Ecosyste.ms: Papers

10.1186/s12864-018-5419-x

Dose-dependent impact of oxytetracycline on the veal calf microbiome and resistome
Cited by: 16
Author(s): Bart J. F. Keijser, Valeria Agamennone, Tim J. van den Broek, Martien P. M. Caspers, Adri van de Braak, Richard Bomers, Mieke Havekes, Eric D. Schoen, Martin van Baak, Daniël Mioch, Lonneke Bomers, R.C. Montijn
Software Mentions: 7
Published: almost 6 years ago

10.2196/16153

Explanatory Model of Dry Eye Disease Using Health and Nutrition Examinations: Machine Learning and Network-Based Factor Analysis From a National Survey
Cited by: 8
Author(s): Sang Min Nam, Thomas A Peterson, Atul J. Butte, Kyoung Yul Seo, Hyun Wook Han
Software Mentions: 7
Published: almost 5 years ago

10.3390/insects11080460

Honeydew Deposition by the Giant Willow Aphid (Tuberolachnus salignus) Affects Soil Biota and Soil Biochemical Properties
Cited by: 7
Author(s): Kyaw Min Tun, Andrea Clavijo McCormick, Trevor Jones, Stanislav Garbuz, Maria A. Minor
Software Mentions: 7
Published: over 4 years ago

10.1186/s40249-019-0612-y

Seasonality modeling of the distribution of Aedes albopictus in China based on climatic and environmental suitability
Cited by: 31
Author(s): Xiao Zheng, Daibin Zhong, Yulan He, Guofa Zhou
Software Mentions: 7
Published: almost 5 years ago

10.1186/s13195-020-00654-x

Identification of potential blood biomarkers for early diagnosis of Alzheimer’s disease through RNA sequencing analysis
Cited by: 44
Author(s): Daichi Shigemizu, Tomohisa Mori, Shintaro Akiyama, Sayuri Higaki, Hiroshi Watanabe, Takashi Sakurai, Shumpei Niida, Kouichi Ozaki
Software Mentions: 7
Published: over 4 years ago

10.1186/s10194-018-0863-1

The role of personality, disability and physical activity in the development of medication-overuse headache: a prospective observational study
Cited by: 15
Author(s): Louise Schlosser Mose, Susanne S. Pedersen, Birgit Debrabant, Rigmor Jensen, Bibi Gram
Software Mentions: 7
Published: over 6 years ago

10.1128/mSystems.00632-19

Early-Stage <i>Staphylococcus aureus</i> Bloodstream Infection Causes Changes in the Concentrations of Lipoproteins and Acute-Phase Proteins and Is Associated with Low Antibody Titers against Bacterial Virulence Factors
Cited by: 7
Author(s): Stephan Michalik, Nandakumar Sundaramoorthy, Annette Murr, Maren Depke, Uwe Völker, Barbara M. Bröker, Hege Vangstein Aamot, Frank Schmidt
Software Mentions: 7
Published: almost 5 years ago

10.3389/pore.2021.604730

Identification of Key Genes Involved in Pancreatic Ductal Adenocarcinoma with Diabetes Mellitus Based on Gene Expression Profiling Analysis
Cited by: 4
Author(s): Wenbai Zhou, Yujing Wang, Hongmei Gao, Ying Jia, Yuanxin Xu, Xiaojing Wan, Zhiying Zhang, Haiqiao Yu, Shuang Yan
Software Mentions: 7
Published: over 3 years ago

10.7150/thno.52717

m⁶A regulator-based methylation modification patterns characterized by distinct tumor microenvironment immune profiles in colon cancer
Cited by: 135
Author(s): Wei Chong, Liang Shang, Jin Liu, Zhen Fang, Fengying Du, Hao Wu, Liu Yang, Zhe Wang, Chen Yang, Shengtao Jia, Liming Chen, Leping Li, Hao Chen
Software Mentions: 7
Published: almost 4 years ago

10.3390/s19071588

Reducing False Arrhythmia Alarms Using Different Methods of Probability and Class Assignment in Random Forest Learning Methods
Cited by: 9
Author(s): Krzysztof Gajowniczek, Iga Grzegorczyk, Tomasz Ząbkowski
Software Mentions: 7
Published: over 5 years ago

10.1186/s13148-021-01129-y

Differential DNA methylation and changing cell-type proportions as fibrotic stage progresses in NAFLD
Cited by: 22
Author(s): Nicholas Johnson, Xiumei Wu, Christopher D. Still, Xin Chu, Anthony Petrick, Glenn S. Gerhard, Karen N. Conneely, Johanna K. DiStefano
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-021-87577-1

Cetacean distribution models based on visual and passive acoustic data
Cited by: 11
Author(s): Kaitlin E. Frasier, Lance P. Garrison, Melissa S. Soldevilla, Sean M. Wiggins, John A. Hildebrand
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-021-80970-w

Breath can discriminate tuberculosis from other lower respiratory illness in children
Cited by: 19
Author(s): Carly A. Bobak, Lili Kang, Lesley Workman, Lindy Bateman, Mohammad Sharif Khan, Margaretha Prins, Lloyd May, Flavio A. Franchina, Cynthia Baard, Mark P. Nicol, Heather J. Zar, Jane E. Hill
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41598-021-88944-8

