Ecosyste.ms: Papers

10.1371/journal.pone.0224079

Typological analysis of public-private partnerships in the veterinary domain
Cited by: 11
Author(s): Margot Galiere, Marisa Peyre, Facundo Muñoz, Mariline Poupaud, A. Dehove, François Roger, Isabelle Dieuzy-Labaye
Software Mentions: 7
Published: about 5 years ago

10.1002/ece3.7777

Fine‐scale movements and behaviors of coyotes (<i>Canis latrans</i>) during their reproductive period
Cited by: 5
Author(s): Michael J. Chamberlain, Bradley S. Cohen, Patrick H. Wightman, Emily Rushton, Joseph W. Hinton
Software Mentions: 7
Published: over 3 years ago

10.1186/cc11667

Identification of sepsis subtypes in critically ill adults using gene expression profiling
Cited by: 47
Author(s): David Maslove, Benjamin Tang, Anthony S. McLean
Software Mentions: 7
Published: almost 13 years ago

10.1016/j.jim.2016.02.023

Comparative genomics analysis of mononuclear phagocyte subsets confirms homology between lymphoid tissue-resident and dermal XCR1+ DCs in mouse and human and distinguishes them from Langerhans cells
Cited by: 44
Author(s): Sabrina Carpentier, Thien‐Phong Vu Manh, Rabie Chelbi, Sandrine Henri, Bernard Malissen, Muzlifah Haniffa, Florent Ginhoux, Marc Dalod
Software Mentions: 7
Published: over 8 years ago

10.3389/fpsyg.2018.01748

The Semantic Content of Abstract Concepts: A Property Listing Study of 296 Abstract Words
Cited by: 57
Author(s): Marcel Harpaintner, Natalie M. Trumpp, Markus Kiefer
Software Mentions: 7
Published: about 6 years ago

10.7717/peerj.11105

The biosonar of the boto: evidence of differences among species of river dolphins (<i>Inia</i>spp.) from the Amazon
Cited by: 2
Author(s): Jéssica Fernandes de Melo, Thiago Orion Simões Amorim, Mariana Paschoalini, Artur Andriolo
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0196117

Identification of a neutrophil-related gene expression signature that is enriched in adult systemic lupus erythematosus patients with active nephritis: Clinical/pathologic associations and etiologic mechanisms
Cited by: 37
Author(s): Joan E. Wither, Stephenie D. Prokopec, Babak Noamani, Nan-Hua Chang, Dennisse Bonilla, Zahi Touma, Carmen Ávila-Casado, Heather N. Reich, James W. Scholey, Paul R. Fortin, Paul C. Boutros, Carolina Landolt-Marticorena
Software Mentions: 7
Published: over 6 years ago

10.7717/peerj.5319

Comparative chemical analysis of army ant mandibular gland volatiles (Formicidae: Dorylinae)
Cited by: 11
Author(s): Adrian Brückner, Philipp O. Hoenle, Christoph von Beeren
Software Mentions: 7
Published: over 6 years ago

10.3390/microorganisms9030557

The Composition and Diversity of the Gut Microbiota in Children Is Modifiable by the Household Dogs: Impact of a Canine-Specific Probiotic
Cited by: 10
Author(s): Carlos Gómez-Gallego, Mira Forsgren, Marta Selma‐Royo, Merja Nermes, María Carmen Collado, Seppo Salminen, Shea Beasley, Erika Isolauri
Software Mentions: 7
Published: over 3 years ago

10.1186/1751-0473-7-13

MALINA: a web service for visual analytics of human gut microbiota whole-genome metagenomic reads
Cited by: 4
Author(s): Alexander Tyakht, Anna Popenko, Maxim S. Belenikin, Ilya Altukhov, Alexander V. Pavlenko, Elena S. Kostryukova, Oksana V. Selezneva, Andrei K. Larin, Irina Y. Karpova, Dmitry Alexeev
Software Mentions: 7
Published: almost 12 years ago

10.1128/mSphere.00806-20

Raman Spectroscopy-Based Measurements of Single-Cell Phenotypic Diversity in Microbial Populations
Cited by: 15
Author(s): Cristina García‐Timermans, Ruben Props, Boris Zacchetti, Myrsini Sakarika, Frank Delvigne, Nico Boon
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0007225

MicroRNAs Show Mutually Exclusive Expression Patterns in the Brain of Adult Male Rats
Cited by: 94
Author(s): Line Olsen, Mikkel Klausen, Lone Helboe, Finn Cilius Nielsen, Thomas Werge
Software Mentions: 7
Published: about 15 years ago

10.3390/nu13062081

Effects of a Diet Based on Foods from Symbiotic Agriculture on the Gut Microbiota of Subjects at Risk for Metabolic Syndrome
Cited by: 4
Author(s): Silvia Turroni, Elisabetta Petracci, Valeria Edefonti, Anna Maria Giudetti, Federica D’Amico, Lisa Paganelli, Giusto Giovannetti, Laura Del Coco, Francesco Paolo Fanizzi, Simone Rampelli, Débora Antoniazi Del Guerra, Claudia Rengucci, Jenny Bulgarelli, Marcella Tazzari, Nicoletta Pellegrini, Monica Ferraroni, Oriana Nanni, Patrizia Serra
Software Mentions: 7
Published: over 3 years ago

