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10.26508/lsa.201900515

Laminin is the ECM niche for trophoblast stem cells
Cited by: 21
Author(s): Daiji Kiyozumi, Itsuko Nakano, Ryoko Sato‐Nishiuchi, Satoshi Tanaka, Kiyotoshi Sekiguchi
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2148-10-157

Functional conservation of a forebrain enhancer from the elephant shark (Callorhinchus milii) in zebrafish and mice
Cited by: 11
Author(s): R. Macdonald, Mélanie Debiais-Thibaud, Kyle J. Martin, Luc Poitras, Boon-Hui Tay, Byrappa Venkatesh, Marc Ekker
Software Mentions: 1
Published: over 16 years ago

10.26508/lsa.202000666

BACH family members regulate angiogenesis and lymphangiogenesis by modulating VEGFC expression
Cited by: 19
Author(s): Batya Cohen, Hanoch Tempelhof, Tal Raz, Roni Oren, Julian Nicenboim, Filip Bochner, Ron Even, Adam Jelinski, Raya Eilam, Shifra Ben‐Dor, Yoseph Adaddi, Ofra Golani, Shlomi Lazar, Karina Yaniv, Michal Neeman
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.2005595

Heterochromatin delays CRISPR-Cas9 mutagenesis but does not influence the outcome of mutagenic DNA repair
Cited by: 71
Author(s): Eirini M. Kallimasioti-Pazi, Keerthi Thelakkad Chathoth, Gillian C.A. Taylor, Alison Meynert, Tracy Ballinger, Martijn J. E. Kelder, Sébastien Lalevée, Ildem Sanli, Robert Feil, Andrew J. Wood
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pcbi.1000988

Systematic Inference of Copy-Number Genotypes from Personal Genome Sequencing Data Reveals Extensive Olfactory Receptor Gene Content Diversity
Cited by: 58
Author(s): Sebastian M. Waszak, Yehudit Hasin, Thomas Zichner, Tsviya Olender, Ifat Keydar, Miriam Khen, Adrian M. Stütz, Andreas Schlattl, Doron Lancet, Jan O. Korbel
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pcbi.1003951

The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data
Cited by: 24
Author(s): Norman E. Davey, Venkata Satagopam, Salvador Santiago-Mozos, Carlos Villacorta-Martín, Tanmay A. M. Bharat, Reinhard Schneider, John Briggs
Software Mentions: 1
Published: almost 12 years ago

10.18632/oncotarget.15478

NOMO-1 gene is deleted in early-onset colorectal cancer
Cited by: 16
Author(s): José Perea, Juan Luis Garcı́a, Javier Bajo Pérez, Daniel Rueda, María Arriba, Yolanda Rodríguez, Miguel Urioste, Rogelio González-Sarmiento
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2148-9-195

A fungal phylogeny based on 82 complete genomes using the composition vector method
Cited by: 185
Author(s): Hao Wang, Zhonghui Xu, Lei Gao, Bailin Hao
Software Mentions: 1
Published: about 17 years ago

10.1186/1471-2148-8-17

A genome-wide screen for noncoding elements important in primate evolution
Cited by: 91
Author(s): Eliot C. Bush, Bruce T. Lahn
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pcbi.1001020

Assessing Computational Methods of Cis-Regulatory Module Prediction
Cited by: 69
Author(s): Jing Su, Sarah A. Teichmann, Thomas A. Down
Software Mentions: 1
Published: almost 16 years ago

10.7554/eLife.01236

Global cellular response to chemotherapy-induced apoptosis
Cited by: 60
Author(s): Arun P. Wiita, Etay Ziv, Paul J. Wiita, Anatoly Urisman, Olivier Julien, Alma L. Burlingame, Jonathan S. Weissman, James A. Wells
Software Mentions: 1
Published: almost 13 years ago

10.18632/oncotarget.15695

Immunocompetent mouse allograft models for development of therapies to target breast cancer metastasis
Cited by: 72
Author(s): Yuan Yang, Howard H. Yang, Ying Hu, Peter H. Watson, Huaitian Liu, Thomas Geiger, Miriam R. Anver, Diana C. Haines, Philip Martin, Jeffrey E. Green, Maxwell P. Lee, Kent W. Hunter, Lalage M. Wakefield
Software Mentions: 1
Published: over 9 years ago

10.1155/2018/7640272

Myoblast Myogenic Differentiation but Not Fusion Process Is Inhibited via MyoD Tetraplex Interaction
Cited by: 5
Author(s): Stefano Testa, Pietro D’Addabbo, Ersilia Fornetti, Roberta Belli, Claudia Fuoco, Sergio Bernardini, Stefano Cannata, Domenico Frezza, Cesare Gargioli
Software Mentions: 1
Published: over 8 years ago

10.3390/life11080861

Analysis of Homozygous-by-Descent (HBD) Segments for Purebred and Crossbred Pigs in Russia
Cited by: 4
Author(s): Siroj Bakoev, Anatoly Kolosov, Faridun Bakoev, Olga Kostyunina, Nekruz Bakoev, Т. С. Романец, Olga Koshkina, Lyubov Getmantseva
Software Mentions: 1
Published: about 5 years ago

