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10.3389/fcell.2021.700029

LncRNA DGCR5 Isoform-1 Silencing Suppresses the Malignant Phenotype of Clear Cell Renal Cell Carcinoma via miR-211-5p/Snail Signal Axis
Cited by: 9
Author(s): Guangxin Zhong, Dan Luo, Yijun Fan, Jue Wang, Bingqiang Liu, Zhonghua Xu, Xiang Zhang
Software Mentions: 1
Published: about 5 years ago

10.1186/s13039-014-0075-6

Investigation of selected genomic deletions and duplications in a cohort of 338 patients presenting with syndromic obesity by multiplex ligation-dependent probe amplification using synthetic probes
Cited by: 10
Author(s): Carla Sustek D’Angelo, Monica Castro Varela, Cláudia Irene Emílio de Castro, Chong Kim, Débora Romeo Bertola, Charles Marques Lourenço, Ana Beatriz Alvarez Perez, Célia Priszkulnik Koiffmann
Software Mentions: 1
Published: almost 12 years ago

10.3389/fcimb.2019.00175

Diverse Papillomavirus Types Induce Endosomal Tubulation
Cited by: 4
Author(s): Abida Siddiqa, Paola Massimi, David Pim, Lawrence Banks
Software Mentions: 1
Published: over 7 years ago

10.3389/fncel.2015.00142

Inducible and combinatorial gene manipulation in mouse brain
Cited by: 10
Author(s): Godwin Dogbevia, Ricardo Marticorena-Alvarez, Melanie Bausen, Rolf Sprengel, Mazahir T. Hasan
Software Mentions: 1
Published: over 11 years ago

10.1186/1755-8166-1-11

Chromosomal assignment of canine THADA gene to CFA 10q25
Cited by: 3
Author(s): Jan T. Soller, Claudia Beuing, Hugo Murua Escobar, Susanne Winkler, Nicola Reimann-Berg, Norbert Drieschner, G. Dolf, C. Schelling, Ingo Nolte, Jörn Bullerdiek
Software Mentions: 1
Published: over 18 years ago

10.3389/fendo.2021.648844

Vitamin D Level and Vitamin D Receptor Genetic Variation Were Involved in the Risk of Non-Alcoholic Fatty Liver Disease: A Case-Control Study
Cited by: 5
Author(s): Ru Zhang, Minxian Wang, Min Wang, Liuxin Zhang, Yajie Ding, Zongzhe Tang, Zuqiang Fu, Haozhi Fan, Wei Zhang, Jie Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fendo.2019.00213

Analysis of the Role of the Mc4r System in Development, Growth, and Puberty of Medaka
Cited by: 16
Author(s): Ruiqi Liu, Masato Kinoshita, Mateus Contar Adolfi, Manfred Schartl
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.28037

Diverse transcriptional regulation and functional effects revealed by CRISPR/Cas9-directed epigenetic editing
Cited by: 3
Author(s): Miguel Vizoso, Jacco van Rheenen
Software Mentions: 1
Published: about 5 years ago

10.3389/fendo.2018.00195

Glial Cells Missing 1 Regulates Equine Chorionic Gonadotrophin Beta Subunit via Binding to the Proximal Promoter
Cited by: 2
Author(s): Jordan E. Read, Victoria Cabrera-Sharp, Phoebe Kitscha, Judith E. Cartwright, Peter King, Robert C. Fowkes, Amanda M. de Mestre
Software Mentions: 1
Published: over 8 years ago

10.3390/jpm11060468

Association of LINC00673 Genetic Variants with Progression of Oral Cancer
Cited by: 15
Author(s): Shih‐Chi Su, Chiao‐Wen Lin, Po‐Chung Ju, Lun‐Ching Chang, Chun‐Yi Chuang, Yu-Fan Liu, Ming‐Ju Hsieh
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2021.707644

Suppression of CPSF6 Enhances Apoptosis Through Alternative Polyadenylation-Mediated Shortening of the VHL 3′UTR in Gastric Cancer Cells
Cited by: 8
Author(s): Xinglong Shi, Keshuo Ding, Qiang Zhao, Pengxiao Li, Yani Kang, Sheng Tan, Jingyong Sun
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13039-017-0308-6

Incidence of the 22q11.2 deletion in a large cohort of miscarriage samples
Cited by: 25
Author(s): Melissa Maisenbacher, Katrina Merrion, B. Pettersen, Michael Young, Kiyoung Paik, Sushma Iyengar, Stephanie Kareht, Styrmir Sigurjonsson, Zachary Demko, Kimberly Martin
Software Mentions: 1
Published: over 9 years ago

10.3390/jpm11030231

The Epidemiology and Genetics of Hyperuricemia and Gout across Major Racial Groups: A Literature Review and Population Genetics Secondary Database Analysis
Cited by: 45
Author(s): Faven Butler, Ali Alghubayshi, Youssef M Roman
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2013.00054

Dysfunction of the Heteromeric KV7.3/KV7.5 Potassium Channel is Associated with Autism Spectrum Disorders
Cited by: 36
Author(s): Mette Gilling, Hanne B. Rasmussen, Kirstine Calloe, Ana Filipa Sequeira, Marta Baretto, Guiomar Oliveira, Joana Almeida, Marlene Briciet Lauritsen, Reinhard Ullmann, Susanne E. Boonen, Karen Brøndum‐Nielsen, Vera M. Kalscheuer, Zeynep Tümer, Astrid M. Vicente, Nicole Schmitt, Niels Tommerup
Software Mentions: 1
Published: over 13 years ago