10.1002/cam4.343

The transcriptomic profile of ovarian cancer grading
Cited by: 2
Author(s): Cindy Q. Yao, Francis Nguyen, Syed Haider, Maud H.W. Starmans, Philippe Lambin, Paul C. Boutros
Software Mentions: 7
Published: about 10 years ago

10.1038/s41598-019-51786-6

Restructuring of the ‘Macaronesia’ biogeographic unit: A marine multi-taxon biogeographical approach
Cited by: 76
Author(s): Rui Freitas, Maria M. Romeiras, Luís Silva, Ricardo Cordeiro, Patrícia Madeira, José A. González, Peter Wirtz, Jésus J.M. Falcón, Alberto Brito, Sergio R. Floeter, Pedro Afonso, Filipe M. Porteiro, María Ascensión Viera-Rodríguez, Ana I. Neto, Ricardo Haroun, João N.M. Farminhão, Ana Cristina Rebelo, Lara Baptista, Carlos Melo, Alejandro Junquera Martínez, Jorge Núñez, Björn Berning, Markes M.E. Johnson, Sérgio P. Ávila
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-018-33944-4

Case studies on potential G-quadruplex-forming sequences from the bacterial orders Deinococcales and Thermales derived from a survey of published genomes
Cited by: 32
Author(s): Yun Ding, Aaron M. Fleming, Cynthia J. Burrows
Software Mentions: 6
Published: about 6 years ago

10.1186/1471-2105-15-170

Ensemble analyses improve signatures of tumour hypoxia and reveal inter-platform differences
Cited by: 24
Author(s): Natalie S. Fox, Maud H.W. Starmans, Syed Haider, Philippe Lambin, Paul C. Boutros
Software Mentions: 6
Published: over 10 years ago

10.3390/v12101148

Review of Hepatitis E Virus in Rats: Evident Risk of Species Orthohepevirus C to Human Zoonotic Infection and Disease
Cited by: 36
Author(s): Gábor Reuter, Ákos Boros, Péter Pankovics
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.ppat.1009454

Effector and regulator: Diverse functions of C. elegans C-type lectin-like domain proteins
Cited by: 17
Author(s): Barbara Pees, Wentao Yang, Anke Kloock, Carola Petersen, Lena Peters, Liancheng Fan, Meike Friedrichsen, Sabrina Butze, Alejandra Zárate-Potes, Hinrich Schulenburg, Katja Dierking
Software Mentions: 6
Published: over 3 years ago

10.1186/s12862-016-0766-1

Why do different oceanic archipelagos harbour contrasting levels of species diversity? The macaronesian endemic genus Pericallis (Asteraceae) provides insight into explaining the ‘Azores diversity Enigma’
Cited by: 4
Author(s): K. Jones, Sílvia Pérez‐Espona, J. Alfredo Reyes‐Betancort, David Pattinson, Juli Caujapé‐Castells, Simon J. Hiscock, Mark A. Carine
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pone.0181033

Transcriptomic and metabolomic profiles of Chinese citrus fly, Bactrocera minax (Diptera: Tephritidae), along with pupal development provide insight into diapause program
Cited by: 14
Author(s): Jia Wang, Hong-Tao Fan, Ke-Cai Xiong, Ying‐Hong Liu
Software Mentions: 6
Published: over 7 years ago

10.1002/2211-5463.12327

Multiple-cumulative probabilities used to cluster and visualize transcriptomes
Cited by: 4
Author(s): Xueping Jia, Yisu Liu, Qiuhong Han, Lu Zhang
Software Mentions: 6
Published: about 7 years ago

10.3390/jcm8101524

Rethinking Lupus Nephritis Classification on a Molecular Level
Cited by: 16
Author(s): Salem Almaani, Stephenie D. Prokopec, Jianying Zhang, Lianbo Yu, Carmen Ávila-Casado, Joan E. Wither, James W. Scholey, Valeria Albertón, Ana Malvar, Samir Parikh, Paul C. Boutros, Brad H. Rovin, Heather N. Reich
Software Mentions: 6
Published: about 5 years ago

10.3390/microorganisms8020175

Biostimulating Gut Microbiome with Bilberry Anthocyanin Combo to Enhance Anti-PD-L1 Efficiency against Murine Colon Cancer
Cited by: 35
Author(s): Xuerun Liu, Luoyang Wang, Nan Jing, Guoqiang Jiang, Zheng Liu
Software Mentions: 6
Published: almost 5 years ago

10.1002/ece3.7505

Valley‐scale hydrogeomorphology drives river fish assemblage variation in Mongolia
Cited by: 8
Author(s): Alain Maasri, Mark Pyron, Emily R. Arsenault, James H. Thorp, Bud Mendsaikhan, Flavia Tromboni, Mario Minder, Scott J. Kenner, John H. Costello, Sudeep Chandra, Amarbat Otgonganbat, Bazartseren Boldgiv
Software Mentions: 6
Published: over 3 years ago

10.3390/microorganisms9010127

Gut Microbiota and Short-Chain Fatty Acid Profile between Normal and Moderate Malnutrition Children in Yogyakarta, Indonesia
Cited by: 15
Author(s): Rafli Zulfa Kamil, Agnes Murdiati, Mohammad Juffrie, Jiro Nakayama, Endang Sutriswati Rahayu
Software Mentions: 6
Published: almost 4 years ago

