pypi: browser | Projects | Ecosyste.ms: Papers

10.1038/s41598-021-82557-x

GATA4 blocks squamous epithelial cell gene expression in human esophageal squamous cells
Cited by: 5
Author(s): Roman Stavniichuk, Ann DeLaForest, Cayla A. Thompson, James J. Miller, Rhonda F. Souza, Michele A. Battle
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-84491-4

Polymorphic variants in Sweet and Umami taste receptor genes and birthweight
Cited by: 4
Author(s): Riccardo Farinella, Ilaria Erbi, Alice Bedini, Sara Donato, Manuel Gentiluomo, Claudia Angelucci, Antonella Lupetti, Armando Cuttano, Francesca Moscuzza, Cristina Tuoni, Cosmeri Rizzato, Massimiliano Ciantelli, Daniele Campa
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-95936-1

The ABCC4 gene is associated with pyometra in golden retriever dogs
Cited by: 3
Author(s): Maja L. Arendt, Aime Ambrosen, Tove Fall, Marcin Kierczak, Katarina Tengvall, Jennifer R. S. Meadows, Åsa Karlsson, Anne-Sofie Lagerstedt, Tomas F. Bergström, Gerhard Andersson, Kerstin Lindblad‐Toh, Ragnvi Hagman
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-96626-8

A comparative recombination analysis of human coronaviruses and implications for the SARS-CoV-2 pandemic
Cited by: 41
Author(s): Simon Pollett, Matthew A. Conte, Mark A Sanborn, Richard G. Jarman, Grace M. Lidl, Kayvon Modjarrad, Irina Maljkovic Berry
Software Mentions: 1
Published: about 5 years ago

10.1155/2016/3675283

KCl-Dependent Release of Mitochondrial Membrane-Bound Arginase Appears to Be a Novel Variant of Arginase-II
Cited by: 1
Author(s): Sunita Mishra, Mishra Rajnikant
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41392-021-00620-5

EpiMap: Fine-tuning integrative epigenomics maps to understand complex human regulatory genomic circuitry
Cited by: 6
Author(s): Dave S. B. Hoon, Negin Rahimzadeh, Matías A. Bustos
Software Mentions: 1
Published: over 5 years ago

10.1186/s13395-019-0218-x

Development of a high-throughput screen to identify small molecule enhancers of sarcospan for the treatment of Duchenne muscular dystrophy
Cited by: 6
Author(s): Cynthia Shu, Ariana N. Kaxon-Rupp, Judd R. Collado, Robert Damoiseaux, Rachelle H. Crosbie
Software Mentions: 1
Published: almost 7 years ago

10.1186/s40064-016-2950-6

Japanese traditional dietary fungus koji Aspergillus oryzae functions as a prebiotic for Blautia coccoides through glycosylceramide: Japanese dietary fungus koji is a new prebiotic
Cited by: 37
Author(s): Hiroshi Hamajima, Haruka Matsunaga, Ayami Fujikawa, Tomoya Sato, Susumu Mitsutake, Teruyoshi Yanagita, Koji Nagao, Jiro Nakayama, Hiroshi Kitagaki
Software Mentions: 1
Published: over 10 years ago

10.1016/j.stemcr.2018.03.006

PLAG1 and USF2 Co-regulate Expression of Musashi-2 in Human Hematopoietic Stem and Progenitor Cells
Cited by: 21
Author(s): Muluken Belew, Sonam Bhatia, Ava Keyvani Chahi, Stefan Rentas, Jonathan S. Draper, Kristin J. Hope
Software Mentions: 1
Published: over 8 years ago

10.1016/j.stemcr.2020.07.007

Two Functional Axes of Feedback-Enforced PRC2 Recruitment in Mouse Embryonic Stem Cells
Cited by: 16
Author(s): Matteo Perino, Guido van Mierlo, Chet Hong Loh, Sandra M.T. Wardle, Dick W. Zijlmans, Hendrik Marks, Gert Jan C. Veenstra
Software Mentions: 1
Published: almost 6 years ago

10.1155/2013/473416

Emerging Molecular Targets for Brain Repair after Stroke
Cited by: 9
Author(s): Jerzy Krupiński, Mark Slevin
Software Mentions: 1
Published: almost 14 years ago

10.3390/toxins4090729

Interaction between Shiga Toxin and Monoclonal Antibodies: Binding Characteristics and in Vitro Neutralizing Abilities
Cited by: 31
Author(s): Letícia B. Rocha, Daniela Luz, Cláudia Trigo Pedroso de Moraes, Andressa Caravelli, Ivan Filipe de Almeida Lopes Fernandes, Beatriz E. C. Guth, Denise S. P. Q. Horton, Roxane Maria Fontes Piazza
Software Mentions: 1
Published: about 14 years ago

10.1038/tp.2015.63

Epigenetic modifications of the glucocorticoid receptor gene are associated with the vulnerability to psychopathology in childhood maltreatment
Cited by: 98
Author(s): Karl M. Radtke, Maggie Schauer, Helen M. Gunter, Martina Ruf-Leuschner, Johanna Sill, Axel Meyer, Thomas Elbert
Software Mentions: 1
Published: over 11 years ago