10.3389/fgene.2019.01105

Identification of Novel Microsatellite Markers Flanking the SMN1 and SMN2 Duplicated Region and Inclusion Into a Single-Tube Tridecaplex Panel for Haplotype-Based Preimplantation Genetic Testing of Spinal Muscular Atrophy
Cited by: 2
Author(s): Mingjue Zhao, Mulias Lian, Foong Koon Cheah, Arnold S.C. Tan, Anupriya Agarwal, Samuel S. Chong
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40101-018-0169-7

Association of EGLN1 genetic polymorphisms with SpO2 responses to acute hypobaric hypoxia in a Japanese cohort
Cited by: 13
Author(s): Yoshiki Yasukochi, Takayuki Nishimura, Midori Motoi, Shigeki Watanuki
Software Mentions: 1
Published: over 8 years ago

10.1186/s13039-015-0153-4

High rates of submicroscopic aberrations in karyotypically normal acute lymphoblastic leukemia
Cited by: 16
Author(s): Moneeb A.K. Othman, Joana B. Melo, Isabel M. Carreira, Martina Rinčić, Anita Glaser, Beata Grygalewicz, Bernd Gruhn, Kathleen Wilhelm, Katharina Rittscher, Britta Meyer, Maria Luíza Macedo Silva, Terezinha de Jesus Marques Salles, Thomas Liehr
Software Mentions: 1
Published: about 11 years ago

10.3389/fgene.2019.00547

Novel SCN5A Frameshift Mutation in Brugada Syndrome Associated With Complex Arrhythmic Phenotype
Cited by: 9
Author(s): Emanuele Micaglio, Michelle M. Monasky, Giuseppe Ciconte, Gabriele Vicedomini, Manuel Conti, Valerio Mecarocci, Luigi Giannelli, Federica Giordano, Alberto Pollina, Massimo Saviano, Paolo Pozzi, Chiara Di Resta, Sara Benedetti, Maurizio Ferrari, Vincenzo Santinelli, Carlo Pappone
Software Mentions: 1
Published: over 7 years ago

10.1186/s13039-020-00510-5

Non-classical 1p36 deletion in a patient with Duane retraction syndrome: case report and literature review
Cited by: 2
Author(s): Emiy Yokoyama, Camilo E. Villarroel, Sinhué Diaz, Victoria del Castillo, Patricia Pérez-Vera, Consuelo Salas-Labadía, S Gómez, Reneé Barreda, Bertha Molina, Sara Frías
Software Mentions: 1
Published: about 6 years ago

10.3389/fgene.2021.699894

Case Report: Novel NIPBL Variants Cause Cornelia de Lange Syndrome in Chinese Patients
Cited by: 2
Author(s): Ying Peng, Changbiao Liang, Hui Xi, Shunli Yang, Junfeng Hu, Jialun Pang, Jing Liu, Yingchun Luo, Chengyuan Tang, Wanqin Xie, Hua Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2020.627007

Human Ubiquitin-Specific Peptidase 18 Is Regulated by microRNAs via the 3'Untranslated Region, A Sequence Duplicated in Long Intergenic Non-coding RNA Genes Residing in chr22q11.21
Cited by: 11
Author(s): Erminia Rubino, Melania Cruciani, Nicolas Tchitchek, Anna Le Tortorec, Antoine Rolland, Önay Veli, Leslie Vallet, Giulia Gaggi, Frédérique Michel, Nathalie Dejucq-Rainsford, Sandra Pellegrini
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2014.00344

Nuclear and mitochondrial tRNA-lookalikes in the human genome
Cited by: 32
Author(s): Aristeidis G. Telonis, Phillipe Loher, Yohei Kirino, Isidore Rigoutsos
Software Mentions: 1
Published: almost 12 years ago

10.3389/fgene.2020.00967

Ethnic and Adipose Depot Specific Associations Between DNA Methylation and Metabolic Risk
Cited by: 7
Author(s): Carmen Pheiffer, Tarryn Willmer, Stephanie Dias, Yoonus Abrahams, Johan Louw, Julia H. Goedecke
Software Mentions: 1
Published: almost 6 years ago

10.3389/fgene.2018.00009

An Update on Phosphodiesterase Mutations Underlying Genetic Etiology of Hearing Loss and Retinitis Pigmentosa
Cited by: 4
Author(s): Rahul Mittal, Nicole Bencie, James M. Parrish, George Liu, Jeenu Mittal, Denise Yan, Xue Zhong Liu
Software Mentions: 1
Published: over 8 years ago

10.1186/s13039-021-00554-1

Terminal 10q26.12 deletion is associated with neonatal asymmetric crying facies syndrome: a case report and literature review
Cited by: 0
Author(s): Qinghong Li, Chunmei Sun, Jinzhen Guo, Zhang Wen, Liping Zhang
Software Mentions: 1
Published: about 5 years ago

10.1098/rsob.120054

Transcriptome sequencing of black grouse ( Tetrao tetrix ) for immune gene discovery and microsatellite development
Cited by: 26
Author(s): Biao Wang, Robert Ekblom, Todd A. Castoe, Eleanor P. Jones, Radoslav Kozma, Erik Bongcam‐Rudloff, David D. Pollock, Jacob Höglund
Software Mentions: 1
Published: over 14 years ago

