Bassitta, Richard P. Brown, Ana Pérez‐Cembranos, Valentı́n Pérez-Mellado, José A. Castro, A. Picornell, Cori Ramón
Software Mentions: 1
Published: over 3 years ago

10.3390/jof7090707

Complete Genomic Characterization and Identification of Saccharomycopsisphalluae sp. nov., a Novel Pathogen Causes Yellow Rot Disease on Phallus rubrovolvatus
Cited by: 7
Author(s): Xiaoxiao Yuan, Keqin Peng, Changtian Li, Zhibo Zhang, Xiang‐Yu Zeng, Fenghua Tian, Yu Li
Software Mentions: 1
Published: about 3 years ago

10.1080/20002297.2017.1325195

The metatranscriptomes of root caries and sound root surface biofilms
Cited by: 0
Author(s): Thuy Do, Nailê Damé‐Teixeira, Clarissa Cavalcanti Fatturi Parolo, Marisa Maltz, Aradhna Tugnait, Deirdre DeVine
Software Mentions: 1
Published: over 7 years ago

10.1186/s13568-018-0680-6

Metagenome sequencing to analyze the impacts of thiamine supplementation on ruminal fungi in dairy cows fed high-concentrate diets
Cited by: 15
Author(s): Fuguang Xue, Xuemei Nan, Fuyu Sun, Xiaohua Pan, Yuming Guo, Linshu Jiang, Benhai Xiong
Software Mentions: 1
Published: about 6 years ago