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10.1093/molbev/msv172

hapbin: An Efficient Program for Performing Haplotype-Based Scans for Positive Selection in Large Genomic Datasets: Fig. 1.
Cited by: 55
Author(s): Colin MacLean, Neil Chue Hong, James Prendergast
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pgen.1000246

Mutations in the SLC2A9 Gene Cause Hyperuricosuria and Hyperuricemia in the Dog
Cited by: 95
Author(s): Danika L. Bannasch, Noa Safra, Amy Young, Nili Karmi, R. S. Schaible, Gerald V. Ling
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2148-5-22

Cited by: 21
Author(s): Michael E. Bradley, Steven A. Benner
Software Mentions: 1
Published: over 20 years ago

10.1371/journal.pgen.1003622

Comparative Anatomy of Chromosomal Domains with Imprinted and Non-Imprinted Allele-Specific DNA Methylation
Cited by: 39
Author(s): Anupam Paliwal, Alexis M. Temkin, Kristi Kerkel, Alexander Yale, Iveta Yotova, Natalia Drost, Simon Lax, Chia-Ling Nhan-Chang, Charles A. Powell, Alain C. Borczuk, Abraham Aviv, Ronald J. Wapner, Xiaowei Chen, Péter L. Nagy, Nicholas J. Schork, Catherine Do, Ali Torkamani, Benjamin Tycko
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12862-015-0437-7

Evolution of the unspliced transcriptome
Cited by: 7
Author(s): Jan Engelhardt, Peter F. Stadler
Software Mentions: 1
Published: almost 10 years ago

10.1186/2040-2392-4-8

Whole-genome sequencing in an autism multiplex family
Cited by: 73
Author(s): Lingling Shi, Xu Zhang, Ryan Golhar, F. George Otieno, Mingze He, Cuiping Hou, Cecilia Kim, Brendan J. Keating, Gholson J. Lyon, Kai Wang, Hákon Hákonarson
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1002317

Identification of Widespread Ultra-Edited Human RNAs
Cited by: 72
Author(s): Shai Carmi, Itamar Borukhov, Erez Y. Levanon
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13229-017-0171-7

Critical region within 22q11.2 linked to higher rate of autism spectrum disorder
Cited by: 31
Author(s): Caitlin C. Clements, Tara L. Wenger, Alisa Zoltowski, Jennifer R. Bertollo, Judith S. Miller, Ashley de Marchena, Lauren Mitteer, John C. Carey, Benjamin E. Yerys, Elaine H. Zackai, Beverly S. Emanuel, Donna M. McDonald‐McGinn
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep20179

SMARCAD1 is an ATP-dependent stimulator of nucleosomal H2A acetylation via CBP, resulting in transcriptional regulation
Cited by: 24
Author(s): Masamichi Doiguchi, Takeya Nakagawa, Yuko Imamura, Mitsuhiro Yoneda, Miki Higashi, Kazuishi Kubota, Satoshi Yamashita, Hiroshi Asahara, Midori Iida, Satoshi Fujii, Tsuyoshi Ikura, Ziying Liu, Tulip Nandu, W. Lee Kraus, Hitoshi Ueda, Takashi Ito
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.0010035

Pervasive Adaptive Evolution in Primate Seminal Proteins
Cited by: 160
Author(s): Nathan L. Clark, Willie J. Swanson
Software Mentions: 1
Published: almost 20 years ago

10.1371/journal.pgen.1005781

Extensive Recombination of a Yeast Diploid Hybrid through Meiotic Reversion
Cited by: 62
Author(s): Raphaëlle Laureau, Sophie Loeillet, F. Salinas, Anders Bergström, Patricia Legoix-Né, Gianni Liti, Alain Nicolas
Software Mentions: 1
Published: over 9 years ago

10.1038/srep21579

Human Vascular Microphysiological System for in vitro Drug Screening
Cited by: 72
Author(s): Cristina E. Fernández, Ringo Yen, Samantha M. Perez, Hillary W. Bedell, Thomas J. Povsic, William M. Reichert, George A. Truskey
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.0030134

A Screen for Suppressors of Gross Chromosomal Rearrangements Identifies a Conserved Role for PLP in Preventing DNA Lesions
Cited by: 56
Author(s): Pamela Kanellis, Mark Gagliardi, Judit P. Banáth, Rachel K. Szilard, Shinichiro Nakada, Sarah Galicia, Frédéric D. Sweeney, Diane C. Cabelof, Peggy L. Olive, Daniel Durocher
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12862-020-01624-5