10.1038/s41398-017-0088-0

Whole-exome sequencing and gene-based rare variant association tests suggest that PLA2G4E might be a risk gene for panic disorder
Cited by: 15
Author(s): Yoshiro Morimoto, Mihoko Shimada-Sugimoto, Takeshi Otowa, Shintaro Yoshida, Akira Kinoshita, Hiroyuki Mishima, Naohiro Yamaguchi, T. Mori, Akira Imamura, Hiroki Ozawa, Naohiro Kurotaki, Christiane Ziegler, Katharina Domschke, Jürgen Deckert, Tadashi Umekage, Mamoru Tochigi, Hisanobu Kaiya, Yuji Okazaki, Katsushi Tokunaga, Tsukasa Sasaki, Koh-ichiro Yoshiura, Shinji Ono
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41398-019-0509-3

Glucocorticoid-induced leucine zipper “quantifies” stressors and increases male susceptibility to PTSD
Cited by: 22
Author(s): Maya Lebow, M. Schroêder, Michael Tsoory, Dorin Holzman-Karniel, Divya Mehta, Shifra Ben‐Dor, Shosh Gil, Bekh Bradley, Alicia K. Smith, Tanja Jovanović, Kerry J. Ressler, Elisabeth B. Binder, Alon Chen
Software Mentions: 1
Published: over 7 years ago

10.1038/s41398-020-00888-1

Identification of a novel polymorphism associated with reduced clozapine concentration in schizophrenia patients—a genome-wide association study adjusting for smoking habits
Cited by: 27
Author(s): Robert L. Smith, Kevin O’Connell, Lavinia Athanasiu, Srdjan Djurovic, Marianne Kristiansen Kringen, Ole A. Andreassen, Espen Molden
Software Mentions: 1
Published: over 6 years ago

10.1038/s41398-021-01252-7

RNA editing of the 5-HT2C receptor in the central nucleus of the amygdala is involved in resilience behavior
Cited by: 4
Author(s): Gal Warhaftig, Chaya Mushka Sokolik, Khen Khermesh, Yehuda Lichtenstein, Michal Barák, Tzofnat Bareli, Erez Y. Levanon, Gal Yadid
Software Mentions: 1
Published: over 5 years ago

10.1128/mBio.02288-16

Differential Binding of Mitochondrial Transcripts by MRB8170 and MRB4160 Regulates Distinct Editing Fates of Mitochondrial mRNA in Trypanosomes
Cited by: 16
Author(s): Sameer Dixit, Michaela Müller-McNicoll, Vojtěch David, Kathi Zarnack, Jernej Ule, Hassan Hashimi, Julius Lukeš
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.00485-20

<i>Tombusvirus</i> p19 Captures RNase III-Cleaved Double-Stranded RNAs Formed by Overlapping Sense and Antisense Transcripts in Escherichia coli
Cited by: 5
Author(s): Linfeng Huang, Padraig Deighan, Jingmin Jin, Yingxue Li, Hung-Chi Cheung, Elaine Lee, Shirley S. Mo, Heather Hoover, Sahar Abubucker, Nancy Finkel, Larry A. McReynolds, Ann Hochschild, Judy Lieberman
Software Mentions: 1
Published: over 6 years ago

10.1128/mSphere.00014-15

The Human Adenovirus Type 5 E4orf6/E1B55K E3 Ubiquitin Ligase Complex Can Mimic E1A Effects on E2F
Cited by: 6
Author(s): Frédéric Dallaire, Sabrina Schreiner, G. Eric Blair, Thomas Dobner, Philip E. Branton, Paola Blanchette
Software Mentions: 1
Published: over 10 years ago

10.1007/s00439-021-02289-w

Whole-genome sequencing identifies functional noncoding variation in SEMA3C that cosegregates with dyslexia in a multigenerational family
Cited by: 5
Author(s): Amaia Carrión-Castillo, Sara Busquets Estruch, Ben Maassen, Barbara Franke, Clyde Francks, Simon E. Fisher
Software Mentions: 1
Published: over 5 years ago

10.1007/s00439-015-1616-8

Genetic variation in the immunosuppression pathway genes and breast cancer susceptibility: a pooled analysis of 42,510 cases and 40,577 controls from the Breast Cancer Association Consortium
Cited by: 7
Author(s): Jieping Lei, Anja Rudolph, Kirsten B. Moysich, Sabine Behrens, Ellen L. Goode, Manjeet K. Bolla, Joe Dennis, Alison M. Dunning, Douglas F. Easton, Qin Wang, Javier Benı́tez, John L. Hopper, Melissa C. Southey, Marjanka K. Schmidt, Annegien Broeks, Peter A. Fasching, Lothar Haeberle, Julian Peto, Isabel dos‐Santos‐Silva, Elinor J. Sawyer, Ian Tomlinson, Barbara Burwinkel, Frederik Marmé, Pascal Guénel, Thérèse Truong, Stig E. Bojesen, Henrik Flyger, Sune F. Nielsen, Børge G. Nordestgaard, Anna González‐Neira, Primitiva Menéndez, Hoda Anton‐Culver, Susan L. Neuhausen, Hermann Brenner, Volker Arndt, Alfons Meindl, Rita K. Schmutzler, Hiltrud Brauch, Ute Hamann, Heli Nevanlinna, Rainer Fagerholm, Thilo Dörk, Natalia Bogdanova, Arto Mannermaa, Jaana M. Hartikainen, kConFab Investigators, Laurien Van Dijck, Ann Smeets, Dieter Flesch-Janys, Ursula Eilber, Paolo Radice, Paolo Peterlongo, Fergus J. Couch, Emily Hallberg, Graham G. Giles, Roger L. Milne, Christopher A. Haiman, Fredrick Schumacher, Jacques Simard, Mark S. Goldberg, Vessela N. Kristensen, Anne‐Lise Børresen‐Dale, Zheng Wang, Alicia Beeghly–Fadiel, Robert Winqvist, Mervi Grip, Irene L. Andrulis, Gord Glendon, Montserrat García‐Closas, Jonine D. Figueroa, Kamila Czene, Judith S. Brand, Hatef Darabi, Mikael Eriksson, Per Hall, Jingmei Li, Angela Cox, Simon S. Cross, Paul D.P. Pharoah, Mitul Shah, Maria Kabisch, Diana Torres, Anna Jakubowska, Jan Lubiński, Foluso O. Ademuyiwa, Christine B. Ambrosone, Anthony Swerdlow, Michael E. Jones, Jenny Chang–Claude
Software Mentions: 1
Published: almost 11 years ago

