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10.1371/journal.pone.0040637

An Effort to Use Human-Based Exome Capture Methods to Analyze Chimpanzee and Macaque Exomes
Cited by: 23
Author(s): Xin Jin, Mingze He, Betsy Ferguson, Yuhuan Meng, Limei Ouyang, Jingjing Ren, Thomas Mailund, Fei Sun, Liangdan Sun, Juan Shen, Min Zhuo, Li Song, Jufang Wang, Fei Ling, Yuqi Zhu, Christina Hvilsom, Hans R. Siegismund, Xiaoming Liu, Zhuolin Gong, Fang Ji, Xinzhong Wang, Boqing Liu, Yu Zhang, Jingli Hou, Jing Wang, Hua Zhao, Yanyi Wang, Xiaodong Fang, Guojie Zhang, Jian Wang, Xuejun Zhang, Mikkel H. Schierup, Hongli Du, Jun Wang, Xiaoning Wang
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0092707

Epigenetic Silencing of TFPI-2 in Canine Diffuse Large B-Cell Lymphoma
Cited by: 32
Author(s): Serena Ferraresso, Silvia Bresolin, Arianna Aricò, S. Comazzi, Maria Elena Gelain, Fulvio Riondato, Luca Bargelloni, Laura Marconato, Geertruy te Kronnie, Luca Aresu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0118737

SNAP23 Regulates Endothelial Exocytosis of von Willebrand Factor
Cited by: 33
Author(s): Qinglin Zhu, Munekazu Yamakuchi, Charles J. Lowenstein
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0006458

Punicic Acid a Conjugated Linolenic Acid Inhibits TNFα-Induced Neutrophil Hyperactivation and Protects from Experimental Colon Inflammation in Rats
Cited by: 105
Author(s): Tarek Boussetta, Houssam Raad, Philippe Lettéron, Marie‐Anne Gougerot‐Pocidalo, Jean‐Claude Marie, Fathi Driss, Jamel El-Benna
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0122797

Identification of Novel Loci Associated with Gastrointestinal Parasite Resistance in a Red Maasai x Dorper Backcross Population
Cited by: 56
Author(s): Magda Vieira Benavides, Tad S. Sonstegard, Stephen J. Kemp, J. M. Mugambi, John P. Gibson, R.L. Baker, Olivier Hanotte, Karen Marshall, C. P. van Tassell
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0028787

Cooperative Genome-Wide Analysis Shows Increased Homozygosity in Early Onset Parkinson's Disease
Cited by: 22
Author(s): Javier Simón‐Sánchez, Laura L. Kilarski, Michael A. Nalls, María Martínez, Claudia Schulte, Peter Alan Holmans, Thomas Gasser, John Hardy, Andrew B. Singleton, Nicholas W. Wood, Alexis Brice, Peter Heutink, Nigel Williams, Huw R. Morris
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0030677

ISL1 Directly Regulates FGF10 Transcription during Human Cardiac Outflow Formation
Cited by: 43
Author(s): Christelle Golzio, Emmanuelle Havis, Philippe Daubas, Grégory Nuel, Candice Babarit, Arnold Münnich, Michel Vekemans, Stéphane Zaffran, Stanislas Lyonnet, Heather C. Etchevers
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0008693

Genome-Wide Analyses of Gene Expression during Mouse Endochondral Ossification
Cited by: 47
Author(s): Claudine G. James, Lee‐Anne Stanton, Hanga Agoston, Veronica Ulici, T. Michael Underhill, Frank Beier
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0205109

Functional analysis of a triplet deletion in the gene encoding the sodium glucose transporter 3, a potential risk factor for ADHD
Cited by: 5
Author(s): Nadine Schäfer, M Friedrich, Morten Jørgensen, Sina Kollert, Hermann Koepsell, Erhard Wischmeyer, Klaus‐Peter Lesch, Dietmar Geiger, Frank Döring
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0016685

Detection and Removal of Biases in the Analysis of Next-Generation Sequencing Reads
Cited by: 88
Author(s): Schraga Schwartz, Oren Ram, Gil Ast
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0042371

Mating of the Stichotrichous Ciliate Oxytricha trifallax Induces Production of a Class of 27 nt Small RNAs Derived from the Parental Macronucleus
Cited by: 40
Author(s): Alan M. Zahler, Zachary T. Neeb, Athena W. Lin, Sol Katzman
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0201041

Diagnostic value of partial exome sequencing in developmental disorders
Cited by: 33
Author(s): Laura Gieldon, Luisa Mackenroth, Anne‐Karin Kahlert, Johannes R. Lemke, Joseph Porrmann, Jens Schallner, Maja von der Hagen, Susanne Markus, Sabine Weidensee, Barbara Novotna, Charlotte Soerensen, Barbara Klink, Johannes Maximilian Wagner, Andreas Tzschach, Arne Jahn, Franziska Kuhlee, Karl Hackmann, Evelin Schröck, Nataliya Di Donato, Andreas Rump
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0059577