10.3390/life11060510

Genomic Regions and Candidate Genes Linked to Capped Hock in Pig
Cited by: 3
Author(s): Lyubov Getmantseva, Maria Kolosova, Faridun Bakoev, Anna Zimina, Siroj Bakoev
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pcbi.0030137

Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation
Cited by: 109
Author(s): Joti Giordano, Yongchao Ge, Yevgeniy Gelfand, György Abrusán, Gary Benson, Peter E. Warburton
Software Mentions: 1
Published: about 19 years ago

10.1038/s41375-018-0311-x

Global long terminal repeat activation participates in establishing the unique gene expression programme of classical Hodgkin lymphoma
Cited by: 16
Author(s): Benjamin Edginton-White, Pierre Cauchy, Salam A. Assi, Sven Hartmann, Arthur D. Riggs, Stephan Mathas, Peter N. Cockerill, Constanze Bonifer
Software Mentions: 1
Published: almost 8 years ago

10.1186/s42826-020-00065-x

Tamoxifen-inducible cardiac-specific Cre transgenic mouse using VIPR2 intron
Cited by: 2
Author(s): Hyun Jung Chin, So-Young Lee, Daekee Lee
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pcbi.1003075

Computational Assessment of the Cooperativity between RNA Binding Proteins and MicroRNAs in Transcript Decay
Cited by: 30
Author(s): Peng Jiang, Mona Singh, Hilary A. Coller
Software Mentions: 1
Published: over 13 years ago

10.1186/s40575-016-0037-x

A large deletion in RPGR causes XLPRA in Weimaraner dogs
Cited by: 17
Author(s): Regina Kropatsch, Denis A. Akkad, Matthias Frank, Carsten U Rosenhagen, Janine Altmüller, Peter Nürnberg, Jórg T. Epplen, Gabriele Dekomien
Software Mentions: 1
Published: about 10 years ago

10.1186/2049-3002-1-14

Expression and phosphorylation of the AS160_v2 splice variant supports GLUT4 activation and the Warburg effect in multiple myeloma
Cited by: 18
Author(s): Javelin C. Cheng, Samuel K. McBrayer, Cristian Coarfa, Sevim Dalva-Aydemir, Preethi H. Gunaratne, John D. Carpten, Jonathan J. Keats, Steven T. Rosen, Mala Shanmugam
Software Mentions: 1
Published: over 13 years ago

10.1186/s12935-020-01597-x

Novel sequential treatment with palbociclib enhances the effect of cisplatin in RB-proficient triple-negative breast cancer
Cited by: 11
Author(s): Ya‐Jing Huang, Hao Wu, Xingrui Li
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12935-019-0816-z

OTU deubiquitinase 4 is silenced and radiosensitizes non-small cell lung cancer cells via inhibiting DNA repair
Cited by: 17
Author(s): Zhiqiang Wu, Minghan Qiu, Yu Guo, Jian Zhao, Zhuang Liu, Hui Wang, Maobin Meng, Zhiyong Yuan, Zeyun Mi
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.0040038

Modeling an Evolutionary Conserved Circadian Cis-Element
Cited by: 30
Author(s): Éric R. Paquet, Guillaume Rey, Félix Naef
Software Mentions: 1
Published: over 18 years ago

10.1186/s12935-019-0833-y

Identification of ESM1 overexpressed in head and neck squamous cell carcinoma
Cited by: 17
Author(s): Hui Xu, Xiaohong Chen, Zhigang Huang
Software Mentions: 1
Published: over 7 years ago

10.1007/s00223-018-0406-4

Pharmacological Inhibition of the Skeletal IKKβ Reduces Breast Cancer-Induced Osteolysis
Cited by: 8
Author(s): Silvia Marino, Ryan T. Bishop, Patrick Mollat, Aymen I. Idris
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2148-14-74

An evolutionarily biased distribution of miRNA sites toward regulatory genes with high promoter-driven intrinsic transcriptional noise
Cited by: 18
Author(s): Hossein Zare, Arkady B. Khodursky, Vittorio Sartorelli
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1008268

The Airn lncRNA does not require any DNA elements within its locus to silence distant imprinted genes
Cited by: 34
Author(s): Daniel Andergassen, Markus Muckenhuber, Philipp C. Bammer, Tomasz M. Kuliński, Hans-Christian Theussl, Takahiko Shimizu, Josef Penninger, Florian M. Pauler, Quanah J. Hudson
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.44558

Decoys provide a scalable platform for the identification of plant E3 ubiquitin ligases that regulate circadian function
Cited by: 23
Author(s): Ann Feke, Wei Liu, Jing Han Hong, Man-Wah Li, Chin-Mei Lee, Elton Zhou, Joshua M. Gendron
Software Mentions: 1
Published: over 7 years ago

10.1093/bib/bbv101

Progress and challenges in bioinformatics approaches for enhancer identification
Cited by: 76
Author(s): Dimitrios Kleftogiannis, Panos Kalnis, Vladimir B. Bajic
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pgen.1004343