Association between ACE2 and TMPRSS2 nasopharyngeal expression and COVID-19 respiratory distress
Cited by: 29
Author(s): Átila Duque Rossi, João Locke Ferreira de Araújo, Tailah Bernardo de Almeida, Marcelo Ribeiro-Alves, Camila de Almeida Velozo, Jéssica Maciel de Almeida, Isabela de Carvalho Leitão, Sâmila Natiane Ferreira, Jéssica da Silva Oliveira, Hugo José Alves, Helena Toledo Scheid, Débora S. Faffe, Rafael Mello Galliez, Renata Eliane de Ávila, Gustavo Gomes Resende, Mauro Martins Teixeira, Alice Laschuk Herlinger, Aliny dos Santos Carvalho, André F. Santos, Anna Carla Pinto Castiñeiras, Bianca Isabelle Barreto Teixeira, Bianca Ortiz da Silva, Bruno Clarkson, Bruno Eduardo Dematté, Camila Nacif, Camille Victória Leal Correia de Silva, Carolina M. Voloch, Caroline Macedo Nascimento, Carolyne Lalucha Alves L. da Graça, Cássia Cristina Alves Gonçalves, Cíntia Policarpo, Diana Mariani, Ekaterini Simões Goudouri, Elaine Sobral da Costa, Elisangela Costa da Silva, Enrico Bruno Riscarolli, Érica Ramos dos Santos Nascimento, Fabio Hecht Castro Medeiros, Fábio L. Monteiro, Fernanda Nunes Santos, Fernando Luz de Castro, Filipe Romero Rebello Moreira, Francine Bittencourt Schiffler, Gabriela Bergiante Kraychete, Gabriele Silveira da Cunha, Gisely Novaes Borges da Cunha, Guilherme Sant’Anna de Lira, Gustavo Peixoto Duarte da Silva, Harrison James Westgarth, Helena D.’Anunciação de Oliveira, Helena Keito Toma, Huang Fang, Inês Corrêa Gonçalves, Ingrid Camelo da Silva, Isabela Labarba Carvalho de Almeida, Joissy Aprigio de Oliveira, Juliana Cazarin de Menezes, Juliana T.S. Fortuna, Karyne Ferreira Monteiro, Kíssyla Harley Della Pascôa França, Laura Zalcberg Renault, Lendel Correia da Costa, Leticia Averbug Correa, Liane de Jesus Ribeiro, Lídia Theodoro Boullosa, Liliane Tavares de Faria Cavalcante, Luana dos Santos Costa, Lucas Matos Millioni, Luciana Jesus da Costa, Luiza M. Higa, Marcela dos Santos Durães, Marcelo Amaral de Souza, Marcelo Calado de Paula Tôrres, Mariana Freire Campos, Mariana Quinto, Mariane Talon de Menezes, Marisa Souza Correia, Mateus Rodrigues de Queiroz, Matheus Augusto Calvano Cosentino, Mayla Gabryele Miranda de Melo, Mirela D’arc Ferreira da Costa, Pedro Paz, Raíssa Mirella dos Santos Cunha da Costa, Raquel Fernandes Coelho, Richard Araujo Maia, Rodrigo de Moraes Brindeiro, Romina Carvalho Ferreira, Sérgio Machado Lisboa, Thamiris dos Santos Miranda, Victor Akira Ota, Victoria Cortes Bastos, Viviane Guimarães Gomes, Orlando da Costa Ferreira Júnior, Terezinha Marta Pereira Pinto Castiñeiras, Renan Pedra de Souza, Amílcar Tanuri, Renato Santana Aguiar, Shana Priscila Coutinho Barroso, Cynthia Chester Cardoso
Software Mentions: 7
Published: over 3 years ago

10.3390/cells10092430

Artificial Intelligence-Assisted Identification of Genetic Factors Predisposing High-Risk Individuals to Asymptomatic Heart Failure
Cited by: 7
Author(s): Ning Yang, Chi-Hsiao Yeh, Tsung Hsien Tsai, Yi Ju Chou, Paul Wei Che Hsu, Chun-Hsien Li, Yun Hsuan Chan, Ling Kuo, Chun Tai Mao, Yu-Chiau Shyu, Ming‐Jui Hung, Chao‐Lun Lai, Huey Kang Sytwu, Ting Fen Tsai
Software Mentions: 7
Published: about 3 years ago

10.1038/s41598-021-93286-6

Development and validation of an institutional nomogram for aiding aneurysm rupture risk stratification
Cited by: 3
Author(s): Qinglin Liu, Peng Jiang, Yuhua Jiang, Huijian Ge, Shaolin Li, Hengwei Jin, Peng Liu, YouXiang Li
Software Mentions: 7
Published: over 3 years ago

10.3389/fgene.2021.744113

Identification and Validation of Hypoxia-Related lncRNA Signature as a Prognostic Model for Hepatocellular Carcinoma
Cited by: 8
Author(s): Chengke Zhou, Huajun Zhang, Liqing Lu
Software Mentions: 7
Published: about 3 years ago

10.1038/s41598-020-66404-z

Does entry to center-based childcare affect gut microbial colonization in young infants?
Cited by: 9
Author(s): Gerben D. A. Hermes, Henrik Eckermann, Willem M. de Vos, Carolina de Weerth
Software Mentions: 7
Published: over 4 years ago

