Ecosyste.ms: Papers

10.1186/s12936-021-03624-2

Development of a new barcode-based, multiplex-PCR, next-generation-sequencing assay and data processing and analytical pipeline for multiplicity of infection detection of Plasmodium falciparum
Cited by: 2
Author(s): Rebecca Mitchell, Zhansong Zhou, Mili Sheth, Sheila B. Sergent, Michael Frace, Vishal Nayak, Bin Hu, John E. Gimnig, Feiko ter Kuile, Kim A. Lindblade, Laurence Slutsker, Mary J. Hamel, Meghna Desai, Kephas Otieno, Simon Kariuki, Ýmir Vigfússon, Ya Ping Shi
Software Mentions: 5
Published: almost 4 years ago

10.3390/metabo11090638

Metabolite Ratios as Quality Indicators for Pre-Analytical Variation in Serum and EDTA Plasma
Cited by: 6
Author(s): Sven Heiling, Nadine Knutti, Franziska Scherr, Jörg Geiger, Juliane Weikert, Michael Rose, Roland Jahns, Uta Ceglarek, André Scherag, Michael Kiehntopf
Software Mentions: 5
Published: about 3 years ago

10.1099/mgen.0.000366

AB_SA: Accessory genes-Based Source Attribution – tracing the source of Salmonella enterica Typhimurium environmental strains
Cited by: 5
Author(s): Laurent Guillier, Michèle Gourmelon, Solen Lozach, Sabrina Cadel-Six, Marie-Léone Vignaud, Nanna Sophia Mucha Munck, Tine Hald, Federica Di Palma
Software Mentions: 5
Published: over 4 years ago

10.3390/microorganisms8111713

Genetic Variation and Preliminary Indications of Divergent Niche Adaptation in Cryptic Clade II of Escherichia
Cited by: 3
Author(s): Zhi Yong Shen, Xiu Pei Koh, Yan Yu, S. S. Lau
Software Mentions: 5
Published: about 4 years ago

10.3390/molecules26051357

The Influence of Smoking Status on Exhaled Breath Profiles in Asthma and COPD Patients
Cited by: 6
Author(s): Stefania Principe, Job J.M.H. van Bragt, Cristina Longo, Rob de Vries, Peter J. Sterk, Nicola Scichilone, Susanne Vijverberg, Anke‐Hilse Maitland‐van der Zee
Software Mentions: 5
Published: over 3 years ago

10.3390/molecules26061789

Needle Trap Device-GC-MS for Characterization of Lung Diseases Based on Breath VOC Profiles
Cited by: 14
Author(s): Fernanda Monedeiro, Maciej Monedeiro-Milanowski, Ileana-Andreea Raţiu, Beata Brożek, Tomasz Ligor, Bogusław Buszewski
Software Mentions: 5
Published: over 3 years ago

10.1002/1878-0261.12902

A novel prognostic mRNA/miRNA signature for esophageal cancer and its immune landscape in cancer progression
Cited by: 35
Author(s): Yue Zhao, Li Xu, Xinyu Wang, Shuai Niu, Hezhong Chen, Chunguang Li
Software Mentions: 5
Published: almost 4 years ago

10.3390/v12101158

Identifying Spanish Areas at More Risk of Monthly BTV Transmission with a Basic Reproduction Number Approach
Cited by: 1
Author(s): Cecilia Aguilar-Vega, Jaime Bosch, Eduardo Fernández-Carrión, Javier Lucientes, José Manuel Sánchez‐Vizcaíno
Software Mentions: 5
Published: about 4 years ago

10.1186/s13071-017-2501-1

Analysis of near infrared spectra for age-grading of wild populations of Anopheles gambiae
Cited by: 32
Author(s): Benjamin J Krajacich, Jacob I. Meyers, Haoués Alout, Roch K. Dabiré, Floyd E. Dowell, Brian D. Foy
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj.6481

Mat thickness associated with<i>Didymosphenia geminata</i>and<i>Cymbella</i>spp. in the southern rivers of Chile
Cited by: 1
Author(s): Daniel Zamorano, Matías Peredo-Parada, Diana J. Lillo, Jorge Parodí, Carolina A. Díaz
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.1979

Origin of aromatase inhibitory activity via proteochemometric modeling
Cited by: 16
Author(s): Saw Simeon, Ola Spjuth, Maris Lapins, Sunanta Nabu, Nuttapat Anuwongcharoen, Virapong Prachayasittikul, Jarl E. S. Wikberg, Chanin Nantasenamat
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.8286

Determining hypertensive patients’ beliefs towards medication and associations with medication adherence using machine learning methods
Cited by: 14
Author(s): Firdaus Aziz, Sorayya Malek, Adliah Mhd Ali, M. Wong, Mogeeb A. A. Mosleh, Pozi Milow
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0197386

A bioavailable strontium isoscape for Western Europe: A machine learning approach
Cited by: 105
Author(s): Clément P. Bataille, Isabella C.C. von Holstein, Jason E. Laffoon, Malte Willmes, Xiao Ming Liu, Gareth R. Davies
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0229881

Impacts of climate change on agro-climatic suitability of major food crops in Ghana
Cited by: 38
Author(s): Abel Chemura, Bernhard Schauberger, Christoph Gornott
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0251963