10.1016/j.jbc.2021.100877

The RNA-binding protein Nab2 regulates the proteome of the developing Drosophila brain
Cited by: 4
Author(s): Edwin B. Corgiat, Sara M. List, J. Christopher Rounds, Anita H. Corbett, Kenneth H. Moberg
Software Mentions: 6
Published: over 3 years ago

10.3390/microorganisms8071004

Relationship between the Oral and Vaginal Microbiota of South African Adolescents with High Prevalence of Bacterial Vaginosis
Cited by: 11
Author(s): Christina Balle, Rachel Esra, Enock Havyarimana, Shameem Z. Jaumdally, Katie Lennard, Iyaloo N. Konstantinus, Shaun Barnabas, Anna‐Ursula Happel, Katherine Gill, Tanya Pidwell, Jairam R. Lingappa, Hoyam Gamieldien, Linda‐Gail Bekker, Jo‐Ann S. Passmore, Heather B. Jaspan
Software Mentions: 6
Published: over 4 years ago

10.3390/ijms22063028

Characterization of Biological Pathways Regulating Acute Cold Resistance of Zebrafish
Cited by: 19
Author(s): Jing Ren, Yong Long, Ran Liu, Guangliang Song, Qing Li, Zongbin Cui
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0064212

Differential Response of the Cynomolgus Macaque Gut Microbiota to Shigella Infection
Cited by: 52
Author(s): Anna M. Seekatz, Aruna Panda, David A. Rasko, Franklin R. Toapanta, Emiley A. Eloe‐Fadrosh, Abdul Qayyum Khan, Zhenqiu Liu, Steven T. Shipley, Louis J. DeTolla, Marcelo B. Sztein, Claire M. Fraser
Software Mentions: 6
Published: over 11 years ago

10.1002/ece3.5627

How do trees respond to species mixing in experimental compared to observational studies?
Cited by: 7
Author(s): Stephan Kambach, Eric Allan, Simon Bilodeau‐Gauthier, David A. Coomes, Joséphine Haase, Tommaso Jucker, Georges Künstler, Sandra Müller, Charles A. Nock, Alain Paquette, Fons van der Plas, Sophia Ratcliffe, Fabian Roger, Paloma Ruiz‐Benito, Michael Scherer‐Lorenzen, Harald Auge, Olivier Bouriaud, Bastien Castagneyrol, Jonas Dahlgren, Lars Gamfeldt, Hervé Jactel, Gerald Kändler, Julia Koricheva, Aleksi Lehtonen, Bart Muys, Quentin Ponette, Nuri Nurlaila Setiawan, Thomas Peer, Kris Verheyen, M. Zavala, Helge Bruelheide
Software Mentions: 6
Published: about 5 years ago

10.1186/s40168-015-0107-4

Ecology of bacteria in the human gastrointestinal tract—identification of keystone and foundation taxa
Cited by: 109
Author(s): Pål Trosvik, Eric J. de Muinck
Software Mentions: 6
Published: about 9 years ago

10.1371/journal.pone.0081458

Stability-Based Comparison of Class Discovery Methods for DNA Copy Number Profiles
Cited by: 1
Author(s): Isabel Martínez Brito, Philippe Hupé, Pierre Neuvial, Emmanuel Barillot
Software Mentions: 6
Published: almost 11 years ago

10.1038/gim.2015.156

VisCap: inference and visualization of germ-line copy-number variants from targeted clinical sequencing data
Cited by: 58
Author(s): Trevor J. Pugh, Sami S. Amr, Mark J. Bowser, Sivakumar Gowrisankar, Elizabeth Hynes, Lisa Mahanta, Heidi L. Rehm, Birgit Funke, Matthew S. Lebo
Software Mentions: 6
Published: over 8 years ago

10.3390/cancers13092248

Claudin-Low Breast Cancer Inflammatory Signatures Support Polarization of M1-Like Macrophages with Protumoral Activity
Cited by: 7
Author(s): Mayra C. Suárez-Arriaga, Alfonso Méndez‐Tenorio, Vadim Pérez‐Koldenkova, Ezequiel M. Fuentes‐Pananá
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0054835

Base-Calling Algorithm with Vocabulary (BCV) Method for Analyzing Population Sequencing Chromatograms
Cited by: 10
Author(s): Yuri S. Fantin, Alexey D. Neverov, Alexander V. Favorov, Maria V. Alvarez-Figueroa, Svetlana I. Braslavskaya, М. А. Гордукова, И. В. Карандашова, Konstantin V. Kuleshov, Anna I. Myznikova, M. S. Polishchuk, Denis A. Reshetov, Yana A. Voiciehovskaya, А. Миронов, Vladimir Chulanov
Software Mentions: 6
Published: almost 12 years ago

10.3389/fpsyg.2019.00862

Experimental Investigation on the Elicitation of Subjective Distributions
Cited by: 6
Author(s): Carlos Barrera-Causil, Juan Carlos Correa, Fernando Marmolejo‐Ramos
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0101556