Transcriptional Control of Steroid Biosynthesis Genes in the Drosophila Prothoracic Gland by Ventral Veins Lacking and Knirps
Cited by: 45
Author(s): E. Thomas Danielsen, Morten E. Moeller, Elad Dorry, Tatsuya Komura-Kawa, Yoshinori Fujimoto, Jesper T. Troelsen, Rachel Herder, Michael B. O’Connor, Ryusuke Niwa, Kim Rewitz
Software Mentions: 1
Published: about 12 years ago

10.1186/bcr2121

Epigenetic mapping and functional analysis in a breast cancer metastasis model using whole-genome promoter tiling microarrays
Cited by: 62
Author(s): David I. Rodenhiser, Joseph Andrews, Wendy Kennette, Bekim Sadiković, Ariel Mendlowitz, Alan B. Tuck, Ann F. Chambers
Software Mentions: 1
Published: about 18 years ago

10.1371/journal.pgen.1000867

Association of the OCA2 Polymorphism His615Arg with Melanin Content in East Asian Populations: Further Evidence of Convergent Evolution of Skin Pigmentation
Cited by: 110
Author(s): Melissa Edwards, Abigail W. Bigham, Jinze Tan, Shilin Li, Agnes Gozdzik, Kelley Ross, Jin Li, Esteban J. Parra
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pgen.1002388

Identification of a Genomic Reservoir for New TRIM Genes in Primate Genomes
Cited by: 98
Author(s): Kyudong Han, Dianne I. Lou, Sara L. Sawyer
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pgen.1006380

Coordinately Co-opted Multiple Transposable Elements Constitute an Enhancer for wnt5a Expression in the Mammalian Secondary Palate
Cited by: 45
Author(s): Hidenori Nishihara, Naoki Kobayashi, Chiharu Kimura-Yoshida, Kuo Yan, Olga Bormuth, Qiong Ding, Akiko Nakanishi, Takeshi Sasaki, Mika Hirakawa, Kenta Sumiyama, Yasuhide Furuta, Victor Tarabykin, Isao Matsuo, Norihiro Okada
Software Mentions: 1
Published: almost 10 years ago

10.1186/bcr2358

An intraductal human-in-mouse transplantation model mimics the subtypes of ductal carcinoma in situ
Cited by: 184
Author(s): Fariba Behbod, Frances Kittrell, Heather L. LaMarca, David G. Edwards, Sofia Kerbawy, Jessica Heestand, Evelin Young, Purna Mukhopadhyay, Hung‐Wen Yeh, D. Craig Allred, Min Hu, Kornélia Polyák, Jeffrey M. Rosen, Daniel Medina
Software Mentions: 1
Published: about 17 years ago

10.1186/1471-2148-13-238

The vertebrate ancestral repertoire of visual opsins, transducin alpha subunits and oxytocin/vasopressin receptors was established by duplication of their shared genomic region in the two rounds of early vertebrate genome duplications
Cited by: 103
Author(s): David Lagman, Daniel Ocampo Daza, Jenny Widmark, Xesús M. Abalo, Görel Sundström, Dan Larhammar
Software Mentions: 1
Published: almost 13 years ago

10.1093/brain/awz257

Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics
Cited by: 108
Author(s): Akira Wiberg, Michael Ng, Yasser Al Omran, Fidel Alfaro-Almagro, Paul McCarthy, Jonathan Marchini, David L.H. Bennett, Stephen M. Smith, Gwenaëlle Douaud, Dominic Furniss
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pgen.1000193

Novel Mutations in TARDBP (TDP-43) in Patients with Familial Amyotrophic Lateral Sclerosis
Cited by: 405
Author(s): Nicola J. Rutherford, Yongjie Zhang, Matt Baker, Jennifer Gass, NiCole A. Finch, Yafei Xu, Heather Stewart, Brendan J. Kelley, Karen M. Kuntz, Richard Crook, Jemeen Sreedharan, Caroline Vance, Eric J. Sorenson, Carol F. Lippa, Eileen H. Bigio, Daniel H. Geschwind, David S. Knopman, Hiroshi Mitsumoto, Ronald C. Petersen, Neil R. Cashman, Mike Hutton, Christopher E. Shaw, Kevin B. Boylan, Bradley F. Boeve, Neill R. Graff‐Radford, Zbigniew K. Wszołek, Richard J. Caselli, Dennis W. Dickson, Ian R. Mackenzie, Leonard Petrucelli, Rosa Rademakers
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pgen.0030020

A Screen for Retrotransposed Imprinted Genes Reveals an Association between X Chromosome Homology and Maternal Germ-Line Methylation
Cited by: 108
Author(s): Andrew J. Wood, Roland G. Roberts, David Gabriel Monk, Gudrun E. Moore, Reiner Schulz, Rebecca J. Oakey
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pgen.0030090

Localizing Recent Adaptive Evolution in the Human Genome
Cited by: 456
Author(s): Scott Williamson, Melissa J. Hubisz, Andrew G. Clark, Bret A. Payseur, Carlos D. Bustamante, Rasmus Nielsen
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pgen.1002882

Genetics and Regulatory Impact of Alternative Polyadenylation in Human B-Lymphoblastoid Cells
Cited by: 48
Author(s): Oh Kyu Yoon, Tiffany Y. Hsu, Joo Hyun Im, Rachel B. Brem
Software Mentions: 1
Published: about 14 years ago

