Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: browser

https://packages.ecosyste.ms/registries/pypi.org/packages/browser

A package to prevent Dependency Confusion attacks against Yandex.
2 versions
Latest release: over 1 year ago
2 dependent packages

Papers Mentioning browser 2,125

10.1038/s41598-018-22010-8
Egr2-dependent microRNA-138 is dispensable for peripheral nerve myelination
Cited by: 11
Author(s): Hsin Pin Lin, Idil Oksuz, John Svaren, Rajeshwar Awatramani
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-23289-3
The transcriptional profiles and functional implications of long non-coding RNAs in the unfolded protein response
Cited by: 9
Author(s): Hongyang Quan, Qianqian Fan, Chuang Li, Yanying Wang, Lin Wang
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-25001-x
Application of droplet digital PCR in the analysis of genome integration and organization of the transgene in BAC transgenic mice
Cited by: 2
Author(s): Ayumi Nakagaki, Asuka Urakawa, Shiori Hirano, Takeru Anami, Tatsuya Kishino
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-25290-2
Bidirectional regulation of bone formation by exogenous and osteosarcoma-derived Sema3A
Cited by: 6
Author(s): Daniëlle de Ridder, Silvia Marino, Ryan T. Bishop, Nathalie Renema, Chantal Chenu, Dominique Heymann, Aymen I. Idris
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-27104-x
Blocking the 5′ splice site of exon 4 by a morpholino oligomer triggers APOL1 protein isoform switch
Cited by: 9
Author(s): Amber M. Cheatham, Shamara E. Davis, Atanu K. Khatua, Waldemar Popik
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-27360-x
Male mice with large inversions or deletions of X-chromosome palindrome arms are fertile and express their associated genes during post-meiosis
Cited by: 9
Author(s): Alyssa N. Kruger, Quinn Ellison, Michele Brogley, Emma R. Gerlinger, Jacob L. Mueller
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-30238-7
Identification and characterization of TP53 gene Allele Dropout in Li-Fraumeni syndrome and Oral cancer cohorts
Cited by: 5
Author(s): Mohammed Moquitul Haque, Pradnya Kowtal, Rajiv Sarin
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-018-31968-4
Investigation of hindbrain activity during active locomotion reveals inhibitory neurons involved in sensorimotor processing
Cited by: 24
Author(s): Kristen E. Severi, Urs Lucas Böhm, Claire Wyart
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-31785-9
The acetylation of cyclin-dependent kinase 5 at lysine 33 regulates kinase activity and neurite length in hippocampal neurons
Cited by: 17
Author(s): Juhyung Lee, Yeon Uk Ko, Yuhyun Chung, Nuri Yun, Myung-Jin Kim, Kyungjin Kim, Young Jun Oh
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-33235-y
An Evolutionarily Conserved Mesodermal Enhancer in Vertebrate Zic3
Cited by: 3
Author(s): Yuri S. Odaka, Takahide Tohmonda, Atsushi Toyoda, Jun Aruga
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-34078-3
Multi-population genomic analysis of malaria parasites indicates local selection and differentiation at the gdv1 locus regulating sexual development
Cited by: 27
Author(s): Craig W. Duffy, Alfred Amambua-Ngwa, Ambroise D. Ahouidi, Mahamadou Diakité, Gordon A. Awandare, Hampâté Bâ, Sarah J. Tarr, Lee G. Murray, Lindsay B. Stewart, Umberto D’Alessandro, Thomas D. Otto, Dominic Kwiatkowski, David J. Conway
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-34802-z
Conserved Noncoding Sequences Boost ADR1 and SP1 Regulated Human Swiprosin-1 Promoter Activity
Cited by: 1
Author(s): Ramesh P. Thylur, Ahn Sk, Eunhea Jung, Chang‐Duk Jun, Young-Min Hyun
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-018-35184-y
Unique, Intersecting, and Overlapping Roles of C/EBP β and CREB in Cells of the Innate Immune System
Cited by: 8
Author(s): Jason L. Larabee, G Hauck, Jimmy D. Ballard
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-019-38663-y
A genome-wide enhancer/suppressor screen for Dube3a interacting genes in Drosophila melanogaster
Cited by: 1
Author(s): Kevin A. Hope, Addison McGinn, Lawrence T. Reiter
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41598-019-39215-0