Diversity, Abundance and Community Structure of Benthic Macro- and Megafauna on the Beaufort Shelf and Slope
Cited by: 21
Author(s): Jessica Nephin, S. Kim Juniper, Philippe Archambault
Software Mentions: 6
Published: over 10 years ago

10.3389/fpls.2020.00054

Winter Wheat Yield Response to Plant Density as a Function of Yield Environment and Tillering Potential: A Review and Field Studies
Cited by: 58
Author(s): Leonardo M. Bastos, Walter D. Carciochi, Romulo P. Lollato, B. R. Jaenisch, Caio R Rezende, Raíssa Schwalbert, P. V. Vara Prasad, Guorong Zhang, Allan K. Fritz, Chris Foster, Yancy Wright, S. Emory Young, Pauley R. Bradley, Ignacio A. Ciampitti
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-021-93970-7

Genomic evolution of antimicrobial resistance in Escherichia coli
Cited by: 19
Author(s): Pimlapas Leekitcharoenphon, Markus Johansson, Patrick Munk, Burkhard Malorny, Magdalena Skarżyńska, Katharina Wadepohl, Gabriel Moyano, Ayla Hesp, Kees Veldman, Alex Bossers, Magdalena Zając, Dariusz Wasyl, Pascal Sandérs, B. Gonzales-Zorn, Michael S.M. Brouwer, Jaap A. Wagenaar, Dick Heederik, Dik Mevius, Frank Møller Aarestrup
Software Mentions: 6
Published: over 3 years ago

10.1038/mt.2014.86

Characterizing Human Stem Cell–derived Sensory Neurons at the Single-cell Level Reveals Their Ion Channel Expression and Utility in Pain Research
Cited by: 105
Author(s): Gareth T. Young, Alex Gutteridge, Heather De Fox, Anna Wilbrey, Lishuang Cao, Lily T Cho, Adam R. Brown, Caroline Benn, Laura R Kammonen, Julia Friedman, Magda Bictash, Paul Whiting, James Bilsland, Edward B. Stevens
Software Mentions: 6
Published: over 10 years ago

10.1371/journal.pone.0187612

Association of high-risk sexual behaviour with diversity of the vaginal microbiota and abundance of Lactobacillus
Cited by: 39
Author(s): Jocelyn M. Wessels, Julie Lajoie, Danielle Vitali, Kenneth Omollo, Joshua Kimani, Julius Oyugi, Juliana Cheruiyot, Murungaru Kimani, Joseph Maina Mungai, Maureen Akolo, Jennifer C. Stearns, Michael G. Surette, Keith R. Fowke, Charu Kaushic
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-020-80533-5

Structural aspects of lesional and non-lesional skin microbiota reveal key community changes in leprosy patients from India
Cited by: 5
Author(s): Nitin Bayal, Sunil Nagpal, Mohammed Monzoorul Haque, Milind S. Patole, Yogesh S. Shouche, Shekhar C. Mande, Sharmila S. Mande
Software Mentions: 6
Published: almost 4 years ago

10.7554/eLife.58371

Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis
Cited by: 17
Author(s): Tjorven Hinzke, Manuel Kleiner, Mareike Meister, Rabea Schlüter, Christian Hentschker, Jan Pané‐Farré, Petra Hildebrandt, Horst Felbeck, Stefan M. Sievert, Florian Bonn, Uwe Völker, Dörte Becher, Thomas Schweder, Stephanie Markert
Software Mentions: 6
Published: almost 4 years ago

10.3390/insects12040367

Biological Strategies of Invasive Bark Beetles and Borers Species
Cited by: 3
Author(s): Denis A. Demidko, Natalia N. Demidko, Pavel V. Mikhaylov, Svetlana M. Sultson
Software Mentions: 6
Published: over 3 years ago

10.1186/1471-2164-14-850

Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle
Cited by: 62
Author(s): Erin D. Scully, Kelli Hoover, John E. Carlson, Ming Tien, Scott M. Geib
Software Mentions: 5
Published: almost 11 years ago

10.1038/s41598-020-67782-0

Elongating maize root: zone-specific combinations of polysaccharides from type I and type II primary cell walls
Cited by: 27
Author(s): Liudmila Kozlova, Alsu Nazipova, Oleg Gorshkov, Anna A. Petrova, Т. А. Горшкова
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pgen.1005305

Identification of Chemical Inhibitors of β-Catenin-Driven Liver Tumorigenesis in Zebrafish
Cited by: 62
Author(s): Kimberley Evason, Macrina T. Francisco, Vladislava Juric, Sanjeev Balakrishnan, Maria del Pilar Lopez Pazmino, John D. Gordan, Sanjay Kakar, Jan M. Spitsbergen, Andrei Goga, Didier Y. R. Stainier
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pcbi.1007904

Restriction of S-adenosylmethionine conformational freedom by knotted protein binding sites
Cited by: 7
Author(s): Agata P. Perlinska, Adam Stasiulewicz, Ewa K. Nawrocka, Krzysztof Kazimierczuk, Piotr Setny, Joanna I. Sułkowska
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-017-10334-w

A functional approach to the structural complexity of coral assemblages based on colony morphological features
Cited by: 42
Author(s): Vianney Denis, Lauriane Ribas-Deulofeu, Nicolas Sturaro, Chao‐Yang Kuo, Chaolun Allen Chen
Software Mentions: 5
Published: about 7 years ago

