pypi: cutadapt | Projects | Ecosyste.ms: Papers

10.1186/s10020-020-00202-1

The MC4R SNPs, their haplotypes and gene-environment interactions on the risk of obesity
Cited by: 10
Author(s): Bi-Liu Wei, Rui-Xing Yin, Chunxiao Liu, Guo-Xiong Deng, Yao-Zong Guan, Peng-Fei Zheng
Software Mentions: 1
Published: about 6 years ago

10.1002/mgg3.1741

Pathogenic gene variation spectrum and carrier screening for Wilson’s disease in Qingdao area
Cited by: 2
Author(s): Lingyan Qiao, Juan Ge, Li Cheng, Yusheng Liu, Conghui Hu, Sicui Hu, Wenjie Li, Tang Li
Software Mentions: 1
Published: over 5 years ago

10.1002/mgg3.591

A novel fusion gene involving PDGFRB and GCC2 in a chronic eosinophilic leukemia patient harboring t(2;5)(q37;q31)
Cited by: 2
Author(s): Noriyoshi Iriyama, Hiroyuki Takahashi, Hiroya Naruse, Katsuhiro Miura, Yuichi Uchino, Masaru Nakagawa, Kazuhide Iizuka, Takashi Hamada, Yoshihiro Hatta, Tomohiro Nakayama, Masami Takei
Software Mentions: 1
Published: over 7 years ago

10.1186/s12859-016-1108-4

tarSVM: Improving the accuracy of variant calls derived from microfluidic PCR-based targeted next generation sequencing using a support vector machine
Cited by: 1
Author(s): Christopher E. Gillies, Edgar A. Otto, Virginia Vega-Warner, Catherine Robertson, Simone Sanna‐Cherchi, Ali G. Gharavi, Brandon L. Crawford, Rajendra Bhimma, Cheryl A. Winkler, Hyun Min Kang, Matthew G. Sampson
Software Mentions: 1
Published: over 10 years ago

10.1111/1755-0998.12551

Combined hybridization capture and shotgun sequencing for ancient DNA analysis of extinct wild and domestic dromedary camel
Cited by: 22
Author(s): Elmira Mohandesan, Camilla Speller, Joris Peters, Hans‐Peter Uerpmann, Margarethe Uerpmann, Bea De Cupere, Michael Hofreiter, Pamela A. Burger
Software Mentions: 1
Published: about 10 years ago

10.1111/1755-0998.12682

Effective mosquito and arbovirus surveillance using metabarcoding
Cited by: 49
Author(s): Jana Batovska, SE Lynch, Noel O. I. Cogan, Karen Brown, JM Darbro, Ea Kho, Mark J. Blacket
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.43022

Random-sequence genetic oligomer pools display an innate potential for ligation and recombination
Cited by: 39
Author(s): Hannes Mutschler, Alexander I. Taylor, Benjamin T. Porebski, Alice Lightowlers, Gillian Houlihan, Mikhail Abramov, Piet Herdewijn, Philipp Holliger
Software Mentions: 1
Published: almost 8 years ago

10.1111/mec.12869

Assessing <scp>S</scp> ymbiodinium diversity in scleractinian corals via next‐generation sequencing‐based genotyping of the ITS2 <scp>rDNA</scp> region
Cited by: 183
Author(s): Chatchanit Arif, Camille Daniels, Till Bayer, Eulalia Banguera-Hinestroza, Adrian C. Barbrook, Christopher J. Howe, Todd C. LaJeunesse, Christian R. Voolstra
Software Mentions: 1
Published: about 12 years ago

10.1016/j.molcel.2019.02.027

A Role for Chromatin Remodeling in Cohesin Loading onto Chromosomes
Cited by: 58
Author(s): Sofía Muñoz, Masashi Minamino, Corella S. Casas-Delucchi, Harshil Patel, Frank Uhlmann
Software Mentions: 1
Published: over 7 years ago

10.1186/s13041-017-0286-y

Proteasome impairment in neural cells derived from HMSN-P patient iPSCs
Cited by: 15
Author(s): Naotoshi Murakami, Keiko Imamura, Yuishin Izumi, Naohiro Egawa, Kayoko Tsukita, Takako Enami, Takuya Yamamoto, Toshitaka Kawarai, Ryuji Kaji, Haruhisa Inoue
Software Mentions: 1
Published: over 9 years ago

10.1093/molbev/msy181

The Origin of a New Sex Chromosome by Introgression between Two Stickleback Fishes
Cited by: 46
Author(s): Groves Dixon, Jun Kitano, Mark Kirkpatrick
Software Mentions: 1
Published: about 8 years ago

10.1093/molbev/msw254

Complex Admixture Preceded and Followed the Extinction of Wisent in the Wild
Cited by: 14
Author(s): Karolina Węcek, Stefanie Hartmann, Johanna L. A. Paijmans, Ulrike H. Taron, Georgios Xenikoudakis, James A. Cahill, Peter D. Heintzman, Beth Shapiro, Gennady Baryshnikov, Aleksei N. Bunevich, Jennifer J. Crees, Roland Dobosz, Ninna Manaserian, Henryk Okarma, Małgorzata Tokarska, Samuel T. Turvey, Jan M. Wójcik, Waldemar Zyla, Jacek M. Szymura, Michael Hofreiter, Axel Barlow
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.63444