Extensive reprogramming of the nascent transcriptome during iPSC to hepatocyte differentiation
Cited by: 19
Author(s): Leena E. Viiri, Tommi Rantapero, Mostafa Kiamehr, Anna Alexanova, Mikko Oittinen, Keijo Viiri, Henri Niskanen, Matti Nykter, Minna U. Kaikkonen, Katriina Aalto‐Setälä
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-43892-2
Development and validation of a novel panel of 16 STR markers for simultaneous diagnosis of β-thalassemia, aneuploidy screening, maternal cell contamination detection and fetal sample authenticity in PND and PGD/PGS cases
Cited by: 5
Author(s): Zohreh Sharifi, Faezeh Rahiminejad, Atefeh Joudaki, Ameneh Sarhadi Bandehi, Hossein Farahzadi, Yeganeh Keshvar, Fatemeh Golnabi, Sanaz Naderi, Rasaneh Yazdani, Mehdi Shafaat, Shirin Ghadami, Maryam Abiri, Sirous Zeinali
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-019-52796-0
Upregulation of Yy1 Suppresses Dilated Cardiomyopathy caused by Ttn insufficiency
Cited by: 7
Author(s): Dan Liao, Wei-Ming Chen, Chia Yee Tan, Jing Xuan Wong, Pui Shi Chan, Lek Wen Tan, Roger Foo, Jianming Jiang
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-52528-4
Dopamine D2 receptor modulates Wnt expression and control of cell proliferation
Cited by: 23
Author(s): Fei Han, Prasad Konkalmatt, Chaitanya Mokashi, Mirgender Kumar, Yanrong Zhang, Allen Ko, Zachary J. Farino, Laureano D. Asico, Gaosi Xu, John J Gildea, Xiaoxu Zheng, Robin A. Felder, Robin Lee, Pedro A. José, Zachary Freyberg, Inés Armando
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-53458-x
Comparative genomic analysis of eutherian connexin genes
Cited by: 9
Author(s): Marko Premzl
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-54389-3
Genomes, expression profiles, and diversity of mitochondria of the White-footed Deermouse Peromyscus leucopus, reservoir of Lyme disease and other zoonoses
Cited by: 8
Author(s): Alan G. Barbour, Hanjuan Shao, Vanessa J. Cook, James G. Baldwin-Brown, Jean I. Tsao, Anthony D. Long
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-019-56276-3
Up-regulated fibronectin in 3D culture facilitates spreading of triple negative breast cancer cells on 2D through integrin β-5 and Src
Cited by: 14
Author(s): Hwa Jeong Park, David M. Helfman
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-57972-1
Transcriptional regulation of the IL-13Rα2 gene in human lung fibroblasts
Cited by: 4
Author(s): L.R.K. Penke, Hideyasu Ouchi, John D. Speth, Njira L Lugogo, Yvonne J. Huang, Steven K. Huang, Marc Peters‐Golden
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-60673-4
Genome-wide analysis of the HSP101/CLPB gene family for heat tolerance in hexaploid wheat
Cited by: 18
Author(s): Eva Erdayani, R. Nagarajan, Nathan P. Grant, Kulvinder S. Gill
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-60844-3
A Systematic Study of the Impact of Estrogens and Selective Estrogen Receptor Modulators on Prostate Cancer Cell Proliferation
Cited by: 24
Author(s): Camille Lafront, Lucas Germain, Cindy Weidmann, Étienne Audet-Walsh
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-61950-y
Visualization of Endogenous Type I TGF-β Receptor Baboon in the Drosophila Brain
Cited by: 2
Author(s): Yen-Wei Lai, Sao-Yu Chu, Jian-Chiuan Li, Po‐Lin Chen, Chunhong Chen, Hung–Hsiang Yu
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-65006-z
Critical role of SOX2–IGF2 signaling in aggressiveness of bladder cancer
Cited by: 15
Author(s): Yu Fan Chiu, Chia Chang Wu, Ming Han Kuo, Chia Cheng Miao, M. Y. Zheng, Pei-Yu Chen, Sheng Chieh Lin, Junn Liang Chang, Yuan Hung Wang, Yu‐Ting Chou
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-65913-1
Energy and nitrogenous waste from glutamate/glutamine catabolism facilitates acute osmotic adjustment in non-neuroectodermal branchial cells
Cited by: 9
Author(s): Po-Chiun Huang, Tzu Yen Liu, Marian Yong-An Hu, Isabel Casties, Yung Che Tseng
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-69885-0
Identification of epidermal differentiation genes of the tuatara provides insights into the early evolution of lepidosaurian skin
Cited by: 10
Author(s): Karin Brigit Holthaus, Lorenzo Alibardi, Erwin Tschachler, Leopold Eckhart