10.3390/plants10040653

The Distribution of Minerals in Crucial Plant Parts of Various Elderberry (Sambucus spp.) Interspecific Hybrids
Cited by: 8
Author(s): Nataša Imenšek, Vilma Sem, Mitja Kolar, Anton Ivančič, Janja Kristl
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-020-68617-8

The origin of early Acheulean expansion in Europe 700 ka ago: new findings at Notarchirico (Italy)
Cited by: 34
Author(s): Marie‐Hélène Moncel, Carmen Santagata, Alison Pereira, Sébastien Nomade, Pierre Voinchet, Jean‐Jacques Bahain, Camille Daujeard, Antonio Curci, Cristina Lemorini, Bruce Hardy, Giacomo Eramo, Claudio Berto, Jean‐Paul Raynal, Marta Arzarello, Beniamino Mecozzi, Alessio Iannucci, Raffaele Sardella, Ignazio Allegretta, Emanuela Delluniversità, Roberto Terzano, Pauline Dugas, Gwenolé Jouanic, Alain Queffelec, Andrea D’Andrea, Rosario Valentini, Eleonora Minucci, Laura Carpentiero, Marcello Piperno
Software Mentions: 5
Published: over 4 years ago

10.1186/s12913-017-2816-9

Impact of a New York City supportive housing program on Medicaid expenditure patterns among people with serious mental illness and chronic homelessness
Cited by: 18
Author(s): Sungwoo Lim, Qi Gao, Elsa Stazesky, Tejinder Singh, Tiffany G. Harris, Amber Levanon Seligson
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmed.2017.00153

TruSeq-Based Gene Expression Analysis of Formalin-Fixed Paraffin-Embedded (FFPE) Cutaneous T-Cell Lymphoma Samples: Subgroup Analysis Results and Elucidation of Biases from FFPE Sample Processing on the TruSeq Platform
Cited by: 15
Author(s): Philippe Lefrançois, Michael T. Tetzlaff, Linda Moreau, Andrew Watters, Elena Netchiporouk, Nathalie Provost, Martin Gilbert, Xiao Ni, Denis Sasseville, Madeleine Duvic, Ivan V. Litvinov
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0220692

Improving methodology in heart rate variability analysis for the premature infants: Impact of the time length
Cited by: 13
Author(s): Trang Nguyen Phuc Thu, Alfredo Hernández, Nathalie Costet, Hugues Patural, Vincent Pichot, Guy Carrault, Alain Beuchée
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2016.00774

Stable Isotope Phenotyping via Cluster Analysis of NanoSIMS Data As a Method for Characterizing Distinct Microbial Ecophysiologies and Sulfur-Cycling in the Environment
Cited by: 19
Author(s): Katherine S. Dawson, Silvan Scheller, Jesse G. Dillon, Victoria J. Orphan
Software Mentions: 5
Published: over 8 years ago

10.1038/srep16971

Combined Mapping of Multiple clUsteriNg ALgorithms (COMMUNAL): A Robust Method for Selection of Cluster Number, K
Cited by: 15
Author(s): Timothy E. Sweeney, Albert C. Chen, Olivier Gevaert
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pone.0223949

Megabenthic communities of the Ligurian deep continental shelf and shelf break (NW Mediterranean Sea)
Cited by: 35
Author(s): Francesco Enrichetti, Carlos Domínguez-Carrió, Margherita Toma, Giorgio Bavestrello, Federico Betti, Simonepietro Canese, Marzia Bo
Software Mentions: 5
Published: about 5 years ago

10.3390/jcm10102159

Adverse Life Trajectories Are a Risk Factor for SARS-CoV-2 IgA Seropositivity
Cited by: 0
Author(s): Cyrielle Holuka, Chantal J. Snoeck, Sophie B. Mériaux, Markus Ollert, Rejko Krüger, Jonathan D. Turner
Software Mentions: 5
Published: over 3 years ago

10.1590/0037-8682-0470-2019

Evaluation of genome similarities using a wavelet-domain approach
Cited by: 2
Author(s): Leila Maria Ferreira, Thelma Sáfadi, Juliano Lino Ferreira
Software Mentions: 5
Published: almost 5 years ago

10.3390/nu12041170

Quantifying Diet Intake and Its Association with Cardiometabolic Risk in the UK Airwave Health Monitoring Study: A Data-Driven Approach
Cited by: 3
Author(s): Larissa C Hunt, Hassan S. Dashti, Queenie Chan, Rachel Gibson, Céline Vetter
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0244666

On genetic diversity in caraway: Genotyping of a large germplasm collection
Cited by: 2
Author(s): Daniel von Maydell, Heike Lehnert, Thomas Berner, Evelyn Klocke, Wolfram Junghanns, Jens Keilwagen, Frank Marthe
Software Mentions: 5
Published: almost 4 years ago

10.1186/1471-2407-10-351

Characterization of the apoptotic response of human leukemia cells to organosulfur compounds
Cited by: 7
Author(s): Wendy Wei-Lynn Wong, Paul C. Boutros, Amanda R. Wasylishen, Kristal D. Guckert, Erin M. O’Brien, Rebecca E. Griffiths, Anna Martirosyan, Christina Bros, Igor Jurišica, Richard Francis Langler, Linda Z. Penn
Software Mentions: 5
Published: over 14 years ago