The Turkey Ig-Like Receptor Family: Identification, Expression and Function
Cited by: 10
Author(s): Katharina Windau, Birgit C. Viertlboeck, Thomas Göbel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0004496

Genetic Variants of Wnt Transcription Factor TCF-4 (TCF7L2) Putative Promoter Region Are Associated with Small Intestinal Crohn's Disease
Cited by: 126
Author(s): Maureen J. Koslowski, I. Kübler, Mathias Chamaillard, Elke Schaeffeler, Walter Reinisch, Guoxing Wang, Julia Beisner, Alexander Teml, Laurent Peyrin–Biroulet, Stefan Winter, Klaus Herrlinger, Paul Rutgeerts, Séverine Vermeire, Rachel Cooney, Klaus Fellermann, D P Jewell, Charles L. Bevins, Matthias Schwab, Eduard F. Stange, Jan Wehkamp
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0060465

Gene Regulation by CcpA and Catabolite Repression Explored by RNA-Seq in Streptococcus mutans
Cited by: 64
Author(s): Lin Zeng, Sang Chul Choi, Charles G. Danko, Adam Siepel, Michael J. Stanhope, Robert A. Burne
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0008743

Enhanced Binding of Poly(ADP-ribose)polymerase-1 and Ku80/70 to the ITGA2 Promoter via an Extended Cytosine-Adenosine Repeat
Cited by: 11
Author(s): Yann Chéli, Shirley Williams, Robert Ballotti, Diane J. Nugent, Thomas J. Kunicki
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0077224

Alternative 5’ Untranslated Regions Are Involved in Expression Regulation of Human Heme Oxygenase-1
Cited by: 39
Author(s): Marcel Kramer, Christoph Sponholz, Monique Slaba, Bianka Wissuwa, Ralf A. Claus, Uwe Menzel, Klaus Huse, Matthias Platzer, Michael Bauer
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0136227

Hepatitis C Virus Driven AXL Expression Suppresses the Hepatic Type I Interferon Response
Cited by: 17
Author(s): Scott A. Read, Enoch Tay, Mahsa Shahidi, K. O'Connor, David R. Booth, Jacob George, Mark W. Douglas
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0115358

Genome-Wide H3K4me3 Analysis in Angus Cattle with Divergent Tenderness
Cited by: 14
Author(s): Chunping Zhao, José A. Carrillo, Fei Tian, Zan Liu, Scott M. Updike, Keji Zhao, Fei Zhan, Jiuzhou Song
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0121748

Sepsis Induces Specific Changes in Histone Modification Patterns in Human Monocytes
Cited by: 38
Author(s): Sebastian Weiterer, Florian Uhle, Christoph Lichtenstern, Benedikt Hermann Siegler, Sabin Bhuju, Michael Jarek, Marek Bartkuhn, Markus Weigand
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0147697

MutAid: Sanger and NGS Based Integrated Pipeline for Mutation Identification, Validation and Annotation in Human Molecular Genetics
Cited by: 5
Author(s): Ram Vinay Pandey, Stephan Pabinger, Albert Kriegner, Andreas Weinhäusel
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0111362

Synergistic Effect of High Charge and Energy Particle Radiation and Chronological Age on Biomarkers of Oxidative Stress and Tissue Degeneration: A Ground-Based Study Using the Vertebrate Laboratory Model Organism Oryzias latipes
Cited by: 5
Author(s): Xuan Zheng, Xinyan Zhang, Lingling Ding, Jeffrey R. Lee, Paul M. Weinberger, William S. Dynan
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0014697

ENCODE Tiling Array Analysis Identifies Differentially Expressed Annotated and Novel 5′ Capped RNAs in Hepatitis C Infected Liver
Cited by: 19
Author(s): Milan E. Folkers, Don A. Delker, Christopher I. Maxwell, Cassie A. Nelson, Jason J. Schwartz, David A. Nix, Curt H. Hagedorn
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0235857

Broadening our understanding of the genetics of Juvenile Idiopathic Arthritis (JIA): Interrogation of three dimensional chromatin structures and genetic regulatory elements within JIA-associated risk loci
Cited by: 5
Author(s): Kaiyu Jiang, Haeja Kessler, Yungki Park, Marc Sudman, Susan D. Thompson, James N. Jarvis
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0177406

Differential DNA methylation of MSI2 and its correlation with diabetic traits
Cited by: 14
Author(s): Jae‐Pil Jeon, In-Uk Koh, Nak-Hyun Choi, Bong-Jo Kim, Bok‐Ghee Han, Suman Lee
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0222788