10.1186/s13039-017-0311-y

Molecular cytogenetic characterisation of a novel de novo ring chromosome 6 involving a terminal 6p deletion and terminal 6q duplication in the different arms of the same chromosome
Cited by: 10
Author(s): Nikolai Paul Pace, Frideriki Maggouta, Melissa Twigden, Isabella Borg
Software Mentions: 1
Published: over 9 years ago

10.1186/s13039-016-0266-4

Genome wide array-CGH and qPCR analysis for the identification of genome defects in Williams’ syndrome patients in Saudi Arabia
Cited by: 5
Author(s): Ibtessam R Hussein, Afaf Magbooli, Etimad Huwait, Adeel G. Chaudhary, Rima S Bader, Mamdooh Gari, Fai T. Ashgan, Maha Mohsin Al-Quaiti, Adel M. Abuzenadah, Mohammed Al‐Qahtani
Software Mentions: 1
Published: about 10 years ago

10.3390/genes12020141

Characterization of Copy-Number Variations and Possible Candidate Genes in Recurrent Pregnancy Losses
Cited by: 13
Author(s): Yan‐Ran Sheng, Shunyu Hou, Wenting Hu, Chunyan Wei, Yukai Liu, Yuyin Liu, Lu Jiang, Jingjing Xiang, Xiaoxi Sun, Lei Chen, Huiling Wang, Xiao‐Yong Zhu
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12020238

Evolution of the IRF Family in Salmonids
Cited by: 7
Author(s): Thomas C. Clark, Pierre Boudinot, Bertrand Collet
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12030430

Hunting for Familial Parkinson’s Disease Mutations in the Post Genome Era
Cited by: 2
Author(s): Steven Bentley, Ilaria Guella, Holly E. Sherman, Hannah M. Neuendorf, Alex M. Sykes, Javed Fowdar, Peter A. Silburn, Stephen A. Wood, Matthew J. Farrer, George D. Mellick
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12040470

Emerging Role of ODC1 in Neurodevelopmental Disorders and Brain Development
Cited by: 13
Author(s): Jeremy W. Prokop, Caleb Bupp, Austin Frisch, Stephanie M. Bilinovich, Daniel B. Campbell, Daniel Vogt, Chad R. Schultz, Katie Uhl, Elizabeth VanSickle, Surender Rajasekaran, André S. Bachmann
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12050669

Investigating Olfactory Gene Variation and Odour Identification in Older Adults
Cited by: 4
Author(s): Siddharth Raj, Anbupalam Thalamuthu, Nicola J. Armstrong, Margaret J. Wright, John B. Kwok, Julian N. Trollor, David Ames, Peter R. Schofield, Henry Brodaty, Perminder S. Sachdev, Karen A. Mather
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12060877

Cytogenetic and Array-CGH Characterization of a Simple Case of Reciprocal t(3;10) Translocation Reveals a Hidden Deletion at 5q12
Cited by: 0
Author(s): Angelo Cellamare, Nicoletta Coccaro, Maria Cristina Nuzzi, Paola Casieri, Marilina Tampoia, Flavia Angela Maria Maggiolini, Mattia Gentile, Romina Ficarella, Emanuela Ponzi, Maria Rosa Conserva, Laura Cardarelli, Annunziata Panarese, Francesca Antonacci, Antonia Gesario
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12060805

Generation and Genetic Correction of USH2A c.2299delG Mutation in Patient-Derived Induced Pluripotent Stem Cells
Cited by: 13
Author(s): Xuezhong Liu, Justin Lillywhite, Wenliang Zhu, Zaohua Huang, Andrew E. Clark, Nicholas C. Gosstola, Colin T. Maguire, Derek M. Dykxhoorn, Zheng-Yi Chen, Jun Yang
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12060822

Novel Structural Variation and Evolutionary Characteristics of Chloroplast tRNA in Gossypium Plants
Cited by: 6
Author(s): Tingting Zhang, Yang Yang, Xiaoyu Song, Xinyu Gao, Xianliang Zhang, Junjie Zhao, Kehai Zhou, Chun-Chao Zhao, Wei Li, Daigang Yang, Xiongfeng Ma, Zhong-Hu Li
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12081284

Development and Evaluation of the Ancestry Informative Marker Panel of the VISAGE Basic Tool
Cited by: 18
Author(s): M. de la Puente, Jorge Ruiz-Ramírez, A. Ambroa-Conde, Catarina Xavier, Jacobo Pardo‐Seco, José Antonio Álvarez‐Dios, Ana Freire-Aradas, Ana Mosquera-Miguel, T.E. Gross, Elaine Y.Y. Cheung, Wojciech Branicki, Michael Nothnagel, Walther Parson, Peter M. Schneider, Manfred Kayser, Ángel Carracedo, Marı́a Victoria Lareu, Christopher Phillips
Software Mentions: 1
Published: about 5 years ago