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-75773-4
Molecular specializations of deep cortical layer analogs in songbirds
Cited by: 15
Author(s): Alexander A. Nevue, Peter V. Lovell, Morgan Wirthlin, Claudio V. Mello
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-76959-6
Transcriptional signatures of the small intestinal mucosa in response to ethanol in transgenic mice rich in endogenous n3 fatty acids
Cited by: 3
Author(s): Josiah Hardesty, Jeffrey Warner, Ying Song, Eric C. Rouchka, Chih-Yu Chen, Jing Kang, Craig J. McClain, Dennis R. Warner, Irina Kirpich
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-020-78541-6
Computational insights into RNAi-based therapeutics for foot and mouth disease of Bos taurus
Cited by: 0
Author(s): Tanmaya Kumar Sahu, Anoop Kishor Singh Gurjar, Prabina Kumar Meher, Cini Varghese, Sudeep Marwaha, G. P. Rao, Anil Rai, Neha Guleria, Suresh H. Basagoudanavar, Aniket Sanyal, Atmakuri Ramakrishna Rao
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-020-78798-x
Enzalutamide response in a panel of prostate cancer cell lines reveals a role for glucocorticoid receptor in enzalutamide resistant disease
Cited by: 27
Author(s): Rebecca Smith, Moqing Liu, Tiera Liby, Nora Bayani, Elmar Bucher, Kami Chiotti, Daniel S. Derrick, Anne Chauchereau, Laura M. Heiser, Joshi J. Alumkal, Heidi S. Feiler, Peter R. Carroll, James E. Korkola
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-82557-x
GATA4 blocks squamous epithelial cell gene expression in human esophageal squamous cells
Cited by: 5
Author(s): Roman Stavniichuk, Ann DeLaForest, Cayla A. Thompson, James J. Miller, Rhonda F. Souza, Michele A. Battle
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-84491-4
Polymorphic variants in Sweet and Umami taste receptor genes and birthweight
Cited by: 4
Author(s): Riccardo Farinella, Ilaria Erbi, Alice Bedini, Sara Donato, Manuel Gentiluomo, Claudia Angelucci, Antonella Lupetti, Armando Cuttano, Francesca Moscuzza, Cristina Tuoni, Cosmeri Rizzato, Massimiliano Ciantelli, Daniele Campa
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-95936-1
The ABCC4 gene is associated with pyometra in golden retriever dogs
Cited by: 3
Author(s): Maja L. Arendt, Aime Ambrosen, Tove Fall, Marcin Kierczak, Katarina Tengvall, Jennifer R. S. Meadows, Åsa Karlsson, Anne-Sofie Lagerstedt, Tomas F. Bergström, Gerhard Andersson, Kerstin Lindblad‐Toh, Ragnvi Hagman
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-021-96626-8
A comparative recombination analysis of human coronaviruses and implications for the SARS-CoV-2 pandemic
Cited by: 41
Author(s): Simon Pollett, Matthew A. Conte, Mark A Sanborn, Richard G. Jarman, Grace M. Lidl, Kayvon Modjarrad, Irina Maljkovic Berry
Software Mentions: 1
Published: about 3 years ago
10.1155/2016/3675283
KCl-Dependent Release of Mitochondrial Membrane-Bound Arginase Appears to Be a Novel Variant of Arginase-II
Cited by: 1
Author(s): Sunita Mishra, Mishra Rajnikant
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41392-021-00620-5
EpiMap: Fine-tuning integrative epigenomics maps to understand complex human regulatory genomic circuitry
Cited by: 6
Author(s): Dave S. B. Hoon, Negin Rahimzadeh, Matías A. Bustos
Software Mentions: 1
Published: over 3 years ago
10.1186/s13395-019-0218-x
Development of a high-throughput screen to identify small molecule enhancers of sarcospan for the treatment of Duchenne muscular dystrophy
Cited by: 6
Author(s): Cynthia Shu, Ariana N. Kaxon-Rupp, Judd R. Collado, Robert Damoiseaux, Rachelle H. Crosbie
Software Mentions: 1
Published: almost 5 years ago
10.1186/s40064-016-2950-6
Japanese traditional dietary fungus koji Aspergillus oryzae functions as a prebiotic for Blautia coccoides through glycosylceramide: Japanese dietary fungus koji is a new prebiotic
Cited by: 37
Author(s): Hiroshi Hamajima, Haruka Matsunaga, Ayami Fujikawa, Tomoya Sato, Susumu Mitsutake, Teruyoshi Yanagita, Koji Nagao, Jiro Nakayama, Hiroshi Kitagaki
Software Mentions: 1
Published: over 8 years ago
10.1016/j.stemcr.2018.03.006
PLAG1 and USF2 Co-regulate Expression of Musashi-2 in Human Hematopoietic Stem and Progenitor Cells
Cited by: 21