10.1186/s13059-019-1862-5

scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data
Cited by: 225
Author(s): José Alquicira-Hernández, Anuja Sathe, Hanlee P. Ji, Quan Nguyen, Joseph E. Powell
Software Mentions: 7
Published: almost 5 years ago

10.3390/cancers13061296

Candidate Markers of Olaparib Response from Genomic Data Analyses of Human Cancer Cell Lines
Cited by: 3
Author(s): Setor Amuzu, Eurı́dice Carmona, Anne-Marie Mes-Masson, Celia M.T. Greenwood, Patricia N. Tonin, Jiannis Ragoussis
Software Mentions: 7
Published: over 3 years ago

10.3390/electronics9010099

Weighted Random Forests to Improve Arrhythmia Classification
Cited by: 21
Author(s): Krzysztof Gajowniczek, Iga Grzegorczyk, Tomasz Ząbkowski, Chandrajit L. Bajaj
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0124600

MLViS: A Web Tool for Machine Learning-Based Virtual Screening in Early-Phase of Drug Discovery and Development
Cited by: 36
Author(s): Selçuk Korkmaz, Gökmen Zararsız, Dinçer Göksülük
Software Mentions: 7
Published: over 9 years ago

10.15252/msb.20177881

High‐resolution definition of humoral immune response correlates of effective immunity against <scp>HIV</scp>
Cited by: 33
Author(s): Galit Alter, Karen G. Dowell, Eric N. Brown, Todd J. Suscovich, Anastassia Mikhailova, Alison E. Mahan, Bruce D. Walker, Falk Nimmerjahn, Chris Bailey‐Kellogg, Margaret E. Ackerman
Software Mentions: 7
Published: over 6 years ago

10.1007/s00330-020-07195-9

Improved differentiation between primary lung cancer and pulmonary metastasis by combining dual-energy CT–derived biomarkers with conventional CT attenuation
Cited by: 19
Author(s): Dominik Deniffel, Andreas Sauter, Alexander A. Fingerle, Ernst J. Rummeny, Marcus R. Makowski, Daniela Pfeiffer
Software Mentions: 7
Published: about 4 years ago

10.3390/e23040477

Hybrid Basketball Game Outcome Prediction Model by Integrating Data Mining Methods for the National Basketball Association
Cited by: 11
Author(s): Wei-Jen Chen, Mao-Jhen Jhou, Tian–Shyug Lee, Chi-Jie Lu
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-020-67629-8

Machine learning-based prediction of acute severity in infants hospitalized for bronchiolitis: a multicenter prospective study
Cited by: 17
Author(s): Yoshihiko Raita, Carlos A. Camargo, Charles G. Macias, Jonathan M. Mansbach, Pedro A. Piedra, Stephen C. Porter, Stephen J. Teach, Kohei Hasegawa
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0252096

Application of multi-omics data integration and machine learning approaches to identify epigenetic and transcriptomic differences between in vitro and in vivo produced bovine embryos
Cited by: 9
Author(s): María Belén Rabaglino, Alan M. O’Doherty, Jan Bojsen-Møller Secher, Patrick Lonergan, Poul Hyttel, Trudee Fair, Haja N. Kadarmideen
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-018-37802-1

The transdiagnostic structure of mental effort avoidance
Cited by: 27
Author(s): Edward H. Patzelt, Wouter Kool, Alexander J. Millner, Samuel J. Gershman
Software Mentions: 6
Published: almost 6 years ago

10.3389/fpsyg.2018.00644

Reading Profiles in Multi-Site Data With Missingness
Cited by: 3
Author(s): Mark A. Eckert, Kenneth I. Vaden, Mulugeta Gebregziabher
Software Mentions: 6
Published: over 6 years ago

10.1155/2020/2357840

A Real-World Study of Prognosis of N0M0 Hepatocellular Carcinoma with Hepatic Resection Based on SEER Database
Cited by: 3
Author(s): Guoqi Zhu, Wensheng Wang, Qin Liu, Dongfeng Chen, Liangzhi Wen
Software Mentions: 6
Published: over 4 years ago

10.3390/genes9010019

High Density Single Nucleotide Polymorphism (SNP) Mapping and Quantitative Trait Loci (QTL) Analysis in a Biparental Spring Triticale Population Localized Major and Minor Effect Fusarium Head Blight Resistance and Associated Traits QTL
Cited by: 28
Author(s): Raman Dhariwal, George Fedak, Yves Dion, Curtis Pozniak, André Laroche, François Eudes, H. S. Randhawa
Software Mentions: 6
Published: almost 7 years ago

10.1186/s40168-019-0686-6

Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets
Cited by: 32
Author(s): Anukriti Sharma, Miles Richardson, Lauren Cralle, Christopher E. Stamper, Juan P. Maestre, Kelly A. Stearns‐Yoder, Teodor T. Postolache, Katherine L Bates, Kerry A. Kinney, Lisa A. Brenner, Christopher A. Lowry, Jack A. Gilbert, Andrew J. Hoisington
Software Mentions: 6
Published: over 5 years ago

10.1186/s40168-019-0705-7

Microbial indicators of environmental perturbations in coral reef ecosystems
Cited by: 109
Author(s): Bettina Glasl, David G. Bourne, Pedro R. Frade, Torsten Thomas, Britta Schaffelke, Nicole S. Webster
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-019-52899-8