10.1007/s00439-018-1965-1

De novo and inherited loss-of-function variants of ATP2B2 are associated with rapidly progressive hearing impairment
Cited by: 24
Author(s): Jeroen J. Smits, Jaap Oostrik, Andy J. Beynon, Sarina G. Kant, P. A. M. de Koning Gans, Liselotte J. C. Rotteveel, Jolien S. Klein Wassink-Ruiter, Rolien Free, Saskia M. Maas, Jiddeke van de Kamp, Paul Merkus, Wouter Koole, Ilse Feenstra, R.J.C. Admiraal, Cornelis P. Lanting, Margit Schraders, Helger G. Yntema, Ronald J.E. Pennings, Hannie Kremer
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00439-015-1602-1

Mutation in CEP63 co-segregating with developmental dyslexia in a Swedish family
Cited by: 20
Author(s): Elisabet Einarsdottir, Idor Svensson, Fahimeh Darki, Myriam Peyrard-Janvid, Jessica M. Lindvall, Adam Ameur, Christer Jacobsson, Torkel Klingberg, Juha Kere, Hans Matsson
Software Mentions: 1
Published: about 11 years ago

10.1186/s40246-021-00337-0

Regulatory VCAN polymorphism is associated with shoulder pain and disability in breast cancer survivors
Cited by: 3
Author(s): Trevor S. Mafu, Alison V. September, Delva Shamley
Software Mentions: 1
Published: over 5 years ago

10.1186/s40246-020-00258-4

TRPM3_miR-204: a complex locus for eye development and disease
Cited by: 24
Author(s): Alan Shiels
Software Mentions: 1
Published: over 6 years ago

10.1093/hmg/ddt647

Disruption of SATB2 or its long-range cis-regulation by SOX9 causes a syndromic form of Pierre Robin sequence
Cited by: 50
Author(s): Jacqueline K. Rainger, Shipra Bhatia, Hemant Bengani, Philippe Gautier, Joe Rainger, Matt Pearson, Morad Ansari, Jayne Crow, Felicity V. Mehendale, Božena Pálinkášová, Michael J. Dixon, Pamela J. Thompson, Mar Matarı́n, Sanjay M. Sisodiya, Dirk A. Kleinjan, David R. FitzPatrick
Software Mentions: 1
Published: almost 13 years ago

10.1093/hmg/ddz093

MRPS25 mutations impair mitochondrial translation and cause encephalomyopathy
Cited by: 32
Author(s): Enrico Bugiardini, Alice Mitchell, Ilaria Dalla Rosa, Hue-Tran Horning-Do, Alan M Pitmann, Olivia V. Poole, Janice L. Holton, Sachit Shah, Cathy E. Woodward, Iain P. Hargreaves, R. Quinlivan, Alexey Amunts, Rudolf J. Wiesner, Henry Houlden, Ian Holt, Michael G. Hanna, Robert D S Pitceathly, Antonella Spinazzola
Software Mentions: 1
Published: over 7 years ago

10.7150/ijbs.35520

Impact of chronically alternating light-dark cycles on circadian clock mediated expression of cancer (glioma)-related genes in the brain
Cited by: 13
Author(s): Suliman Khan, Yang Liu, Rabeea Siddique, Ghulam Nabi, Mengzhou Xue, Hongwei Hou
Software Mentions: 1
Published: almost 8 years ago

10.1186/1756-9966-27-19

Non-protein coding RNA biomarkers and differential expression in cancers: a review
Cited by: 55
Author(s): Massimo Mallardo, Palmiro Poltronieri, Oscar Fernando D’Urso
Software Mentions: 1
Published: over 18 years ago

10.1186/s13046-017-0646-6

FOXA1 inhibits hepatocellular carcinoma progression by suppressing PIK3R1 expression in male patients
Cited by: 35
Author(s): Shujiao He, Junyi Zhang, Wan Zhang, Fengsheng Chen, Rong Luo
Software Mentions: 1
Published: almost 9 years ago