Author(s): Muluken Belew, Sonam Bhatia, Ava Keyvani Chahi, Stefan Rentas, Jonathan S. Draper, Kristin J. Hope
Software Mentions: 1
Published: over 6 years ago
10.1016/j.stemcr.2020.07.007
Two Functional Axes of Feedback-Enforced PRC2 Recruitment in Mouse Embryonic Stem Cells
Cited by: 16
Author(s): Matteo Perino, Guido van Mierlo, Chet Hong Loh, Sandra M.T. Wardle, Dick W. Zijlmans, Hendrik Marks, Gert Jan C. Veenstra
Software Mentions: 1
Published: almost 4 years ago
10.1155/2013/473416
Emerging Molecular Targets for Brain Repair after Stroke
Cited by: 9
Author(s): Jerzy Krupiński, Mark Slevin
Software Mentions: 1
Published: almost 12 years ago
10.3390/toxins4090729
Interaction between Shiga Toxin and Monoclonal Antibodies: Binding Characteristics and in Vitro Neutralizing Abilities
Cited by: 31
Author(s): Letícia B. Rocha, Daniela Luz, Cláudia Trigo Pedroso de Moraes, Andressa Caravelli, Ivan Filipe de Almeida Lopes Fernandes, Beatriz E. C. Guth, Denise S. P. Q. Horton, Roxane Maria Fontes Piazza
Software Mentions: 1
Published: about 12 years ago
10.1038/tp.2015.63
Epigenetic modifications of the glucocorticoid receptor gene are associated with the vulnerability to psychopathology in childhood maltreatment
Cited by: 98
Author(s): Karl M. Radtke, Maggie Schauer, Helen M. Gunter, Martina Ruf-Leuschner, Johanna Sill, Axel Meyer, Thomas Elbert
Software Mentions: 1
Published: over 9 years ago
10.1038/s41398-017-0088-0
Whole-exome sequencing and gene-based rare variant association tests suggest that PLA2G4E might be a risk gene for panic disorder
Cited by: 15
Author(s): Yoshiro Morimoto, Mihoko Shimada-Sugimoto, Takeshi Otowa, Shintaro Yoshida, Akira Kinoshita, Hiroyuki Mishima, Naohiro Yamaguchi, T. Mori, Akira Imamura, Hiroki Ozawa, Naohiro Kurotaki, Christiane Ziegler, Katharina Domschke, Jürgen Deckert, Tadashi Umekage, Mamoru Tochigi, Hisanobu Kaiya, Yuji Okazaki, Katsushi Tokunaga, Tsukasa Sasaki, Koh-ichiro Yoshiura, Shinji Ono
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41398-019-0509-3
Glucocorticoid-induced leucine zipper “quantifies” stressors and increases male susceptibility to PTSD
Cited by: 22
Author(s): Maya Lebow, M. Schroêder, Michael Tsoory, Dorin Holzman-Karniel, Divya Mehta, Shifra Ben‐Dor, Shosh Gil, Bekh Bradley, Alicia K. Smith, Tanja Jovanović, Kerry J. Ressler, Elisabeth B. Binder, Alon Chen
Software Mentions: 1
Published: over 5 years ago
10.1038/s41398-020-00888-1
Identification of a novel polymorphism associated with reduced clozapine concentration in schizophrenia patients—a genome-wide association study adjusting for smoking habits
Cited by: 27
Author(s): Robert L. Smith, Kevin O’Connell, Lavinia Athanasiu, Srdjan Djurovic, Marianne Kristiansen Kringen, Ole A. Andreassen, Espen Molden
Software Mentions: 1
Published: over 4 years ago
10.1038/s41398-021-01252-7
RNA editing of the 5-HT2C receptor in the central nucleus of the amygdala is involved in resilience behavior
Cited by: 4
Author(s): Gal Warhaftig, Chaya Mushka Sokolik, Khen Khermesh, Yehuda Lichtenstein, Michal Barák, Tzofnat Bareli, Erez Y. Levanon, Gal Yadid
Software Mentions: 1
Published: over 3 years ago
10.1128/mBio.02288-16
Differential Binding of Mitochondrial Transcripts by MRB8170 and MRB4160 Regulates Distinct Editing Fates of Mitochondrial mRNA in Trypanosomes
Cited by: 16
Author(s): Sameer Dixit, Michaela Müller-McNicoll, Vojtěch David, Kathi Zarnack, Jernej Ule, Hassan Hashimi, Julius Lukeš
Software Mentions: 1
Published: over 7 years ago
10.1128/mBio.00485-20
<i>Tombusvirus</i> p19 Captures RNase III-Cleaved Double-Stranded RNAs Formed by Overlapping Sense and Antisense Transcripts in Escherichia coli
Cited by: 5
Author(s): Linfeng Huang, Padraig Deighan, Jingmin Jin, Yingxue Li, Hung-Chi Cheung, Elaine Lee, Shirley S. Mo, Heather Hoover, Sahar Abubucker, Nancy Finkel, Larry A. McReynolds, Ann Hochschild, Judy Lieberman
Software Mentions: 1
Published: over 4 years ago
10.1186/gb-2006-7-s1-s12
Cited by: 507
Author(s): Danielle Thierry-Mieg, Jean Thierry‐Mieg
Software Mentions: 1
Published: almost 19 years ago
10.1186/s13059-020-02017-z
ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data
Cited by: 91