Multiplex analysis of 40 cytokines do not allow separation between endometriosis patients and controls
Cited by: 11
Author(s): Tamara Knific, Dmytro Fishman, Andrej Vogler, Manuela Gstöttner, René Wenzl, Hedi Peterson, Tea Lanišnik Rižner
Software Mentions: 6
Published: about 5 years ago

10.1186/1471-2288-14-116

Validation of prediction models based on lasso regression with multiply imputed data
Cited by: 91
Author(s): Jammbe Z. Musoro, Aeilko H. Zwinderman, Milo A. Puhan, Gerben ter Riet, Ronald B. Geskus
Software Mentions: 6
Published: about 10 years ago

10.1038/s41598-018-21851-7

Elastic net regularized regression for time-series analysis of plasma metabolome stability under sub-optimal freezing condition
Cited by: 15
Author(s): Gerard Bryan Gonzales, Sarah De Saeger
Software Mentions: 6
Published: over 6 years ago

10.3390/metabo11050326

Exploration of Blood Lipoprotein and Lipid Fraction Profiles in Healthy Subjects through Integrated Univariate, Multivariate, and Network Analysis Reveals Association of Lipase Activity and Cholesterol Esterification with Sex and Age
Cited by: 4
Author(s): Yasmijn Balder, Alessia Vignoli, Leonardo Tenori, Claudio Luchinat, Edoardo Saccenti
Software Mentions: 6
Published: over 3 years ago

10.1186/s12911-021-01463-4

Assessing elderly’s functional balance and mobility via analyzing data from waist-mounted tri-axial wearable accelerometers in timed up and go tests
Cited by: 8
Author(s): Lisha Yu, Yang Zhao, Hailiang Wang, Tien‐Lung Sun, Terrence E. Murphy, Kwok‐Leung Tsui
Software Mentions: 6
Published: over 3 years ago

10.1038/s41598-017-13056-1

A machine-learning heuristic to improve gene score prediction of polygenic traits
Cited by: 63
Author(s): Guillaume Paré, Mao S, Wei Q. Deng
Software Mentions: 6
Published: about 7 years ago

10.3389/fped.2021.719352

Risk Identification of Bronchopulmonary Dysplasia in Premature Infants Based on Machine Learning
Cited by: 9
Author(s): Jia Lei, Tiankai Sun, Yongjiang Jiang, Ping Wu, Jinjian Fu, Tao Zhang, Eric McGrath
Software Mentions: 6
Published: over 3 years ago

10.1016/j.redox.2020.101764

Prediction of survival odds in COVID-19 by zinc, age and selenoprotein P as composite biomarker
Cited by: 130
Author(s): Raban Arved Heller, Qian Sun, Julian Hackler, Julian Seelig, Linda Seibert, Asan Cherkezov, Waldemar B. Minich, Petra Seemann, Joachim Diegmann, Maximilian Pilz, Manuel Bachmann, Alireza Ranjbar, Arash Moghaddam, Lutz Schomburg
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0206862

Optimal intensive care outcome prediction over time using machine learning
Cited by: 64
Author(s): Christopher Meiring, Abhishek Dixit, Steve Harris, Niall MacCallum, David Brealey, Peter Watkinson, Andrew Jones, Simon Ashworth, Richard Beale, Stephen Brett, Mervyn Singer, Ari Ercole
Software Mentions: 6
Published: about 6 years ago

10.3389/fcell.2021.724860

Integrative Analysis of Biomarkers Through Machine Learning Identifies Stemness Features in Colorectal Cancer
Cited by: 7
Author(s): Ran Wei, Jichuan Quan, Shuofeng Li, Hengchang Liu, Xu Guan, Zheng Jiang, Xishan Wang
Software Mentions: 6
Published: about 3 years ago

10.3390/ijms22094394

Towards the Interpretability of Machine Learning Predictions for Medical Applications Targeting Personalised Therapies: A Cancer Case Survey
Cited by: 25
Author(s): Antonio Jesús Banegas-Luna, Jorge Peña‐García, Adrian Iftene, Fiorella Guadagni, Patrizia Ferroni, Noemi Scarpato, Fabio Massimo Zanzotto, Andrés Bueno-Crespo, Horacio Pérez‐Sánchez
Software Mentions: 6
Published: over 3 years ago

10.3390/jpm10030096

Prediction of Coronary Artery Calcium Score Using Machine Learning in a Healthy Population
Cited by: 7
Author(s): Jong-Seok Lee, Jae Sung Lim, Younggi Chu, Changhee Lee, Ohk Hyun Ryu, Hyun-Soo Choi, Yongsoon Park, Chul‐Ho Kim
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pone.0240362

A machine learning approach to the digitalization of bank customers: Evidence from random and causal forests
Cited by: 28
Author(s): Santiago Carbó-Valverde, Pedro J. Cuadros-Solas, Francisco Rodríguez-Fernández
Software Mentions: 6
Published: about 4 years ago