Development of antibody-dependent cell cytotoxicity function in HIV-1 antibodies
Cited by: 3
Author(s): Laura Doepker, Sonja Danon, Elias Harkins, D. Ralph, Zak A. Yaffe, Meghan Garrett, Amrit Dhar, Cassia Wagner, Megan Stumpf, Dana Arenz, James A. Williams, Walter Jaoko, Kishor Mandaliya, Kelly K. Lee, F. A. Matsen, Julie Overbaugh
Software Mentions: 1
Published: over 5 years ago

10.1186/s13100-017-0092-1

Targeted identification of TE insertions in a Drosophila genome through hemi-specific PCR
Cited by: 7
Author(s): Shuo Zhang, Erin S. Kelleher
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.16072

CELF RNA binding proteins promote axon regeneration in C. elegans and mammals through alternative splicing of Syntaxins
Cited by: 28
Author(s): Lizhen Chen, Zhijie Liu, Bing Zhou, Chaoliang Wei, Yu Zhou, Michael G. Rosenfeld, Xiang Dong Fu, Andrew Chisholm, Yishi Jin
Software Mentions: 1
Published: over 10 years ago

10.1080/23802359.2016.1219633

The complete mitochondrial genome of Histiostoma blomquisti (Acari: Histiostomatidae)
Cited by: 11
Author(s): Chih-Chi Lee, John Wang
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2105-15-329

trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags
Cited by: 2
Author(s): Gabriel Renaud, Matthew C. LaFave, Lina Jin, Tyra G. Wolfsberg, Shawn M. Burgess
Software Mentions: 1
Published: almost 12 years ago

10.18632/aging.102657

Low-abundance mutations in colorectal cancer patients and healthy adults
Cited by: 1
Author(s): Yanfei Li, Zhengsheng Dai, Gang Huang, Yueling Jin, Zhongping Ning, Junwei Shen
Software Mentions: 1
Published: over 6 years ago

10.1080/23802359.2016.1186520

Complete mitochondrial genomes of the Laotian Rock Rat (Laonastes aenigmamus) confirm deep divergence within the species
Cited by: 0
Author(s): Minh Đức Lê, Fernando Peñaloza, Raquel A. Martins, Thanh Van Nguyen, Ha L. Nguyen, Dang Xuan Nguyen, Luong D. Nguyen, Andreas Wilting
Software Mentions: 1
Published: almost 11 years ago

10.1080/23802359.2020.1731354

Characterization of the complete mitochondrial genome of the maize weevil, Sitophilus zeamais (Insecta: Coleoptera: Curculionidae) from Guizhou province
Cited by: 1
Author(s): Xin Zhou
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms9081672

Culture-Free Detection of Antibiotic Resistance Markers from Native Patient Samples by Hybridization Capture Sequencing
Cited by: 3
Author(s): Inês M. Ferreira, Sarah Lepuschitz, Stephan Beisken, Giuseppe Fiume, Katharina Mrazek, Bernhard J. H. Frank, Silke Huber, Miriam A. Knoll, Arndt von Haeseler, Arne Materna, Jochen G. Hofstaetter, Andreas E. Posch, Johannes Weinberger
Software Mentions: 1
Published: about 5 years ago

10.1128/MRA.00128-20

Draft Genome Sequence of the Astaxanthin-Producing Microalga Haematococcus lacustris Strain NIES-144
Cited by: 7
Author(s): Daichi Morimoto, Takashi Yoshida, Shigeki Sawayama
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.24138

Analysis of a gene panel for targeted sequencing of colorectal cancer samples
Cited by: 8
Author(s): Klaus H. Jensen, José M. G. Izarzugaza, Agnieszka Sierakowska Juncker, Rasmus Borup Hansen, Torben Frøstrup Hansen, Pascal Timshel, Thórarinn Blöndal, Thomas Skøt Jensen, Eske Rygaard-Hjalsted, Peter Marynen, Michael Thorsen, Rasmus Wernersson, Henrik Bjørn Nielsen, Anders Jakobsen, Søren Brunak, Flemming Brandt Sørensen
Software Mentions: 1
Published: over 8 years ago

10.1128/MRA.00326-20

Thaumarchaea Genome Sequences from a High Arctic Active Layer
Cited by: 1
Author(s): Emily Wei-Hsin Sun, Sassan Hajirezaie, Mackenzie Dooner, Tatiana A. Vishnivetskaya, Alice C. Layton, Archana Chauhan, Susan M. Pfiffner, Lyle G. Whyte, Tullis C. Onstott, Maggie C. Y. Lau
Software Mentions: 1
Published: over 6 years ago

10.1128/MRA.01456-18

Draft Genome Sequence of Streptomyces sp. Strain NL15-2K, a Degrader of Lignin-Derived Aromatic Compounds, Isolated from Forest Soil
Cited by: 0
Author(s): Motohiro Nishimura, Susumu Kawakami, Hideaki Otsuka
Software Mentions: 1
Published: over 7 years ago