Additive and heterozygous (dis)advantage GWAS models reveal candidate genes involved in the genotypic variation of maize hybrids to Azospirillum brasilense
Cited by: 17
Author(s): Miriam Suzane Vidotti, Danilo Hottis Lyra, Júlia Silva Morosini, Ítalo Stefanine Correia Granato, Maria Carolina Quecine, João Lúcio de Azevedo, Roberto Fritsche‐Neto
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0045173

Stem Cell Selection In Vivo Using Foamy Vectors Cures Canine Pyruvate Kinase Deficiency
Cited by: 23
Author(s): Grant D. Trobridge, Brian C. Beard, Ryan Wu, Christina Ironside, Punam Malik, Hans Peter Kiem
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0088880

Computational Characterization of Modes of Transcriptional Regulation of Nuclear Receptor Genes
Cited by: 6
Author(s): Yogita Sharma, Chandra Sekhar Reddy Chilamakuri, Marit Bakke, Boris Lenhard
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0016330

Genome-Wide Analysis of Transcriptional Reprogramming in Mouse Models of Acute Myeloid Leukaemia
Cited by: 29
Author(s): Nicolas Bonadies, Samuel D. Foster, Wai In Chan, Brynn T. Kvinlaug, Dominik Spensberger, Mark A. Dawson, Elaine Spooncer, Anthony D. Whetton, Andrew J. Bannister, Brian J. P. Huntly, Berthold Göttgens
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0066722

DNA Methylation Patterns Facilitate the Identification of MicroRNA Transcription Start Sites: A Brain-Specific Study
Cited by: 8
Author(s): Tapas Bhadra, Malay Bhattacharyya, Lars Feuerbach, Thomas Lengauer, Sanghamitra Bandyopadhyay
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0211111

HIV-1 infection increases microRNAs that inhibit Dicer1, HRB and HIV-EP2, thereby reducing viral replication
Cited by: 18
Author(s): Shira Modai, Luba Farberov, Eytan Herzig, Ofer Isakov, Amnon Hizi, Noam Shomron
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0182946

Whole gene sequencing identifies deep-intronic variants with potential functional impact in patients with hypertrophic cardiomyopathy
Cited by: 26
Author(s): Rita Mendes de Almeida, Joana Tavares, Sandra Martins, Tereza Cristina de Carvalho, Francisco J. Enguita, Dulce Brito, Maria Carmo‐Fonseca, Luís Rocha Lopes
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0091793

The Cellular Distribution and Ser262 Phosphorylation of Tau Protein Are Regulated by BDNF In Vitro
Cited by: 19
Author(s): Qian Chen, Zhou Zhou, Lei Zhang, Shangcheng Xu, Chunhai Chen, Zhengping Yu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0011474

Worldwide Distribution of the MYH9 Kidney Disease Susceptibility Alleles and Haplotypes: Evidence of Historical Selection in Africa
Cited by: 33
Author(s): Tarás K. Oleksyk, George W. Nelson, Ping An, Jeffrey B. Kopp, Cheryl A. Winkler
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0007904

Epigenetic Features of Human Mesenchymal Stem Cells Determine Their Permissiveness for Induction of Relevant Transcriptional Changes by SYT-SSX1
Cited by: 42
Author(s): Luisa Cironi, Paolo Provero, Nicola Riggi, Michalina Janiszewska, Domizio Suvà, Mario-Luca Suvà, Vincent Kindler, Ivan Stamenkovic
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0009679

FragKB: Structural and Literature Annotation Resource of Conserved Peptide Fragments and Residues
Cited by: 7
Author(s): Ashish V. Tendulkar, Martin Krallinger, Victor de la Torre, Gonzalo López, Pramod P. Wangikar, Alfonso Valencia
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0021975

Lentiviral Mediated Transgenesis by In Vivo Manipulation of Spermatogonial Stem Cells
Cited by: 26
Author(s): Lalit Sehgal, Rahul Thorat, Nileema Khapare, Amitabha Mukhopadhaya, Mayur Sawant, Sorab N. Dalal
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0019304

Diagnosis of Indian Visceral Leishmaniasis by Nucleic Acid Detection Using PCR
Cited by: 69
Author(s): Pankaj Srivastava, Sanjana Mehrotra, Puja Tiwary, Jaya Chakravarty, Shyam Sundar
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0153453

An Improved microRNA Annotation of the Canine Genome
Cited by: 20
Author(s): Luca Penso-Dolfin, Ross Swofford, Jeremy Johnson, Jessica Alföldi, Kerstin Lindblad‐Toh, David Swarbreck, Simon Moxon, Federica Di Palma
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0001803