10.3390/ijms21176441

Hyperspectral Reflectance of Light-Adapted Leaves Can Predict Both Dark- and Light-Adapted Chl Fluorescence Parameters, and the Effects of Chronic Ozone Exposure on Date Palm (Phoenix dactylifera)
Cited by: 18
Author(s): Lorenzo Cotrozzi, Giacomo Lorenzini, Cristina Nali, Elisa Pellegrini, Vincenzo Saponaro, Yasutomo Hoshika, Leila Arab, Heinz Rennenberg, Elena Paoletti
Software Mentions: 6
Published: about 4 years ago

10.1186/s12859-019-3178-6

SIMLIN: a bioinformatics tool for prediction of S-sulphenylation in the human proteome based on multi-stage ensemble-learning models
Cited by: 8
Author(s): Xiaochuan Wang, Chen Li, Fuyi Li, Varun Sharma, Jiangning Song, Geoffrey I. Webb
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0232534

A model for the assessment of bluetongue virus serotype 1 persistence in Spain
Cited by: 8
Author(s): Cecilia Aguilar-Vega, Eduardo Fernández-Carrión, Javier Lucientes, José Manuel Sánchez‐Vizcaíno
Software Mentions: 6
Published: over 4 years ago

10.7554/eLife.65776

Developing a multivariate prediction model of antibody features associated with protection of malaria-infected pregnant women from placental malaria
Cited by: 18
Author(s): Elizabeth H. Aitken, Timon Damelang, Amaya Ortega-Pajares, Agersew Alemu, Wina Hasang, Saber Dini, Holger W. Unger, Maria Ome-Kaius, Morten A. Nielsen, Ali Salanti, Joe Smith, Stephen J. Kent, P Mark Hogarth, Bruce D. Wines, Julie A. Simpson, Amy W. Chung, Stephen J. Rogerson
Software Mentions: 6
Published: over 3 years ago

10.1186/s12859-020-03891-x

Integrative approach for detecting membrane proteins
Cited by: 6
Author(s): Munira Alballa, Gregory Butler
Software Mentions: 6
Published: almost 4 years ago

10.3390/foods10071543

Comparative Study of Several Machine Learning Algorithms for Classification of Unifloral Honeys
Cited by: 10
Author(s): Fernando Mateo, Andrea Tarazona, Eva M. Mateo
Software Mentions: 6
Published: over 3 years ago

10.1089/cmb.2019.0320

Explainable Deep Learning for Augmentation of Small RNA Expression Profiles
Cited by: 8
Author(s): Jeļena Fiošina, Maksims Fiošins, Stefan Bonn
Software Mentions: 6
Published: almost 5 years ago

10.3390/ijms21218160

Proteomic Profiling of Archived Tissue of Primary Melanoma Identifies Proteins Associated with Metastasis
Cited by: 3
Author(s): Andrew Shapanis, Chester Lai, Mathew Sommerlad, Erika Parkinson, Eugene Healy, Paul Skipp
Software Mentions: 6
Published: about 4 years ago

10.1371/journal.pgen.1009353

Fitness landscape of a dynamic RNA structure
Cited by: 5
Author(s): Valerie W. C. Soo, Jacob B. Swadling, Aline Faure, Tobias Warnecke
Software Mentions: 6
Published: almost 4 years ago

10.2196/18741

Assessing the Contribution of Self-Monitoring Through a Commercial Weight Loss App: Mediation and Predictive Modeling Study
Cited by: 4
Author(s): Gregory Farage, Courtney Simmons, Mehmet Kocak, Robert C. Klesges, G. Wayne Talcott, Phyllis A. Richey, Marion E. Hare, Karen C. Johnson, Śaunak Sen, Rebecca A. Krukowski
Software Mentions: 6
Published: over 3 years ago

10.1038/s41409-019-0520-6

High-resolution HLA phased haplotype frequencies to predict the success of unrelated donor searches and clinical outcome following hematopoietic stem cell transplantation
Cited by: 10
Author(s): Stéphane Bühler, Helen Baldomero, Sylvie Ferrari‐Lacraz, José Manuel Nunes, Alicia Sanchez‐Mazas, Stravroula Massouridi-Levrat, Dominik Heim, Jörg Halter, Nair Gayathri, Yves Chalandon, Urs Schanz, Tayfun Güngör, Grazia Nicoloso, Jean‐Marie Tiercy, Jakob Passweg, Jean Villard
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pcbi.1008831

Accuracy in the prediction of disease epidemics when ensembling simple but highly correlated models
Cited by: 9
Author(s): Denis A. Shah, E. D. De Wolf, Pierce A. Paul, L. V. Madden
Software Mentions: 6
Published: over 3 years ago

10.1186/s12877-019-1156-5

No effect of 25-hydroxyvitamin D supplementation on the skeletal muscle transcriptome in vitamin D deficient frail older adults
Cited by: 11
Author(s): Roland W. J. Hangelbroek, Anouk M.M. Vaes, Mark V. Boekschoten, Lex B. Verdijk, Guido Hooiveld, Luc J. C. van Loon, Lisette C. P. G. M. de Groot, Sander Kersten
Software Mentions: 6
Published: over 5 years ago

10.1186/s12864-015-2266-x

IRES-dependent translated genes in fungi: computational prediction, phylogenetic conservation and functional association
Cited by: 9
Author(s): Esteban Peguero-Sanchez, Liliana Pardo-López, Enrique Merino
Software Mentions: 6
Published: almost 9 years ago