Factors indicating intention to vaccinate with a COVID-19 vaccine among older U.S. adults
Cited by: 55
Author(s): Janeta Nikolovski, Martin Koldijk, Gerrit Jan Weverling, John A. Spertus, Mintu P. Turakhia, Leslie A. Saxon, C. Michael Gibson, John Whang, Troy C. Sarich, Robert A. Zambon, Nnamdi Ezeanochie, Jennifer Turgiss, Robyn Jones, Jeff Stoddard, Paul R. Burton, Ann Marie Návar
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0252025

Prediction of preterm birth in nulliparous women using logistic regression and machine learning
Cited by: 14
Author(s): Reza Arabi Belaghi, Joseph Beyene, Sarah D. McDonald
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0209018

Mucopolysaccharidosis type II detection by Naïve Bayes Classifier: An example of patient classification for a rare disease using electronic medical records from the Canadian Primary Care Sentinel Surveillance Network
Cited by: 19
Author(s): Behrouz Ehsani-Moghaddam, John Queenan, Jennifer MacKenzie, Richard Birtwhistle
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0231999

The genomic landscape of metastatic breast cancer: Insights from 11,000 tumors
Cited by: 28
Author(s): Jacob Rinaldi, Ethan S. Sokol, Ryan J. Hartmaier, Sally E. Trabucco, Garrett M. Frampton, Michael E. Goldberg, Lee A. Albacker, Anneleen Daemen, Gerard Manning
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0049475

Characteristics and Predictive Value of Blood Transcriptome Signature in Males with Autism Spectrum Disorders
Cited by: 139
Author(s): Sek Won Kong, Christin Collins, Yuko Shimizu‐Motohashi, Ingrid A. Holm, Malcolm Campbell, In Hee Lee, Stephanie J. Brewster, Ellen Hanson, Heather K. Harris, Kathryn R. Lowe, Adrianna Saada, Andrea L. Mora, Kimberly A. Madison, Rachel Hundley, Jessica Egan, Jill McCarthy, Alal Eran, Michal Galdzicki, Leonard Rappaport, Louis M. Kunkel, Isaac S. Kohane
Software Mentions: 5
Published: almost 12 years ago

10.1371/journal.pone.0236631

Citizen science for predicting spatio-temporal patterns in seabird abundance during migration
Cited by: 5
Author(s): Beatriz Martín, Alejandro Onrubia, Julio González-Arias, Juan Antonio Vicente-Virseda
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0196987

Diversity and potential activity patterns of planktonic eukaryotic microbes in a mesoeutrophic coastal area (eastern English Channel)
Cited by: 11
Author(s): Sara Rachik, Urania Christaki, Luen Luen Li, Savvas Genitsaris, Elsa Breton, Sébastien Monchy
Software Mentions: 5
Published: over 6 years ago

10.3390/cancers13174317

Comprehensively Exploring the Mutational Landscape and Patterns of Genomic Evolution in Hypermutated Cancers
Cited by: 2
Author(s): Peng-Chan Lin, Yu-Min Yeh, Hui‐Ping Hsu, Ren‐Hao Chan, Bo Lin, Po-Chuan Chen, Chien-Chang Pan, Keng-Fu Hsu, Jenn-Ren Hsiao, Yan‐Shen Shan, Meng-Ru Shen
Software Mentions: 5
Published: about 3 years ago

10.3390/cancers13112592

Identification of Candidate Protein Biomarkers for CIN2+ Lesions from Self-Sampled, Dried Cervico–Vaginal Fluid Using LC-MS/MS
Cited by: 6
Author(s): Ariadna Lara Gutiérrez, Julia Hedlund Lindberg, Ganna Shevchenko, Inger Gustavsson, Jonas Bergquist, Ulf Gyllensten, Stefan Enroth
Software Mentions: 5
Published: over 3 years ago

10.1038/s42003-020-01601-0

High throughput estimates of Wolbachia, Zika and chikungunya infection in Aedes aegypti by near-infrared spectroscopy to improve arbovirus surveillance
Cited by: 10
Author(s): Lílha Maria Barbosa dos Santos, Mathijs Mutsaers, Gabriela A. Garcia, Mariana Rocha David, Márcio G. Pavan, Martha Thieme Petersen, Jessica Corrêa-Antônio, Dinair Couto-Lima, Louis Maes, Floyd E. Dowell, Anton Lord, Maggy T. Sikulu-Lord, Rafael Maciel-de-Freitas
Software Mentions: 5
Published: almost 4 years ago

10.1038/s42003-019-0464-9

High throughput proteomics identifies a high-accuracy 11 plasma protein biomarker signature for ovarian cancer
Cited by: 73
Author(s): Stefan Enroth, Malin Berggrund, Maria Lycke, John Broberg, Martin Lundberg, Erika Assarsson, Matts Olovsson, Karin Stålberg, Karin Sundfeldt, Ulf Gyllensten
Software Mentions: 5
Published: over 5 years ago