Integrative Genome-Wide Expression Analysis Bears Evidence of Estrogen Receptor-Independent Transcription in Heregulin-Stimulated MCF-7 Cells
Cited by: 7
Author(s): Takeshi Nagashima, Tsuyoshi Suzuki, Shinji Kondo, Yoshio Kuroki, Kaoru Takahashi, Kaori Ide, Noriko Yumoto, Asako Hasegawa, Tetsuro Toyoda, Toshio Kojima, Akihiko Konagaya, Harukazu Suzuki, Yoshihide Hayashizaki, Yoshiyuki Sakaki, Mariko Hatakeyama
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0049705

Whole-Transcriptome Sequencing Identifies Novel IRF2BP2-CDX1 Fusion Gene Brought about by Translocation t(1;5)(q42;q32) in Mesenchymal Chondrosarcoma
Cited by: 75
Author(s): Kaja Beate Nyquist, Ioannis Panagopoulos, Jim Thorsen, Lisbeth Haugom, Ludmila Gorunova, Bodil Bjerkehagen, Alexander Fosså, Marianne Guriby, Torfinn Nome, Ragnhild Lothe, Rolf Inge Skotheim, Sverre Heim, Francesca Micci
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0171262

Serum response factor regulates smooth muscle contractility via myotonic dystrophy protein kinases and L-type calcium channels
Cited by: 21
Author(s): Moon Young Lee, Chanjae Park, Se Eun Ha, Paul J. Park, Robyn M. Berent, Brian G. Jorgensen, Robert D. Corrigan, Nathan Grainger, Peter J. Blair, Orazio J. Slivano, Joseph M. Miano, Sean M. Ward, Terence K. Smith, Kenton M. Sanders, Seungil Ro
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0219576

Distribution of endogenous gammaretroviruses and variants of the Fv1 restriction gene in individual mouse strains and strain subgroups
Cited by: 3
Author(s): Matthew Skorski, Devinka Bamunusinghe, Qingping Liu, Esther Shaffer, Christine A. Kozak
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0045364

5-Aza-2′-deoxycytidine Leads to Reduced Embryo Implantation and Reduced Expression of DNA Methyltransferases and Essential Endometrial Genes
Cited by: 43
Author(s): Yubin Ding, Long Chen, Xueqing Liu, Xuemei Chen, Liang-Rui Guo, Yinyin Xia, Junlin He, Yingxiong Wang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0103020

IthaGenes: An Interactive Database for Haemoglobin Variations and Epidemiology
Cited by: 155
Author(s): Petros Kountouris, Carsten W. Lederer, Pavlos Fanis, Xenia Feleki, John Old, Marina Kleanthous
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0218386

Effects of cessation of cigarette smoking on eicosanoid biomarkers of inflammation and oxidative damage
Cited by: 17
Author(s): Joseph P. McElroy, Steven G. Carmella, Alisa K. Heskin, Man‐Lai Tang, Sharon E. Murphy, Sarah A. Reisinger, Joni Jensen, Dorothy K. Hatsukami, Stephen S. Hecht, Peter G. Shields
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0019212

Domestication of Transposable Elements into MicroRNA Genes in Plants
Cited by: 94
Author(s): Li V. Yang, Chaoqun Li, Jie Xia, Youxin Jin
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0040959

Gene Expression Profiling Identifies HOXB4 as a Direct Downstream Target of GATA-2 in Human CD34+ Hematopoietic Cells
Cited by: 15
Author(s): Tohru Fujiwara, Hisayuki Yokoyama, Yoko Okitsu, Makoto Kamata, Noriko Fukuhara, Yasushi Onishi, Shin Fujimaki, Shinichiro Takahashi, Kenichi Ishizawa, Emery H. Bresnick, Hideo Harigae
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0032590

Gene Expression of the Tumour Suppressor LKB1 Is Mediated by Sp1, NF-Y and FOXO Transcription Factors
Cited by: 34
Author(s): Nicolas Lützner, Johanna De-Castro Arce, Frank Rösl
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0042180

An Overgrowth Disorder Associated with Excessive Production of cGMP Due to a Gain-of-Function Mutation of the Natriuretic Peptide Receptor 2 Gene
Cited by: 95
Author(s): Kouji Miura, Noriyuki Namba, M. Fujiwara, Yasuhisa Ohata, Hidekazu Ishida, Taichi Kitaoka, Takuo Kubota, Haruhiko Hirai, Chikahisa Higuchi, Noriyuki Tsumaki, Hideki Yoshikawa, Norio Sakai, Toshimi Michigami, Keiichi Ozono
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0133988

Social Exclusion Changes Histone Modifications H3K4me3 and H3K27ac in Liver Tissue of Wild House Mice
Cited by: 3
Author(s): Linda Krause, Bernhard Haubold, Angelika Börsch-Haubold
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0035839