10.1128/MRA.00165-21

Complete Genome Sequence of Staphylococcus epidermidis PH1-28, Isolated from the Forehead of a Hyperseborrheic Donor
Cited by: 1
Author(s): Pascal Hilaire, Leslie Landemaine, Sandy Contreras, Hélène Blanquart-Goudezeune, Patricia Siguier, François Cornet, Hélène Chiapello, Valentin Loux, Cécile Clavaud, Stanislas Morand
Software Mentions: 1
Published: over 5 years ago

10.1128/MRA.00641-21

Complete Genome Sequence of Lactobacillus helveticus JCM 1004, an Aminopeptidase-Producing Lactic Acid Bacterium
Cited by: 1
Author(s): Kana Morinaga, Hiroyuki Kusada, Miho Watanabe, Hideyuki Tamaki
Software Mentions: 1
Published: about 5 years ago

10.1099/mgen.0.000289

Genetic affinities of an eradicated European Plasmodium falciparum strain
Cited by: 7
Author(s): Toni de-Dios, Lucy van Dorp, Pere Gelabert, Christian Carøe, Marcela Sandoval-Velasco, Rosa Fregel, Raúl Escosa, Carles Aranda, Silvie Huijben, François Balloux, M. Thomas P. Gilbert, Carles Lalueza-Fox
Software Mentions: 1
Published: about 7 years ago

10.1264/jsme2.ME17188

Ureolytic Prokaryotes in Soil: Community Abundance and Diversity
Cited by: 17
Author(s): Mamoru Oshiki, Mitsuru Araki, Yuga Hirakata, Masashi Hatamoto, Takashi Yamaguchi, Nobuo Araki
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.68110

Functional development of a V3/glycan-specific broadly neutralizing antibody isolated from a case of HIV superinfection
Cited by: 4
Author(s): Mackenzie M. Shipley, Vidya Mangala Prasad, Laura Doepker, Adam S. Dingens, D. Ralph, Elias Harkins, Amrit Dhar, Dana Arenz, Vrasha Chohan, Haidyn Weight, Kishor Mandaliya, Jesse D Bloom, F. A. Matsen, Kelly K. Lee
Software Mentions: 1
Published: about 5 years ago

10.1264/jsme2.ME17137

Phylogenetic Diversity and Single-Cell Genome Analysis of “Melainabacteria”, a Non-Photosynthetic Cyanobacterial Group, in the Termite Gut
Cited by: 30
Author(s): Yuniar Devi Utami, Hiroya Kuwahara, Takumi Murakami, Takahiro Morikawa, Kaito Sugaya, Kumiko Kihara, Masahiro Yuki, Nathan Lo, Pinsurang Deevong, Sasitorn Hasin, Warin Boonriam, Tsuneo Inoue, Akinori Yamada, Moriya Ohkuma, Yuichi Hongoh
Software Mentions: 1
Published: almost 9 years ago

10.1590/0074-02760200342

SARS-CoV-2 isolation from the first reported patients in Brazil and establishment of a coordinated task network
Cited by: 78
Author(s): Danielle Bastos Araújo, Rafael Rahal Guaragna Machado, Deyvid Amgarten, Fernanda de Mello Malta, Gabriel Guarany de Araujo, Cairo Oliveira Monteiro, Erika Donizette Candido, Camila Pereira Soares, Fernando Gatti de Menezes, Ana Pires, Rúbia Anita Ferraz Santana, Amanda de Oliveira Viana, Erick Gustavo Dorlass, Luciano Matsumiya Thomazelli, Luís Carlos de Sousa Ferreira, Viviane Fongaro Botosso, Cristiane Rodrigues Guzzo Carvalho, Danielle Bruna Leal Oliveira, João Renato Rebello Pinho, Edison Luiz Durigon
Software Mentions: 1
Published: almost 7 years ago

10.1128/genomeA.00861-14

Draft Genome Sequence of Lactobacillus oryzae Strain SG293 T
Cited by: 1
Author(s): Yasuhiro Tanizawa, Takatomo Fujisawa, Takako Mochizuki, Eli Kaminuma, Yasukazu Nakamura, Masanori Tohno
Software Mentions: 1
Published: about 12 years ago

10.1128/genomeA.00612-15

Draft Genome Sequence of Mycobacterium obuense Strain UC1, Isolated from Patient Sputum
Cited by: 5
Author(s): Alexander L. Greninger, Gail Cunningham, Elaine Hsu, Joanna M. Yu, Charles Y. Chiu, Steve Miller
Software Mentions: 1
Published: over 11 years ago

10.1128/genomeA.00630-15

Draft Genome Sequence of Mycobacterium arupense Strain GUC1
Cited by: 0
Author(s): Alexander L. Greninger, Gail Cunningham, Joanna M. Yu, Elaine Hsu, Charles Y. Chiu, Steve Miller
Software Mentions: 1
Published: over 11 years ago

10.1128/genomeA.00930-15

Draft Genome Sequence of Mycobacterium heckeshornense Strain RLE
Cited by: 1
Author(s): Alexander L. Greninger, Gail Cunningham, Charles Y. Chiu, Steve Miller
Software Mentions: 1
Published: about 11 years ago