10.1084/jem.20180992

Endothelial <i>Cdk5</i> deficit leads to the development of spontaneous epilepsy through CXCL1/CXCR2-mediated reactive astrogliosis
Cited by: 35
Author(s): Xiuxiu Liu, Lin Yang, Ling-Xiao Shao, Yang He, Gang Wu, Yu-huan Bao, Nannan Lu, De Gong, LU Ya-ping, Tiantian Cui, Ninghe Sun, Danyang Chen, Wei‐Xing Shi, Kohji Fukunaga, Hongshan Chen, Zhong Chen, Feng Han, Yuanqing Lu
Software Mentions: 1
Published: about 7 years ago

10.1002/jev2.12053

Mesenchymal Stem Cell exosome delivered Zinc Finger Protein activation of cystic fibrosis transmembrane conductance regulator
Cited by: 22
Author(s): Olga Villamizar, Shafagh A. Waters, Tristan Scott, Nicole Grepo, Adam Jaffé, Kevin V. Morris
Software Mentions: 1
Published: almost 6 years ago

10.1186/s43141-020-0021-4

In silico analysis of a novel causative mutation in Cadherin23 gene identified in an Omani family with hearing loss
Cited by: 3
Author(s): Mohammed Nasser Al-Kindi, Mazin Jawad Al-Khabouri, Khalsa Ahmad Al-Lamki, Flavia Palombo, Tommaso Pippucci, Giovanni Romeo, Nadia Al-Wardy
Software Mentions: 1
Published: over 6 years ago

10.1186/s43141-021-00117-2

Molecular characterization of coat color gene in Sahiwal versus Karan Fries bovine
Cited by: 4
Author(s): Talla Sridhar Goud, R. C. Upadhyay, Vijaya Bhaskar Reddy Pichili, Suneel Kumar Onteru, Kiranmai Chadipiralla
Software Mentions: 1
Published: almost 6 years ago

10.1155/2017/9769171

Tissue- and Cell Type-Specific Expression of the Long Noncoding RNA Klhl14-AS in Mouse
Cited by: 8
Author(s): Sara Carmela Credendino, Nicole Lewin, Mauro Dal Secco de Oliveira, Swaraj Basu, Barbara D’Andrea, Elena Amendola, Luigi Guida, Antonio Nardone, Remo Sanges, Mario De Felice, Gabriella De Vita
Software Mentions: 1
Published: almost 10 years ago

10.1186/1687-9856-2012-8

Molecular diagnostic testing for Klinefelter syndrome and other male sex chromosome aneuploidies
Cited by: 4
Author(s): Karl Hager, Kori Jennings, Seiyu Hosono, Susan Howell, Jeffrey R. Gruen, Scott A. Rivkees, Nicole Tartaglia, Henry M. Rinder
Software Mentions: 1
Published: over 14 years ago

10.1167/iovs.61.10.22

Recurrent Rare Copy Number Variants Increase Risk for Esotropia
Cited by: 6
Author(s): Mary C. Whitman, Silvio Alessandro Di Gioia, Wai‐Man Chan, Alon Gelber, Brandon M Pratt, Jéssica Bell, Thomas E Collins, James A. Knowles, Christopher Armoskus, Michele T. Pato, Carlos N. Pato, Sherin Shaaban, Sandra E Staffieri, Sarah MacKinnon, Gail Maconachie, James E Elder, Elias I. Traboulsi, Irène Gottlob, David A. Mackey, David G. Hunter, Elizabeth C. Engle
Software Mentions: 1
Published: over 6 years ago

10.2196/mental.8597

Efficacy and Moderation of Mobile App–Based Programs for Mindfulness-Based Training, Self-Compassion Training, and Cognitive Behavioral Psychoeducation on Mental Health: Randomized Controlled Noninferiority Trial
Cited by: 79
Author(s): Winnie W. S. Mak, Alan C.Y. Tong, Sindy Y. C. Yip, Wacy W. S. Lui, Floria H. N. Chio, Amy Ty Chan, Clifford Wong
Software Mentions: 1
Published: about 8 years ago

10.3390/ijerph14040345

Genomic Evidence for Bacterial Determinants Influencing Obesity Development
Cited by: 16
Author(s): Raphael D. Isokpehi, Shaneka S. Simmons, Matilda Johnson, Marinelle Payton
Software Mentions: 1
Published: over 9 years ago

10.1038/onc.2014.421

FOXA1 repression is associated with loss of BRCA1 and increased promoter methylation and chromatin silencing in breast cancer
Cited by: 31
Author(s): Chun Gong, Keiji Fujino, Lara J. Monteiro, Ana Gomes, Rinske Drost, Hazel Davidson‐Smith, Satoru Takeda, Ui‐Soon Khoo, Jos Jonkers, Duncan Sproul, Eric W.‐F. Lam
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41388-020-01606-3

Comparative analysis of the AIB1 interactome in breast cancer reveals MTA2 as a repressive partner which silences E-Cadherin to promote EMT and associates with a pro-metastatic phenotype
Cited by: 8
Author(s): Damir Varešlija, Elspeth Ward, Siobhan Purcell, Nicola Cosgrove, Sinéad Cocchiglia, Philip J O'Halloran, Sara Charmsaz, Fiona T. Bane, Francesca Brett, Michael Farrell, Jane Cryan, Alan Beausang, Lance Hudson, Arran K Turnbul, J. M. Dixon, Arnold D. Hill, Nolan Priedigkeit, Steffi Oesterreich, Adrian V. Lee, Andrew H. Sims, Aisling M. Redmond, Jason S. Carroll, Leonie S. Young
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41388-021-01899-y