The amylase gene cluster in house mice (Mus musculus) was subject to repeated introgression including the rescue of a pseudogene
Cited by: 2
Author(s): Miriam Linnenbrink, Kristian K. Ullrich, Ellen McConnell, Diethard Tautz
Software Mentions: 1
Published: about 5 years ago

10.1186/2040-2392-5-5

Identification of rare DNA sequence variants in high-risk autism families and their prevalence in a large case/control population
Cited by: 32
Author(s): Nori Matsunami, Charles H. Hensel, Lisa Baird, Jeff Stevens, Brith Otterud, Tami Leppert, Tena Varvil, Dexter Hadley, Joseph T. Glessner, Renata Pellegrino, Cecilia Kim, Kelly Thomas, Fengxiang Wang, F. George Otieno, Karen S. Ho, G. Bryce Christensen, Dongying Li, Rytis Prekeris, Christophe G Lambert, Hákon Hákonarson, M. Leppert
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pgen.1003062

Loss of the DNA Methyltransferase MET1 Induces H3K9 Hypermethylation at PcG Target Genes and Redistribution of H3K27 Trimethylation to Transposons in Arabidopsis thaliana
Cited by: 139
Author(s): Angélique Deleris, Hume Stroud, Yana V. Bernatavichute, Elizabeth L. Johnson, Gregor Klein, Daniel Schubert, Steven E. Jacobsen
Software Mentions: 1
Published: over 12 years ago

10.1186/s13100-020-00222-y

LINE-1 ORF1p does not determine substrate preference for human/orangutan SVA and gibbon LAVA
Cited by: 1
Author(s): Annette Damert
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pntd.0000272

Conservation and Variability of Dengue Virus Proteins: Implications for Vaccine Design
Cited by: 76
Author(s): Mohammad Asif Khan, Olivo Miotto, Eduardo J. M. Nascimento, Kellathur N. Srinivasan, A. T. Heiny, Guanglan Zhang, Ernesto T. A. Marques, Tin Wee Tan, Vladimir Brusic, Jérôme Salmon, J. Thomas August
Software Mentions: 1
Published: almost 17 years ago

10.1038/srep27272

Purifying selection shapes the coincident SNP distribution of primate coding sequences
Cited by: 5
Author(s): Chia-Ying Chen, Li-Yuan Hung, Chan-Shuo Wu, Trees‐Juen Chuang
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pntd.0006429

Microdeletion on chromosome 8p23.1 in a familial form of severe Buruli ulcer
Cited by: 11
Author(s): Quentin B. Vincent, Aziz Belkadi, C. Fayard, Estelle Marion, Ambroise Adeye, Marie-Françoise Ardant, Christian Johnson, Didier Agossadou, Lazaro Lorenzo, Julien Guergnon, Christine Bôle‐Feysot, Jérémy Manry, Patrick Nitschké, Ioannis Théodorou, Jean‐Laurent Casanova, Laurent Marsollier, Annick Chauty, Laurent Abel, Alexandre Alcaïs
Software Mentions: 1
Published: over 7 years ago

10.1186/s12967-018-1708-z

Mutational and phenotypic spectrum of OTOF-related auditory neuropathy in Koreans: eliciting reciprocal interaction between bench and clinics
Cited by: 17
Author(s): Bong Jik Kim, Jeong Hun Jang, Jin Hee Han, Hye Rim Park, Doo Yi Oh, Seungmin Lee, Min Young Kim, Ah Reum Kim, Chung Lee, Nayoung K.D. Kim, Woong-Yang Park, Yun Hoon Choung, Byung Yoon Choi
Software Mentions: 1
Published: over 6 years ago

10.1186/s13100-018-0135-2

Phylogenomic analysis reveals splicing as a mechanism of parallel evolution of non-canonical SVAs in hominine primates
Cited by: 6
Author(s): Annette Damert
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0150101

MECP2 Duplication Syndrome: Evidence of Enhanced Oxidative Stress. A Comparison with Rett Syndrome
Cited by: 21
Author(s): Cinzia Signorini, Claudio De Felice, Silvia Leoncini, Rikke S. Møller, Gloria Zollo, Sabrina Buoni, Alessio Cortelazzo, Roberto Guerranti, Thierry Durand, Lucia Ciccoli, Maurizio D’Esposito, Kirstine Ravn, Joussef Hayek
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0006267

Hes1 Is Expressed in the Second Heart Field and Is Required for Outflow Tract Development
Cited by: 79
Author(s): Francesca Rochais, Mathieu Dandonneau, Karim Mesbah, Thérèse Jarry, Marie-Genevı̀eve Mattei, Robert G. Kelly
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0076771