The RIP140 Gene Is a Transcriptional Target of E2F1
Cited by: 22
Author(s): Aurélie Docquier, Patrick Augereau, Marion Lapierre, Pierre-Olivier Harmand, Éric Badia, Jean-Sébastien Annicotte, Lluís Fajas, Vincent Cavaillès
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0165559

Genetic and Epigenetic Regulation of TOX3 Expression in Breast Cancer
Cited by: 23
Author(s): Yoo-Jeong Han, Jing Zhang, Yonglan Zheng, Dezheng Huo, Olufunmilayo I. Olopade
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0019174

Ascl1/Mash1 Is a Novel Target of Gli2 during Gli2-Induced Neurogenesis in P19 EC Cells
Cited by: 47
Author(s): Anastassia Voronova, Fischer Anna, Ryan Tj, Ashraf Al Madhoun, Ilona S. Skerjanc
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0019891

Physical Confirmation and Mapping of Overlapping Rat Mammary Carcinoma Susceptibility QTLs, Mcs2 and Mcs6
Cited by: 8
Author(s): Jennifer Sanders, Jill D. Haag, David J. Samuelson
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0105382

Copy Number Variation Analysis on a Non-Hodgkin Lymphoma Case-Control Study Identifies an 11q25 Duplication Associated with Diffuse Large B-Cell Lymphoma
Cited by: 17
Author(s): Lucía Conde, Jacques Riby, Jianqing Zhang, Paige M. Bracci, Christine F. Skibola
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0136749

Genome-Wide Scan for Visceral Leishmaniasis in Mixed-Breed Dogs Identifies Candidate Genes Involved in T Helper Cells and Macrophage Signaling
Cited by: 19
Author(s): Yuri Tani Utsunomiya, Érica S. Ribeiro, Amanda Pífano Neto Quintal, Juliano Rodrigues Sangalli, Valquiria R. Gazola, Henrique Borges de Paula, Cristiana T. Trinconi, Valéria Marçal Felix de Lima, S. H. V. Perri, Jeremy F. Taylor, Robert D. Schnabel, Tad S. Sonstegard, José Fernando Garcia, Cáris Maroni Nunes
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0000643

The Cis-regulatory Logic of the Mammalian Photoreceptor Transcriptional Network
Cited by: 136
Author(s): Timothy H.-C. Hsiau, Claudiu Diaconu, Connie A. Myers, Jongwoo Lee, Constance L. Cepko, Joseph C. Corbo
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.pone.0143212

GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana
Cited by: 23
Author(s): Johanna A. Bac-Molenaar, E.F. Fradin, Juriaan Rienstra, D. Vreugdenhil, Joost J. B. Keurentjes
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0018969

Variation in Array Size, Monomer Composition and Expression of the Macrosatellite DXZ4
Cited by: 19
Author(s): Deanna C. Tremblay, Shawn C. Moseley, Brian P. Chadwick
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0075344

Integration Profile and Safety of an Adenovirus Hybrid-Vector Utilizing Hyperactive Sleeping Beauty Transposase for Somatic Integration
Cited by: 33
Author(s): Wenli Zhang, Martin Mück-Häusl, Jichang Wang, Chuanbo Sun, Maren Gebbing, Csaba Miskey, Zoltán Ivics, Zsuzsanna Izsvák, Anja Ehrhardt
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0129811

A Novel Locus for Ectodermal Dysplasia of Hair, Nail and Skin Pigmentation Anomalies Maps to Chromosome 18p11.32-p11.31
Cited by: 2
Author(s): Rabia Habib, Muhammad Ansar, Manuel Mattheisen, Muhammad Shahid, Ghazanfar Ali, Wasim Ahmad, Regina C. Betz
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0105723

Effects of GWAS-Associated Genetic Variants on lncRNAs within IBD and T1D Candidate Loci
Cited by: 69
Author(s): Aashiq H. Mirza, Simranjeet Kaur, Caroline Brorsson, Flemming Pociot
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0108652

Genome-Wide Mapping of Yeast Histone Chaperone Anti-Silencing Function 1 Reveals Its Role in Condensin Binding with Chromatin
Cited by: 7
Author(s): Pooran Singh Dewari, Poonam Bhargava
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0153333

Neofunctionalization of Chromoplast Specific Lycopene Beta Cyclase Gene (CYC-B) in Tomato Clade
Cited by: 13
Author(s): Vijee Mohan, Arun K. Pandey, Yellamaraju Sreelakshmi, Rameshwar Sharma
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0000658

A Unique Role for Nonmuscle Myosin Heavy Chain IIA in Regulation of Epithelial Apical Junctions
Cited by: 144
Author(s): Andrei I. Ivanov, Moshe Bachar, Brian A. Babbin, Robert S. Adelstein, Asma Nusrat, Charles A. Parkos
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.pone.0207984