10.1128/genomeA.00965-15

Complete Genome Sequences of Two Bordetella hinzii Strains Isolated from Humans
Cited by: 5
Author(s): Michael R. Weigand, Shankar Changayil, Yasvanth Kulasekarapandian, M. Lucia Tondella
Software Mentions: 1
Published: about 11 years ago

10.1128/genomeA.01039-15

Genome Sequence of a Novel Iflavirus from mRNA Sequencing of the Pupa of Bombyx mori Inoculated with Cordyceps militaris
Cited by: 9
Author(s): Tomohiro Suzuki, Yoshino Takeshima, Toshiyuki Mikamoto, Jun-David Saeki, Tatsuya Kato, Enoch Y. Park, Hirokazu Kawagishi, Hideo Dohra
Software Mentions: 1
Published: almost 11 years ago

10.1128/genomeA.01334-15

Draft Genome Sequence of the Moderately Heat-Tolerant Lactococcus lactis subsp. lactis bv. diacetylactis Strain GL2 from Algerian Dromedary Milk
Cited by: 1
Author(s): Noujoud Gabed, Meifang Yang, Mohamed Bey Baba Hamed, Habiba Drici, Roy Gross, Thomas Dandekar, Chunguang Liang
Software Mentions: 1
Published: almost 11 years ago

10.1128/genomeA.01625-15

Genome Sequence of Pectobacterium carotovorum Phage PPWS1, Isolated from Japanese Horseradish [ Eutrema japonicum (Miq.) Koidz] Showing Soft-Rot Symptoms
Cited by: 11
Author(s): Haruyuki Hirata, Misako Kashihara, Tokumasa Horiike, Tomohiro Suzuki, Hideo Dohra, Osamu Netsu, Shinji Tsuyumu
Software Mentions: 1
Published: over 10 years ago

10.1128/genomeA.00772-16

Complete Genome Sequence of Highly Virulent Porcine Reproductive and Respiratory Syndrome Virus Variants That Recently Emerged in the United States
Cited by: 6
Author(s): Aspen M. Workman, Timothy P. L. Smith, Fernando A. Osorio, Hiep L.X. Vu
Software Mentions: 1
Published: about 10 years ago

10.1128/genomeA.01094-16

Draft Genome Sequence of Yarrowia lipolytica Strain A-101 Isolated from Polluted Soil in Poland
Cited by: 17
Author(s): Hugo Devillers, François Brunel, Xymena Połomska, Véronique Sarilar, Zbigniew Lazar, Małgorzata Robak, Cécile Neuvéglise
Software Mentions: 1
Published: almost 10 years ago

10.1128/genomeA.01277-16

First Draft Genome Sequences of Neisseria sp. Strain 83E34 and Neisseria sp. Strain 74A18 , Previously Identified as CDC Eugonic Fermenter 4b Species
Cited by: 1
Author(s): Alexander L. Greninger, Jessica Streithorst, Charles Y. Chiu, Steve Miller
Software Mentions: 1
Published: almost 10 years ago

10.1128/genomeA.00924-17

Draft Genome Sequence of the Type Strain Sphingopyxis witflariensis DSM 14551
Cited by: 5
Author(s): Michał A. Kaminski, Ewa M. Furmanczyk, Andrzej Dziembowski, Adam Sobczak, Leszek Lipiński
Software Mentions: 1
Published: about 9 years ago

10.1128/genomeA.00929-17

Conservation and Recombination in the Genome Sequence of Haemophilus influenzae Type f WAPHL1
Cited by: 0
Author(s): Allen C. Bateman, Ailyn C. Pérez-Osorio, Zhen Li, Michael Tran, Alexander L. Greninger
Software Mentions: 1
Published: about 9 years ago

10.1128/genomeA.00182-14

Draft Genome Sequence of Bacillus subtilis QH-1, a Chromium-Reducing Bacterial Strain Isolated in Qinghai Province, China
Cited by: 1
Author(s): Liang Feng, Teng Ma, Junwen Zhang, Fen Xu, Lei Shi
Software Mentions: 1
Published: over 12 years ago

10.1186/s12936-019-2894-8

Proof of concept: used malaria rapid diagnostic tests applied for parallel sequencing for surveillance of molecular markers of anti-malarial resistance in Bissau, Guinea-Bissau during 2014–2017
Cited by: 15
Author(s): Sidsel Nag, Johan Ursing, Amabélia Rodrigues, Marina Crespo, Camilla Krogsgaard, Ole Lund, Frank Møller Aarestrup, Michael Alifrangis, Poul‐Erik Kofoed
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.24942

Identification of core aberrantly expressed microRNAs in serous ovarian carcinoma
Cited by: 20
Author(s): Steven F Chen, Liduan Zheng, Shyambabu Chaurasiya, Thanh H. Dellinger, Jianming Lü, Xiwei Wu, Hanjun Qin, Jinhui Wang, Yuman Fong, Yate-Ching Yuan
Software Mentions: 1
Published: over 8 years ago

10.3390/genes12081216

Mitogenome Phylogeny Including Data from Additional Subspecies Provides New Insights into the Historical Biogeography of the Eurasian lynx Lynx lynx
Cited by: 11
Author(s): Deniz Mengüllüoğlu, Hüseyin Ambarlı, Axel Barlow, Johanna L. A. Paijmans, Ali Onur Sayar, Hasan Emir, İrfan Kandemi̇r, Heribert Hofer, Jörns Fickel, Daniel W. Förster
Software Mentions: 1
Published: about 5 years ago