10.1016/j.csbj.2019.04.009

Accounting for biological variation with linear mixed-effects modelling improves the quality of clinical metabolomics data
Cited by: 26
Author(s): Kwanjeera Wanichthanarak, Saharuetai Jeamsripong, Natapol Pornputtapong, Sakda Khoomrung
Software Mentions: 5
Published: almost 6 years ago

10.3390/diagnostics11071299

Predicting Hemodynamic Failure Development in PICU Using Machine Learning Techniques
Cited by: 4
Author(s): Rosanna Irene Comoretto, Danila Azzolina, Angela Amigoni, Giorgia Stoppa, Federica Todino, Andrea Wolfler, Darío Gregori
Software Mentions: 5
Published: over 3 years ago

10.1016/j.ebiom.2019.06.041

Metabolomics in plasma of Malawian children 7 years after surviving severe acute malnutrition: “ChroSAM” a cohort study
Cited by: 14
Author(s): Céline Bourdon, Natasha Lelijveld, Debbie Thompson, Prasad S. Dalvi, Gerard Bryan Gonzales, Dominic Wang, Misagh Alipour, Eytan Wine, Emmanuel Chimwezi, Jonathan C. K. Wells, Marko Kerac, Robert Bandsma, Moffat Nyirenda
Software Mentions: 5
Published: over 5 years ago

10.3389/fcell.2021.712196

A Novel Classifier Based on Urinary Proteomics for Distinguishing Between Benign and Malignant Ovarian Tumors
Cited by: 11
Author(s): Maowei Ni, Jie Zhou, Zhihui Zhu, Jingtao Yuan, Wei‐Jiang Gong, Jun Zhu, Zhong Zheng, Huajun Zhao
Software Mentions: 5
Published: about 3 years ago

10.3389/fcell.2021.664415

Accurate Prediction of Prognosis by Integrating Clinical and Molecular Characteristics in Colon Cancer
Cited by: 4
Author(s): Liru Wang, Mu Chun Su, Mengyan Zhang, Hongyan Zhao, Hongli Wang, Jie Xing, Chang-Jun Guo, Dianshuang Zhou, Wenhui Xue, Haibo Lu, Yan Zhang
Software Mentions: 5
Published: over 3 years ago

10.3389/fendo.2020.00023

Higher Blood Urea Nitrogen and Urinary Calcium: New Risk Factors for Diabetes Mellitus in Primary Aldosteronism Patients
Cited by: 12
Author(s): Yu Liu, Liang Zhou, Zhenghuan Liu, Yucheng Ma, Lede Lin, Ye Zhu, Kunjie Wang, Hong Li
Software Mentions: 5
Published: almost 5 years ago

10.3389/fimmu.2020.588405

Impact of Persistent Anemia on Systemic Inflammation and Tuberculosis Outcomes in Persons Living With HIV
Cited by: 16
Author(s): Fernanda O. Demitto, Mariana Araújo-Pereira, Carolina AranaStanis Schmaltz, Flávia Marinho Sant’Anna, María B. Arriaga, Bruno B. Andrade, Valeria Rolla
Software Mentions: 5
Published: about 4 years ago

10.3389/fneur.2019.00745

A Risk Classification System With Five-Gene for Survival Prediction of Glioblastoma Patients
Cited by: 26
Author(s): Yulin Wang, Xin Liu, Gefei Guan, Wenjin Zhao, Minghua Zhuang
Software Mentions: 5
Published: over 5 years ago

10.3389/fnins.2021.645998

Identification of Diagnostic Markers for Major Depressive Disorder Using Machine Learning Methods
Cited by: 12
Author(s): Zhao Shu, Bao Zhaorigetu, Xinyi Zhao, Maochao Xu, Ming D. Li, Zhongli Yang
Software Mentions: 5
Published: over 3 years ago

10.3389/fnins.2020.00516

Machine Learning Representation of Loss of Eye Regularity in a Drosophila Neurodegenerative Model
Cited by: 6
Author(s): Sergio Díez-Hermano, Marı́a D. Ganfornina, Esteban Vegas, Diego Sánchez
Software Mentions: 5
Published: over 4 years ago

10.3389/fonc.2019.01050

Pretreatment Prediction of Adaptive Radiation Therapy Eligibility Using MRI-Based Radiomics for Advanced Nasopharyngeal Carcinoma Patients
Cited by: 37
Author(s): Ting Yu, Sai Kit Lam, Lok Hang To, Ka Yan Tse, Nong Yi Cheng, Yeuk Nam Fan, Cheuk Lai Lo, Ka Wa Or, Mable Chan, Ka Ching Hui, F. Chan, Wai Ming Hui, Lo Kin Ngai, Francis Kar ho Lee, Kwok Hung Au, Celia Wai yi Yip, Yong Zhang, Jing Cai
Software Mentions: 5
Published: about 5 years ago

10.3389/fpls.2021.706822

Influence of the Environment on the Distribution and Quality of Gentiana dahurica Fisch.
Cited by: 8
Author(s): Mingxu Zhang, Dong Jiang, Min Yang, Tian Ma, Fang Ding, Mengmeng Hao, Yuan Chen, Chunhong Zhang, Xiao-Bo Zhang, Min-Hui Li
Software Mentions: 5
Published: about 3 years ago