10.1002/ece3.7336

Deep reefs are not refugium for shallow‐water fish communities in the southwestern Atlantic
Cited by: 14
Author(s): Aline P. M. Medeiros, Beatrice Padovani Ferreira, Fredy Alvarado, Ricardo Betancur‐R, Marcelo de Oliveira Soares, Bráulio A. Santos
Software Mentions: 5
Published: over 3 years ago

10.1186/s40168-020-00969-9

Associations between habitual diet, metabolic disease, and the gut microbiota using latent Dirichlet allocation
Cited by: 39
Author(s): Taylor A. Breuninger, Nina Wawro, Jakob Breuninger, Sandra Reitmeier, Thomas Clavel, Julia Six-Merker, Giulia Pestoni, Sabine Rohrmann, Wolfgang Rathmann, Annette Peters, Harald Grallert, Christa Meisinger, Dirk Haller, Jakob Linseisen
Software Mentions: 5
Published: over 3 years ago

10.3390/ijms22041778

Association of Maternal Microbiota and Diet in Cord Blood Cytokine and Immunoglobulin Profiles
Cited by: 11
Author(s): Karla Rio-Aigé, Ignasi Azagra-Boronat, Malén Massot-Cladera, Marta Selma‐Royo, Anna Parra-Llorca, Sonia González, Izaskun García-Mantrana, Cristina Castellote, María J. Rodríguez-Lagunas, María Carmen Collado, Francisco J. Pérez-Cano
Software Mentions: 5
Published: almost 4 years ago

10.3390/ijms21124199

CCR5-Mediated Signaling is Involved in Invasion of Glioblastoma Cells in Its Microenvironment
Cited by: 39
Author(s): Metka Novak, Miha Koprivnikar Krajnc, Barbara Hrastar, Barbara Breznik, Bernarda Majc, Mateja Mlinar, Ana Rotter, Andrej Porčnik, Jernej Mlakar, Katja Stare, Richard G. Pestell, Tamara Lah Turnšek
Software Mentions: 5
Published: over 4 years ago

10.1002/ece3.6219

Keeping it cool: Soil sample cold pack storage and DNA shipment up to 1 month does not impact metabarcoding results
Cited by: 17
Author(s): Camille S. Delavaux, James D. Bever, Erin M. Karppinen, Luke D. Bainard
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0204236

In silico analysis of the Mus musculus uterine gene expression landscape during pregnancy identifies putative upstream regulators for labour
Cited by: 1
Author(s): Febilla Fernando, Souad Boussata, Aldo Jongejan, Joris A. M. van der Post, Gijs B. Afink, Carrie Ris‐Stalpers
Software Mentions: 5
Published: about 6 years ago

10.1155/2018/8395651

A Specific Circulating MicroRNA Cluster Is Associated to Late Differential Cardiac Response to Doxorubicin-Induced Cardiotoxicity <i>In Vivo</i>
Cited by: 18
Author(s): Clarissa Ruggeri, Sonia Gioffré, Mattia Chiesa, Marta Buzzetti, Giuseppina Milano, Alessandro Scopece, Laura Castiglioni, Marta Pontremoli, Luigi Sironi, Giulio Pompilio, Gualtiero I. Colombo, Yuri D’Alessandra
Software Mentions: 5
Published: almost 6 years ago

10.1016/j.csbj.2021.05.028

Distinguishing between PTEN clinical phenotypes through mutation analysis
Cited by: 14
Author(s): Stephanie Portelli, Lucy Barr, Alex Guimarães Cardoso de Sá, Douglas E. V. Pires, David B. Ascher
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13148-020-00879-5

G9a regulates tumorigenicity and stemness through genome-wide DNA methylation reprogramming in non-small cell lung cancer
Cited by: 25
Author(s): Rajendra P. Pangeni, Lu Yang, Keqiang Zhang, Jinhui Wang, Wendong Li, Chao Guo, Xinwei Yun, Ting Sun, Jami Wang, Dan J. Raz
Software Mentions: 5
Published: over 4 years ago

10.3390/metabo11010020

Identifying Personalized Metabolic Signatures in Breast Cancer
Cited by: 8
Author(s): Priyanka Baloni, Wikum Dinalankara, John C. Earls, Theo Knijnenburg, Donald Geman, Luigi Marchionni, Nathan D. Price
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12964-019-0326-6

Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells
Cited by: 11
Author(s): Jaime Santo‐Domingo, Antonio Núñez Galindo, Ornella Cominetti, Umberto De Marchi, Pedro R. Cutillas, Loïc Dayon, Andreas Wiederkehr
Software Mentions: 5
Published: almost 6 years ago

10.1186/1471-2164-15-537

Distribution of segmental duplications in the context of higher order chromatin organisation of human chromosome 7
Cited by: 6
Author(s): Grit Ebert, Anne Steininger, Robert Weißmann, Vivien Boldt, Allan Lind-Thomsen, Jana Grune, Stefan Badelt, Melanie Heßler, Matthias Peiser, Manuel Hitzler, Lars Riff Jensen, Ines Müller, Hao Hu, Peter F. Arndt, Andreas W. Kuß, Katrin Tebel, Reinhard Ullmann
Software Mentions: 5
Published: over 10 years ago