Hybrid Adeno-Associated Viral Vectors Utilizing Transposase-Mediated Somatic Integration for Stable Transgene Expression in Human Cells
Cited by: 27
Author(s): Wenli Zhang, Manish Solanki, Nadine Müther, Melanie Ebel, Jichang Wang, Chuanbo Sun, Zsuzsanna Izsvák, Anja Ehrhardt
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0078913

SVD Identifies Transcript Length Distribution Functions from DNA Microarray Data and Reveals Evolutionary Forces Globally Affecting GBM Metabolism
Cited by: 13
Author(s): Nicolas M. Bertagnolli, Justin A. Drake, Jason M. Tennessen, Orly Alter
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0180732

The endogenous transposable element Tgm9 is suitable for generating knockout mutants for functional analyses of soybean genes and genetic improvement in soybean
Cited by: 7
Author(s): Devinder Sandhu, Jayadri Sekhar Ghosh, Callie Johnson, Jordan Baumbach, Eric Baumert, Tyler Cina, David Grant, Reid G. Palmer, Madan K. Bhattacharyya
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0163885

High-Resolution 4C Reveals Rapid p53-Dependent Chromatin Reorganization of the CDKN1A Locus in Response to Stress
Cited by: 5
Author(s): Jean-François Millau, Patrick J. Wijchers, Luc Gaudreau
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep27680

Comparative transcriptomic analysis of human and Drosophila extracellular vesicles
Cited by: 41
Author(s): Fabio Alexis Lefebvre, Louis Philip Benoit Bouvrette, Lilyanne Perras, Alexis Blanchet-Cohen, Delphine Garnier, Janusz Rak, Éric Lécuyer
Software Mentions: 1
Published: about 9 years ago

10.1186/1759-8753-3-15

Cell type-specific termination of transcription by transposable element sequences
Cited by: 21
Author(s): Andrew B. Conley, I. King Jordan
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0033280

Genome Stability of Lyme Disease Spirochetes: Comparative Genomics of Borrelia burgdorferi Plasmids
Cited by: 144
Author(s): Sherwood Casjens, Emmanuel F. Mongodin, Wei Qiu, Benjamin J. Luft, Steven E. Schutzer, Eddie B. Gilcrease, Wai Mun Huang, Marija Vujadinovic, John Aron, Levy C. Vargas, Sam Freeman, Diana Radune, Janice Weidman, George Dimitrov, Hoda Khouri, Julia E. Sosa, Rebecca Halpin, John J. Dunn, Claire M. Fraser
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2148-13-19

Impact of constitutional copy number variants on biological pathway evolution
Cited by: 14
Author(s): Maria Poptsova, Samprit Banerjee, Ömer Gökçümen, Mark A. Rubin, Francesca Demichelis
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0162236

Opportunities and Challenges in Developing a Cohort of Patients with Type 2 Diabetes Mellitus Using Electronic Primary Care Data
Cited by: 4
Author(s): Preeti Datta-Nemdharry, A. G. Thomson, Julie Beynon
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0190800

MAFB is dispensable for the fetal testis morphogenesis and the maintenance of spermatogenesis in adult mice
Cited by: 12
Author(s): Hossam H. Shawki, Hisashi Oishi, Toshiaki Usui, Yu Kitadate, Walaa A. Basha, Ahmed M. Abdellatif, Kazunori Hasegawa, Risa Okada, Keiichi Mochida, Hany A. El‐Shemy, Masafumi Muratani, Atsuo Ogura, Shosei Yoshida, Satoru Takahashi
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.13746

An annotated list of bivalent chromatin regions in human ES cells: a new tool for cancer epigenetic research
Cited by: 41
Author(s): Franck Court, Philippe Arnaud
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0018871

A Suspected Parasite Spill-Back of Two Novel Myxidium spp. (Myxosporea) Causing Disease in Australian Endemic Frogs Found in the Invasive Cane Toad
Cited by: 50
Author(s): Ashlie Hartigan, Ivan Fiala, Iva Dyková, Miloslav Jirků, Ben Okimoto, Karrie Rose, David N. Phalen, Jan Šlapeta
Software Mentions: 1
Published: over 14 years ago

10.17912/micropub.biology.000339

Software Mentions: 1

10.1371/journal.pone.0117093

Signatures of Natural Selection at the FTO (Fat Mass and Obesity Associated) Locus in Human Populations
Cited by: 10
Author(s): Xuanshi Liu, Kerstin Weidle, Kristin Schröck, Anke Tönjes, Dorit Schleinitz, Jana Breitfeld, Michael Stümvoll, Yvonne Böttcher, Torsten Schöneberg, Peter Kovacs
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0091940