10.3389/fsurg.2021.659422

Development and Validation a Nomogram for Predicting Overall Survival in Patients With Intrahepatic Cholangiocarcinoma
Cited by: 11
Author(s): Yuan Chen, Zhigang Hu, Kai Wang, Shubing Zou
Software Mentions: 5
Published: over 3 years ago

10.1186/s13059-018-1602-2

RNA G-quadruplexes at upstream open reading frames cause DHX36- and DHX9-dependent translation of human mRNAs
Cited by: 107
Author(s): Pierre Murat, Giovanni Marsico, Barbara Herdy, Avazeh T. Ghanbarian, Guillem Portella, Shankar Balasubramanian
Software Mentions: 5
Published: almost 6 years ago

10.1186/s13073-021-00956-1

De novo transcriptomic subtyping of colorectal cancer liver metastases in the context of tumor heterogeneity
Cited by: 8
Author(s): Seyed H. Moosavi, Peter W. Eide, Ina A. Eilertsen, Tuva H. Brunsell, Kaja Christine Graue Berg, Bård I. Røsok, Kristoffer Watten Brudvik, Bjørn Atle Bjørnbeth, Marianne Grønlie Guren, Arild Nesbakken, Ragnhild A. Lothe, Anita Sveen
Software Mentions: 5
Published: about 3 years ago

10.1093/gigascience/giz042

Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks
Cited by: 52
Author(s): Pajau Vangay, Benjamin Hillmann, Dan Knights
Software Mentions: 5
Published: over 5 years ago

10.3390/healthcare9020138

Distal Symmetric Polyneuropathy Identification in Type 2 Diabetes Subjects: A Random Forest Approach
Cited by: 9
Author(s): Valeria Maeda-Gutiérrez, Carlos E. Galván-Tejada, Miguel Cruz, Adán Valladares–Salgado, Jorge I. Galván-Tejada, Hamurabi Gamboa-Rosales, Alejandra García-Hernández, Huizilopoztli Luna-García, Irma González-Curiel, Mónica Martínez-Acuña
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13027-021-00365-4

Immunophenotypic characterization of TCR γδ T cells and MAIT cells in HIV-infected individuals developing Hodgkin’s lymphoma
Cited by: 2
Author(s): Christina K. S. Muller, Julian Spagnuolo, Annette Audigé, Andrew Chancellor, Doris Russenberger, Alexandra U. Scherrer, Matthias Hoffmann, Roger D. Kouyos, Manuel Battegay, Gennaro De Libero, Roberto F. Speck
Software Mentions: 5
Published: over 3 years ago

10.3390/insects12020090

Pine Looper Bupalus piniaria (L.) Outbreaks Reconstruction: A Case Study for Southern Siberia
Cited by: 2
Author(s): Denis A. Demidko, О. В. Трефилова, Sergey Kulakov, Pavel V. Mikhaylov
Software Mentions: 5
Published: almost 4 years ago

10.1007/s10815-021-02224-y

Can methods of artificial intelligence aid in optimizing patient selection in patients undergoing intrauterine inseminations?
Cited by: 2
Author(s): Nejc Kozar, Vilma Kovač, Milan Reljič
Software Mentions: 5
Published: over 3 years ago

10.1186/s13326-018-0189-6

Using predicate and provenance information from a knowledge graph for drug efficacy screening
Cited by: 16
Author(s): Wytze J. Vlietstra, Rein Vos, Anneke M. Sijbers, Erik M. van Mulligen, Jan A. Kors
Software Mentions: 5
Published: about 6 years ago

10.7150/jca.47698

Mass Spectrometry Imaging Differentiates Chromophobe Renal Cell Carcinoma and Renal Oncocytoma with High Accuracy
Cited by: 7
Author(s): Mark Kriegsmann, Rita Casadonte, Nadine Maurer, Christine Stoehr, Franziska Erlmeier, Holger Moch, Kerstin Junker, Christiane Zgorzelski, Wilko Weichert, Kristina Schwamborn, Sören‐Oliver Deininger, Matthias M. Gaida, Gunhild Mechtersheimer, Albrecht Stenzinger, Peter Schirmacher, Arndt Hartmann, Joerg Kriegsmann, Katharina Kriegsmann
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13321-019-0384-1

Open-source QSAR models for pKa prediction using multiple machine learning approaches
Cited by: 82
Author(s): Kamel Mansouri, Neal F. Cariello, Alexandru Korotcov, Valery Tkachenko, Christopher M. Grulke, Catherine S. Sprankle, David Allen, Warren Casey, Nicole Kleinstreuer, Antony J. Williams
Software Mentions: 5
Published: about 5 years ago

10.1186/s13321-020-00421-y

ADMET evaluation in drug discovery. 20. Prediction of breast cancer resistance protein inhibition through machine learning
Cited by: 38
Author(s): Dejun Jiang, Tailong Lei, Zhe Wang, Chao Shen, Dong‐Sheng Cao, Tingjun Hou
Software Mentions: 5
Published: over 4 years ago