10.3390/cancers12061393

Anti-EGFR Therapy Induces EGF Secretion by Cancer-Associated Fibroblasts to Confer Colorectal Cancer Chemoresistance
Cited by: 37
Author(s): Colleen M. Garvey, Roy Lau, Alyssa Sanchez, Ren Sun, Emma Fong, Michael E. Doche, Oscar Chen, Anthony Jusuf, Heinz‐Josef Lenz, Brent K. Larson, Shannon M. Mumenthaler
Software Mentions: 5
Published: over 4 years ago

10.1242/dev.160614

Distinct prophase arrest mechanisms in human male meiosis
Cited by: 24
Author(s): Sabrina Z. Jan, Aldo Jongejan, Cindy M. Korver, Saskia K.M. van Daalen, Ans M.M. van Pelt, Sjoerd Repping, Geert Hamer
Software Mentions: 5
Published: almost 7 years ago

10.3390/cancers11010041

Epilepsy Associates with Decreased HIF-1α/STAT5b Signaling in Glioblastoma
Cited by: 11
Author(s): Sharon Berendsen, Wim G.M. Spliet, Marjolein Geurts, Wim Van Hecke, Tatjana Seute, Tom J. Snijders, Vincent Bours, Erica H. Bell, Arnab Chakravarti, Pierre A. Robe
Software Mentions: 5
Published: almost 6 years ago

10.7150/thno.57775

Machine learning-assisted immune profiling stratifies peri-implantitis patients with unique microbial colonization and clinical outcomes
Cited by: 20
Author(s): Chin-Wei Wang, Yuning Hao, Riccardo Di Gianfilippo, James V. Sugai, Jiaqian Li, Wang Gong, Kenneth S. Kornman, Hom‐Lay Wang, Nobuhiko Kamada, Yuying Xie, William V. Giannobile, Yu Lei
Software Mentions: 5
Published: almost 4 years ago

10.3389/fpls.2019.00306

Limitations at the Limit? Diminishing of Genetic Effects in Norway Spruce Provenance Trials
Cited by: 31
Author(s): Marcin Klisz, Allan Buras, Ute Sass‐Klaassen, Radosław Puchałka, Marcin Koprowski, Joanna Ukalska
Software Mentions: 5
Published: over 5 years ago

10.3389/fpsyg.2021.667173

Dimensions and Clusters of Aesthetic Emotions: A Semantic Profile Analysis
Cited by: 4
Author(s): Ursula Beermann, Georg Hosoya, Ines Schindler, Klaus R. Scherer, Michael Eid, Valentin Wagner, Winfried Menninghaus
Software Mentions: 5
Published: over 3 years ago

10.1186/gb-2014-15-8-r70

DNA copy number evolution in Drosophila cell lines
Cited by: 94
Author(s): Hangnoh Lee, C. Joel McManus, Dong-Yeon Cho, Matthew L. Eaton, Fioranna Renda, Maria Patrizia Somma, Lucy Cherbas, Gemma E. May, Sara Powell, Dayu Zhang, Lijun Zhan, Alissa Resch, Justen Andrews, S Celniker, Peter Cherbas, Teresa M. Przytycka, Maurizio Gatti, Brian Oliver, Brenton R. Graveley, David M. MacAlpine
Software Mentions: 5
Published: over 10 years ago

10.1155/2019/6151587

Direct Extracellular Electron Transfer of the <i>Geobacter sulfurreducens</i> Pili Relevant to Interaromatic Distances
Cited by: 6
Author(s): Chuanjun Shu, Qunzhi Zhu, Ke Xiao, Yanbing Hou, Haibo Ma, Jing Ma, Xiao Sun
Software Mentions: 5
Published: about 5 years ago

10.3390/cancers13163975

Context-Specific Efficacy of Apalutamide Therapy in Preclinical Models of Pten-Deficient Prostate Cancer
Cited by: 2
Author(s): Marco A. De Velasco, Yurie Kura, Naomi Ando, Noriko Sako, Eri Banno, Kazutoshi Fujita, Masahiro Nozawa, Kazuhiro Yoshimura, Kazuko Sakai, Kazuhiro Yoshikawa, Kazuto Nishio, Hirotsugu Uemura
Software Mentions: 5
Published: over 3 years ago

10.3390/biology10030223

Asparagopsis armata Exudate Cocktail: The Quest for the Mechanisms of Toxic Action of an Invasive Seaweed on Marine Invertebrates
Cited by: 7
Author(s): Carla O. Silva, Tiago Simões, Rafael Félix, Amadeu M.V.M. Soares, Carlos Barata, Sara C. Novais, Marco F.L. Lemos
Software Mentions: 5
Published: over 3 years ago

10.1007/s00125-021-05485-5

Comparison between data-driven clusters and models based on clinical features to predict outcomes in type 2 diabetes: nationwide observational study
Cited by: 15
Author(s): Moa Lugner, Soffia Guðbjörnsdóttir, Naveed Sattar, Ann‐Marie Svensson, Mervete Miftaraj, Katarina Eeg‐Olofsson, Björn Eliasson, Stefan Franzén
Software Mentions: 5
Published: over 3 years ago