MUC1-C activates the PBAF chromatin remodeling complex in integrating redox balance with progression of human prostate cancer stem cells
Cited by: 31
Author(s): Masaru Hagiwara, Atsushi Fushimi, Nami Yamashita, Atrayee Bhattacharya, Hasan Rajabi, Mark D. Long, Yota Yasumizu, Mototsugu Oya, Song Liu, Donald Küfe
Software Mentions: 1
Published: over 5 years ago

10.1673/031.009.1801

The Insect Chemoreceptor Superfamily inDrosophila pseudoobscura: Molecular Evolution of Ecologically-Relevant Genes Over 25 Million Years
Cited by: 16
Author(s): Hugh M. Robertson
Software Mentions: 1
Published: over 17 years ago

10.1515/jib-2021-0001

Novel perspectives for SARS-CoV-2 genome browsing
Cited by: 2
Author(s): Visam Gültekin, Jens Allmer
Software Mentions: 1
Published: over 5 years ago

10.1194/jlr.M062497

miR-146a-5p inhibits TNF-α-induced adipogenesis via targeting insulin receptor in primary porcine adipocytes
Cited by: 36
Author(s): Di Wu, Qianyun Xi, Xiao Cheng, Tao Dong, Xiaotong Zhu, Gang Shu, Lina Wang, Qingyan Jiang, Yongliang Zhang
Software Mentions: 1
Published: over 10 years ago

10.1155/2013/517943

Association of RXR-Gamma Gene Variants with Familial Combined Hyperlipidemia: Genotype and Haplotype Analysis
Cited by: 17
Author(s): Federica Sentinelli, Ilenia Minicocci, Anna Mestice, Luisa Nanni, Stefano Romeo, Michela Incani, Maria Gisella Cavallo, Andrea Lenzi, Marcello Arca, Marco Giorgio Baroni
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13256-018-1608-0

Novel compound heterozygote mutations in the ATP7B gene in an Iranian family with Wilson disease: a case report
Cited by: 8
Author(s): Omid Daneshjoo, Masoud Garshasbi
Software Mentions: 1
Published: over 8 years ago

10.1007/s12031-018-1044-z

The Regulation of Monoamine Oxidase A Gene Expression by Distinct Variable Number Tandem Repeats
Cited by: 19
Author(s): Maurizio Manca, Veridiana Pessoa, Ana Illera Lopez, Patrick T. Harrison, Fábio Miyajima, Helen Sharp, Andrew Pickles, Jonathan Hill, Chris Murgatroyd, Vivien J. Bubb, John P. Quinn
Software Mentions: 1
Published: over 8 years ago

10.18502/jovr.v15i2.6730

Screening for Novel LOX and SOD1 Variants in Keratoconus Patients from Brazil
Cited by: 8
Author(s): Diego Nery Benevides Gadelha, Alex Felipe Barbosa Feitosa, Rafaela Gomes da Silva, Luana Talita Antunes, Matheus Cavalcanti Muniz, Matheus Alencar de Oliveira, Dáfine de Oliveira Andrade, Nathalia Mayanna da Paz Silva, Sebastião Cronemberger, Bruno Luiz Fonseca Schamber-Reis
Software Mentions: 1
Published: over 6 years ago

10.1016/j.isci.2019.10.055

Deciphering the Gene Regulatory Landscape Encoded in DNA Biophysical Features
Cited by: 7
Author(s): Abhijeet Pataskar, Willem Vanderlinden, Johannes Friedrich Emmerig, Aditi Singh, Jan Lipfert, Vijay Tiwari
Software Mentions: 1
Published: about 7 years ago

10.1186/s13048-021-00834-9

p38β - MAPK11 and its role in female cancers
Cited by: 11
Author(s): Periklis Katopodis, Rachel Kerslake, Athanasios Zikopoulos, Nefeli Eirini Beri, Vladimir Anikin
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.7715

P300 acetyltransferase regulates fatty acid synthase expression, lipid metabolism and prostate cancer growth
Cited by: 41
Author(s): Xiaokun Gang, Yinhui Yang, Jian Zhong, Kui Jiang, Yunqian Pan, Jeffrey Karnes, Jun Zhang, Wanhai Xu, Guixia Wang, Haojie Huang
Software Mentions: 1
Published: over 10 years ago

10.1186/s11689-015-9122-9

CNTN6 copy number variations in 14 patients: a possible candidate gene for neurodevelopmental and neuropsychiatric disorders
Cited by: 63
Author(s): Jie Hu, Jun Liao, Malini Sathanoori, Sally J. Kochmar, Jessica Sebastian, Svetlana A. Yatsenko, Urvashi Surti
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0220512

Whole genome sequencing and rare variant analysis in essential tremor families
Cited by: 28
Author(s): Zagaa Odgerel, Shilpa Sonti, Nora Hernández, Jemin Park, Ruth Ottman, Elan D. Louis, Lorraine N. Clark
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0136929

Genome-Wide Identification and Expression of Xenopus F-Box Family of Proteins
Cited by: 3
Author(s): Banu Saritas-Yildirim, Hannah A. Pliner, Angelica Ochoa, Elena M. Silva
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0120256