10.1038/s41416-018-0301-9

Low-dose anti-inflammatory combinatorial therapy reduced cancer stem cell formation in patient-derived preclinical models for tumour relapse prevention
Cited by: 27
Author(s): Bee Luan Khoo, Gianluca Grenci, Joey Sze Yun Lim, Yi Wan Lim, July Fong, Wei Hseun Yeap, Su Bin Lim, Song Lin Chua, Siew Cheng Wong, Yoon Sim Yap, Soo‐Chin Lee, Chwee Teck Lim, Jongyoon Han
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pgen.1002396

Targeted Proteolysis of Plectin Isoform 1a Accounts for Hemidesmosome Dysfunction in Mice Mimicking the Dominant Skin Blistering Disease EBS-Ogna
Cited by: 56
Author(s): Gernot Walko, Nevena Vukasinovic, Karin Groß, Ilse Fischer, Sabrina Sibitz, Peter Fuchs, Siegfried Reipert, Ute Jungwirth, Walter Berger, Ulrich Salzer, Oliviero Carugo, Maria J. Castañón, Gerhard Wiche
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pgen.1003504

The Majority of Primate-Specific Regulatory Sequences Are Derived from Transposable Elements
Cited by: 290
Author(s): Pierre-Étienne Jacques, Justin Jeyakani, Guillaume Bourque
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2148-7-S1-S14

Comparative analysis of genome tiling array data reveals many novel primate-specific functional RNAs in human
Cited by: 20
Author(s): Zhaolei Zhang, Andy Wing Chun Pang, Mark Gerstein
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2148-14-11

Evolutionary classification of ammonium, nitrate, and peptide transporters in land plants
Cited by: 107
Author(s): Neil J J B von Wittgenstein, Cuong H. Le, Barbara J. Hawkins, Jürgen Ehlting
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1000195

Missense Mutation in Exon 2 of SLC36A1 Responsible for Champagne Dilution in Horses
Cited by: 53
Author(s): Deborah Cook, Samantha A. Brooks, Rebecca R. Bellone, Ernest Bailey
Software Mentions: 1
Published: almost 18 years ago

10.1042/BSR20203672

Modelling the functional genomics of Parkinson’s disease in Caenorhabditis elegans: LRRK2 and beyond
Cited by: 7
Author(s): Rachael J Chandler, Susanna Cogo, Patrick A. Lewis, Éva Kevei
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pgen.0030086

Arabidopsis TFL2/LHP1 Specifically Associates with Genes Marked by Trimethylation of Histone H3 Lysine 27
Cited by: 538
Author(s): Franziska Turck, François Roudier, Sara Farrona, Marie‐Laure Martin‐Magniette, Elodie Guillaume, Nicolas Buisine, Séverine Gagnot, Robert A. Martienssen, George Coupland, Vincent Colot
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pgen.1005451

Strong Selective Sweeps on the X Chromosome in the Human-Chimpanzee Ancestor Explain Its Low Divergence
Cited by: 55
Author(s): Julien Y. Dutheil, Kasper Munch, Kiwoong Nam, Thomas Mailund, Mikkel H. Schierup
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pgen.1006751

Semaphorin-1a prevents Drosophila olfactory projection neuron dendrites from mis-targeting into select antennal lobe regions
Cited by: 8
Author(s): Hung‐Chang Shen, Sao-Yu Chu, Tsai-Chi Hsu, Chun-Han Wang, I-Ya Lin, Hung–Hsiang Yu
Software Mentions: 1
Published: over 9 years ago

10.1042/BSR20192114

P63 modulates the expression of theWDFY2gene which is implicated in cancer regulation and limb development
Cited by: 4
Author(s): Paola Monti, Yari Ciribilli, Giorgia Foggetti, Alessandra Bisio, Serena Cappato, Alberto Inga, Maria Teresa Divizia, Margherita Lerone, Renata Bocciardi, Gilberto Fronza
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.12059

Quantitative neuroanatomy for connectomics in Drosophila
Cited by: 247
Author(s): Casey M Schneider-Mizell, Stephan Gerhard, Mark Longair, Tom Kazimiers, Feng Li, Maarten Zwart, Andrew Champion, Frank M. Midgley, Richard D. Fetter, Stephan Saalfeld, Albert Cardona
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.17399

Clinically significant sub-clonality for common drivers can be detected in 26% of KRAS/EGFR mutated lung adenocarcinomas
Cited by: 4
Author(s): Einav Simon, Tova Bick, Shada Sarji, Talia Shentzer, Elad Prinz, Liza Yehiam, Edmond Sabo, Ofer Ben‐Izhak, Dov Hershkovitz
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1004933

hnRNP K Coordinates Transcriptional Silencing by SETDB1 in Embryonic Stem Cells
Cited by: 61
Author(s): Peter J. Thompson, Vered Dulberg, Kyung Mee Moon, Leonard J. Foster, Carol Chen, Mehdi Karimi, Matthew C. Lorincz
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pgen.1004958