10.1155/2015/623619

Combined Methods for Diabetic Retinopathy Screening, Using Retina Photographs and Tear Fluid Proteomics Biomarkers
Cited by: 34
Author(s): Zsuzsa Török, Tünde Pető, Éva Csősz, Edit Tukacs, Ágnes Molnár, András Berta, József Tözsér, András Hajdú, Valéria Nagy, Bálint Domokos, Adrienne Csutak
Software Mentions: 5
Published: almost 10 years ago

10.1038/s41597-019-0337-6

Machine learning for the detection of early immunological markers as predictors of multi-organ dysfunction
Cited by: 16
Author(s): Laura Bravo-Merodio, Animesh Acharjee, Jon Hazeldine, Conor Bentley, Mark Foster, Georgios V. Gkoutos, Janet M. Lord
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-017-15137-7

Development of multivariable models to predict change in Body Mass Index within a clinical trial population of psychotic individuals
Cited by: 13
Author(s): Rebecca Harrison, Fiona Gaughran, Robin M. Murray, Sang Hyuck Lee, Jose Paya Cano, David Dempster, Charles Curtis, Danai Dima, Hamel Patel, Simone de Jong, Gerome Breen
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-017-18321-x

Clay content and pH: soil characteristic associations with the persistent presence of chronic wasting disease in northern Illinois
Cited by: 16
Author(s): Sheena J. Dorak, Michelle L. Green, Michelle M. Wander, Marilyn O. Ruiz, Michael Buhnerkempe, Ting Tian, J. Novakofski, Nohra E. Mateus‐Pinilla
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-018-30236-9

Machine learning for fast identification of bacteraemia in SIRS patients treated on standard care wards: a cohort study
Cited by: 30
Author(s): Franz Ratzinger, Helmuth Haslacher, Thomas Perkmann, Matilde Pinzan, Philip Anner, Athanasios Makristathis, Heinz Burgmann, Georg Heinze, Georg Dorffner
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-018-30778-y

Predators Show Seasonal Predilections for Model Clay Spiders in an Urban Environment
Cited by: 9
Author(s): Leanda Denise Mason, Grant Wardell‐Johnson, Sarah Luxton, Philip W. Bateman
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-019-53451-4

Machine Learning Approach for Prescriptive Plant Breeding
Cited by: 51
Author(s): Kyle A. Parmley, R. A. Higgins, Baskar Ganapathysubramanian, Soumik Sarkar, Asheesh K. Singh
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-63919-3

Increased Prediction Accuracy Using Combined Genomic Information and Physiological Traits in A Soft Wheat Panel Evaluated in Multi-Environments
Cited by: 12
Author(s): Jia Guo, Sumit Pradhan, Dipendra Shahi, Jahangir Khan, Jordan C. McBreen, Guihua Bai, J. Paul Murphy, Ali Babar
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-020-64829-0

Variable selection for inferential models with relatively high-dimensional data: Between method heterogeneity and covariate stability as adjuncts to robust selection
Cited by: 15
Author(s): Eliana Martins Lima, Peter N. Davies, Jasmeet Kaler, Fiona Lovatt, Martin J. Green
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-020-71176-7

Chemical signatures of femoral pore secretions in two syntopic but reproductively isolated species of Galápagos land iguanas (Conolophus marthae and C. subcristatus)
Cited by: 4
Author(s): Giuliano Colosimo, Gabriele Di Marco, Alessia D’Agostino, Angelo Gismondi, Carlos Vera, Glenn P. Gerber, Michele Scardi, Antonella Canini, Gabriele Gentile
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-020-77846-w

Differential proteomic analysis by SWATH-MS unravels the most dominant mechanisms underlying yeast adaptation to non-optimal temperatures under anaerobic conditions
Cited by: 20
Author(s): Tânia Pinheiro, Ka Ying Florence Lip, Estéfani García‐Ríos, Amparo Querol, J. A. Teixeira, Walter van Gulik, José Manuel Guillamón, Lucı́lia Domingues
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-021-90641-5

Bioelectrical impedance analysis versus quantitative computer tomography and anthropometry for the assessment of body composition parameters in China
Cited by: 6
Author(s): Qian Qin, Yang Yang, Jingfeng Chen, Yaojun Jiang, Ang Li, Meng Huang, Yihan Dong, Shoujun Wang, Shuzhe Ding
Software Mentions: 5
Published: over 3 years ago

10.3390/s21092899

Non-Destructive Detection Pilot Study of Vegetable Organic Residues Using VNIR Hyperspectral Imaging and Deep Learning Techniques
Cited by: 6
Author(s): Yong Weon Seo, Giyoung Kim, Jongguk Lim, Ahyeong Lee, Balgeum Kim, Jae-Kyung Jang, Changyeun Mo, Moon S. Kim
Software Mentions: 5
Published: over 3 years ago

10.1128/mBio.02882-20

Comprehensive Genomic Investigation of Adaptive Mutations Driving the Low-Level Oxacillin Resistance Phenotype in Staphylococcus aureus
Cited by: 23
Author(s): Stefano Giulieri, Romain Guérillot, Jason C Kwong, Ian R. Monk, Ashleigh S Hayes, Diane Daniel, Sarah L. Baines, Norelle L Sherry, Natasha E Holmes, Peter Ward, Wei Gao, Torsten Seemann, Timothy P. Stinear, Benjamin P Howden
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13620-021-00182-6