Leucine rich repeat kinase 2 (LRRK2) GLY2019SER mutation is absent in a second cohort of Nigerian Africans with Parkinson disease
Cited by: 16
Author(s): Njideka Okubadejo, Mie Rizig, Oluwadamilola O. Ojo, Hallgeir Jonvik, Olajumoke Oshinaike, Emmeline Brown, Henry Houlden
Software Mentions: 1
Published: over 7 years ago

10.1093/database/baz018

FairBase: a comprehensive database of fungal A-to-I RNA editing
Cited by: 7
Author(s): Jinding Liu, Dongbo Wang, Yin-Na Su, Kun Lang, Rongjing Duan, Yufeng Wu, Fei Ma, Shuiqing Huang
Software Mentions: 1
Published: over 7 years ago

10.1093/database/bau091

An online system for metabolic network analysis
Cited by: 7
Author(s): A. Ercüment Çiçek, Xin Qi, Ali Çakmak, Stephen R. Johnson, Han Xu, Sami Alshalwi, Z. Meral Özsoyoğlu, Gültekin Özsoyoğlu
Software Mentions: 1
Published: almost 12 years ago

10.1093/database/bau062

UCbase 2.0: ultraconserved sequences database (2014 update)
Cited by: 18
Author(s): Vincenzo Lomonaco, Riccardo Martoglia, Federica Mandreoli, Laura Anderlucci, Warren Emmett, Silvio Bicciato, Cristian Taccioli
Software Mentions: 1
Published: about 12 years ago

10.1016/j.ydbio.2010.07.007

Pax2 coordinates epithelial morphogenesis and cell fate in the inner ear
Cited by: 61
Author(s): Nicolas Christophorou, Michael Mende, Laura Lleras-Forero, Timothy Grocott, Andrea Streit
Software Mentions: 1
Published: about 16 years ago

10.1016/j.devcel.2011.04.008

Genome-wide Analysis of Simultaneous GATA1/2, RUNX1, FLI1, and SCL Binding in Megakaryocytes Identifies Hematopoietic Regulators
Cited by: 236
Author(s): Marloes R. Tijssen, Ana Cvejic, Anagha Joshi, Rebecca Hannah, Rita Ferreira, Ariel Forrai, Dana Bellissimo, S. Helen Oram, Peter A. Smethurst, Nicola K. Wilson, Xiaonan Wang, Katrin Ottersbach, Derek L. Stemple, Anthony Green, Willem H. Ouwehand, Berthold Göttgens
Software Mentions: 1
Published: over 15 years ago

10.1016/j.dci.2010.09.013

Identification and characterisation of the BPI/LBP/PLUNC-like gene repertoire in chickens reveals the absence of a LBP gene
Cited by: 29
Author(s): Shih‐Chieh Chiang, Edwin J.A. Veldhuizen, Frances A. Barnes, C. Jeremy Craven, Henk P. Haagsman, Colin D. Bingle
Software Mentions: 1
Published: over 15 years ago

10.1002/dvdy.69

A novel conserved enhancer at zebrafish zic3 and zic6 loci drives neural expression
Cited by: 1
Author(s): Rashid Minhas, Aleksandra Paterek, Maciej Łapiński, Michał A. Bazała, Vladimir Korzh, Cecilia Lanny Winata
Software Mentions: 1
Published: about 7 years ago

10.1111/dgd.12239

Identification and functional characterization of novel transcriptional enhancers involved in regulating human<i><scp>GLI</scp>3</i>expression during early development
Cited by: 6
Author(s): Saneela Anwar, Rashid Minhas, Shahid Ali, Nicholas A. Lambert, Yasuhiko Kawakami, Greg Elgar, Syed Sikander Azam, Amir Ali Abbasi
Software Mentions: 1
Published: almost 11 years ago

10.1242/dmm.037655

CRISPR/Cas9-generated mouse model of Duchenne muscular dystrophy recapitulating a newly identified large 430 kb deletion in the human <i>DMD</i> gene
Cited by: 27
Author(s): Т. В. Егорова, Evgenia Zotova, Denis A. Reshetov, Anna V. Polikarpova, Svetlana G. Vassilieva, D. Vlodavets, А. В. Гаврилов, Sergey V. Ulianov, Vladimir L. Buchman, Alexey V. Deykin
Software Mentions: 1
Published: over 7 years ago

10.15252/embj.201592534

Inducible chromatin priming is associated with the establishment of immunological memory in T cells
Cited by: 87
Author(s): Sarah L Bevington, Pierre Cauchy, Jason Piper, Elisabeth Bertrand, Naveen Lalli, Rebecca C Jarvis, Liam Niall Gilding, Sascha Ott, Constanze Bonifer, Peter N. Cockerill
Software Mentions: 1
Published: over 10 years ago