Retroviruses Hijack Chromatin Loops to Drive Oncogene Expression and Highlight the Chromatin Architecture around Proto-Oncogenic Loci
Cited by: 4
Author(s): Jillian M. Pattison, Jason Wright, Michael Cole
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0003726

MicroRNA Expression Patterns and Function in Endodermal Differentiation of Human Embryonic Stem Cells
Cited by: 107
Author(s): Galit Tzur, Asaf Levy, Eti Meiri, Omer Barad, Yael Spector, Zvi Bentwich, Lina Mizrahi, Mark Katzenellenbogen, Etti Ben-Shushan, Benjamin Reubinoff, Eithan Galun
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0126403

The Mechanism of Environmental Endocrine Disruptors (DEHP) Induces Epigenetic Transgenerational Inheritance of Cryptorchidism
Cited by: 44
Author(s): Jinjun Chen, Shengde Wu, Sheng Wen, Lianju Shen, Jinpu Peng, Chao Yan, Xining Cao, Yue Zhou, Long Chen, Tao Lin, Dalin He, Yi Hua, Guanghui Wei
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0092815

Association of DSC3 mRNA Down-Regulation in Prostate Cancer with Promoter Hypermethylation and Poor Prognosis
Cited by: 18
Author(s): Jun Pan, Yu Chen, Chengqiang Mo, Daohu Wang, Junxing Chen, Xiaopeng Mao, Shengjie Guo, Sian Liu, Shaopeng Qiu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0171300

Identification of the early and late responder genes during the generation of induced pluripotent stem cells from mouse fibroblasts
Cited by: 3
Author(s): Jihwan Park, Yoo Wook Kwon, Seokjin Ham, Chang Pyo Hong, Seong-Hye Seo, Moon Kyung Choe, So I. Shin, Choon Soo Lee, Hyo Soo Kim, Tae-Young Roh
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0048732

Genome-Wide Identification of Copy Number Variations in Chinese Holstein
Cited by: 46
Author(s): Li Jiang, Jicai Jiang, Jiying Wang, Xiangdong Ding, J. Liu, Qin Zhang
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0004047

Chromosomal Inversions between Human and Chimpanzee Lineages Caused by Retrotransposons
Cited by: 83
Author(s): Jungnam Lee, Kyudong Han, Thomas J. Meyer, Heui-Soo Kim, Mark A. Batzer
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0111721

Tempo and Mode of Gene Duplication in Mammalian Ribosomal Protein Evolution
Cited by: 13
Author(s): Asav P. Dharia, Ajay Obla, Matthew D. Gajdosik, Amanda Simon, Craig E. Nelson
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0008960

SOX2 Is an Oncogene Activated by Recurrent 3q26.3 Amplifications in Human Lung Squamous Cell Carcinomas
Cited by: 272
Author(s): Thomas Hussenet, Soraya Dali, Julien Exinger, Ben Monga, Bernard Jost, Doulaye Dembelé, Nadine Martinet, Christelle Thibault, Joerg Huelsken, Élisabeth Brambilla, Stanislas du Manoir
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0040637

An Effort to Use Human-Based Exome Capture Methods to Analyze Chimpanzee and Macaque Exomes
Cited by: 23
Author(s): Xin Jin, Mingze He, Betsy Ferguson, Yuhuan Meng, Limei Ouyang, Jingjing Ren, Thomas Mailund, Fei Sun, Liangdan Sun, Juan Shen, Min Zhuo, Li Song, Jufang Wang, Fei Ling, Yuqi Zhu, Christina Hvilsom, Hans R. Siegismund, Xiaoming Liu, Zhuolin Gong, Fang Ji, Xinzhong Wang, Boqing Liu, Yu Zhang, Jingli Hou, Jing Wang, Hua Zhao, Yanyi Wang, Xiaodong Fang, Guojie Zhang, Jian Wang, Xuejun Zhang, Mikkel H. Schierup, Hongli Du, Jun Wang, Xiaoning Wang
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0092707

Epigenetic Silencing of TFPI-2 in Canine Diffuse Large B-Cell Lymphoma
Cited by: 32
Author(s): Serena Ferraresso, Silvia Bresolin, Arianna Aricò, S. Comazzi, Maria Elena Gelain, Fulvio Riondato, Luca Bargelloni, Laura Marconato, Geertruy te Kronnie, Luca Aresu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0118737

SNAP23 Regulates Endothelial Exocytosis of von Willebrand Factor
Cited by: 33
Author(s): Qinglin Zhu, Munekazu Yamakuchi, Charles J. Lowenstein
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0006458

Punicic Acid a Conjugated Linolenic Acid Inhibits TNFα-Induced Neutrophil Hyperactivation and Protects from Experimental Colon Inflammation in Rats
Cited by: 105
Author(s): Tarek Boussetta, Houssam Raad, Philippe Lettéron, Marie‐Anne Gougerot‐Pocidalo, Jean‐Claude Marie, Fathi Driss, Jamel El-Benna
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0122797

Identification of Novel Loci Associated with Gastrointestinal Parasite Resistance in a Red Maasai x Dorper Backcross Population
Cited by: 56
Author(s): Magda Vieira Benavides, Tad S. Sonstegard, Stephen J. Kemp, J. M. Mugambi, John P. Gibson, R.L. Baker, Olivier Hanotte, Karen Marshall, C. P. van Tassell
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0028787