10.3390/genes12081111

Molecular Characterization of Choroideremia-Associated Deletions Reveals an Unexpected Regulation of CHM Gene Transcription
Cited by: 2
Author(s): Tiziana Fioretti, Valentina Di Iorio, Barbara Lombardo, Francesca De Falco, Armando Cevenini, Fabio Cattaneo, Francesco Testa, Lucio Pastore, Francesca Simonelli, Gabriella Esposito
Software Mentions: 1
Published: about 5 years ago

10.3390/genes12081140

Multiple Acyl-CoA Dehydrogenase Deficiency with Variable Presentation Due to a Homozygous Mutation in a Bedouin Tribe
Cited by: 1
Author(s): Orna Staretz‐Chacham, Shirly Amar, Shlomo Almashanu, Ben Pode‐Shakked, Ann Saada, Ohad Wormser, Eli Hershkovitz
Software Mentions: 1
Published: about 5 years ago

10.1074/mcp.RA117.000155

Detection of Proteome Diversity Resulted from Alternative Splicing is Limited by Trypsin Cleavage Specificity
Cited by: 68
Author(s): Xiaojing Wang, Simona G. Codreanu, Bo Wen, Kai Li, Matthew Chambers, D.C. Liebler, Bing Zhang
Software Mentions: 1
Published: over 8 years ago

10.1002/gcc.21943

The miR‐17‐92 cluster and its target THBS1 are differentially expressed in angiosarcomas dependent on MYC amplification
Cited by: 93
Author(s): Antoîne Italiano, Rachael Thomas, Matthew Breen, Lei Zhang, Aimeé M. Crago, Samuel Singer, Raya Khanin, Robert G. Maki, Aleksandra Mihailović, Markus Hafner, Tom Tuschl, Cristina R. Antonescu
Software Mentions: 1
Published: over 14 years ago

10.1002/dvg.22008

From expression cloning to gene modeling: The development ofXenopusgene sequence resources
Cited by: 19
Author(s): Michael J. Gilchrist
Software Mentions: 1
Published: over 14 years ago

10.1590/1678-4685-GMB-2018-0173

Integrated analysis of the critical region 5p15.3–p15.2 associated with cri-du-chat syndrome
Cited by: 13
Author(s): Thiago Corrêa, Bruno César Feltes, Mariluce Riegel
Software Mentions: 1
Published: over 7 years ago

10.4061/2011/976398

Application of Microarray-Based Comparative Genomic Hybridization in Prenatal and Postnatal Settings: Three Case Reports
Cited by: 5
Author(s): Jing Liu, François Bernier, Julie Lauzon, R. Brian Lowry, Judy Chernos
Software Mentions: 1
Published: about 15 years ago

10.1186/gb-2006-7-s1-s12

Cited by: 507
Author(s): Danielle Thierry-Mieg, Jean Thierry‐Mieg
Software Mentions: 1
Published: over 20 years ago

10.1186/gb-2007-8-3-r41

A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome
Cited by: 97
Author(s): Kerrin S. Small, Michael Brudno, M. Manuela Hill, Arend Sidow
Software Mentions: 1
Published: over 19 years ago

10.1186/gb-2007-8-7-r129

FlyMine: an integrated database for Drosophila and Anopheles genomics
Cited by: 345
Author(s): Rachel Lyne, Richard J. Smith, Kim Rutherford, Matthew Wakeling, Andrew Varley, Francois Guillier, Hilde Janssens, Wenyan Ji, P.G. McLaren, Philip North, Rana Debashis, T. V. Riley, Julie Sullivan, Xavier Watkins, Mark Woodbridge, Kathryn S. Lilley, Steven Russell, Michael Ashburner, Kenji Mizuguchi, Gos Micklem
Software Mentions: 1
Published: over 19 years ago

10.1186/gb-2007-8-7-r152

Using comparative genomics to reorder the human genome sequence into a virtual sheep genome
Cited by: 84
Author(s): Brian P. Dalrymple, Ewen F. Kirkness, Mikhail Nefedov, Sean McWilliam, Abhirami Ratnakumar, Wes Barris, Shaying Zhao, Jyoti Shetty, J F Maddox, Margaret O'Grady, F. W. Nicholas, A. M. Crawford, Ted Smith, Pieter J. de Jong, John C. McEwan, V. H. Oddy, Noelle E. Cockett
Software Mentions: 1
Published: over 19 years ago

10.1186/gb-2008-9-2-r34

Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes
Cited by: 88
Author(s): Pär G. Engström, David Fredman, Boris Lenhard
Software Mentions: 1
Published: over 18 years ago

10.1186/gb-2008-9-2-r37

Sequence context affects the rate of short insertions and deletions in flies and primates
Cited by: 47
Author(s): Amos Tanay, Eric D. Siggia
Software Mentions: 1
Published: over 18 years ago

10.1186/gb-2007-8-8-r167

Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila
Cited by: 58
Author(s): Boris Adryan, Gertrud Woerfel, Ian Birch-Machin, Shan Gao, Marie Quick, Lisa Meadows, Steven Russell, Robert A. White
Software Mentions: 1
Published: over 19 years ago

10.1186/gb-2008-9-6-r104

Assignment of isochores for all completely sequenced vertebrate genomes using a consensus
Cited by: 15
Author(s): Thorsten Schmidt, Dmitrij Frishman
Software Mentions: 1
Published: over 18 years ago