NTRK1 Fusion in Glioblastoma Multiforme
Cited by: 76
Author(s): Jin‐Kuk Kim, Yeri Lee, Hee Jin Cho, Young‐Eun Lee, Jaeyeol An, Gye-Hyun Cho, Young‐Hyeh Ko, Kyeung Min Joo, Do‐Hyun Nam
Software Mentions: 1
Published: over 11 years ago

10.1186/2042-5783-2-9

Bioinformatic identification of Mycobacterium tuberculosis proteins likely to target host cell mitochondria: virulence factors?
Cited by: 21
Author(s): María Maximina Bertha Moreno-Altamirano, Iris Selene Paredes-González, Clara Espitia, Mauricio Santiago-Maldonado, Rogelio Hernández-Pando, Francisco Javier Sánchez‐García
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0004466

Loss of yata, a Novel Gene Regulating the Subcellular Localization of APPL, Induces Deterioration of Neural Tissues and Lifespan Shortening
Cited by: 18
Author(s): Masaki Sone, Akio Uchida, Ayumi Komatsu, Emiko Suzuki, Ikue Ibuki, Megumi Asada, Hiroki Shiwaku, Tomohide Tamura, Mikio Hoshino, Hitoshi Okazawa, Yo‐ichi Nabeshima
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0096430

Morphology and Histochemistry of the Aesthetasc-Associated Epidermal Glands in Terrestrial Hermit Crabs of the Genus Coenobita (Decapoda: Paguroidea)
Cited by: 17
Author(s): Oksana Tuchina, Katrin Groh, Giovanni Paolo Talarico, Carsten H. G. Müller, Natalie Wielsch, Yvonne Hupfer, Aleš Svatoš, Ewald Große-Wilde, Bill S. Hansson
Software Mentions: 1
Published: about 11 years ago

10.1186/1475-2859-8-53

Open access to sequence: Browsing the Pichia pastoris genome
Cited by: 54
Author(s): Diethard Mattanovich, Nico Callewaert, Pierre Rouzé, Yao‐Cheng Lin, Alexandra B. Graf, Andréas Redl, Petra Tiels, Brigitte Gasser, Kristof De Schutter
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0098837

Patterns of Variation at Ustilago maydis Virulence Clusters 2A and 19A Largely Reflect the Demographic History of Its Populations
Cited by: 7
Author(s): Ronny Kellner, Christian Hanschke, Dominik Begerow
Software Mentions: 1
Published: about 11 years ago

10.1111/1751-7915.12135

Microbial strain collections and information
Cited by: 3
Author(s): Lawrence P. Wackett
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0220512

Whole genome sequencing and rare variant analysis in essential tremor families
Cited by: 28
Author(s): Zagaa Odgerel, Shilpa Sonti, Nora Hernández, Jemin Park, Ruth Ottman, Elan D. Louis, Lorraine N. Clark
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0136929

Genome-Wide Identification and Expression of Xenopus F-Box Family of Proteins
Cited by: 3
Author(s): Banu Saritas-Yildirim, Hannah A. Pliner, Angelica Ochoa, Elena M. Silva
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0120256

Retroviruses Hijack Chromatin Loops to Drive Oncogene Expression and Highlight the Chromatin Architecture around Proto-Oncogenic Loci
Cited by: 4
Author(s): Jillian M. Pattison, Jason Wright, Michael Cole
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0003726

MicroRNA Expression Patterns and Function in Endodermal Differentiation of Human Embryonic Stem Cells
Cited by: 107
Author(s): Galit Tzur, Asaf Levy, Eti Meiri, Omer Barad, Yael Spector, Zvi Bentwich, Lina Mizrahi, Mark Katzenellenbogen, Etti Ben-Shushan, Benjamin Reubinoff, Eithan Galun
Software Mentions: 1
Published: over 16 years ago

10.1038/srep33388

Pits, a protein interacting with Ttk69 and Sin3A, has links to histone deacetylation
Cited by: 8
Author(s): Gwo-Jen Liaw
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep32713

ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis
Cited by: 45
Author(s): Amit Gupta, Karambir Kaur, Abhishek Rajput, Sandeep Kumar Dhanda, Manika Sehgal, Mohammad Shoaib Khan, Isha Monga, Showkat Ahmad Dar, Sandeep Singh, Gandharva Nagpal, Salman Sadullah Usmani, Ashwani Kumar Thakur, Guneet Kaur, Shivangi Sharma, A. Bhardwaj, Abid Qureshi, Gajendra P. S. Raghava, Manoj Kumar
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0126403