10.15252/embj.201590973

Synthetic viability genomic screening defines Sae2 function in DNA repair
Cited by: 38
Author(s): Fabio Puddu, Tobias Oelschlaegel, Ilaria Guerini, Nicola J. Geisler, Hengyao Niu, Mareike Herzog, Israel Salguero, Bernardo Ochoa‐Montaño, Emmanuelle Viré, Patrick Sung, David J. Adams, Thomas M. Keane, Stephen Jackson
Software Mentions: 1
Published: over 11 years ago

10.15252/embj.201796729

<scp>hDNA</scp> 2 nuclease/helicase promotes centromeric <scp>DNA</scp> replication and genome stability
Cited by: 36
Author(s): Zhengke Li, Bochao Liu, Weiwei Jin, Xiwei Wu, Mian Zhou, Vincent Wenzhe Liu, Ajay Goel, Zhiyuan Shen, Li Zheng, Binghui Shen
Software Mentions: 1
Published: over 8 years ago

10.15252/emmm.201606345

CoQ deficiency causes disruption of mitochondrial sulfide oxidation, a new pathomechanism associated with this syndrome
Cited by: 58
Author(s): Marta Luna-Sánchez, Agustín Hidalgo‐Gutiérrez, Tatjana M. Hildebrandt, Julio Chaves-Serrano, Eliana Barriocanal‐Casado, A. Santos-Fandila, Miguel Romero, Ramy K. A. Sayed, Juan Duarte, Holger Prokisch, Markus Schuelke, Felix Distelmaier, Germaine Escames, Darío Acuña‐Castroviejo, Luís C. López
Software Mentions: 1
Published: almost 10 years ago

10.1186/1476-069X-13-34

Genetic variation in the CYP2B6 Gene is related to circulating 2,2’,4,4’-tetrabromodiphenyl ether (BDE-47) concentrations: an observational population-based study
Cited by: 9
Author(s): Johanna Penell, Lars Lind, Tove Fall, Anne-Christine Syvänen, Tomas Axelsson, Per Lundmark, Andrew P. Morris, Cecilia M. Lindgren, Anubha Mahajan, Samira Salihović, Bert van Bavel, Erik Ingelsson, P. Monica Lind
Software Mentions: 1
Published: over 12 years ago

10.1080/15592294.2015.1062963

Placental 5-methylcytosine and 5-hydroxymethylcytosine patterns associate with size at birth
Cited by: 17
Author(s): Chinthika Piyasena, Rebecca M. Reynolds, Batbayar Khulan, Jonathan R. Seckl, Gopi Menon, Amanda J. Drake
Software Mentions: 1
Published: about 11 years ago

10.1186/1756-8935-4-13

The relationship between transcription initiation RNAs and CCCTC-binding factor (CTCF) localization
Cited by: 40
Author(s): Ryan J. Taft, Peter G. Hawkins, John S. Mattick, Kevin V. Morris
Software Mentions: 1
Published: about 15 years ago

10.1186/1756-8935-7-28

Meta-analysis of human methylomes reveals stably methylated sequences surrounding CpG islands associated with high gene expression
Cited by: 71
Author(s): Rachel D. Edgar, Powell Patrick Cheng Tan, Élodie Portales-Casamar, Paul Pavlidis
Software Mentions: 1
Published: almost 12 years ago

10.1038/ejhg.2014.296

Genome-wide analysis identifies a role for common copy number variants in specific language impairment
Cited by: 41
Author(s): Nuala H. Simpson, Fabiola Ceroni, Rose H. Reader, Laura Covill, Julian C. Knight, Elizabeth R Hennessy, Patrick Bolton, Gina Conti‐Ramsden, Anne O’Hare, Gillian Baird, Simon E. Fisher, Dianne F. Newbury
Software Mentions: 1
Published: over 11 years ago

10.1186/s41824-019-0057-3

ROC study and SUV threshold using quantitative multi-modal SPECT for bone imaging
Cited by: 13
Author(s): A. Hans Vija, Peter Bartenstein, Jerry W. Froelich, Torsten Kuwert, Homer A. Macapinlac, Cory P. Daignault, Naveen Gowda, Orlin Hadjiev, Julie Hephzibah, Peng Huang, Harun Ilhan, Aaron Jessop, Michal Cachovan, Jun Ma, Xiaoming Ding, Don Spence, Günther Platsch, Zsolt Szabó
Software Mentions: 1
Published: about 7 years ago

10.1186/2041-9139-5-20

Genome-wide survey and expression analysis of the bHLH-PAS genes in the amphioxus Branchiostoma floridae reveal both conserved and diverged expression patterns between cephalochordates and vertebrates
Cited by: 10
Author(s): Kun-Lung Li, Tsai-Ming Lu, Jr-Kai Yu
Software Mentions: 1
Published: about 12 years ago