10.3390/genes11050488

A Functional Network of Novel Barley MicroRNAs and Their Targets in Response to Drought
Cited by: 5
Author(s): Aleksandra Smoczyńska, Andrzej Pacak, Przemysław Nuc, Aleksandra Świda-Barteczka, Katarzyna Kruszka, Wojciech M. Karłowski, Artur Jarmołowski, Zofia Szweykowska-Kulińska
Software Mentions: 1
Published: over 6 years ago

10.3390/genes10050356

Temporal Dynamics of DNA Methylation Patterns in Response to Rearing Juvenile Steelhead (Oncorhynchus mykiss) in a Hatchery versus Simulated Stream Environment
Cited by: 30
Author(s): Mackenzie R. Gavery, Krista M. Nichols, Barry A. Berejikian, Christopher P. Tatara, Giles Goetz, J. F. Dickey, Donald M. Van Doornik, Penny Swanson
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.24441

Identification of differentially expressed miRNAs and miRNA-targeted genes in bladder cancer
Cited by: 18
Author(s): Jong‐Young Lee, Seok Joong Yun, Pildu Jeong, Xuan‐Mei Piao, Ye‐Hwan Kim, Jihye Kim, Sathiyamoorthy Subramaniyam, Young Ho Byun, Ho Won Kang, Soonjoo Seo, Jayoung Kim, Jung Min Kim, Eun Sang Yoo, Isaac Y. Kim, Sung‐Kwon Moon, Yung Hyun Choi, Wun-jae Kim
Software Mentions: 1
Published: over 8 years ago

10.1534/g3.117.300467

Targeted Long-Read Sequencing of a Locus Under Long-Term Balancing Selection inCapsella
Cited by: 8
Author(s): Jörg A. Bachmann, Andrew Tedder, Benjamin Laenen, Kim A. Steige, Tanja Slotte
Software Mentions: 1
Published: over 8 years ago

10.1186/s13059-017-1232-0

EpiTEome: Simultaneous detection of transposable element insertion sites and their DNA methylation levels
Cited by: 18
Author(s): Josquin Daron, R. Keith Slotkin
Software Mentions: 1
Published: over 9 years ago

10.3389/fvets.2020.584724

When the Sum of the Parts Tells You More Than the Whole: The Advantage of Using Metagenomics to Characterize Bartonella spp. Infections in Norway Rats (Rattus norvegicus) and Their Fleas
Cited by: 7
Author(s): Chelsea G. Himsworth, Kaylee A. Byers, Champika Fernando, Laura Speerin, Michael J. Lee, Janet E. Hill
Software Mentions: 1
Published: almost 6 years ago

10.26508/lsa.201900374

ROS amplification drives mouse spermatogonial stem cell self-renewal
Cited by: 20
Author(s): Hiroko Morimoto, Mito Kanastu-Shinohara, Narumi Ogonuki, Satoshi Kamimura, Atsuo Ogura, Chihiro Yabe‐Nishimura, Yoshifumi Mori, Takeshi Morimoto, Satoshi Watanabe, Kinya Otsu, Takuya Yamamoto, Takashi Shinohara
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2015.01144

The Phenotypic and Genetic Underpinnings of Flower Size in Polemoniaceae
Cited by: 19
Author(s): Jacob B. Landis, Rebecca D. O'Toole, Kayla L. Ventura, Matthew A. Gitzendanner, David G Oppenheimer, Douglas E. Soltis, Pamela S. Soltis
Software Mentions: 1
Published: almost 11 years ago

10.3389/fpls.2018.01881

Plant IsomiR Atlas: Large Scale Detection, Profiling, and Target Repertoire of IsomiRs in Plants
Cited by: 7
Author(s): Kun Yang, Xiaopeng Wen, Suresh B. Mudunuri, Gaurav Sablok
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2018.00277

Identifying Host Molecular Features Strongly Linked With Responses to Huanglongbing Disease in Citrus Leaves
Cited by: 22
Author(s): Bipin Balan, Ana María Ibáñez, Abhaya M. Dandekar, Tiziano Caruso, Federico Martinelli
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2015.00633

Transcriptional profiling unravels potential metabolic activities of the olive leaf non-glandular trichome
Cited by: 18
Author(s): Κωνσταντίνος Κουδούνας, Maria Manioudaki, Anna Kourti, Georgios Banilas, Polydefkis Hatzopoulos
Software Mentions: 1
Published: about 11 years ago

10.3389/fpls.2015.00241

Comprehensive analysis of transcriptome response to salinity stress in the halophytic turf grass Sporobolus virginicus
Cited by: 66
Author(s): Nobuto Yamamoto, Tomoyuki Takano, Keisuke Tanaka, Taichiro Ishige, Shin Terashima, Chikara Endo, Takamitsu Kurusu, Seishi Yajima, Kentarô Yano, Yuichi Tada
Software Mentions: 1
Published: over 11 years ago