The Mechanism of Environmental Endocrine Disruptors (DEHP) Induces Epigenetic Transgenerational Inheritance of Cryptorchidism
Cited by: 44
Author(s): Jinjun Chen, Shengde Wu, Sheng Wen, Lianju Shen, Jinpu Peng, Chao Yan, Xining Cao, Yue Zhou, Long Chen, Tao Lin, Dalin He, Yi Hua, Guanghui Wei
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.13720

Design and implementation of a mobile system for lung cancer patient follow-up in China and initial report of the ongoing patient registry
Cited by: 10
Author(s): Xiangyun Ye, Wei Hua Jia, Ziming Li, Xiaomin Niu, Jiemin Wang, Yunqin Chen, Zong-Ming Guo, Shun Lü
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0092815

Association of DSC3 mRNA Down-Regulation in Prostate Cancer with Promoter Hypermethylation and Poor Prognosis
Cited by: 18
Author(s): Jun Pan, Yu Chen, Chengqiang Mo, Daohu Wang, Junxing Chen, Xiaopeng Mao, Shengjie Guo, Sian Liu, Shaopeng Qiu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0171300

Identification of the early and late responder genes during the generation of induced pluripotent stem cells from mouse fibroblasts
Cited by: 3
Author(s): Jihwan Park, Yoo Wook Kwon, Seokjin Ham, Chang Pyo Hong, Seong-Hye Seo, Moon Kyung Choe, So I. Shin, Choon Soo Lee, Hyo Soo Kim, Tae-Young Roh
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0048732

Genome-Wide Identification of Copy Number Variations in Chinese Holstein
Cited by: 46
Author(s): Li Jiang, Jicai Jiang, Jiying Wang, Xiangdong Ding, J. Liu, Qin Zhang
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0004047

Chromosomal Inversions between Human and Chimpanzee Lineages Caused by Retrotransposons
Cited by: 83
Author(s): Jungnam Lee, Kyudong Han, Thomas J. Meyer, Heui-Soo Kim, Mark A. Batzer
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0111721

Tempo and Mode of Gene Duplication in Mammalian Ribosomal Protein Evolution
Cited by: 13
Author(s): Asav P. Dharia, Ajay Obla, Matthew D. Gajdosik, Amanda Simon, Craig E. Nelson
Software Mentions: 1
Published: over 10 years ago

10.1038/srep36491

ISL1-based LIM complexes control Slit2 transcription in developing cranial motor neurons
Cited by: 15
Author(s): Kyung Tai Kim, Namhee Kim, Hwan Ki Kim, Hojae Lee, Hannah N. Gruner, Péter Gergics, Chungoo Park, Grant S. Mastick, Hae Chul Park, Mi Ryoung Song
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0008960

SOX2 Is an Oncogene Activated by Recurrent 3q26.3 Amplifications in Human Lung Squamous Cell Carcinomas
Cited by: 272
Author(s): Thomas Hussenet, Soraya Dali, Julien Exinger, Ben Monga, Bernard Jost, Doulaye Dembelé, Nadine Martinet, Christelle Thibault, Joerg Huelsken, Élisabeth Brambilla, Stanislas du Manoir
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0040637

An Effort to Use Human-Based Exome Capture Methods to Analyze Chimpanzee and Macaque Exomes
Cited by: 23
Author(s): Xin Jin, Mingze He, Betsy Ferguson, Yuhuan Meng, Limei Ouyang, Jingjing Ren, Thomas Mailund, Fei Sun, Liangdan Sun, Juan Shen, Min Zhuo, Li Song, Jufang Wang, Fei Ling, Yuqi Zhu, Christina Hvilsom, Hans R. Siegismund, Xiaoming Liu, Zhuolin Gong, Fang Ji, Xinzhong Wang, Boqing Liu, Yu Zhang, Jingli Hou, Jing Wang, Hua Zhao, Yanyi Wang, Xiaodong Fang, Guojie Zhang, Jian Wang, Xuejun Zhang, Mikkel H. Schierup, Hongli Du, Jun Wang, Xiaoning Wang
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0092707

Epigenetic Silencing of TFPI-2 in Canine Diffuse Large B-Cell Lymphoma
Cited by: 32
Author(s): Serena Ferraresso, Silvia Bresolin, Arianna Aricò, S. Comazzi, Maria Elena Gelain, Fulvio Riondato, Luca Bargelloni, Laura Marconato, Geertruy te Kronnie, Luca Aresu
Software Mentions: 1
Published: over 11 years ago

10.3390/metabo11040238

A Medicago truncatula Metabolite Atlas Enables the Visualization of Differential Accumulation of Metabolites in Root Tissues
Cited by: 2
Author(s): Clayton Kranawetter, Shuai Zeng, Trupti Joshi, Lloyd W. Sumner
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0118737