Cooperative Genome-Wide Analysis Shows Increased Homozygosity in Early Onset Parkinson's Disease
Cited by: 22
Author(s): Javier Simón‐Sánchez, Laura L. Kilarski, Michael A. Nalls, María Martínez, Claudia Schulte, Peter Alan Holmans, Thomas Gasser, John Hardy, Andrew B. Singleton, Nicholas W. Wood, Alexis Brice, Peter Heutink, Nigel Williams, Huw R. Morris
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0030677

ISL1 Directly Regulates FGF10 Transcription during Human Cardiac Outflow Formation
Cited by: 43
Author(s): Christelle Golzio, Emmanuelle Havis, Philippe Daubas, Grégory Nuel, Candice Babarit, Arnold Münnich, Michel Vekemans, Stéphane Zaffran, Stanislas Lyonnet, Heather C. Etchevers
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0008693

Genome-Wide Analyses of Gene Expression during Mouse Endochondral Ossification
Cited by: 47
Author(s): Claudine G. James, Lee‐Anne Stanton, Hanga Agoston, Veronica Ulici, T. Michael Underhill, Frank Beier
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0205109

Functional analysis of a triplet deletion in the gene encoding the sodium glucose transporter 3, a potential risk factor for ADHD
Cited by: 5
Author(s): Nadine Schäfer, M Friedrich, Morten Jørgensen, Sina Kollert, Hermann Koepsell, Erhard Wischmeyer, Klaus‐Peter Lesch, Dietmar Geiger, Frank Döring
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0016685

Detection and Removal of Biases in the Analysis of Next-Generation Sequencing Reads
Cited by: 88
Author(s): Schraga Schwartz, Oren Ram, Gil Ast
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0042371

Mating of the Stichotrichous Ciliate Oxytricha trifallax Induces Production of a Class of 27 nt Small RNAs Derived from the Parental Macronucleus
Cited by: 40
Author(s): Alan M. Zahler, Zachary T. Neeb, Athena W. Lin, Sol Katzman
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0201041

Diagnostic value of partial exome sequencing in developmental disorders
Cited by: 33
Author(s): Laura Gieldon, Luisa Mackenroth, Anne‐Karin Kahlert, Johannes R. Lemke, Joseph Porrmann, Jens Schallner, Maja von der Hagen, Susanne Markus, Sabine Weidensee, Barbara Novotna, Charlotte Soerensen, Barbara Klink, Johannes Maximilian Wagner, Andreas Tzschach, Arne Jahn, Franziska Kuhlee, Karl Hackmann, Evelin Schröck, Nataliya Di Donato, Andreas Rump
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0059577

The Turkey Ig-Like Receptor Family: Identification, Expression and Function
Cited by: 10
Author(s): Katharina Windau, Birgit C. Viertlboeck, Thomas Göbel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0004496

Genetic Variants of Wnt Transcription Factor TCF-4 (TCF7L2) Putative Promoter Region Are Associated with Small Intestinal Crohn's Disease
Cited by: 126
Author(s): Maureen J. Koslowski, I. Kübler, Mathias Chamaillard, Elke Schaeffeler, Walter Reinisch, Guoxing Wang, Julia Beisner, Alexander Teml, Laurent Peyrin–Biroulet, Stefan Winter, Klaus Herrlinger, Paul Rutgeerts, Séverine Vermeire, Rachel Cooney, Klaus Fellermann, D P Jewell, Charles L. Bevins, Matthias Schwab, Eduard F. Stange, Jan Wehkamp
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0060465

Gene Regulation by CcpA and Catabolite Repression Explored by RNA-Seq in Streptococcus mutans
Cited by: 64
Author(s): Lin Zeng, Sang Chul Choi, Charles G. Danko, Adam Siepel, Michael J. Stanhope, Robert A. Burne
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0008743

Enhanced Binding of Poly(ADP-ribose)polymerase-1 and Ku80/70 to the ITGA2 Promoter via an Extended Cytosine-Adenosine Repeat
Cited by: 11
Author(s): Yann Chéli, Shirley Williams, Robert Ballotti, Diane J. Nugent, Thomas J. Kunicki
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0077224

Alternative 5’ Untranslated Regions Are Involved in Expression Regulation of Human Heme Oxygenase-1
Cited by: 39
Author(s): Marcel Kramer, Christoph Sponholz, Monique Slaba, Bianka Wissuwa, Ralf A. Claus, Uwe Menzel, Klaus Huse, Matthias Platzer, Michael Bauer
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0136227

Hepatitis C Virus Driven AXL Expression Suppresses the Hepatic Type I Interferon Response
Cited by: 17
Author(s): Scott A. Read, Enoch Tay, Mahsa Shahidi, K. O'Connor, David R. Booth, Jacob George, Mark W. Douglas
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0115358

Genome-Wide H3K4me3 Analysis in Angus Cattle with Divergent Tenderness
Cited by: 14
Author(s): Chunping Zhao, José A. Carrillo, Fei Tian, Zan Liu, Scott M. Updike, Keji Zhao, Fei Zhan, Jiuzhou Song
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0121748

Sepsis Induces Specific Changes in Histone Modification Patterns in Human Monocytes
Cited by: 38
Author(s): Sebastian Weiterer, Florian Uhle, Christoph Lichtenstern, Benedikt Hermann Siegler, Sabin Bhuju, Michael Jarek, Marek Bartkuhn, Markus Weigand
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0147697