10.3389/fmolb.2021.686803

Phenotypic and Functional Analyses of B7S1 in Ovarian Cancer
Cited by: 1
Author(s): Dongli Cai, Fang Wang, Changgang Wang, Liping Jin
Software Mentions: 4
Published: over 3 years ago

10.3389/fonc.2021.636632

Long Noncoding RNA NONHSAT079852.2 Contributes to GBM Recurrence by Functioning as a ceRNA for has-mir-10401-3p to Facilitate HSPA1A Upregulation
Cited by: 3
Author(s): Ningning Zhao, Jiajie Zhang, Lili Zhao, Xiaoni Fu, Qian Zhao, Min Chao, Haiyan Cao, Yang Jiao, Yibo Hu, Chao Chen, Liang Wang, Huijuan Wang
Software Mentions: 4
Published: over 3 years ago

10.3390/plants10020225

Incorporating Drought and Submergence Tolerance QTL in Rice (Oryza sativa L.)—The Effects under Reproductive Stage Drought and Vegetative Stage Submergence Stresses
Cited by: 11
Author(s): Asmuni Mohd Ikmal, Abd Aziz Shamsudin Noraziyah, R. Wickneswari
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12862-016-0592-5

Age-related association of venom gene expression and diet of predatory gastropods
Cited by: 16
Author(s): Dan Chang, Thomas F. Duda
Software Mentions: 4
Published: almost 9 years ago

10.3389/fmicb.2019.00945

Freezing Tolerance of Thermophilic Bacterial Endospores in Marine Sediments
Cited by: 12
Author(s): Margaret Cramm, Anirban Chakraborty, Carmen Li, S. Emil Ruff, Bo Barker Jørgensen, Casey R.J. Hubert
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0135731

A Dissolved Oxygen Threshold for Shifts in Bacterial Community Structure in a Seasonally Hypoxic Estuary
Cited by: 71
Author(s): Rachel L. Spietz, Cheryl M. Williams, Gabrielle Rocap, M. Claire Horner-Devine
Software Mentions: 4
Published: over 9 years ago

10.1002/1878-0261.12029

T-cell immunoglobulin mucin 3 blockade drives an antitumor immune response in head and neck cancer
Cited by: 61
Author(s): Jian-Feng Liu, Si‐Rui Ma, Liang Mao, Lin‐Lin Bu, Guang‐Tao Yu, Yicun Li, Cong-Fa Huang, Wei‐Wei Deng, Ashok B. Kulkarni, Wenfeng Zhang, Zhi‐Jun Sun
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0206317

Proteomic analysis of Lactobacillus casei GCRL163 cell-free extracts reveals a SecB homolog and other biomarkers of prolonged heat stress
Cited by: 11
Author(s): Kayode T. Adu, Richard Wilson, David S. Nichols, Anthony L. Baker, John P. Bowman, ML Britz
Software Mentions: 4
Published: about 6 years ago

10.3389/fimmu.2018.02065

Inflammatory Endotypes and Microbial Associations in Chronic Rhinosinusitis
Cited by: 41
Author(s): Michael Hoggard, Sharon Waldvogel-Thurlow, Melissa Zoing, Kevin Chang, Fiona J. Radcliff, Brett Wagner Mackenzie, Kristi Biswas, Richard Douglas, Michael W. Taylor
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-017-03871-x

Analysis of survival and hatching transcriptomes from potato cyst nematodes, Globodera rostochiensis and G. pallida
Cited by: 21
Author(s): Marc‐Olivier Duceppe, Joël Lafond-Lapalme, Juan E. Palomares-Rius, Michaël Sabeh, Vivian C. Blok, Peter Moffett, Benjamin Mimee
Software Mentions: 4
Published: over 7 years ago

10.5194/aab-64-187-2021

Herd clustering strategies and corresponding genetic evaluations based on social–ecological characteristics for a local endangered cattle breed
Cited by: 1
Author(s): Jonas Herold, Kerstin Brügemann, Sven König
Software Mentions: 4
Published: over 3 years ago

10.3389/fcimb.2021.573923

Impact of the Gut Microbiome on the Progression of Hepatitis B Virus Related Acute-on-Chronic Liver Failure
Cited by: 6
Author(s): Xuebing Yao, Haiping Yu, Guoyin Fan, Haihong Xiang, Li‐Hong Long, Hui Xu, Zhiguo Wu, Mingfa Chen, Wen-Na Xi, Gao Z, Cuiyun Liu, Wenlan Gong, Aoyu Yang, Ke Sun, Rongyan Yu, Junrong Liang, Baogang Xie, Shihui Sun
Software Mentions: 4
Published: over 3 years ago

10.1186/s13321-019-0405-0

The rcdk and cluster R packages applied to drug candidate selection
Cited by: 24
Author(s): Adrian Voicu, Narcis Duţeanu, Mirela Voicu, Daliborca Vlad, Victor Dumitraşcu
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0212400

Capturing the diversity of working age life-courses: A European perspective on cohorts born before 1945
Cited by: 13
Author(s): Kathrin Komp-Leukkunen
Software Mentions: 4
Published: almost 6 years ago