SNAP23 Regulates Endothelial Exocytosis of von Willebrand Factor
Cited by: 33
Author(s): Qinglin Zhu, Munekazu Yamakuchi, Charles J. Lowenstein
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12862-015-0528-5

Selective sweeps versus introgression - population genetic dynamics of the murine leukemia virus receptor Xpr1 in wild populations of the house mouse (Mus musculus)
Cited by: 9
Author(s): Natascha Hasenkamp, Terry Solomon, Diethard Tautz
Software Mentions: 1
Published: over 9 years ago

10.1038/srep39447

Lotus Base: An integrated information portal for the model legume Lotus japonicus
Cited by: 105
Author(s): Terry Mun, Asger Bachmann, Vikas Gupta, Jens Stougaard, Stig Uggerhøj Andersen
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0006458

Punicic Acid a Conjugated Linolenic Acid Inhibits TNFα-Induced Neutrophil Hyperactivation and Protects from Experimental Colon Inflammation in Rats
Cited by: 105
Author(s): Tarek Boussetta, Houssam Raad, Philippe Lettéron, Marie‐Anne Gougerot‐Pocidalo, Jean‐Claude Marie, Fathi Driss, Jamel El-Benna
Software Mentions: 1
Published: about 16 years ago

10.3390/medsci7020016

Integrated FISH, Karyotyping and aCGH Analyses for Effective Prenatal Diagnosis of Common Aneuploidies and Other Cytogenomic Abnormalities
Cited by: 7
Author(s): Hongyan Chai, Autumn DiAdamo, Brittany Grommisch, Jennifer Boyle, Katherine Amato, Dongmei Wang, Jiadi Wen, Peining Li
Software Mentions: 1
Published: over 6 years ago

10.1038/srep39848

Microvasculature remodeling in the mouse lower gut during inflammaging
Cited by: 20
Author(s): Jae-Ho Jeong, KwangSoo Kim, Dukhwan Lim, Kun-Hee Kim, Hyung-Seok Kim, Sungsu Lee, Joo‐Hye Song, Byoung-Gon Moon, Hyon E. Choy, Sang Chul Park
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-04657-x

Genetic targeting and anatomical registration of neuronal populations in the zebrafish brain with a new set of BAC transgenic tools
Cited by: 56
Author(s): Dominique Förster, Irene Arnold-Ammer, Eva Laurell, Alison J. Barker, António M. Fernandes, Karin Finger‐Baier, Alessandro Filosa, Thomas O. Helmbrecht, Yvonne Kölsch, Enrico Kühn, Estuardo Robles, Krasimir Slanchev, Tod R. Thiele, Herwig Baier, Fumi Kubo
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0122797

Identification of Novel Loci Associated with Gastrointestinal Parasite Resistance in a Red Maasai x Dorper Backcross Population
Cited by: 56
Author(s): Magda Vieira Benavides, Tad S. Sonstegard, Stephen J. Kemp, J. M. Mugambi, John P. Gibson, R.L. Baker, Olivier Hanotte, Karen Marshall, C. P. van Tassell
Software Mentions: 1
Published: over 10 years ago

10.1007/s00335-015-9571-1

A unified gene catalog for the laboratory mouse reference genome
Cited by: 16
Author(s): Yunxia Zhu, Joel E. Richardson, Paul Hale, Richard M. Baldarelli, Deborah J. Reed, Jill M Recla, R. Sinclair, T. B. K. Reddy, Carol J. Bult
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0028787

Cooperative Genome-Wide Analysis Shows Increased Homozygosity in Early Onset Parkinson's Disease
Cited by: 22
Author(s): Javier Simón‐Sánchez, Laura L. Kilarski, Michael A. Nalls, María Martínez, Claudia Schulte, Peter Alan Holmans, Thomas Gasser, John Hardy, Andrew B. Singleton, Nicholas W. Wood, Alexis Brice, Peter Heutink, Nigel Williams, Huw R. Morris
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0030677

ISL1 Directly Regulates FGF10 Transcription during Human Cardiac Outflow Formation
Cited by: 43
Author(s): Christelle Golzio, Emmanuelle Havis, Philippe Daubas, Grégory Nuel, Candice Babarit, Arnold Münnich, Michel Vekemans, Stéphane Zaffran, Stanislas Lyonnet, Heather C. Etchevers
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0008693

Genome-Wide Analyses of Gene Expression during Mouse Endochondral Ossification
Cited by: 47
Author(s): Claudine G. James, Lee‐Anne Stanton, Hanga Agoston, Veronica Ulici, T. Michael Underhill, Frank Beier
Software Mentions: 1
Published: over 15 years ago