Tissue-Specific Effects of Genetic and Epigenetic Variation on Gene Regulation and Splicing
Cited by: 180
Author(s): María Gutiérrez‐Arcelus, Halit Ongen, Tuuli Lappalainen, Stephen B. Montgomery, Alfonso Buil, Alisa Yurovsky, Julien Bryois, Ismaël Padioleau, Luciana Romano, Alexandra Planchon, Emilie Falconnet, Deborah Bielser, Maryline Gagnebin, Thomas Giger, Christelle Borel, Audrey Letourneau, Periklis Makrythanasis, Michel Guipponi, Corinne Gehrig, Stylianos E. Antonarakis, Emmanouil T. Dermitzakis
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pgen.1003895

ALS-Associated FUS Mutations Result in Compromised FUS Alternative Splicing and Autoregulation
Cited by: 160
Author(s): Yueqin Zhou, Songyan Liu, Guodong Liu, Arzu Öztürk, Geoffrey Hicks
Software Mentions: 1
Published: almost 13 years ago

10.18632/oncotarget.14175

Expression analysis of microRNA as prognostic biomarkers in colorectal cancer
Cited by: 46
Author(s): Jie Yang, Dongling Ma, Andrew Fesler, Haiyan Zhai, Apisri Leamniramit, Wenzhe Li, Song Wu, Jingfang Ju
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.0030127

Divergent Evolution of Human p53 Binding Sites: Cell Cycle Versus Apoptosis
Cited by: 93
Author(s): Monica M. Horvath, Xuting Wang, Michael A. Resnick, Douglas A. Bell
Software Mentions: 1
Published: about 19 years ago

10.1042/BSR20170199

Zebrafish models for functional and toxicological screening of nanoscale drug delivery systems: promoting preclinical applications
Cited by: 39
Author(s): Keon Yong Lee, Gun Hyuk Jang, Cho Hyun Byun, Minhong Jeun, Peter C. Searson, Kwan H. Lee
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2148-8-46

Rapid bursts of androgen-binding protein (Abp) gene duplication occurred independently in diverse mammals
Cited by: 42
Author(s): Christina M. Laukaitis, Andreas Heger, Tyler D Blakley, Pavel Munclinger, Chris P. Ponting, Robert C. Karn
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pgen.1000522

Disease-Causing 7.4 kb Cis-Regulatory Deletion Disrupting Conserved Non-Coding Sequences and Their Interaction with the FOXL2 Promotor: Implications for Mutation Screening
Cited by: 83
Author(s): Barbara D′haene, Catia Attanasio, Diane Beysen, Josée Dostie, Edmond G. Lemire, Philippe Bouchard, Michael Field, K. Jones, Birgit Lorenz, Björn Menten, Karen Buysse, Filip Pattyn, Marc Friedli, Catherine Ucla, Colette Rossier, Carine Wyss, Frank Speleman, Anne De Paepe, Job Dekker, Stylianos E. Antonarakis, Elfride De Baere
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pgen.1003489

Female Bias in Rhox6 and 9 Regulation by the Histone Demethylase KDM6A
Cited by: 40
Author(s): Joel B. Berletch, Xinxian Deng, Di Kim Nguyen, Christine M. Distèche
Software Mentions: 1
Published: over 13 years ago

10.3390/biom10121700

Molecular Dynamics Simulations Predict that rSNP Located in the HNF-1α Gene Promotor Region Linked with MODY3 and Hepatocellular Carcinoma Promotes Stronger Binding of the HNF-4α Transcription Factor
Cited by: 4
Author(s): Eva Španinger, Uroš Potočnik, Urban Bren
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1004257

A LINE-1 Insertion in DLX6 Is Responsible for Cleft Palate and Mandibular Abnormalities in a Canine Model of Pierre Robin Sequence
Cited by: 49
Author(s): Zena Wolf, Elizabeth J. Leslie, Boaz Arzi, Kartika Jayashankar, Nili Karmi, Zhong‐Lin Jia, Douglas J. Rowland, Amy Young, Noa Safra, Sliskovic Saundra, Jeffrey C. Murray, Claire M. Wade, Danika L. Bannasch
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1004498

Microsatellite Interruptions Stabilize Primate Genomes and Exist as Population-Specific Single Nucleotide Polymorphisms within Individual Human Genomes
Cited by: 26
Author(s): Guruprasad Ananda, Suzanne E. Hile, Amanda Breski, Yanli Wang, Yogeshwar D. Kelkar, Kateryna D. Makova, Kristin A. Eckert
Software Mentions: 1
Published: about 12 years ago

10.18632/oncotarget.17826

C1orf64 is a novel androgen receptor target gene and coregulator that interacts with 14-3-3 protein in breast cancer
Cited by: 11
Author(s): Ali Naderi
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1003285

Drosophila Yemanuclein and HIRA Cooperate for De Novo Assembly of H3.3-Containing Nucleosomes in the Male Pronucleus
Cited by: 49
Author(s): Guillermo A. Orsi, Ahmed Algazeery, Régis E. Meyer, Michèle Capri, Laure Sapey-Triomphe, Béatrice Horard, Henri Gruffat, Pierre Couble, Ounissa Aı̈t-Ahmed, Benjamin Loppin
Software Mentions: 1
Published: over 13 years ago