10.1186/gb-2009-10-2-r14

EpiGRAPH: user-friendly software for statistical analysis and prediction of (epi)genomic data
Cited by: 51
Author(s): Christoph Bock, Konstantin Halachev, Joachim Büch, Thomas Lengauer
Software Mentions: 1
Published: over 17 years ago

10.1186/gb-2009-10-8-r86

Synorth: exploring the evolution of synteny and long-range regulatory interactions in vertebrate genomes
Cited by: 25
Author(s): Xianjun Dong, David Fredman, Boris Lenhard
Software Mentions: 1
Published: over 17 years ago

10.1186/gb-2010-11-7-r70

Contrasting chromatin organization of CpG islands and exons in the human genome
Cited by: 101
Author(s): Jung Kyoon Choi
Software Mentions: 1
Published: over 16 years ago

10.1186/gb-2011-12-9-r86

Mutation discovery in mice by whole exome sequencing
Cited by: 102
Author(s): Heather Fairfield, Griffith J Gilbert, Mary Barter, Rebecca R. Corrigan, Michelle Curtain, Yueming Ding, Mark D’Ascenzo, Daniel J. Gerhardt, Chao He, Wenhui Huang, Todd Richmond, Lucy B. Rowe, Frank J. Probst, David E. Bergstrom, Stephen A. Murray, Carol J. Bult, Joel E. Richardson, Benjamin T. Kile, Ivo Gut, Jörg Hager, Snaevar Sigurðsson, Evan Mauceli, Federica Di Palma, Kerstin Lindblad‐Toh, Michael L. Cunningham, Timothy C. Cox, Monica J. Justice, Mona S. Spector, Scott W. Lowe, Thomas Albert, Leah Rae Donahue, Jeffrey A. Jeddeloh, Jay Shendure
Software Mentions: 1
Published: over 15 years ago

10.1186/gb-2011-12-s1-p3

COSMIC: the catalogue of somatic mutations in cancer
Cited by: 5
Author(s): Nidhi Bindal, Simon Forbes, David Beare, Prasad Gunasekaran, Kenric Leung, Chai Yin Kok, Mingming Jia, Sally Bamford, Charlotte G. Cole, Sari Ward, Jon W. Teague, Michael R. Stratton, Peter J. Campbell, Andrew Futreal
Software Mentions: 1
Published: over 15 years ago

10.1186/gb-2011-12-s1-p24

Identification of functional genetic variants associated with prostate cancer through analysis of genome-wide genetic and epigenetic datasets
Cited by: 0
Author(s): McAnthony Tarway, Wei Tang, Ludmila Prokunina–Olsson
Software Mentions: 1
Published: over 15 years ago

10.1186/gb-2012-13-7-r66

Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation
Cited by: 201
Author(s): Markus Lommer, Michael Specht, Alexandra-Sophie Roy, Lars Kraemer, Reidar Andreson, Magdalena A. Gutowska, Juliane Wolf, Sonja Verena Bergner, Markus B. Schilhabel, Ulrich C. Klostermeier, Robert G. Beiko, Philip Rosenstiel, Michael Hippler, Julie LaRoche
Software Mentions: 1
Published: over 14 years ago

10.1186/gb-2012-13-10-r84

Tissue of origin determines cancer-associated CpG island promoter hypermethylation patterns
Cited by: 141
Author(s): Duncan Sproul, Robert Kitchen, Colm E. Nestor, JM Dixon, Andrew H. Sims, David J. Harrison, Bernard Ramsahoye, Richard R. Meehan
Software Mentions: 1
Published: over 14 years ago

10.1098/rsob.180131

DNA methylation subpatterns at distinct regulatory regions in human early embryos
Cited by: 15
Author(s): Rongsong Luo, Chunling Bai, Lei Yang, Zhong Zheng, Guanghua Su, Guang Gao, Zhuying Wei, Yongchun Zuo, Guangpeng Li
Software Mentions: 1
Published: almost 8 years ago

10.1186/gb-2013-14-5-r45

Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing
Cited by: 115
Author(s): Shivendra Kishore, Andreas Gruber, Dominik J. Jedlinski, Afzal Pasha Syed, Hadi Jorjani, Mihaela Zavolan
Software Mentions: 1
Published: over 13 years ago

10.1186/gb-2013-14-3-r25

Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes
Cited by: 199
Author(s): James P. Reddington, Sara Maria Perricone, Colm E. Nestor, Judith Reichmann, Neil A. Youngson, Masako Suzuki, Diana Reinhardt, Donncha S. Dunican, James Prendergast, Heidi K. Mjoseng, Bernard Ramsahoye, Emma Whitelaw, John M. Greally, Ian R. Adams, Wendy A. Bickmore, Richard R. Meehan
Software Mentions: 1
Published: over 13 years ago

10.1186/gb-2014-15-1-r5

Mammalian conserved ADAR targets comprise only a small fragment of the human editosome
Cited by: 146
Author(s): Yishay Pinto, Haim Y. Cohen, Erez Y. Levanon
Software Mentions: 1
Published: over 12 years ago

10.2174/1874192401711010084

Interpreting the Mechanism of APOE (p.Leu167del) Mutation in the Incidence of Familial Hypercholesterolemia; An In-silico Approach
Cited by: 11
Author(s): Omran M. Rashidi, Fatima Amanullah H.Nazar, Mohamed Nabil Alama, Zuhier Awan
Software Mentions: 1
Published: almost 9 years ago