10.1007/s00335-015-9583-x

Creating reference gene annotation for the mouse C57BL6/J genome assembly
Cited by: 179
Author(s): Jonathan M. Mudge, Jennifer Harrow
Software Mentions: 1
Published: about 10 years ago

10.26508/lsa.202101028

Hierarchical dinucleotide distribution in genome along evolution and its effect on chromatin packing
Cited by: 2
Author(s): Zhicheng Cai, Yongrui He, Sirui Liu, Yue Xue, Hui Quan, Ling Zhang, Yi Qin Gao
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0205109

Functional analysis of a triplet deletion in the gene encoding the sodium glucose transporter 3, a potential risk factor for ADHD
Cited by: 5
Author(s): Nadine Schäfer, M Friedrich, Morten Jørgensen, Sina Kollert, Hermann Koepsell, Erhard Wischmeyer, Klaus‐Peter Lesch, Dietmar Geiger, Frank Döring
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0016685

Detection and Removal of Biases in the Analysis of Next-Generation Sequencing Reads
Cited by: 88
Author(s): Schraga Schwartz, Oren Ram, Gil Ast
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0042371

Mating of the Stichotrichous Ciliate Oxytricha trifallax Induces Production of a Class of 27 nt Small RNAs Derived from the Parental Macronucleus
Cited by: 40
Author(s): Alan M. Zahler, Zachary T. Neeb, Athena W. Lin, Sol Katzman
Software Mentions: 1
Published: almost 13 years ago

10.1042/AN20130029

Increased Binding of Stroke-Induced Long Non-Coding RNAs to the Transcriptional Corepressors Sin3A and coREST
Cited by: 67
Author(s): Ashutosh Dharap, Courtney Pokrzywa, Raghu Vemuganti
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0201041

Diagnostic value of partial exome sequencing in developmental disorders
Cited by: 33
Author(s): Laura Gieldon, Luisa Mackenroth, Anne‐Karin Kahlert, Johannes R. Lemke, Joseph Porrmann, Jens Schallner, Maja von der Hagen, Susanne Markus, Sabine Weidensee, Barbara Novotna, Charlotte Soerensen, Barbara Klink, Johannes Maximilian Wagner, Andreas Tzschach, Arne Jahn, Franziska Kuhlee, Karl Hackmann, Evelin Schröck, Nataliya Di Donato, Andreas Rump
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0059577

The Turkey Ig-Like Receptor Family: Identification, Expression and Function
Cited by: 10
Author(s): Katharina Windau, Birgit C. Viertlboeck, Thomas Göbel
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0004496

Genetic Variants of Wnt Transcription Factor TCF-4 (TCF7L2) Putative Promoter Region Are Associated with Small Intestinal Crohn's Disease
Cited by: 126
Author(s): Maureen J. Koslowski, I. Kübler, Mathias Chamaillard, Elke Schaeffeler, Walter Reinisch, Guoxing Wang, Julia Beisner, Alexander Teml, Laurent Peyrin–Biroulet, Stefan Winter, Klaus Herrlinger, Paul Rutgeerts, Séverine Vermeire, Rachel Cooney, Klaus Fellermann, D P Jewell, Charles L. Bevins, Matthias Schwab, Eduard F. Stange, Jan Wehkamp
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0060465

Gene Regulation by CcpA and Catabolite Repression Explored by RNA-Seq in Streptococcus mutans
Cited by: 64
Author(s): Lin Zeng, Sang Chul Choi, Charles G. Danko, Adam Siepel, Michael J. Stanhope, Robert A. Burne
Software Mentions: 1
Published: over 12 years ago

10.26508/lsa.201900515

Laminin is the ECM niche for trophoblast stem cells
Cited by: 21
Author(s): Daiji Kiyozumi, Itsuko Nakano, Ryoko Sato‐Nishiuchi, Satoshi Tanaka, Kiyotoshi Sekiguchi
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.202000666

BACH family members regulate angiogenesis and lymphangiogenesis by modulating VEGFC expression
Cited by: 19
Author(s): Batya Cohen, Hanoch Tempelhof, Tal Raz, Roni Oren, Julian Nicenboim, Filip Bochner, Ron Even, Adam Jelinski, Raya Eilam, Shifra Ben‐Dor, Yoseph Adaddi, Ofra Golani, Shlomi Lazar, Karina Yaniv, Michal Neeman
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0008743