10.26508/lsa.201800113

Dynamic m6A methylation facilitates mRNA triaging to stress granules
Cited by: 119
Author(s): Maximilian Anders, Irina Chelysheva, Ingrid Goebel, Timo Trenkner, Jun Zhou, Yuanhui Mao, Silvia Verzini, Shu‐Bing Qian, Zoya Ignatova
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2017.01569

Gaining Insight into Exclusive and Common Transcriptomic Features Linked with Biotic Stress Responses in Malus
Cited by: 21
Author(s): Bipin Balan, Tiziano Caruso, Federico Martinelli
Software Mentions: 1
Published: about 9 years ago

10.3389/fphys.2017.00935

Alternative Splicing of NOX4 in the Failing Human Heart
Cited by: 28
Author(s): Zoltán V. Varga, Márton Pipicz, Júlia Aliz Baán, Tamás Baranyai, Gábor Koncsos, Przemysław Leszek, Mariusz Kuśmierczyk, Fátima Sánchez-Cabo, Pablo García‐Pavía, Gábor J. Brenner, Zoltán Giricz, Tamás Csont, Luca Mendler, Enrique Lara‐Pezzi, Pál Pacher, Péter Ferdinándy
Software Mentions: 1
Published: almost 9 years ago

10.3389/fnmol.2017.00435

Delayed Degradation and Impaired Dendritic Delivery of Intron-Lacking EGFP-Arc/Arg3.1 mRNA in EGFP-Arc Transgenic Mice
Cited by: 12
Author(s): Oswald Steward, Kelly Matsudaira Yee, Shannon Farris, Patricia Salgado Pirbhoy, Paul F. Worley, Koji Okamura, Hiroyuki Okuno, Haruhiko Bito
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2021.669910

Comparing Quantitative Methods for Analyzing Sediment DNA Records of Cyanobacteria in Experimental and Reference Lakes
Cited by: 7
Author(s): Hebah Mejbel, William Dodsworth, Alexandre Baud, Irene Gregory‐Eaves, Frances R. Pick
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2017.02084

Genome Replication in Thermococcus kodakarensis Independent of Cdc6 and an Origin of Replication
Cited by: 21
Author(s): Alexandra M. Gehring, David P. Astling, Rie Matsumi, Brett W. Burkhart, Zvi Kelman, John N. Reeve, Kenneth L. Jones, Thomas J. Santangelo
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2019.02848

The Response of Microbiota Community to Streptococcus agalactiae Infection in Zebrafish Intestine
Cited by: 23
Author(s): Qilin Zhang, Hongwei Li, Wei Wu, Man Zhang, Jun Guo, Xian-Yu Deng, Rui Wang, Lin Lü
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2021.635506

Printing Microbial Dark Matter: Using Single Cell Dispensing and Genomics to Investigate the Patescibacteria/Candidate Phyla Radiation
Cited by: 12
Author(s): Sandra Wiegand, Hang T. Dam, Julian Riba, John Vollmers, Anne‐Kristin Kaster
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.637811

Global Trends of Benthic Bacterial Diversity and Community Composition Along Organic Enrichment Gradients of Salmon Farms
Cited by: 10
Author(s): Larissa Frühe, Verena Dully, Dominik Forster, Nigel Keeley, Olivier Laroche, Xavier Pochon, S. Robinson, Thomas A. Wilding, Thorsten Stoeck
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2021.692975

Bifidobacteria Strain Typing by Fourier Transform Infrared Spectroscopy
Cited by: 8
Author(s): Francesca Deidda, Nicole Bozzi Cionci, Miriam Cordovana, Ilenia Campedelli, Fabio Fracchetti, Diana Di Gioia, Simone Ambretti, Marco Pane
Software Mentions: 1
Published: about 5 years ago

10.1186/s13059-020-02091-3

DiMSum: an error model and pipeline for analyzing deep mutational scanning data and diagnosing common experimental pathologies
Cited by: 29
Author(s): Aline Faure, Jörn M. Schmiedel, Pablo Baeza-Centurion, Ben Lehner
Software Mentions: 1
Published: about 6 years ago

10.3389/fmicb.2021.696913

Dynamic Changes in Lung Microbiota of Broilers in Response to Aging and Ammonia Stress
Cited by: 1
Author(s): Jian Chen, Ai Jin, Lei Huang, Yan Zhao, Yuwen Li, Haotian Zhang, Xiaojun Yang, Qingzhu Sun
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2019.00005

Whole-Genome Comparisons Among the Genus Shewanella Reveal the Enrichment of Genes Encoding Ankyrin-Repeats Containing Proteins in Sponge-Associated Bacteria
Cited by: 10
Author(s): Anoop Alex, Agostinho Antunes
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.01005

A Dispensable Chromosome Is Required for Virulence in the Hemibiotrophic Plant Pathogen Colletotrichum higginsianum
Cited by: 37
Author(s): Peter-Louis Plaumann, Johannes Schmidpeter, Marlis Dahl, Leila Taher, Christian A. Koch
Software Mentions: 1
Published: over 8 years ago

10.1186/s13059-020-02241-7

Quantitative profiling of N6-methyladenosine at single-base resolution in stem-differentiating xylem of Populus trichocarpa using Nanopore direct RNA sequencing
Cited by: 69
Author(s): Yanfeng Gao, Xuqing Liu, Bizhi Wu, Huihui Wang, Feihu Xi, Markus V. Kohnen, Anireddy S. N. Reddy, Lianfeng Gu
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2020.591619