Author(s): Egor Dolzhenko, Mark F Bennett, Phillip A. Richmond, Brett Trost, Sai Chen, Joke J.F.A. van Vugt, Charlotte Nguyen, Giuseppe Narzisi, Vladimir G. Gainullin, Andrew M. Gross, Bryan R. Lajoie, Ryan J. Taft, Wyeth W. Wasserman, Stephen W. Scherer, Jan H. Veldink, David Bentley, Ryan K. C. Yuen, Melanie Bahlo, Michael A. Eberle
Software Mentions: 1
Published: over 4 years ago
10.4061/2011/976398
Application of Microarray-Based Comparative Genomic Hybridization in Prenatal and Postnatal Settings: Three Case Reports
Cited by: 5
Author(s): Jing Liu, François Bernier, Julie Lauzon, R. Brian Lowry, Judy Chernos
Software Mentions: 1
Published: over 13 years ago
10.1590/1678-4685-GMB-2018-0173
Integrated analysis of the critical region 5p15.3–p15.2 associated with cri-du-chat syndrome
Cited by: 13
Author(s): Thiago Corrêa, Bruno César Feltes, Mariluce Riegel
Software Mentions: 1
Published: almost 6 years ago
10.1002/dvg.22008
From expression cloning to gene modeling: The development of<i>Xenopus</i>gene sequence resources
Cited by: 19
Author(s): Michael J. Gilchrist
Software Mentions: 1
Published: almost 13 years ago
10.1186/s13059-020-02184-z
Deep sequencing reveals a DAP1 regulatory haplotype that potentiates autoimmunity in systemic lupus erythematosus
Cited by: 7
Author(s): Prithvi Raj, Ran Song, Honglin Zhu, Linley Riediger, Dong Jae Jun, Chao Liang, Carlos Arana, Bo Zhang, Yajing Gao, Benjamin Wakeland, Igor Dozmorov, Jianuan Zhou, Jennifer A. Kelly, Bernard Lauwerys, Joel M. Guthridge, Nancy J. Olsen, Swapan K. Nath, Chandrashekhar Pasare, Nicolai S. C. van Oers, Gary S. Gilkeson, Betty P. Tsao, Patrick M. Gaffney, Peter K. Gregersen, Judith A. James, Xiaoxia Zuo, David R. Karp, Quan Zhen Li, Edward K. Wakeland
Software Mentions: 1
Published: about 4 years ago
10.1002/gcc.21943
The miR‐17‐92 cluster and its target <i>THBS1</i> are differentially expressed in angiosarcomas dependent on <i>MYC</i> amplification
Cited by: 93
Author(s): Antoîne Italiano, Rachael Thomas, Matthew Breen, Lei Zhang, Aimeé M. Crago, Samuel Singer, Raya Khanin, Robert G. Maki, Aleksandra Mihailović, Markus Hafner, Tom Tuschl, Cristina R. Antonescu
Software Mentions: 1
Published: over 12 years ago
10.3390/genes12081140
Multiple Acyl-CoA Dehydrogenase Deficiency with Variable Presentation Due to a Homozygous Mutation in a Bedouin Tribe
Cited by: 1
Author(s): Orna Staretz‐Chacham, Shirly Amar, Shlomo Almashanu, Ben Pode‐Shakked, Ann Saada, Ohad Wormser, Eli Hershkovitz
Software Mentions: 1
Published: over 3 years ago
10.3390/genes12081111
Molecular Characterization of Choroideremia-Associated Deletions Reveals an Unexpected Regulation of CHM Gene Transcription
Cited by: 2
Author(s): Tiziana Fioretti, Valentina Di Iorio, Barbara Lombardo, Francesca De Falco, Armando Cevenini, Fabio Cattaneo, Francesco Testa, Lucio Pastore, Francesca Simonelli, Gabriella Esposito
Software Mentions: 1
Published: over 3 years ago
10.3390/genes12081284
Development and Evaluation of the Ancestry Informative Marker Panel of the VISAGE Basic Tool
Cited by: 18
Author(s): M. de la Puente, Jorge Ruiz-Ramírez, A. Ambroa-Conde, Catarina Xavier, Jacobo Pardo‐Seco, José Antonio Álvarez‐Dios, Ana Freire-Aradas, Ana Mosquera-Miguel, T.E. Gross, Elaine Y.Y. Cheung, Wojciech Branicki, Michael Nothnagel, Walther Parson, Peter M. Schneider, Manfred Kayser, Ángel Carracedo, Marı́a Victoria Lareu, Christopher Phillips
Software Mentions: 1
Published: over 3 years ago
10.1093/gbe/evu139
The Draft Assembly of the Radically Organized Stylonychia lemnae Macronuclear Genome
Cited by: 54
Author(s): Samuel H. Aeschlimann, Franziska Jönsson, Jan Postberg, Nicholas A. Stover, Robert L. Petera, Hans-Joachim Lipps, Mariusz Nowacki, Estienne C. Swart
Software Mentions: 1
Published: over 10 years ago
10.1038/cddis.2017.241
Mitochondrial AKAP1 supports mTOR pathway and tumor growth
Cited by: 40
Author(s): Laura Rinaldi, Maria Sepe, Rossella Delle Donne, Kristel Conte, Antonietta Arcella, Domenica Borzacchiello, Stefano Amente, Fernanda De Vita, Monia Porpora, Corrado Garbi, Maria Antonietta Oliva, Claudio Procaccini, Deriggio Faicchia, Giuseppe Matarese, Federica Zito Marino, Gaetano Rocco, Sara Pignatiello, Renato Franco, Luigi Insabato, Barbara Majello, Antonio Feliciello