10.1186/s12862-018-1147-8

Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa
Cited by: 16
Author(s): Alyssa D. Lokits, Henrike Indrischek, Jens Meiler, Heidi E. Hamm, Peter F. Stadler
Software Mentions: 1
Published: over 8 years ago

10.3390/biom10081115

Ancient Evolutionary Origin of Intrinsically Disordered Cancer Risk Regions
Cited by: 11
Author(s): Mátyás Pajkos, András Zeke, Zsuzsanna Dosztányi
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2148-12-62

Genomic characterization of the European sea bass Dicentrarchus labrax reveals the presence of a novel uncoupling protein (UCP) gene family member in the teleost fish lineage
Cited by: 11
Author(s): Mbaye Tine, Heiner Kuhl, Martin Jastroch, Richard Reinhardt
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pgen.1002582

Antagonistic Regulation of Apoptosis and Differentiation by the Cut Transcription Factor Represents a Tumor-Suppressing Mechanism in Drosophila
Cited by: 41
Author(s): Zongzhao Zhai, Nati Ha, Fani Papagiannouli, Anne Hamacher-Brady, Nathan R. Brady, Sebastian Sorge, Daniela Bezdan, Ingrid Lohmann
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pgen.1000506

Genome-Wide uH2A Localization Analysis Highlights Bmi1-Dependent Deposition of the Mark at Repressed Genes
Cited by: 60
Author(s): Eric M. Kallin, Ran Cao, Raja Jothi, Kai Xia, Kairong Cui, Keji Zhao, Yi Zhang
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pgen.1000072

A Genome-Wide Association Study Identifies Protein Quantitative Trait Loci (pQTLs)
Cited by: 404
Author(s): David Melzer, John Perry, Dena G. Hernandez, Annamaria Corsi, Kara Stevens, Ian Rafferty, Fulvio Lauretani, Anna Murray, J. Raphael Gibbs, Giuseppe Paolisso, Sajjad Rafiq, Javier Simón‐Sánchez, Hana Lango, Sonja W. Scholz, Michael N. Weedon, Sampath Arepalli, Neil Rice, Nicole Washecka, Alison Hurst, Angela Britton, William Henley, Joyce van de Leemput, Rongling Li, Anne B. Newman, Greg Tranah, Tamara B. Harris, Vijay Panicker, Colin Dayan, Amanda J. Bennett, Mark I. McCarthy, Aimo Ruokonen, Marjo‐Riitta Järvelin, Jack M. Guralnik, Stefania Bandinelli, Timothy M. Frayling, Andrew B. Singleton, Luigi Ferrucci
Software Mentions: 1
Published: over 18 years ago

10.3390/biom11081125

High Throughput miRNA Screening Identifies miR-574-3p Hyperproductive Effect in CHO Cells
Cited by: 2
Author(s): Živa Švab, Luca Braga, Corrado Guarnaccia, Ivan Labik, Jeremias S. Herzog, Marco Baralle, Mauro Giacca, Nataša Skoko
Software Mentions: 1
Published: about 5 years ago

10.1155/2013/703849

A Systems’ Biology Approach to Study MicroRNA-Mediated Gene Regulatory Networks
Cited by: 27
Author(s): Xin Lai, Animesh Bhattacharya, Ulf Schmitz, Manfred Kunz, Julio Vera, Olaf Wolkenhauer
Software Mentions: 1
Published: over 13 years ago

10.1155/2015/305716

Efficient Mitochondrial Genome Editing by CRISPR/Cas9
Cited by: 141
Author(s): Areum Jo, Sangwoo Ham, Gum Hwa Lee, Yun‐Il Lee, SangSeong Kim, Yong Kyu Lee, Joo‐Ho Shin
Software Mentions: 1
Published: over 11 years ago

10.1186/s40364-021-00296-7

SMAD1 as a biomarker and potential therapeutic target in drug-resistant multiple myeloma
Cited by: 8
Author(s): Jian Wu, Min Zhang, Omar Faruq, Eldad Zacksenhaus, Wen-Ming Chen, Aijun Liu, Hong Chang
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2148-9-217

BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
Cited by: 26
Author(s): Rahul Satija, Adam M. Novak, István Miklós, Rune B. Lyngsø, Jotun Hein
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pgen.1003065

Recurrent Targeted Genes of Hepatitis B Virus in the Liver Cancer Genomes Identified by a Next-Generation Sequencing–Based Approach
Cited by: 167
Author(s): Dong Ding, Xiaoyan Lou, Dasong Hua, Wei Yu, Lisha Li, Jun Wang, Feng Gao, Na Zhao, Guoping Ren, Lanjuan Li, Biaoyang Lin
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pgen.1000125

A Candidate Gene Approach Identifies the CHRNA5-A3-B4 Region as a Risk Factor for Age-Dependent Nicotine Addiction
Cited by: 245
Author(s): Robert B. Weiss, Timothy B. Baker, Dale S. Cannon, Andrew von Niederhausern, Diane M. Dunn, Nori Matsunami, Nanda Singh, Lisa Baird, Hilary Coon, William M. McMahon, Megan E. Piper, Michael C. Fiore, Mary Beth Scholand, John E. Connett, Richard E. Kanner, Lorise C. Gahring, Scott W. Rogers, John R. Hoidal, M. Leppert
Software Mentions: 1
Published: about 18 years ago