Prediction of lameness using automatically recorded activity, behavior and production data in post-parturient Irish dairy cows
Cited by: 9
Author(s): G. M. Borghart, Luke O’Grady, Joris R Somers
Software Mentions: 5
Published: almost 4 years ago

10.3390/ijerph17186449

Comparison of Support Vector Machine, Naïve Bayes and Logistic Regression for Assessing the Necessity for Coronary Angiography
Cited by: 18
Author(s): Parastoo Golpour, Majid Ghayour‐Mobarhan, Azadeh Saki, Habibollah Esmaily, Ali Taghipour, Mohammad Tajfard, Hamideh Ghazizadeh, Mohsen Moohebati, Gordon A. Ferns
Software Mentions: 5
Published: about 4 years ago

10.1186/s40560-021-00538-8

Predictors of failure with high-flow nasal oxygen therapy in COVID-19 patients with acute respiratory failure: a multicenter observational study
Cited by: 34
Author(s): Ricard Mellado Artigas, Luis Eduardo Mujica, Magda Ruiz, Bruno L. Ferreyro, Federico Angriman, Egoitz Arruti, Antoni Torres, Enric Barbeta, Jesús Villar, Carlos Ferrando
Software Mentions: 5
Published: over 3 years ago

10.3390/ijms21072403

Novel Autoantibody Signatures in Sera of Patients with Pancreatic Cancer, Chronic Pancreatitis and Autoimmune Pancreatitis: A Protein Microarray Profiling Approach
Cited by: 8
Author(s): Sahar Ghassem-Zadeh, Katrin Hufnagel, Andrea S. Bauer, Jean Louis Frossard, Masaru Yoshida, Hiromu Kutsumi, Hans Acha‐Orbea, Matthias Neulinger-Muñoz, Johannes A Vey, Christoph Eckert, Oliver Strobel, Jörg D. Hoheisel, Klaus Felix
Software Mentions: 5
Published: over 4 years ago

10.3390/ijms22168954

Multiomic Approaches to Uncover the Complexities of Dystrophin-Associated Cardiomyopathy
Cited by: 3
Author(s): Aoife Gowran, Marcos Leal Brioschi, Davide Rovina, Mattia Chiesa, Luca Piacentini, Sara Mallia, Cristina Banfi, Giulio Pompilio, Rosaria Santoro
Software Mentions: 5
Published: over 3 years ago

10.18632/oncotarget.23423

Signature of survival: a 18F-FDG PET based whole-liver radiomic analysis predicts survival after 90Y-TARE for hepatocellular carcinoma
Cited by: 39
Author(s): Paul Blanc-Durand, Axel Van Der Gucht, Mario Jreige, Marie Nicod Lalonde, Marina Silva-Monteiro, John O. Prior, Alban Denys, Adrien Depeursinge, Niklaus Schaefer
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41597-021-00891-1

Daily PM2.5 concentration estimates by county, ZIP code, and census tract in 11 western states 2008–2018
Cited by: 15
Author(s): Colleen E. Reid, Ellen M. Considine, M. M. Maestas, Gina Li
Software Mentions: 4
Published: over 3 years ago

10.1038/srep18948

Scalable topographies to support proliferation and Oct4 expression by human induced pluripotent stem cells
Cited by: 55
Author(s): Andreas S. Reimer, Aliaksei Vasilevich, Frits Hulshof, Priyalakshmi Viswanathan, Clemens A. van Blitterswijk, Jan de Boer, Fiona M. Watt
Software Mentions: 4
Published: almost 9 years ago

10.3390/ijms11093413

Prediction of PKCθ Inhibitory Activity Using the Random Forest Algorithm
Cited by: 15
Author(s): Hao Ming, Yan Li, Yonghua Wang, Shuwei Zhang
Software Mentions: 4
Published: about 14 years ago

10.1371/journal.pone.0180221

Using machine learning and surface reconstruction to accurately differentiate different trajectories of mood and energy dysregulation in youth
Cited by: 0
Author(s): Amelia Versace, Vinod Kumar Sharma, Michele Bertocci, Genna Bebko, Satish Iyengar, Amanda Dwojak, Lisa Bonar, Susan B. Perlman, Claudiu Schirda, Michael J. Travis, Mary Kay Gill, Vaibhav A. Diwadkar, Jeffrey L. Sunshine, Scott K. Holland, Robert A. Kowatch, Boris Birmaher, David Axelson, Thomas Frazier, L. Eugene Arnold, Mary A. Fristad, Eric A. Youngstrom, Sarah M. Horwitz, Robert L. Findling, Mary L. Phillips
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-017-02425-5

Associations between radiologist-defined semantic and automatically computed radiomic features in non-small cell lung cancer
Cited by: 78
Author(s): Stephen Yip, Ying Liu, Chintan Parmar, Qian Li, Liu Shi-chang, Fangyuan Qu, Zhaoxiang Ye, Robert J. Gillies, Hugo J.W.L. Aerts
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pntd.0002880