Software Mentions: 1
Published: over 7 years ago
10.1093/gbe/evv012
The Role of DNA Insertions in Phenotypic Differentiation between Humans and Other Primates
Cited by: 4
Author(s): Elizabeth Hellen, Andrew D. Kern
Software Mentions: 1
Published: almost 10 years ago
10.1093/gbe/evv142
A Genome-Wide Landscape of Retrocopies in Primate Genomes
Cited by: 44
Author(s): Fábio C. P. Navarro, Pedro A. F. Galante
Software Mentions: 1
Published: over 9 years ago
10.1093/gbe/evv161
Comparative Genomics of Environmental and Clinical<i>Stenotrophomonas maltophilia</i>Strains with Different Antibiotic Resistance Profiles
Cited by: 72
Author(s): Benjamin Youenou, Sabine Favre-Bonté, Josselin Bodilis, Elisabeth Brothier, Audrey Dubost, Daniel Müller, Sylvie Nazaret
Software Mentions: 1
Published: over 9 years ago
10.1093/gbe/evx237
The Diversity of REcent and Ancient huMan (DREAM): A New Microarray for Genetic Anthropology and Genealogy, Forensics, and Personalized Medicine
Cited by: 9
Author(s): Eran Elhaik, Leeban Yusuf, Ainan I J Anderson, Mehdi Pirooznia, Dimitrios Arnellos, Gregory Vilshansky, Gunes Ercal, Yontao Lu, Teresa A. Webster, Michael L. Baird, Umberto Esposito
Software Mentions: 1
Published: about 7 years ago
10.1186/1866-1955-6-17
A CTNNA3 compound heterozygous deletion implicates a role for αT-catenin in susceptibility to autism spectrum disorder
Cited by: 37
Author(s): Elena Bacchelli, Fabiola Ceroni, Dalila Pinto, Silvia Lomartire, Maila Giannandrea, Patrizia D’Adamo, Elena Bonora, Piero Parchi, Raffaella Tancredi, Agatino Battaglia, Elena Maestrini
Software Mentions: 1
Published: over 10 years ago
10.1093/gbe/evy199
Turning Vice into Virtue: Using Batch-Effects to Detect Errors in Large Genomic Data Sets
Cited by: 7
Author(s): Fabrizio Mafessoni, Rashmi B. Prasad, Leif Groop, Ola Hansson, Kay Prüfer
Software Mentions: 1
Published: about 6 years ago
10.1093/gbe/evz228
A Nearly Complete Genome of Ciona intestinalis Type A (C. robusta) Reveals the Contribution of Inversion to Chromosomal Evolution in the Genus Ciona
Cited by: 69
Author(s): Yutaka Satou, Ryohei Nakamura, Dejie Yu, Reiko Yoshida, Mayuko Hamada, Manabu Fujie, Kanako Hisata, Hiroyuki Takeda, Noriyuki Satoh
Software Mentions: 1
Published: about 5 years ago
10.1093/gbe/evz254
Genome Assembly of the Dogface Butterfly Zerene cesonia
Cited by: 7
Author(s): Luis Rodriguez-Caro, Jennifer Fenner, Caleb Benson, Steven M. Van Belleghem, Brian A. Counterman
Software Mentions: 1
Published: almost 5 years ago
10.1093/gbe/evaa045
Weak Correlation between Nucleotide Variation and Recombination Rate across the House Mouse Genome
Cited by: 9
Author(s): Michael Emmett Kartje, Peicheng Jing, Bret A. Payseur
Software Mentions: 1
Published: over 4 years ago
10.3390/genes12060822
Novel Structural Variation and Evolutionary Characteristics of Chloroplast tRNA in Gossypium Plants
Cited by: 6
Author(s): Tingting Zhang, Yang Yang, Xiaoyu Song, Xinyu Gao, Xianliang Zhang, Junjie Zhao, Kehai Zhou, Chun-Chao Zhao, Wei Li, Daigang Yang, Xiongfeng Ma, Zhong-Hu Li
Software Mentions: 1
Published: over 3 years ago
10.1038/s41419-021-03763-z
RNA m6A reader YTHDF2 facilitates lung adenocarcinoma cell proliferation and metastasis by targeting the AXIN1/Wnt/β-catenin signaling
Cited by: 50
Author(s): Yin Li, Hao Sheng, Feng Ma, Qiang Wu, Jianfang Huang, Qiang Chen, Lianghe Sheng, Xinghai Zhu, Xianfang Zhu, Meng Xu
Software Mentions: 1
Published: over 3 years ago
10.1186/2041-9414-2-6
Assessment of genome integrity with array CGH in cattle transgenic cell lines produced by homologous recombination and somatic cell cloning
Cited by: 7
Author(s): George E. Liu, Yali Hou, James M. Robl, Yoshimi Kuroiwa, Zhongde Wang
Software Mentions: 1
Published: almost 14 years ago
10.1186/gm137
Collaboratively charting the gene-to-phenotype network of human congenital heart defects
Cited by: 28
Author(s): Roland Barriot, Jeroen Breckpot, Bernard Thienpont, Sylvain Brohée, Steven Van Vooren, Bert Coessens, Léon-Charles Tranchevent, Peter Van Loo, Marc Gewillig, Koenraad Devriendt, Yves Moreau
Software Mentions: 1
Published: almost 15 years ago