10.1186/s13227-016-0051-9

Developmental expression of “germline”- and “sex determination”-related genes in the ctenophore Mnemiopsis leidyi
Cited by: 24
Author(s): Adam M. Reitzel, Kevin Pang, Mark Q. Martindale
Software Mentions: 1
Published: about 10 years ago

10.1038/s12276-021-00586-y

A study of transposable element-associated structural variations (TASVs) using a de novo-assembled Korean genome
Cited by: 7
Author(s): Seyoung Mun, Songmi Kim, Wooseok Lee, Keunsoo Kang, Thomas J. Meyer, Bok‐Ghee Han, Kyudong Han, Heui‐Soo Kim
Software Mentions: 1
Published: over 5 years ago

10.12688/f1000research.5923.2

Development of an image-based screening system for inhibitors of the plastidial MEP pathway and of protein geranylgeranylation
Cited by: 1
Author(s): Michael Hartmann, Elisabet Gas‐Pascual, Andréa Hemmerlin, Michel Rohmer, Thomas J. Bach
Software Mentions: 1
Published: about 11 years ago

10.12688/f1000research.3-48.v1

HeatMapViewer: interactive display of 2D data in biology
Cited by: 17
Author(s): Guy Yachdav, Maximilian Hecht, Metsada Pasmanik‐Chor, Adva Yeheskel, Burkhard Rost
Software Mentions: 1
Published: over 12 years ago

10.1093/femsyr/fox074

Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D
Cited by: 74
Author(s): Alex N. Salazar, Arthur R. Gorter de Vries, Marcel van den Broek, Melanie Wijsman, Pilar de la Torre Cortés, Anja Brickwedde, Nick Brouwers, Jean‐Marc Daran, Thomas Abeel
Software Mentions: 1
Published: almost 9 years ago

10.3389/fbioe.2020.00088

Genome-Wide DNA Methylation Enhances Stemness in the Mechanical Selection of Tumor-Repopulating Cells
Cited by: 10
Author(s): Wei Huang, Hui Hu, Qiong Zhang, Ning Wang, Xiangliang Yang, An‐Yuan Guo
Software Mentions: 1
Published: over 6 years ago

10.3389/fcvm.2019.00080

Inherited Thrombocytopenia: Update on Genes and Genetic Variants Which may be Associated With Bleeding
Cited by: 38
Author(s): Ibrahim Almazni, Rachel J Stapley, Neil V. Morgan
Software Mentions: 1
Published: about 7 years ago

10.3389/fcell.2021.676543

Imprinted Gene Expression and Function of the Dopa Decarboxylase Gene in the Developing Heart
Cited by: 7
Author(s): Adam Prickett, Bertille Montibus, Nikolaos Barkas, Samuele M. Amante, M. M. Franco, Michael Cowley, William Puszyk, Matthew F. Shannon, Melita Irving, Marta Madon-Simon, Andrew Ward, Reiner Schulz, H. Scott Baldwin, Rebecca J. Oakey
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2019.00364

Histone H3 Lysine 56 Acetylation Is Required for Formation of Normal Levels of Meiotic DNA Breaks in S. cerevisiae
Cited by: 6
Author(s): Zsolt Karányi, Lilla Hornyák, Lóránt Székvölgyi
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2019.00013

Expanding the CRISPR Toolbox in Zebrafish for Studying Development and Disease
Cited by: 93
Author(s): Kaili Liu, Cassidy Petree, Teresa Requena, Pratishtha Varshney, Gaurav K. Varshney
Software Mentions: 1
Published: over 7 years ago

10.3389/fcell.2021.700029

LncRNA DGCR5 Isoform-1 Silencing Suppresses the Malignant Phenotype of Clear Cell Renal Cell Carcinoma via miR-211-5p/Snail Signal Axis
Cited by: 9
Author(s): Guangxin Zhong, Dan Luo, Yijun Fan, Jue Wang, Bingqiang Liu, Zhonghua Xu, Xiang Zhang
Software Mentions: 1
Published: about 5 years ago

10.3389/fcimb.2019.00175

Diverse Papillomavirus Types Induce Endosomal Tubulation
Cited by: 4
Author(s): Abida Siddiqa, Paola Massimi, David Pim, Lawrence Banks
Software Mentions: 1
Published: over 7 years ago

10.3389/fncel.2015.00142

Inducible and combinatorial gene manipulation in mouse brain
Cited by: 10
Author(s): Godwin Dogbevia, Ricardo Marticorena-Alvarez, Melanie Bausen, Rolf Sprengel, Mazahir T. Hasan
Software Mentions: 1
Published: over 11 years ago

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