10.3390/biology2010233

Cell-Type Specific Determinants of NRAMP1 Expression in Professional Phagocytes
Cited by: 10
Author(s): Mathieu Cellier
Software Mentions: 1
Published: over 13 years ago

10.1186/s12861-016-0119-8

Expression and knockdown of zebrafish folliculin suggests requirement for embryonic brain morphogenesis
Cited by: 3
Author(s): Emma J. Kenyon, Monique Luijten, Harmeet Gill, Nan Li, Matthew Rawlings, James C. Bull, Yavor Hadzhiev, M.A.M. van Steensel, Eamonn R. Maher, Ferenc Müller
Software Mentions: 1
Published: about 10 years ago

10.1016/j.biopsych.2011.11.030

A Polymorphism Associated with Depressive Disorders Differentially Regulates Brain Derived Neurotrophic Factor Promoter IV Activity
Cited by: 51
Author(s): Benjamin Hing, Scott Davidson, Marrisa Lear, Gerome Breen, John P. Quinn, Peter McGuffin, Alasdair MacKenzie
Software Mentions: 1
Published: over 14 years ago

10.18632/oncotarget.17740

TUBB3 overexpression has a negligible effect on the sensitivity to taxol in cultured cell lines
Cited by: 17
Author(s): Mihoko A. Tame, Anna G. Manjón, Daria Belokhvostova, Jonne A. Raaijmakers, René H. Medema
Software Mentions: 1
Published: over 9 years ago

10.1016/j.biopsych.2011.01.037

Sex-Specific Role for Adenylyl Cyclase Type 7 in Alcohol Dependence
Cited by: 18
Author(s): Sylvane Desrivières, Sergey P. Pronko, Anbarasu Lourdusamy, Francesca Ducci, Paula L. Hoffman, Norbert Wodarz, Monika Ridinger, Marcella Rietschel, Diana Zélénika, Mark Lathrop, Günter Schumann, Boris Tabakoff
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-213X-8-46

Axon-bearing and axon-less horizontal cell subtypes are generated consecutively during chick retinal development from progenitors that are sensitive to follistatin
Cited by: 35
Author(s): Per-Henrík Edqvist, Madelen Lek, Henrik Boije, Sarah M Lindbäck, Finn Hallböök
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-213X-9-11

Trichostatin A treatment of cloned mouse embryos improves constitutive heterochromatin remodeling as well as developmental potential to term
Cited by: 79
Author(s): Walid E. Maalouf, Zichuan Liu, Vincent Brochard, Jean‐Paul Renard, Pascale Debey, Nathalie Beaujean, Daniele Zink
Software Mentions: 1
Published: over 17 years ago

10.1242/bio.019067

Reprogrammable CRISPR/Cas9-based system for inducing site-specific DNA methylation
Cited by: 213
Author(s): James I. McDonald, Hamza Celik, Lisa E. Rois, Gregory Fishberger, Tolison Fowler, Ryan Rees, Ashley C. Kramer, Andrew Martens, John Edwards, Grant A. Challen
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pgen.1005730

Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord
Cited by: 30
Author(s): Diana S. José-Edwards, Izumi Oda-Ishii, Jamie E. Kugler, Yale J. Passamaneck, Lavanya Katikala, Yutaka Nibu, Anna Di Gregorio
Software Mentions: 1
Published: over 10 years ago

10.1242/bio.028498

A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken model
Cited by: 7
Author(s): Mickael Orgeur, Marvin Martens, Stefan T. Börno, Bernd Timmermann, Delphine Duprez, Sigmar Stricker
Software Mentions: 1
Published: over 9 years ago

10.1186/s13062-017-0180-7

TFAP2A is a component of the ZEB1/2 network that regulates TGFB1-induced epithelial to mesenchymal transition
Cited by: 23
Author(s): Yoana Dimitrova, Andreas J. Gruber, Nitish Mittal, Souvik Ghosh, Beatrice Dimitriades, Daniel Mathow, William Aaron Grandy, Gerhard Christofori, Mihaela Zavolan
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-213X-13-18

Expression of phosphatase of regenerating liver family genes during embryogenesis: an evolutionary developmental analysis among Drosophila, amphioxus, and zebrafish
Cited by: 22
Author(s): Ming‐Der Lin, Hsun-Tzu Lee, Szu-Chieh Wang, Han-Ru Li, Hsin-Lun Hsien, Kai-Wen Cheng, Yu-Di Chang, Min-Lang Huang, Jr-Kai Yu, Yau‐Hung Chen
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pgen.1006997

A high resolution atlas of gene expression in the domestic sheep (Ovis aries)
Cited by: 117
Author(s): Emily L. Clark, Stephen J. Bush, Mary E. B. McCulloch, Iseabail L. Farquhar, Rachel Young, Lucas Lefèvre, Clare Pridans, Hiu‐Gwen Tsang, Chunlei Wu, Cyrus Afrasiabi, Michael Watson, Bruce Whitelaw, Thomas Charles Augustus Freeman, Kim M. Summers, Alan Archibald, David Hume
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pgen.1002540