10.1038/s41419-021-03411-6
HOXB4 inhibits the proliferation and tumorigenesis of cervical cancer cells by downregulating the activity of Wnt/β-catenin signaling pathway
Cited by: 14
Author(s): Dan Lei, Wenting Yang, Pan Zheng
Software Mentions: 1
Published: almost 4 years ago
10.3390/genes12060805
Generation and Genetic Correction of USH2A c.2299delG Mutation in Patient-Derived Induced Pluripotent Stem Cells
Cited by: 13
Author(s): Xuezhong Liu, Justin Lillywhite, Wenliang Zhu, Zaohua Huang, Andrew E. Clark, Nicholas C. Gosstola, Colin T. Maguire, Derek M. Dykxhoorn, Zheng-Yi Chen, Jun Yang
Software Mentions: 1
Published: over 3 years ago
10.3390/genes12060877
Cytogenetic and Array-CGH Characterization of a Simple Case of Reciprocal t(3;10) Translocation Reveals a Hidden Deletion at 5q12
Cited by: 0
Author(s): Angelo Cellamare, Nicoletta Coccaro, Maria Cristina Nuzzi, Paola Casieri, Marilina Tampoia, Flavia Angela Maria Maggiolini, Mattia Gentile, Romina Ficarella, Emanuela Ponzi, Maria Rosa Conserva, Laura Cardarelli, Annunziata Panarese, Francesca Antonacci, Antonia Gesario
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms20143533
Smith-Magenis Syndrome: Molecular Basis of a Genetic-Driven Melatonin Circadian Secretion Disorder
Cited by: 8
Author(s): Alice Poisson, Alain Nicolas, Idriss Bousquet, Véronique Raverot, Claude Gronfier, Caroline Demily
Software Mentions: 1
Published: over 5 years ago
10.1186/s13073-017-0427-z
PathOS: a decision support system for reporting high throughput sequencing of cancers in clinical diagnostic laboratories
Cited by: 24
Author(s): Kenneth D. Doig, Andrew Fellowes, Anthony Bell, Andrei Seleznev, Dávid Ma, Jason Ellul, Jason Li, Maria A. Doyle, Ella R. Thompson, Amit Kumar, Luis F. Lara, Ravikiran Vedururu, Gareth Reid, Thomas Conway, Anthony T. Papenfuss, Stephen B. Fox
Software Mentions: 1
Published: over 7 years ago
10.1186/s13073-017-0453-x
Identification and characterization of a FOXA2-regulated transcriptional enhancer at a type 2 diabetes intronic locus that controls GCKR expression in liver cells
Cited by: 20
Author(s): Maykel López Rodríguez, Dorota Kaminska, Kati Lappalainen, Jussi Pihlajamäki, Minna U. Kaikkonen, Markku Laakso
Software Mentions: 1
Published: over 7 years ago
10.3390/genes12050669
Investigating Olfactory Gene Variation and Odour Identification in Older Adults
Cited by: 4
Author(s): Siddharth Raj, Anbupalam Thalamuthu, Nicola J. Armstrong, Margaret J. Wright, John B. Kwok, Julian N. Trollor, David Ames, Peter R. Schofield, Henry Brodaty, Perminder S. Sachdev, Karen A. Mather
Software Mentions: 1
Published: over 3 years ago
10.1038/cddis.2016.319
Transactivation of TrkB by Sigma-1 receptor mediates cocaine-induced changes in dendritic spine density and morphology in hippocampal and cortical neurons
Cited by: 29
Author(s): Minhan Ka, Yeon Hee Kook, Ke Liao, Shilpa Buch, Woo Yang Kim
Software Mentions: 1
Published: about 8 years ago
10.1016/j.ygeno.2009.10.004
Genome-wide end-sequenced BAC resources for the NOD/MrkTac☆ and NOD/ShiLtJ☆☆ mouse genomes
Cited by: 15
Author(s): Charles A. Steward, Sean Humphray, Bob Plumb, Matthew C. Jones, Michael A. Quail, Stephen V. Rice, Tony Cox, Robert M. Davies, James K. Bonfield, Thomas M. Keane, Michael Nefedov, Pieter J. de Jong, Paul Lyons, Linda S. Wicker, John A. Todd, Yoshihide Hayashizaki, Omid M. Gulban, Jayne S. Danska, Jennifer Harrow, Tim Hubbard, Jane Rogers, David J. Adams
Software Mentions: 1
Published: almost 15 years ago
10.1016/j.gpb.2019.03.006
Tung Tree (Vernicia fordii) Genome Provides A Resource for Understanding Genome Evolution and Improved Oil Production
Cited by: 34
Author(s): Lin Zhang, Meilan Liu, Hongxu Long, Wei Dong, Asher Pasha, Eddi Esteban, Wenying Li, Xiaoming Yang, Ze Li, Aixia Song, Duo Ran, Guang Zhao, Yanwei Zeng, Hao Chen, Ming Zou, Jingjing Li, Fan Liang, Meili Xie, Jiang Hu, Depeng Wang, Heping Cao, Nicholas J. Provart, Liangsheng Zhang
Software Mentions: 1
Published: almost 5 years ago
10.1186/2047-217X-3-13
Annotated features of domestic cat – Felis catus genome
Cited by: 30