10.1186/s13613-017-0263-8

Diagnostic accuracy of quantitative neuromuscular ultrasound for the diagnosis of intensive care unit-acquired weakness: a cross-sectional observational study
Cited by: 49
Author(s): Esther Witteveen, Juultje Sommers, Luuk Wieske, Jonne Doorduin, Nens van Alfen, Marcus J. Schultz, Ivo N. van Schaik, Janneke Horn, Camiel Verhamme
Software Mentions: 6
Published: over 7 years ago

10.1186/s13326-020-00228-8

Identifying disease trajectories with predicate information from a knowledge graph
Cited by: 4
Author(s): Wytze J. Vlietstra, Rein Vos, Marjan van den Akker, Erik M. van Mulligen, Jan A. Kors
Software Mentions: 6
Published: over 4 years ago

10.1186/s10194-019-0987-y

Predicting treatment response using pharmacy register in migraine
Cited by: 6
Author(s): Thomas Folkmann Hansen, Mona Ameri Chalmer, Thilde Marie Haspang, Lisette J. A. Kogelman, Jes Olesen
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.10187

Habitat preference, movements and growth of giant mottled eels, <i>Anguilla marmorata</i>, in a small subtropical Amami-Oshima Island river
Cited by: 9
Author(s): Hikaru Itakura, Ryoshiro Wakiya
Software Mentions: 6
Published: about 4 years ago

10.3390/insects11100669

Validating Morphometrics with DNA Barcoding to Reliably Separate Three Cryptic Species of Bombus Cresson (Hymenoptera: Apidae)
Cited by: 7
Author(s): Joan Milam, Dennis E. Johnson, Jeremy C. Andersen, Aliza Fassler, Desirée L. Narango, Joseph S. Elkinton
Software Mentions: 6
Published: about 4 years ago

10.3390/diagnostics11050887

A Comprehensive Machine Learning Framework for the Exact Prediction of the Age of Onset in Familial and Sporadic Alzheimer’s Disease
Cited by: 3
Author(s): Jorge I. Vélez, Luiggi A. Samper, Mauricio Arcos-Holzinger, Lady G. Espinosa, Mario A. Isaza-Ruget, Francisco Lopera, Mauricio Arcos‐Burgos
Software Mentions: 6
Published: over 3 years ago

10.1186/s13072-020-00379-z

DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna
Cited by: 15
Author(s): Jack Hearn, Fiona A. Plenderleith, Tom J. Little
Software Mentions: 6
Published: almost 4 years ago

10.3390/diagnostics9010008

Feature Extraction in Motor Activity Signal: Towards a Depression Episodes Detection in Unipolar and Bipolar Patients
Cited by: 24
Author(s): Laura A. Zanella-Calzada, Carlos E. Galván-Tejada, Nubia M. Chávez-Lamas, Ma. del Carmen Gracia-Cortés, Rafael Magallanes‐Quintanar, José M. Celaya-Padilla, Jorge I. Galván-Tejada, Hamurabi Gamboa-Rosales
Software Mentions: 6
Published: almost 6 years ago

10.1128/mBio.00170-21

Viral Rebound Kinetics Correlate with Distinct HIV Antibody Features
Cited by: 7
Author(s): Yannic C. Bartsch, Carolin Loos, Evan Rossignol, Jesse Fajnzylber, Dansu Yuan, Anchalee Avihingsanon, Sasiwimol Ubolyam, Thidarat Jupimai, Bernard Hirschel, Jintanat Ananworanich, Douglas A. Lauffenburger, Jonathan Z. Li, Galit Alter, Boris Jülg
Software Mentions: 6
Published: over 3 years ago

10.2196/21331

Detection of Bulbar Involvement in Patients With Amyotrophic Lateral Sclerosis by Machine Learning Voice Analysis: Diagnostic Decision Support Development Study
Cited by: 9
Author(s): Alberto Tena, Francesc Clarià, Francesc Solsona, Einar Meister, Mònica Povedano
Software Mentions: 6
Published: over 3 years ago

10.3390/healthcare9030317

Automatic Evaluation of Heart Condition According to the Sounds Emitted and Implementing Six Classification Methods
Cited by: 5
Author(s): Manuel A. Soto-Murillo, Jorge I. Galván-Tejada, Carlos E. Galván-Tejada, José M. Celaya-Padilla, Huizilopoztli Luna-García, Rafael Magallanes‐Quintanar, Tania A. Gutiérrez-García, Hamurabi Gamboa-Rosales
Software Mentions: 6
Published: over 3 years ago

10.1186/s13643-020-01520-5

Aligning text mining and machine learning algorithms with best practices for study selection in systematic literature reviews
Cited by: 10
Author(s): Evan Popoff, M. Besada, JP Jansen, Shannon Cope, Steve Kanters
Software Mentions: 6
Published: almost 4 years ago

10.3390/v13020169

The Ecology of Nipah Virus in Bangladesh: A Nexus of Land-Use Change and Opportunistic Feeding Behavior in Bats
Cited by: 39
Author(s): Clifton McKee, Ariful Islam, Stephen P. Luby, Henrik Salje, Peter J. Hudson, Raina K. Plowright, Emily S. Gurley
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12885-021-08431-1