MutAid: Sanger and NGS Based Integrated Pipeline for Mutation Identification, Validation and Annotation in Human Molecular Genetics
Cited by: 5
Author(s): Ram Vinay Pandey, Stephan Pabinger, Albert Kriegner, Andreas Weinhäusel
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0111362

Synergistic Effect of High Charge and Energy Particle Radiation and Chronological Age on Biomarkers of Oxidative Stress and Tissue Degeneration: A Ground-Based Study Using the Vertebrate Laboratory Model Organism Oryzias latipes
Cited by: 5
Author(s): Xuan Zheng, Xinyan Zhang, Lingling Ding, Jeffrey R. Lee, Paul M. Weinberger, William S. Dynan
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0014697

ENCODE Tiling Array Analysis Identifies Differentially Expressed Annotated and Novel 5′ Capped RNAs in Hepatitis C Infected Liver
Cited by: 19
Author(s): Milan E. Folkers, Don A. Delker, Christopher I. Maxwell, Cassie A. Nelson, Jason J. Schwartz, David A. Nix, Curt H. Hagedorn
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0235857

Broadening our understanding of the genetics of Juvenile Idiopathic Arthritis (JIA): Interrogation of three dimensional chromatin structures and genetic regulatory elements within JIA-associated risk loci
Cited by: 5
Author(s): Kaiyu Jiang, Haeja Kessler, Yungki Park, Marc Sudman, Susan D. Thompson, James N. Jarvis
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0177406

Differential DNA methylation of MSI2 and its correlation with diabetic traits
Cited by: 14
Author(s): Jae‐Pil Jeon, In-Uk Koh, Nak-Hyun Choi, Bong-Jo Kim, Bok‐Ghee Han, Suman Lee
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0222788

Additive and heterozygous (dis)advantage GWAS models reveal candidate genes involved in the genotypic variation of maize hybrids to Azospirillum brasilense
Cited by: 17
Author(s): Miriam Suzane Vidotti, Danilo Hottis Lyra, Júlia Silva Morosini, Ítalo Stefanine Correia Granato, Maria Carolina Quecine, João Lúcio de Azevedo, Roberto Fritsche‐Neto
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0045173

Stem Cell Selection In Vivo Using Foamy Vectors Cures Canine Pyruvate Kinase Deficiency
Cited by: 23
Author(s): Grant D. Trobridge, Brian C. Beard, Ryan Wu, Christina Ironside, Punam Malik, Hans Peter Kiem
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0088880

Computational Characterization of Modes of Transcriptional Regulation of Nuclear Receptor Genes
Cited by: 6
Author(s): Yogita Sharma, Chandra Sekhar Reddy Chilamakuri, Marit Bakke, Boris Lenhard
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0016330

Genome-Wide Analysis of Transcriptional Reprogramming in Mouse Models of Acute Myeloid Leukaemia
Cited by: 29
Author(s): Nicolas Bonadies, Samuel D. Foster, Wai In Chan, Brynn T. Kvinlaug, Dominik Spensberger, Mark A. Dawson, Elaine Spooncer, Anthony D. Whetton, Andrew J. Bannister, Brian J. P. Huntly, Berthold Göttgens
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0066722

DNA Methylation Patterns Facilitate the Identification of MicroRNA Transcription Start Sites: A Brain-Specific Study
Cited by: 8
Author(s): Tapas Bhadra, Malay Bhattacharyya, Lars Feuerbach, Thomas Lengauer, Sanghamitra Bandyopadhyay
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0211111

HIV-1 infection increases microRNAs that inhibit Dicer1, HRB and HIV-EP2, thereby reducing viral replication
Cited by: 18
Author(s): Shira Modai, Luba Farberov, Eytan Herzig, Ofer Isakov, Amnon Hizi, Noam Shomron
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0182946

Whole gene sequencing identifies deep-intronic variants with potential functional impact in patients with hypertrophic cardiomyopathy
Cited by: 26
Author(s): Rita Mendes de Almeida, Joana Tavares, Sandra Martins, Tereza Cristina de Carvalho, Francisco J. Enguita, Dulce Brito, Maria Carmo‐Fonseca, Luís Rocha Lopes
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0091793

The Cellular Distribution and Ser262 Phosphorylation of Tau Protein Are Regulated by BDNF In Vitro
Cited by: 19
Author(s): Qian Chen, Zhou Zhou, Lei Zhang, Shangcheng Xu, Chunhai Chen, Zhengping Yu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0011474

Worldwide Distribution of the MYH9 Kidney Disease Susceptibility Alleles and Haplotypes: Evidence of Historical Selection in Africa
Cited by: 33
Author(s): Tarás K. Oleksyk, George W. Nelson, Ping An, Jeffrey B. Kopp, Cheryl A. Winkler
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0007904

Epigenetic Features of Human Mesenchymal Stem Cells Determine Their Permissiveness for Induction of Relevant Transcriptional Changes by SYT-SSX1
Cited by: 42
Author(s): Luisa Cironi, Paolo Provero, Nicola Riggi, Michalina Janiszewska, Domizio Suvà, Mario-Luca Suvà, Vincent Kindler, Ivan Stamenkovic
Software Mentions: 1
Published: almost 17 years ago

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