Author(s): Gaik Tamazian, Serguei Simonov, Pavel Dobrynin, Alex Makunin, Anton Logachev, Aleksey Komissarov, Andrey Shevchenko, Vladimir Brukhin, Nikolay Cherkasov, Anton Svitin, Klaus‐Peter Koepfli, Joan Pontius, Carlos A. Driscoll, Kevin Blackistone, Cristina Barr, David Goldman, Agostinho Antunes, Javier Quilez, Belén Lorente-Galdós, Can Alkan, Tomàs Marquès‐Bonet, Marylin Menotti-Raymond, Victor A. David, Kristina Narfström, Stephen J. O’Brien
Software Mentions: 1
Published: over 10 years ago
10.1093/gigascience/gix085
De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads
Cited by: 150
Author(s): Jonas Korlach, Gregory Gedman, Sarah B. Kingan, Chen-Shan Chin, Jason T. Howard, Josée Audet, Lindsey J. Cantin, Erich D. Jarvis
Software Mentions: 1
Published: about 7 years ago
10.3390/genes12040470
Emerging Role of ODC1 in Neurodevelopmental Disorders and Brain Development
Cited by: 13
Author(s): Jeremy W. Prokop, Caleb Bupp, Austin Frisch, Stephanie M. Bilinovich, Daniel B. Campbell, Daniel Vogt, Chad R. Schultz, Katie Uhl, Elizabeth VanSickle, Surender Rajasekaran, André S. Bachmann
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms21020502
Engineering of Effector Domains for Targeted DNA Methylation with Reduced Off-Target Effects
Cited by: 29
Author(s): Daniel Hofacker, Julian Broche, Laura Laistner, Sabrina Adam, Pavel Bashtrykov, Albert Jeltsch
Software Mentions: 1
Published: almost 5 years ago
10.3390/genes12030430
Hunting for Familial Parkinson’s Disease Mutations in the Post Genome Era
Cited by: 2
Author(s): Steven Bentley, Ilaria Guella, Holly E. Sherman, Hannah M. Neuendorf, Alex M. Sykes, Javed Fowdar, Peter A. Silburn, Stephen A. Wood, Matthew J. Farrer, George D. Mellick
Software Mentions: 1
Published: over 3 years ago
10.3390/genes12020238
Evolution of the IRF Family in Salmonids
Cited by: 7
Author(s): Thomas C. Clark, Pierre Boudinot, Bertrand Collet
Software Mentions: 1
Published: almost 4 years ago
10.7554/eLife.01236
Global cellular response to chemotherapy-induced apoptosis
Cited by: 60
Author(s): Arun P. Wiita, Etay Ziv, Paul J. Wiita, Anatoly Urisman, Olivier Julien, Alma L. Burlingame, Jonathan S. Weissman, James A. Wells
Software Mentions: 1
Published: about 11 years ago
10.1038/s41418-019-0288-7
MALAT1-KTN1-EGFR regulatory axis promotes the development of cutaneous squamous cell carcinoma
Cited by: 38
Author(s): Ying Zhang, Lin Gao, Shudong Ma, Ji Ma, Yinghui Wang, Shanshan Li, Xia Hu, Shuo Han, Meijuan Zhou, Liang Zhou, Zhenhua Ding
Software Mentions: 1
Published: almost 6 years ago
10.2196/jmir.3.3.e25
Journal of Medical Internet Research is now indexed in Medline
Cited by: 4
Author(s): Günther Eysenbach
Software Mentions: 1
Published: about 23 years ago
10.3390/genes12020141
Characterization of Copy-Number Variations and Possible Candidate Genes in Recurrent Pregnancy Losses
Cited by: 13
Author(s): Yan‐Ran Sheng, Shunyu Hou, Wenting Hu, Chunyan Wei, Yukai Liu, Yuyin Liu, Lu Jiang, Jingjing Xiang, Xiaoxi Sun, Lei Chen, Huiling Wang, Xiao‐Yong Zhu
Software Mentions: 1
Published: almost 4 years ago
10.7554/eLife.44558
Decoys provide a scalable platform for the identification of plant E3 ubiquitin ligases that regulate circadian function
Cited by: 23
Author(s): Ann Feke, Wei Liu, Jing Han Hong, Man-Wah Li, Chin-Mei Lee, Elton Zhou, Joshua M. Gendron
Software Mentions: 1
Published: over 5 years ago
10.1093/database/bau108
The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud
Cited by: 4
Author(s): Kamran Karimi, Peter D. Vize
Software Mentions: 1
Published: about 10 years ago
10.1093/database/baw144
On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase
Cited by: 24
Author(s): Hans Ienasescu, Kang Li, Robin Andersson, Morana Vitezic, Sarah Rennie, Yun Chen, Kristoffer Vitting-Seerup, Emil Lagoni, Mette Boyd, Jette Bornholdt, Michiel de Hoon, Hideya Kawaji, Timo Lassmann, Yoshihide Hayashizaki, Alistair R.R. Forrest, Piero Carninci, Albin Sandelin
Software Mentions: 1
Published: almost 9 years ago
10.1093/database/baz016
Increased interactivity and improvements to theGigaSciencedatabase, GigaDB
Cited by: 9
Author(s): Sizhe Xiao, Chris Armit, Scott Edmunds, Laurie Goodman, Peter Li, Mary Ann Tuli, Christopher I. Hunter
Software Mentions: 1
Published: almost 6 years ago