Five metastasis-related mRNAs signature predicting the survival of patients with liver hepatocellular carcinoma
Cited by: 7
Author(s): Chao Chen, Yan Qun Liu, Shi Qiu, Ya Li, Ning Jun Yu, Kang Liu, Li Ming Zhong
Software Mentions: 6
Published: over 3 years ago

10.1002/hbm.24554

Detection of mild cognitive impairment in a community‐dwelling population using quantitative, multiparametric MRI‐based classification
Cited by: 6
Author(s): Mark J. R. J. Bouts, Jeroen van der Grond, Meike W. Vernooij, Marisa Koini, Tijn M. Schouten, Frank de Vos, Rogier A. Feis, Lotte G.M. Cremers, Anita Lechner, Reinhold Schmidt, Mark de Rooij, Wiro J. Niessen, M. Arfan Ikram, Serge A.R.B. Rombouts
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-81728-0

The impact of tinnitus distress on cognition
Cited by: 21
Author(s): Patrick Neff, Jorge Simões, S Psatha, Nyamaa Amarjargal, Benjamin Boecking, Leonie Rausch, Juliane Dettling-Papargyris, Christine Funk, Petra Brüeggemann, Birgit Mazurek
Software Mentions: 6
Published: almost 4 years ago

10.3390/cancers13133116

Plasma Proteomic Analysis in Non-Small Cell Lung Cancer Patients Treated with PD-1/PD-L1 Blockade
Cited by: 14
Author(s): Mohamed Eltahir, Johan Isaksson, Johanna Sofia Margareta Mattsson, Klas Kärre, Johan Botling, Martin Lord, Sara M. Mangsbo, Patrick Micke
Software Mentions: 6
Published: over 3 years ago

10.1186/1758-2946-3-51

An investigation into pharmaceutically relevant mutagenicity data and the influence on Ames predictive potential
Cited by: 47
Author(s): Patrick McCarren, Clayton Springer, Lewis Whitehead
Software Mentions: 6
Published: almost 13 years ago

10.1371/journal.pone.0236631

Citizen science for predicting spatio-temporal patterns in seabird abundance during migration
Cited by: 5
Author(s): Beatriz Martín, Alejandro Onrubia, Julio González-Arias, Juan Antonio Vicente-Virseda
Software Mentions: 5
Published: over 4 years ago

10.3389/fsurg.2021.659422

Development and Validation a Nomogram for Predicting Overall Survival in Patients With Intrahepatic Cholangiocarcinoma
Cited by: 11
Author(s): Yuan Chen, Zhigang Hu, Kai Wang, Shubing Zou
Software Mentions: 5
Published: over 3 years ago

10.3389/fcell.2021.712196

A Novel Classifier Based on Urinary Proteomics for Distinguishing Between Benign and Malignant Ovarian Tumors
Cited by: 11
Author(s): Maowei Ni, Jie Zhou, Zhihui Zhu, Jingtao Yuan, Wei‐Jiang Gong, Jun Zhu, Zhong Zheng, Huajun Zhao
Software Mentions: 5
Published: about 3 years ago

10.18632/aging.104170

Identification of prognostic chromatin-remodeling genes in clear cell renal cell carcinoma
Cited by: 4
Author(s): Yujing Yang, Chengyuan Wang, Ningde Wei, Tao Hong, Zuyu Sun, Jiawen Xiao, Jiaxi Yao, Zhi Li, Tao Liu
Software Mentions: 5
Published: about 4 years ago

10.3390/molecules26061789

Needle Trap Device-GC-MS for Characterization of Lung Diseases Based on Breath VOC Profiles
Cited by: 14
Author(s): Fernanda Monedeiro, Maciej Monedeiro-Milanowski, Ileana-Andreea Raţiu, Beata Brożek, Tomasz Ligor, Bogusław Buszewski
Software Mentions: 5
Published: over 3 years ago

10.3390/ani10071182

Predicting Ewe Body Condition Score Using Lifetime Liveweight and Liveweight Change, and Previous Body Condition Score Record
Cited by: 5
Author(s): Jimmy Semakula, René A. Corner-Thomas, S. T. Morris, Hugh T. Blair, P. R. Kenyon
Software Mentions: 5
Published: over 4 years ago

10.3389/fcell.2021.664415

Accurate Prediction of Prognosis by Integrating Clinical and Molecular Characteristics in Colon Cancer
Cited by: 4
Author(s): Liru Wang, Mu Chun Su, Mengyan Zhang, Hongyan Zhao, Hongli Wang, Jie Xing, Chang-Jun Guo, Dianshuang Zhou, Wenhui Xue, Haibo Lu, Yan Zhang
Software Mentions: 5
Published: over 3 years ago

10.3390/molecules26051357

The Influence of Smoking Status on Exhaled Breath Profiles in Asthma and COPD Patients
Cited by: 6
Author(s): Stefania Principe, Job J.M.H. van Bragt, Cristina Longo, Rob de Vries, Peter J. Sterk, Nicola Scichilone, Susanne Vijverberg, Anke‐Hilse Maitland‐van der Zee
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0049475