Rice Stripe Virus Coat Protein-Mediated Virus Resistance Is Associated With RNA Silencing in Arabidopsis
Cited by: 3
Author(s): Feng Sun, Peisong Hu, Wei Wang, Ying Lan, Linlin Du, Yijun Zhou, Tong Zhou
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2017.00936

Analysis of the Genome and Mobilome of a Dissimilatory Arsenate Reducing Aeromonas sp. O23A Reveals Multiple Mechanisms for Heavy Metal Resistance and Metabolism
Cited by: 18
Author(s): Witold Uhrynowski, Przemysław Decewicz, Łukasz Dziewit, Monika Radlińska, Paweł S. Krawczyk, Leszek Lipiński, Dorota Adamska, Łukasz Drewniak
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.01637

Comparative Genome-Centric Analysis of Freshwater and Marine ANAMMOX Cultures Suggests Functional Redundancy in Nitrogen Removal Processes
Cited by: 32
Author(s): Muhammad Ali, Dario Rangel Shaw, Mads Albertsen, Pascal E. Saikaly
Software Mentions: 1
Published: over 6 years ago

10.26508/lsa.201800249

MiR-146a wild-type 3′ sequence identity is dispensable for proper innate immune function in vivo
Cited by: 4
Author(s): Grant Bertolet, Natee Kongchan, Rebekah Miller, Ravi K. Patel, Antrix Jain, Jong Min Choi, Alexander B. Saltzman, Amber Christenson, Sung Yun Jung, Anna Malovannaya, Andrew Grimson, Joel R. Neilson
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2017.00547

Killer Immunoglobulin-Like Receptor Allele Determination Using Next-Generation Sequencing Technology
Cited by: 22
Author(s): Bercelin Maniangou, Nolwenn Legrand, Mehdi Alizadeh, Ulysse Guyet, Catherine Willem, Grégoire David, Éric Charpentier, Alexandre Walencik, Christelle Retière, Katia Gagne
Software Mentions: 1
Published: over 9 years ago

10.3389/fimmu.2021.673248

Targeted Next-Generation Sequencing Combined With Circulating-Free DNA Deciphers Spatial Heterogeneity of Resected Multifocal Hepatocellular Carcinoma
Cited by: 4
Author(s): Jianzhen Lin, Shuaiguo Zhao, Dongxu Wang, Song Yang, Yue Che, Yang Xu, Jianshan Mao, Fucun Xie, Junyu Long, Yi Bai, Xiaobo Yang, Lei Zhang, Jin Bian, Xin Lu, Xinting Sang, Jie Pan, Kai Wang, Haitao Zhao
Software Mentions: 1
Published: over 5 years ago

10.3389/fimmu.2021.631450

LncRNATUG1 Facilitates Th2 Cell Differentiation by Targeting the miR-29c/B7-H3 Axis on Macrophages
Cited by: 9
Author(s): Hongwei Sun, Ting Wang, Weili Zhang, Husheng Dong, Wenjing Gu, Li Huang, Yan Ya, Canhong Zhu, Zhengrong Chen
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2017.01084

Shrimp miR-10a Is Co-opted by White Spot Syndrome Virus to Increase Viral Gene Expression and Viral Replication
Cited by: 13
Author(s): Jong Shin Huang, Shih-Ting Kang, I-Tung Chen, Li-Kwan Chang, Shih-Shun Lin, Guang Hsiung Kou, Chin‐Chou Chu, Chu Fang Lo
Software Mentions: 1
Published: about 9 years ago

10.3389/fimmu.2018.01331

miR-181a-5p Regulates TNF-α and miR-21a-5p Influences Gualynate-Binding Protein 5 and IL-10 Expression in Macrophages Affecting Host Control of Brucella abortus Infection
Cited by: 24
Author(s): Patrícia Paiva Corsetti, Leonardo Augusto de Almeida, André Nicolau Aquime Gonçalves, Marco Túlio R. Gomes, Erika S. Guimarães, João Trindade Marques, Sérgio C. Oliveira
Software Mentions: 1
Published: over 8 years ago

10.3389/fgene.2014.00130

AlienTrimmer removes adapter oligonucleotides with high sensitivity in short-insert paired-end reads. Commentary on Turner (2014) Assessment of insert sizes and adapter content in FASTQ data from NexteraXT libraries
Cited by: 29
Author(s): Alexis Criscuolo, Sylvain Brisse
Software Mentions: 1
Published: over 12 years ago

10.3389/fgene.2014.00005

Assessment of insert sizes and adapter content in fastq data from NexteraXT libraries
Cited by: 18
Author(s): Frances Turner
Software Mentions: 1
Published: over 12 years ago

10.3389/fgene.2020.591434

Clinical Utility of Exome Sequencing and Reinterpreting Genetic Test Results in Children and Adults With Epilepsy
Cited by: 8
Author(s): Yongli Jiang, Changgeng Song, Yuanyuan Wang, Jingjing Zhao, Fang Yang, Qiong Gao, Xiuxiu Leng, Yu-lin Man, Wen Jiang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2021.628841