Helminth Colonization Is Associated with Increased Diversity of the Gut Microbiota
Cited by: 274
Author(s): Soo Ching Lee, Mei Tang, Yvonne A. L. Lim, Seow Huey Choy, Zachary Kurtz, Laura M. Cox, Uma Mahesh Gundra, Ilseung Cho, Richard Bonneau, Martin J. Blaser, Kek Heng Chua, P’ng Loke
Software Mentions: 4
Published: over 10 years ago

10.1038/hortres.2016.2

A next-generation marker genotyping platform (AmpSeq) in heterozygous crops: a case study for marker-assisted selection in grapevine
Cited by: 66
Author(s): Shanshan Yang, Jonathan Fresnedo-Ramírez, Minghui Wang, Linda M. Cote, Peter A. Schweitzer, Paola Barba, Elizabeth M. Takacs, Matthew D. Clark, James J. Luby, David C. Manns, Gavin L. Sacks, Anna Katharine Mansfield, Jason P. Londo, Anne Fennell, David M. Gadoury, Bruce I. Reisch, Lance Cadle‐Davidson, Qi Sun
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-017-10869-y

Functional prediction of long non-coding RNAs in ovarian cancer-associated fibroblasts indicate a potential role in metastasis
Cited by: 33
Author(s): Fatemeh Vafaee, Emily K. Colvin, Samuel C. Mok, Viive M. Howell, Goli Samimi
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0198884

Detecting opinion spams through supervised boosting approach
Cited by: 20
Author(s): Mohamad Hazim, Nor Badrul Anuar, Mohd Faizal Ab Razak, Nor Aniza Abdullah
Software Mentions: 4
Published: over 6 years ago

10.3390/ijerph14040396

Modeling Fire Occurrence at the City Scale: A Comparison between Geographically Weighted Regression and Global Linear Regression
Cited by: 13
Author(s): Chao Song, Mei‐Po Kwan, Jianqin Zhu
Software Mentions: 4
Published: over 7 years ago

10.1186/s12913-020-05806-1

Limited predictive value of admission time in clinical psychiatry
Cited by: 0
Author(s): Peter Kreuzer, Stefan Günther, Jorge Simões, Michael Ziereis, Berthold Langguth
Software Mentions: 4
Published: about 4 years ago

10.3389/fonc.2020.567160

Value of 18F-FDG PET/CT-Based Radiomics Nomogram to Predict Survival Outcomes and Guide Personalized Targeted Therapy in Lung Adenocarcinoma With EGFR Mutations
Cited by: 10
Author(s): Bin Yang, Han Ji, Jing Zhong, Lifang Ma, Jian Zhong, Hao Dong, Changsheng Zhou, Shaofeng Duan, Chengzhang Zhu, Jiahe Tian, Longjiang Zhang, Rui Wang, Hong Zhu, Guangming Lu
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pmed.1002711

Deep learning for lung cancer prognostication: A retrospective multi-cohort radiomics study
Cited by: 358
Author(s): Ahmed Hosny, Chintan Parmar, Thibaud Coroller, Patrick Großmann, Roman Zeleznik, Avnish Kumar, Johan Bussink, Robert J. Gillies, Raymond H. Mak, Hugo J.W.L. Aerts
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0207840

Improving the calling of non-invasive prenatal testing on 13-/18-/21-trisomy by support vector machine discrimination
Cited by: 13
Author(s): Jianfeng Yang, Xueliang Ding, Weidong Zhu
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1007511

VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning
Cited by: 44
Author(s): Jiwoong Kim, David E. Greenberg, Reed Pifer, Shuang Jiang, Guanghua Xiao, Samuel A. Shelburne, Andrew Y. Koh, Yang Xie, Xiaowei Zhan
Software Mentions: 4
Published: almost 5 years ago

10.18632/oncotarget.9143

Which melanoma patient carries a BRAF-mutation? A comparison of predictive models
Cited by: 11
Author(s): Thomas Eigentler, Zeinab Assi, Jessica C. Hassel, Lucie Heinzerling, Hans Starz, Mark Berneburg, Juergen Bauer, Claus Garbe
Software Mentions: 4
Published: over 8 years ago

10.18632/oncotarget.9721

<i>KCNN4</i>and<i>S100A14</i>act as predictors of recurrence in optimally debulked patients with serous ovarian cancer
Cited by: 26
Author(s): Hongbo Zhao, Ensong Guo, Ting Hu, Qian Sun, Jiankang Wu, Xingguang Lin, Danfeng Luo, Chaoyang Sun, Changyu Wang, Bo Zhou, Na Li, Meng Xia, Hao Lü, Meng Li, Xiaoyan Xu, Junbo Hu, Ding Ma, Gang Chen, Tao Zhu
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-33116-4

Cholesterol is Inefficiently Converted to Cholesteryl Esters in the Blood of Cardiovascular Disease Patients
Cited by: 42
Author(s): Mathias J. Gerl, Winchil L.C. Vaz, Neuza Domingues, Christian Klose, Michał A. Surma, Júlio L. Sampaio, Jorge Almeida, G Rodrigues, Pedro Araújo-Gonçalves, Jorge Ferreira, Cláudia Borbinha, João Pedro Marto, Miguel Viana-Baptista, Kai Simons, Otília V. Vieira
Software Mentions: 4
Published: about 6 years ago