Characteristics and Predictive Value of Blood Transcriptome Signature in Males with Autism Spectrum Disorders
Cited by: 139
Author(s): Sek Won Kong, Christin Collins, Yuko Shimizu‐Motohashi, Ingrid A. Holm, Malcolm Campbell, In Hee Lee, Stephanie J. Brewster, Ellen Hanson, Heather K. Harris, Kathryn R. Lowe, Adrianna Saada, Andrea L. Mora, Kimberly A. Madison, Rachel Hundley, Jessica Egan, Jill McCarthy, Alal Eran, Michal Galdzicki, Leonard Rappaport, Louis M. Kunkel, Isaac S. Kohane
Software Mentions: 5
Published: almost 12 years ago

10.3390/microorganisms8111713

Genetic Variation and Preliminary Indications of Divergent Niche Adaptation in Cryptic Clade II of Escherichia
Cited by: 3
Author(s): Zhi Yong Shen, Xiu Pei Koh, Yan Yu, S. S. Lau
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0231999

The genomic landscape of metastatic breast cancer: Insights from 11,000 tumors
Cited by: 28
Author(s): Jacob Rinaldi, Ethan S. Sokol, Ryan J. Hartmaier, Sally E. Trabucco, Garrett M. Frampton, Michael E. Goldberg, Lee A. Albacker, Anneleen Daemen, Gerard Manning
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-018-30236-9

Machine learning for fast identification of bacteraemia in SIRS patients treated on standard care wards: a cohort study
Cited by: 30
Author(s): Franz Ratzinger, Helmuth Haslacher, Thomas Perkmann, Matilde Pinzan, Philip Anner, Athanasios Makristathis, Heinz Burgmann, Georg Heinze, Georg Dorffner
Software Mentions: 5
Published: over 6 years ago

10.1186/s12859-020-3400-6

GARS: Genetic Algorithm for the identification of a Robust Subset of features in high-dimensional datasets
Cited by: 27
Author(s): Mattia Chiesa, Giada Maioli, Gualtiero I. Colombo, Luca Piacentini
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0209018

Mucopolysaccharidosis type II detection by Naïve Bayes Classifier: An example of patient classification for a rare disease using electronic medical records from the Canadian Primary Care Sentinel Surveillance Network
Cited by: 19
Author(s): Behrouz Ehsani-Moghaddam, John Queenan, Jennifer MacKenzie, Richard Birtwhistle
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0252025

Prediction of preterm birth in nulliparous women using logistic regression and machine learning
Cited by: 14
Author(s): Reza Arabi Belaghi, Joseph Beyene, Sarah D. McDonald
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-018-30778-y

Predators Show Seasonal Predilections for Model Clay Spiders in an Urban Environment
Cited by: 9
Author(s): Leanda Denise Mason, Grant Wardell‐Johnson, Sarah Luxton, Philip W. Bateman
Software Mentions: 5
Published: over 6 years ago

10.1099/mgen.0.000366

AB_SA: Accessory genes-Based Source Attribution – tracing the source of Salmonella enterica Typhimurium environmental strains
Cited by: 5
Author(s): Laurent Guillier, Michèle Gourmelon, Solen Lozach, Sabrina Cadel-Six, Marie-Léone Vignaud, Nanna Sophia Mucha Munck, Tine Hald, Federica Di Palma
Software Mentions: 5
Published: over 4 years ago

10.1186/s12911-019-0929-2

ThalPred: a web-based prediction tool for discriminating thalassemia trait and iron deficiency anemia
Cited by: 18
Author(s): Vishuda Laengsri, Watshara Shoombuatong, W. Adirojananon, Chanin Nantasenamat, Virapong Prachayasittikul, Pornlada Nuchnoi
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-017-18321-x

Clay content and pH: soil characteristic associations with the persistent presence of chronic wasting disease in northern Illinois
Cited by: 16
Author(s): Sheena J. Dorak, Michelle L. Green, Michelle M. Wander, Marilyn O. Ruiz, Michael Buhnerkempe, Ting Tian, J. Novakofski, Nohra E. Mateus‐Pinilla
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0251963

Factors indicating intention to vaccinate with a COVID-19 vaccine among older U.S. adults
Cited by: 55
Author(s): Janeta Nikolovski, Martin Koldijk, Gerrit Jan Weverling, John A. Spertus, Mintu P. Turakhia, Leslie A. Saxon, C. Michael Gibson, John Whang, Troy C. Sarich, Robert A. Zambon, Nnamdi Ezeanochie, Jennifer Turgiss, Robyn Jones, Jeff Stoddard, Paul R. Burton, Ann Marie Návar
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-017-15137-7

Development of multivariable models to predict change in Body Mass Index within a clinical trial population of psychotic individuals
Cited by: 13
Author(s): Rebecca Harrison, Fiona Gaughran, Robin M. Murray, Sang Hyuck Lee, Jose Paya Cano, David Dempster, Charles Curtis, Danai Dima, Hamel Patel, Simone de Jong, Gerome Breen
Software Mentions: 5
Published: about 7 years ago

10.3390/metabo11090638

Metabolite Ratios as Quality Indicators for Pre-Analytical Variation in Serum and EDTA Plasma
Cited by: 6
Author(s): Sven Heiling, Nadine Knutti, Franziska Scherr, Jörg Geiger, Juliane Weikert, Michael Rose, Roland Jahns, Uta Ceglarek, André Scherag, Michael Kiehntopf
Software Mentions: 5
Published: about 3 years ago