A Downstream CpG Island Controls Transcript Initiation and Elongation and the Methylation State of the Imprinted Airn Macro ncRNA Promoter
Cited by: 17
Author(s): Martha V. Koerner, Florian M. Pauler, Quanah J. Hudson, Federica Santoro, Anna Sawicka, Philipp M. Guenzl, Stefan H. Stricker, Yvonne M. Schichl, Paulina A. Latos, Ruth M. Klement, Katarzyna E. Warczok, Jacek Wojciechowski, Christian Seiser, Róbert Královics, Denise P. Barlow
Software Mentions: 1
Published: over 14 years ago

10.1186/1745-6150-2-7

Cited by: 18
Author(s): Albert de Roos
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pgen.1000508

Genome-Wide Association Scan Meta-Analysis Identifies Three Loci Influencing Adiposity and Fat Distribution
Cited by: 457
Author(s): Cecilia M. Lindgren, Iris M. Heid, Joshua C. Randall, Claudia Lamina, Valgerður Steinthórsdóttir, Lu Qi, Elizabeth K. Speliotes, Guðmar Þorleifsson, Cristen J. Willer, Blanca Herrera, Anne Jackson, Noha Lim, Paul Scheet, Nicole Soranzo, Najaf Amin, Yurii S. Aulchenko, John C. Chambers, Alexander W. Drong, Jia Luan, Helen N. Lyon, Fernando Rivadeneira, Serena Sanna, Nicholas J. Timpson, M. Carola Zillikens, Hua Zhao Jing, Peter Almgren, Stefania Bandinelli, Amanda J. Bennett, Richard N. Bergman, Lori L. Bonnycastle, Suzannah Bumpstead, Stephen J. Chanock, Lynn Cherkas, Peter S. Chines, Lachlan Coin, Cyrus Cooper, Gabriel Crawford, Angela Doering, Anna F. Dominiczak, Alex S.F. Doney, Shah Ebrahim, Paul Elliott, Michael R. Erdos, Karol Estrada, Luigi Ferrucci, Guido Fischer, Nita G. Forouhi, Christian Gieger, Harald Grallert, Christopher J. Groves, Scott M. Grundy, Candace Guiducci, David Hadley, Anders Hamsten, Aki S. Havulinna, Albert Hofman, Rolf Holle, John W. Holloway, Thomas Illig, Bo Isomaa, Leonie C. Jacobs, Karen Jameson, Pekka Jousilahti, Fredrik Karpe, Johanna Kuusisto, Jaana Laitinen, G.M. Lathrop, Debbie A. Lawlor, Massimo Mangino, Wendy L. McArdle, Thomas Meitinger, Mario A. Morken, Andrew P. Morris, Patricia B. Munroe, Narisu Narisu, Anna Nordström, Peter Nordström, Ben A. Oostra, Colin N.A. Palmer, Felicity Payne, John F. Peden, Inga Prokopenko, Frida Renström, Aimo Ruokonen, Veikko Salomaa, Manjinder S. Sandhu, Laura J. Scott, Angelo Scuteri, Kaisa Silander, Kijoung Song, Xin Yuan, Heather M. Stringham, Amy J. Swift, Tiinamaija Tuomi, Manuela Uda, Péter Vollenweider, Gérard Waeber, Chris Wallace, G. Bragi Walters, Michael N. Weedon, Jacqueline C. M. Witteman, Cuilin Zhang, Weihua Zhang, Mark Caulfield, Francis S. Collins, George Davey Smith, Ian N.M. Day, Paul W. Franks, Andrew T. Hattersley, Frank B. Hu, Marjo‐Riitta Järvelin, Augustine Kong, Jaspal S. Kooner, Markku Laakso, Edward G. Lakatta, Vincent Mooser, Andrew D. Morris, Leena Peltonen, Nilesh J. Samani, Timothy D. Spector, David P. Strachan, Toshiko Tanaka, Jaakko Tuomilehto, André G. Uitterlinden, Cornelia M. van Duijn, Nicholas J. Wareham, Hugh Watkins, Dawn Waterworth, Michael Boehnke, Panos Deloukas, Leif Groop, David J. Hunter, Unnur Þorsteinsdóttir, David Schlessinger, H‐Erich Wichmann, Timothy M. Frayling, Gonçalo R. Abecasis, Joel N. Hirschhorn, Ruth J.F. Loos, Kāri Stefánsson, Karen L. Mohlke, Inês Barroso, Mark I. McCarthy
Software Mentions: 1
Published: about 17 years ago

10.1186/1471-213X-11-63

Conserved and non-conserved enhancers direct tissue specific transcription in ancient germ layer specific developmental control genes
Cited by: 25
Author(s): Satadal Chatterjee, Guillaume Bourque, Thomas Lufkin
Software Mentions: 1
Published: almost 15 years ago

10.6026/97320630015467

Molecular modelling and docking of Mus musculus HMGB1 inflammatory protein with CGA
Cited by: 3
Author(s): Alok Tripathi, Kriti Shrinet, Vinay Kumar Singh, Arvind Kumar
Software Mentions: 1
Published: about 7 years ago

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