The Alteration of M6A-Tagged Transcript Profiles in the Retina of Rats After Traumatic Optic Neuropathy
Cited by: 5
Author(s): Xiaolin Qu, Kaixin Zhu, Zhenxing Li, Danfeng Zhang, Lingling Hou
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2020.612951

Transcriptome Analysis of lncRNA–mRNA Interactions in Chronic Atrophic Gastritis
Cited by: 5
Author(s): Chia-Han Yang, Jingpeng Jin, Liqiang Wang, Xiaobin Jin, Lei Yang, Bin Zhang
Software Mentions: 1
Published: over 5 years ago

10.1093/gbe/evy192

Pan-Parastagonospora Comparative Genome Analysis—Effector Prediction and Genome Evolution
Cited by: 29
Author(s): Robert A. Syme, Kar‐Chun Tan, Kasia Rybak, Timothy L. Friesen, Bruce A. McDonald, Richard P. Oliver, James K. Hane
Software Mentions: 1
Published: about 8 years ago

10.1093/gbe/evy220

Rapid Expansion of a Highly Germline-ExpressedMarinerElement Acquired by Horizontal Transfer in the Fire Ant Genome
Cited by: 6
Author(s): Chih-Chi Lee, John Wang
Software Mentions: 1
Published: about 8 years ago

10.1155/2016/5381871

Genomic Analysis of a Serotype 5Streptococcus pneumoniaeOutbreak in British Columbia, Canada, 2005–2009
Cited by: 6
Author(s): Ruth R. Miller, Morgan G. I. Langille, Vincent Montoya, Anamaria Crisan, Aleksandra Stefanovic, Irene Martín, Linda Hoang, David M. Patrick, Marc G. Romney, Gregory J. Tyrrell, Steven J.M. Jones, Fiona S. L. Brinkman, Patrick Tang
Software Mentions: 1
Published: almost 11 years ago

10.1093/gbe/evz164

Multilocus Analysis Resolves the European Finch Epidemic Strain of Trichomonas gallinae and Suggests Introgression from Divergent Trichomonads
Cited by: 13
Author(s): Abdulwahed Fahad Alrefaei, Ross Low, Neil Hall, Rodrigo Jardim, Alberto M. R. Dávila, Richard W. Gerhold, Shinto K. John, Sascha Steinbiss, Andrew A. Cunningham, Becki Lawson, Diana Bell, Kevin M. Tyler
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2019.00074

Whole Exome Sequencing Identifies a Novel Predisposing Gene, MAPKAP1, for Familial Mixed Mood Disorder
Cited by: 4
Author(s): Chunxia Yang, Suping Li, X Jack, Yang Li, Aixia Zhang, Ning Sun, Yanfang Wang, Yong Xu, Kerang Zhang
Software Mentions: 1
Published: over 7 years ago

10.1007/s10549-020-05836-7

Identification of candidate mediators of chemoresponse in breast cancer through therapy-driven selection of somatic variants
Cited by: 11
Author(s): Waleed S. Al Amri, Diana E. Baxter, Andrew M. Hanby, Lucy F. Stead, Eldo T. Verghese, James L. Thorne, Tom Hughes
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2021.641526

Dissecting the Roles of LncRNAs in the Development of Periventricular White Matter Damage
Cited by: 1
Author(s): Xinyu Wang, Heng Liu, Xiaoli Liao, Lixing Qiao, Lihua Zhu, She–Ching Wu, Yan Zhou, Yi Zhang, Bangbang Li, Lili Lin, Jingjing Ma, Qianying Gu, Jia-Ping Shu
Software Mentions: 1
Published: over 5 years ago

10.3389/fendo.2020.00273

Analysis of Pigment-Dispersing Factor Neuropeptides and Their Receptor in a Velvet Worm
Cited by: 3
Author(s): Christine Martin, Lars Hering, Niklas Metzendorf, Sarah Hormann, Sonja Kasten, Sonja Fuhrmann, Achim Werckenthin, Friedrich W. Herberg, Monika Stengl, Georg Mayer
Software Mentions: 1
Published: over 6 years ago

10.1186/s13058-017-0929-z

Evaluating the breast cancer predisposition role of rare variants in genes associated with low-penetrance breast cancer risk SNPs
Cited by: 21
Author(s): Na Li, Simone M. Rowley, Ella R. Thompson, Simone McInerny, Lisa Devereux, Kaushalya Amarasinghe, Magnus Zethoven, Richard Lupat, David Goode, Jason Li, Alison H. Trainer, Kylie L. Gorringe, Paul James, Ian Campbell
Software Mentions: 1
Published: almost 9 years ago

10.3389/fcimb.2021.709681

Aerobactin Seems To Be a Promising Marker Compared With Unstable RmpA2 for the Identification of Hypervirulent Carbapenem-Resistant Klebsiella pneumoniae: In Silico and In Vitro Evidence
Cited by: 24
Author(s): Chaitra Shankar, Soumya Basu, Binesh Lal, Sathiya Shanmugam, Karthick Vasudevan, Purva Mathur, Sudha Ramaiah, Anand Anbarasu, Balaji Veeraraghavan
Software Mentions: 1
Published: about 5 years ago

Projects: pypi: cutadapt

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Papers Mentioning cutadapt 1,562