10.1186/gb-2013-14-7-r79

PARma: identification of microRNA target sites in AGO-PAR-CLIP data
Cited by: 52
Author(s): Florian Erhard, Lars Dölken, Łukasz Jaśkiewicz, Ralf Zimmer
Software Mentions: 1
Published: over 13 years ago

10.1186/s40348-020-00102-8

Nup133 and ERα mediate the differential effects of hyperoxia-induced damage in male and female OPCs
Cited by: 7
Author(s): Donna Elizabeth Sunny, Elke Hammer, Sebastian Strempel, Christy Joseph, Himanshu Manchanda, Till Ittermann, Stephanie Hübner, Frank Ulrich Weiß, Uwe Völker, Matthias Heckmann
Software Mentions: 1
Published: about 6 years ago

10.1186/s13059-015-0672-7

Allele-specific binding of ZFP57 in the epigenetic regulation of imprinted and non-imprinted monoallelic expression
Cited by: 130
Author(s): Ruslan Strogantsev, Felix Krueger, Kazuki Yamazawa, Hui Shi, Poppy A. Gould, Megan Goldman-Roberts, Kirsten McEwen, Bowen Sun, Roger A. Pedersen, Anne C. Ferguson-Smith
Software Mentions: 1
Published: over 11 years ago

10.1186/1750-1172-7-S2-A11

Speeding up research with the Semantic Web
Cited by: 1
Author(s): Marco Roos, Erik Schultes, Barend Mons
Software Mentions: 1
Published: over 14 years ago

10.1007/s11010-021-04103-7

Evidence of synergism among three genetic variants in a patient with LMNA-related lipodystrophy and amyotrophic lateral sclerosis leading to a remarkable nuclear phenotype
Cited by: 3
Author(s): Kathryn Volkening, Sali M.K. Farhan, Jennifer L. Kao, Cheryl Leystra-Lantz, Lee Cyn Ang, Adam D. McIntyre, Jian Wang, Robert A. Hegele, Michael J. Strong
Software Mentions: 1
Published: over 5 years ago

10.1186/s13059-015-0768-0

Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells
Cited by: 175
Author(s): A. Rasim Barutcu, Bryan R. Lajoie, Rachel Patton McCord, Coralee E. Tye, Deli Hong, Terri L. Messier, Gillian Browne, André J. van Wijnen, Jane B. Lian, Janet L. Stein, Job Dekker, Anthony N. Imbalzano
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13059-015-0842-7

High density methylation QTL analysis in human blood via next-generation sequencing of the methylated genomic DNA fraction
Cited by: 106
Author(s): Joseph L. McClay, Andrey A. Shabalin, Mikhail G. Dozmorov, Daniel E. Adkins, Gaurav Kumar, Srilaxmi Nerella, Shaunna L. Clark, Sarah E. Bergen, Christina M. Hultman, Patrik K. E. Magnusson, Patrick F. Sullivan, Karolina A. Åberg, Edwin J. C. G. van den Oord
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13059-016-0876-5

The contribution of Alu exons to the human proteome
Cited by: 36
Author(s): Lan Lin, Peng Jiang, Juw Won Park, Jinkai Wang, Zhi-xiang Lu, Maggie P. Y. Lam, Peipei Ping, Yi Xing
Software Mentions: 1
Published: over 10 years ago

10.1186/s13023-015-0251-8

Rare diseases in ICD11: making rare diseases visible in health information systems through appropriate coding
Cited by: 84
Author(s): Ségolène Aymé, Bertrand Bellet, Ana Rath
Software Mentions: 1
Published: over 11 years ago

10.1186/s13059-017-1185-3

Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions
Cited by: 141
Author(s): John Cole, Neil Robertson, Mohammed Iqbal Rather, John P. Thomson, Tony McBryan, Duncan Sproul, Tina Wang, Claire Brock, William Clark, Trey Ideker, Richard R. Meehan, Richard A. Miller, Holly M. Brown–Borg, Peter D. Adams
Software Mentions: 1
Published: over 9 years ago

10.1186/s13059-017-1226-y

The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci
Cited by: 30
Author(s): Rong Yang, Zhimin Zheng, Qing Chen, Lan Yang, Huan Huang, Daisuke Miki, Wenwu Wu, Liang Zeng, Jun Li, Jin‐Xing Zhou, Joe Ogas, Jian‐Kang Zhu, Xin‐Jian He, Heng Zhang
Software Mentions: 1
Published: over 9 years ago

10.1186/s13059-017-1225-z

Regulatory landscape fusion in rhabdomyosarcoma through interactions between the PAX3 promoter and FOXO1 regulatory elements
Cited by: 21
Author(s): Cristina Vicente-García, Bárbara Villarejo-Balcells, Ibai Irastorza-Azcárate, Silvia Naranjo, Rafael D. Acemel, Juan J. Tena, Peter Rigby, Damien P. Devos, José Luis Gómez-Skármeta, Jaime J. Carvajal
Software Mentions: 1
Published: about 9 years ago