10.1186/s12911-019-0894-9

Automated detection of altered mental status in emergency department clinical notes: a deep learning approach
Cited by: 27
Author(s): Jihad S. Obeid, Erin R. Weeda, Andrew J. Matuskowitz, Kevin Gagnon, Tami L. Crawford, Christine M. Carr, Lewis J. Frey
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-018-36699-0

Physical characteristics not psychological state or trait characteristics predict motion during resting state fMRI
Cited by: 28
Author(s): Hamed Ekhtiari, Rayus Kuplicki, Hung‐Wen Yeh, Martin P. Paulus
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pcbi.1008429

Identifying longevity associated genes by integrating gene expression and curated annotations
Cited by: 5
Author(s): F. William Townes, Kareem Carr, Jeffrey W. Miller
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pcbi.1007467

Evolution of the nonsense-mediated decay pathway is associated with decreased cytolytic immune infiltration
Cited by: 14
Author(s): Boyang Zhao, Justin R. Pritchard
Software Mentions: 4
Published: about 5 years ago

10.3389/fpsyg.2020.01684

The Psychological Impact of the COVID-19 Outbreak on Health Professionals: A Cross-Sectional Study
Cited by: 315
Author(s): Emanuele Maria Giusti, Elisa Pedroli, Guido Edoardo D’Aniello, Chiara Stramba Badiale, Giada Pietrabissa, Chiara Manna, Marco Stramba-Badiale, Giuseppe Riva, Gianluca Castelnuovo, Enrico Molinari
Software Mentions: 4
Published: over 4 years ago

10.1186/s12918-019-0693-z

Identification of Hürthle cell cancers: solving a clinical challenge with genomic sequencing and a trio of machine learning algorithms
Cited by: 22
Author(s): Yangyang Hao, Quan‐Yang Duh, Richard T. Kloos, Joshua E. Babiarz, R. Mack Harrell, S. Thomas Traweek, Su Yeon Kim, Grazyna Fedorowicz, P. Sean Walsh, Peter M. Sadow, Jing Huang, Giulia C. Kennedy
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pcbi.1008397

Integrative analysis of structural variations using short-reads and linked-reads yields highly specific and sensitive predictions
Cited by: 5
Author(s): Riccha Sethi, Julia Powers Becker, Jos de Graaf, Martin Löwer, M Suchan, Uğur Şahin, D. F. Weber
Software Mentions: 4
Published: about 4 years ago

10.3390/e23060763

Assessment of Classification Models and Relevant Features on Nonalcoholic Steatohepatitis Using Random Forest
Cited by: 8
Author(s): Rafael García-Carretero, Roberto Holgado-Cuadrado, Óscar Barquero-Pérez
Software Mentions: 4
Published: over 3 years ago

10.1016/j.jalz.2019.03.007

Inflammatory biomarkers in Alzheimer's disease plasma
Cited by: 118
Author(s): Angharad R. Morgan, Samuel Touchard, Claire Leckey, Caroline O’Hagan, Alejo J. Nevado‐Holgado, Frederik Barkhof, Lars Bertram, Olivier Blin, Isabelle Bos, Valerija Dobričić, Sebastiaan Engelborghs, Giovanni B. Frisoni, Lutz Frölich, Silvey Gabel, Peter Johannsen, Petronella Kettunen, Iwona Kłoszewska, Cristina Legido‐Quigley, Alberto Lleó, Pablo Martínez-Lage, Patrizia Mecocci, Karen Meersmans, José Luís Molinuevo, Gwendoline Peyratout, Julius Popp, Jill C. Richardson, Isabel Sala, Philip Scheltens, Johannes Streffer, Hikka Soininen, Mikel Tainta, Charlotte E. Teunissen, Magda Tsolaki, Rik Vandenberghe, Pieter Jelle Visser, Stephanie J.B. Vos, Lars‐Olof Wahlund, Anders Wallin, Sarah Westwood, Henrik Zetterberg, Simon Lovestone, B. Paul Morgan, Alzheimer’s Disease
Software Mentions: 4
Published: over 5 years ago

10.1192/j.eurpsy.2020.17

Identification of newborns at risk for autism using electronic medical records and machine learning
Cited by: 21
Author(s): Rayees Rahman, Arad Kodesh, Stephen Z. Levine, Sven Sandin, Abraham Reichenberg, Avner Schlessinger
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13040-021-00269-4

Biological knowledge-slanted random forest approach for the classification of calcified aortic valve stenosis
Cited by: 2
Author(s): Érika Cantor, Rodrigo Salas, Harvey Rosas, Sandra Guauque-Olarte
Software Mentions: 4
Published: over 3 years ago

10.1098/rstb.2019.0666

Neurons in primate prefrontal cortex signal valuable social information during natural viewing
Cited by: 4
Author(s): Geoffrey K. Adams, Wei Song Ong, J. M. Pearson, Karli Watson, Michael L. Platt
Software Mentions: 4
Published: almost 4 years ago

10.3389/fpls.2020.603921

Prediction of Biomass and N Fixation of Legume–Grass Mixtures Using Sensor Fusion
Cited by: 17
Author(s): Esther Grüner, Thomas Astor, M. Wachendorf
Software Mentions: 4
Published: almost 4 years ago