Enhanced Binding of Poly(ADP-ribose)polymerase-1 and Ku80/70 to the ITGA2 Promoter via an Extended Cytosine-Adenosine Repeat
Cited by: 11
Author(s): Yann Chéli, Shirley Williams, Robert Ballotti, Diane J. Nugent, Thomas J. Kunicki
Software Mentions: 1
Published: over 15 years ago

10.3390/life11080861

Analysis of Homozygous-by-Descent (HBD) Segments for Purebred and Crossbred Pigs in Russia
Cited by: 4
Author(s): Siroj Bakoev, Anatoly Kolosov, Faridun Bakoev, Olga Kostyunina, Nekruz Bakoev, Т. С. Романец, Olga Koshkina, Lyubov Getmantseva
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0077224

Alternative 5’ Untranslated Regions Are Involved in Expression Regulation of Human Heme Oxygenase-1
Cited by: 39
Author(s): Marcel Kramer, Christoph Sponholz, Monique Slaba, Bianka Wissuwa, Ralf A. Claus, Uwe Menzel, Klaus Huse, Matthias Platzer, Michael Bauer
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0136227

Hepatitis C Virus Driven AXL Expression Suppresses the Hepatic Type I Interferon Response
Cited by: 17
Author(s): Scott A. Read, Enoch Tay, Mahsa Shahidi, K. O'Connor, David R. Booth, Jacob George, Mark W. Douglas
Software Mentions: 1
Published: almost 10 years ago

10.3390/life11060510

Genomic Regions and Candidate Genes Linked to Capped Hock in Pig
Cited by: 3
Author(s): Lyubov Getmantseva, Maria Kolosova, Faridun Bakoev, Anna Zimina, Siroj Bakoev
Software Mentions: 1
Published: about 4 years ago

10.1038/s41375-018-0311-x

Global long terminal repeat activation participates in establishing the unique gene expression programme of classical Hodgkin lymphoma
Cited by: 16
Author(s): Benjamin Edginton-White, Pierre Cauchy, Salam A. Assi, Sven Hartmann, Arthur D. Riggs, Stephan Mathas, Peter N. Cockerill, Constanze Bonifer
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0115358

Genome-Wide H3K4me3 Analysis in Angus Cattle with Divergent Tenderness
Cited by: 14
Author(s): Chunping Zhao, José A. Carrillo, Fei Tian, Zan Liu, Scott M. Updike, Keji Zhao, Fei Zhan, Jiuzhou Song
Software Mentions: 1
Published: about 10 years ago

10.1186/s42826-020-00065-x

Tamoxifen-inducible cardiac-specific Cre transgenic mouse using VIPR2 intron
Cited by: 2
Author(s): Hyun Jung Chin, So-Young Lee, Daekee Lee
Software Mentions: 1
Published: almost 5 years ago

10.1038/srep43296

Glucocorticoid receptor positively regulates transcription of FNDC5 in the liver
Cited by: 28
Author(s): Hyoung Kyu Kim, Yu Jeong Jeong, In-Sung Song, Yeon Hee Noh, Kyo Won Seo, Min Kim, Jin Han
Software Mentions: 1
Published: over 8 years ago

10.1038/srep43605

A Core Regulatory Circuit in Glioblastoma Stem Cells Links MAPK Activation to a Transcriptional Program of Neural Stem Cell Identity
Cited by: 19
Author(s): Gregory Riddick, Svetlana Kotliarova, Virginia Rodriguez, H. S. Kim, Amanda Linkous, Andrew J. Storaska, Susie Ahn, Jennifer Walling, Galina I. Belova, Howard A. Fine
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0121748

Sepsis Induces Specific Changes in Histone Modification Patterns in Human Monocytes
Cited by: 38
Author(s): Sebastian Weiterer, Florian Uhle, Christoph Lichtenstern, Benedikt Hermann Siegler, Sabin Bhuju, Michael Jarek, Marek Bartkuhn, Markus Weigand
Software Mentions: 1
Published: over 10 years ago

10.1038/srep43733

Heterozygous mutation of eEF1A1b resulted in spermatogenesis arrest and infertility in male tilapia, Oreochromis niloticus
Cited by: 27
Author(s): Jinlin Chen, Dongneng Jiang, Dejie Tan, Zheng Fan, Yingying Wei, Minghui Li, Deshou Wang
Software Mentions: 1
Published: over 8 years ago

10.1186/s40575-016-0037-x

A large deletion in RPGR causes XLPRA in Weimaraner dogs
Cited by: 17
Author(s): Regina Kropatsch, Denis A. Akkad, Matthias Frank, Carsten U Rosenhagen, Janine Altmüller, Peter Nürnberg, Jórg T. Epplen, Gabriele Dekomien
Software Mentions: 1
Published: about 9 years ago

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