10.1186/gb-2004-6-1-r9

Cited by: 253
Author(s): Frank Desiere, Eric W. Deutsch, Alexey I. Nesvizhskii, Parag Mallick, Nichole L. King, Jimmy K. Eng, Alan Aderem, Rose Boyle, Erich Brunner, Samuel Donohoe, Nelson Fausto, Ernst Hafen, Lee Hood, Michael G. Katze, Kathleen A. Kennedy, Floyd Kregenow, Hookeun Lee, Biaoyang Lin, Dan Martin, Jeffrey A. Ranish, David J. Rawlings, Lawrence E. Samelson, Yuzuru Shiio, Julian D. Watts, Bernd Wollscheid, M. Wright, Wei Yan, Lizhu Yang, Eugene C. Yi, Hui Zhang, Ruedi Aebersold
Software Mentions: 1
Published: over 22 years ago

10.1186/s13059-018-1393-5

The peopling of the last Green Sahara revealed by high-coverage resequencing of trans-Saharan patrilineages
Cited by: 30
Author(s): Eugenia D’Atanasio, Beniamino Trombetta, Maria Di Bonito, Andrea Finocchio, Genny Di Vito, Mara Seghizzi, Rita Romano, Gianluca Russo, Giacomo Maria Paganotti, Elizabeth E. Watson, Alfredo Coppa, Paolo Anagnostou, Jean‐Michel Dugoujon, Pedro Moral, Daniele Sellitto, Andrea Novelletto, Fulvio Cruciani
Software Mentions: 1
Published: over 8 years ago

10.1186/s13059-018-1434-0

Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome
Cited by: 73
Author(s): Luís Zapata, Oriol Pich, Luís Serrano, Fyodor A. Kondrashov, Stephan Ossowski, Martin H. Schaefer
Software Mentions: 1
Published: over 8 years ago

10.1186/s13059-018-1493-2

Cell type-specific CLIP reveals that NOVA regulates cytoskeleton interactions in motoneurons
Cited by: 16
Author(s): Yuan Yuan, Shirley Xie, Jennifer C. Darnell, Andrew J. Darnell, Yuhki Saito, Hemali Phatnani, Elisabeth A. Murphy, Chaolin Zhang, Tom Maniatis, Robert B. Darnell
Software Mentions: 1
Published: about 8 years ago

10.1186/s13059-018-1491-4

Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data
Cited by: 181
Author(s): Michaël Alaux, Jane Rogers, Thomas Letellier, Raphaël Flores, Françoise Alfama, Cyril Pommier, Nacer Mohellibi, Sophie Durand, Erik Kimmel, Célia Michotey, Claire Guerche, Mikaël Loaec, Mathilde Lainé, Delphine Steinbach, Frédéric Choulet, Hélène Rimbert, Philippe Leroy, Nicolas Guilhot, Jérôme Salse, Catherine Feuillet, Etienne Paux, Kellye Eversole, Anne-Françoise Adam-Blondon, Hadi Quesneville
Software Mentions: 1
Published: about 8 years ago

10.1186/s13059-018-1544-8

Reconstruction of avian ancestral karyotypes reveals differences in the evolutionary history of macro- and microchromosomes
Cited by: 40
Author(s): Joana Damas, Jaebum Kim, Marta Farré, Darren K. Griffin, Denis M. Larkin
Software Mentions: 1
Published: almost 8 years ago

10.1016/j.molcel.2015.01.011

BRCA1 Recruitment to Transcriptional Pause Sites Is Required for R-Loop-Driven DNA Damage Repair
Cited by: 342
Author(s): Elodie Hatchi, Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula, Stoil D. Dimitrov, Shailja Pathania, Kristine McKinney, Matthew L. Eaton, M Kellis, Sarah J. Hill, Giovanni Parmigiani, Nick J. Proudfoot, David M. Livingston
Software Mentions: 1
Published: over 11 years ago

10.1186/s13059-019-1889-7

Chromosome-level genome assembly for giant panda provides novel insights into Carnivora chromosome evolution
Cited by: 28
Author(s): Huizhong Fan, Qi Wu, Fuwen Wei, Fengtang Yang, Bee Ling Ng, Yibo Hu
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13059-019-1897-7

PASTMUS: mapping functional elements at single amino acid resolution in human cells
Cited by: 6
Author(s): Xinyi Zhang, Di Yue, Yinan Wang, Yan Zhou, Ying Liu, Yu Qiu, Feng Tian, Ying Yu, Zhuo Zhou, Wensheng Wei
Software Mentions: 1
Published: almost 7 years ago

10.1186/1476-4598-13-120

A novel approach to identify driver genes involved in androgen-independent prostate cancer
Cited by: 44
Author(s): Ellyn N. Schinke, Victor M. Bii, Arun Kumar Nalla, Dustin T. Rae, Laura Tedrick, Gary G. Meadows, Grant D. Trobridge
Software Mentions: 1
Published: over 12 years ago

10.1186/s13059-020-02017-z

ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data
Cited by: 91
Author(s): Egor Dolzhenko, Mark F Bennett, Phillip A. Richmond, Brett Trost, Sai Chen, Joke J.F.A. van Vugt, Charlotte Nguyen, Giuseppe Narzisi, Vladimir G. Gainullin, Andrew M. Gross, Bryan R. Lajoie, Ryan J. Taft, Wyeth W. Wasserman, Stephen W. Scherer, Jan H. Veldink, David Bentley, Ryan K. C. Yuen, Melanie Bahlo, Michael A. Eberle
Software Mentions: 1
Published: over 6 years ago

10.1186/s13059-020-02184-z

Deep sequencing reveals a DAP1 regulatory haplotype that potentiates autoimmunity in systemic lupus erythematosus
Cited by: 7
Author(s): Prithvi Raj, Ran Song, Honglin Zhu, Linley Riediger, Dong Jae Jun, Chao Liang, Carlos Arana, Bo Zhang, Yajing Gao, Benjamin Wakeland, Igor Dozmorov, Jianuan Zhou, Jennifer A. Kelly, Bernard Lauwerys, Joel M. Guthridge, Nancy J. Olsen, Swapan K. Nath, Chandrashekhar Pasare, Nicolai S. C. van Oers, Gary S. Gilkeson, Betty P. Tsao, Patrick M. Gaffney, Peter K. Gregersen, Judith A. James, Xiaoxia Zuo, David R. Karp, Quan Zhen Li, Edward K. Wakeland
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12943-020-01277-4

The PVT1 lncRNA is a novel epigenetic enhancer of MYC, and a promising risk-stratification biomarker in colorectal cancer
Cited by: 51
Author(s): Kunitoshi Shigeyasu, Shusuke Toden, Tomohiro Ozawa, Takatoshi Matsuyama, Takeshi Nagasaka, Toshiaki Ishikawa, Debashis Sahoo, Pradipta Ghosh, Hiroyuki Uetake, Toshiyoshi Fujiwara, Ajay Goel
Software Mentions: 1
Published: almost 6 years ago

10.1186/1756-6606-4-14

Identification of a novel intronic enhancer responsible for the transcriptional regulation of musashi1 in neural stem/progenitor cells
Cited by: 23
Author(s): S. Kawase, Toshio Imai, Chikako Miyauchi-Hara, Kunio Yaguchi, Yoshinori Nishimoto, Shin Ichi Fukami, Yuji Matsuzaki, Atsushi Miyawaki, Shigeyoshi Itohara, Hideyuki Okano
Software Mentions: 1
Published: over 15 years ago

10.1093/gbe/evu139

The Draft Assembly of the Radically Organized Stylonychia lemnae Macronuclear Genome
Cited by: 54
Author(s): Samuel H. Aeschlimann, Franziska Jönsson, Jan Postberg, Nicholas A. Stover, Robert L. Petera, Hans-Joachim Lipps, Mariusz Nowacki, Estienne C. Swart
Software Mentions: 1
Published: about 12 years ago

10.1093/gbe/evv012

The Role of DNA Insertions in Phenotypic Differentiation between Humans and Other Primates
Cited by: 4
Author(s): Elizabeth Hellen, Andrew D. Kern
Software Mentions: 1
Published: over 11 years ago

10.1093/gbe/evv142

A Genome-Wide Landscape of Retrocopies in Primate Genomes
Cited by: 44
Author(s): Fábio C. P. Navarro, Pedro A. F. Galante
Software Mentions: 1
Published: about 11 years ago

10.1093/gbe/evv161

Comparative Genomics of Environmental and ClinicalStenotrophomonas maltophiliaStrains with Different Antibiotic Resistance Profiles
Cited by: 72
Author(s): Benjamin Youenou, Sabine Favre-Bonté, Josselin Bodilis, Elisabeth Brothier, Audrey Dubost, Daniel Müller, Sylvie Nazaret
Software Mentions: 1
Published: about 11 years ago

10.1093/gbe/evx237

The Diversity of REcent and Ancient huMan (DREAM): A New Microarray for Genetic Anthropology and Genealogy, Forensics, and Personalized Medicine
Cited by: 9
Author(s): Eran Elhaik, Leeban Yusuf, Ainan I J Anderson, Mehdi Pirooznia, Dimitrios Arnellos, Gregory Vilshansky, Gunes Ercal, Yontao Lu, Teresa A. Webster, Michael L. Baird, Umberto Esposito
Software Mentions: 1
Published: almost 9 years ago

10.1093/gbe/evy199

Turning Vice into Virtue: Using Batch-Effects to Detect Errors in Large Genomic Data Sets
Cited by: 7
Author(s): Fabrizio Mafessoni, Rashmi B. Prasad, Leif Groop, Ola Hansson, Kay Prüfer
Software Mentions: 1
Published: almost 8 years ago

10.1093/gbe/evz228

A Nearly Complete Genome of Ciona intestinalis Type A (C. robusta) Reveals the Contribution of Inversion to Chromosomal Evolution in the Genus Ciona
Cited by: 69
Author(s): Yutaka Satou, Ryohei Nakamura, Dejie Yu, Reiko Yoshida, Mayuko Hamada, Manabu Fujie, Kanako Hisata, Hiroyuki Takeda, Noriyuki Satoh
Software Mentions: 1
Published: almost 7 years ago

10.1093/gbe/evz254

Genome Assembly of the Dogface Butterfly Zerene cesonia
Cited by: 7
Author(s): Luis Rodriguez-Caro, Jennifer Fenner, Caleb Benson, Steven M. Van Belleghem, Brian A. Counterman
Software Mentions: 1
Published: almost 7 years ago

10.1093/gbe/evaa045

Weak Correlation between Nucleotide Variation and Recombination Rate across the House Mouse Genome
Cited by: 9
Author(s): Michael Emmett Kartje, Peicheng Jing, Bret A. Payseur
Software Mentions: 1
Published: over 6 years ago

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