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10.2196/jmir.1833

WikiBuild: A New Online Collaboration Process For Multistakeholder Tool Development and Consensus Building
Cited by: 30
Author(s): Samir Gupta, Flora Wan, David Newton, Onil Bhattacharyya, Mark Chignell, Sharon E. Straus
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-13-367

Evidence for sequence biases associated with patterns of histone methylation
Cited by: 11
Author(s): Zhong Wang, Huntington F. Willard
Software Mentions: 1
Published: over 14 years ago

10.2196/15649

Effectiveness of eHealth Nutritional Interventions for Middle-Aged and Older Adults: Systematic Review and Meta-analysis
Cited by: 14
Author(s): Caroline Robert, Mojisola Erdt, James Chong Boi Lee, Yuanyuan Cao, Nurhazimah Binte Naharudin, Yin Leng Theng
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-015-2107-y

Replicate exome-sequencing in a multiple-generation family: improved interpretation of next-generation sequencing data
Cited by: 6
Author(s): Praveen F. Cherukuri, Valerie V. Maduro, Karin Fuentes-Fajardo, Kevin Lam, David R. Adams, Cynthia J. Tifft, James C. Mullikin, William A. Gahl, Cornelius F. Boerkoel
Software Mentions: 1
Published: almost 11 years ago

10.1186/1866-1955-6-17

A CTNNA3 compound heterozygous deletion implicates a role for αT-catenin in susceptibility to autism spectrum disorder
Cited by: 37
Author(s): Elena Bacchelli, Fabiola Ceroni, Dalila Pinto, Silvia Lomartire, Maila Giannandrea, Patrizia D’Adamo, Elena Bonora, Piero Parchi, Raffaella Tancredi, Agatino Battaglia, Elena Maestrini
Software Mentions: 1
Published: about 12 years ago

10.1038/s41439-020-00127-5

A reference catalog of DNA palindromes in the human genome and their variations in 1000 Genomes
Cited by: 10
Author(s): Madhavi K. Ganapathiraju, Sandeep Subramanian, Srilakshmi Chaparala, Kalyani B. Karunakaran
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12979-015-0045-9

Decline of FOXN1 gene expression in human thymus correlates with age: possible epigenetic regulation
Cited by: 21
Author(s): Marlon M. Reis, Krisztián Csomós, Luciene Paschoal Braga Dias, Zsolt Prodán, Tamás Szerafin, Wilson Savino, László Takács
Software Mentions: 1
Published: almost 11 years ago

10.1186/s11689-015-9122-9

CNTN6 copy number variations in 14 patients: a possible candidate gene for neurodevelopmental and neuropsychiatric disorders
Cited by: 63
Author(s): Jie Hu, Jun Liao, Malini Sathanoori, Sally J. Kochmar, Jessica Sebastian, Svetlana A. Yatsenko, Urvashi Surti
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2164-14-122

Comparative genomics using teleost fish helps to systematically identify target gene bodies of functionally defined human enhancers
Cited by: 15
Author(s): Nazia Parveen, Ayesha Masood, Nouman Iftikhar, Bushra Fazal Minhas, Rashid Minhas, Uzma Nawaz, Amir Ali Abbasi
Software Mentions: 1
Published: over 13 years ago

10.1111/j.1365-2583.2006.00679.x

Nuclear receptors of the honey bee: annotation and expression in the adult brain
Cited by: 72
Author(s): Rodrigo Velarde, Gene E. Robinson, Susan E. Fahrbach
Software Mentions: 1
Published: almost 20 years ago

10.1155/2021/3064224

The Genetic Research in Alzheimer Disease (GERALD) Initiative Finds rs9320913 as a Neural eQTL of lincRNA AL589740.1
Cited by: 1
Author(s): Lidia Lopez-Gutierrez, José María García‐Alberca, Silvia Mendoza, Esther Gris, María Paz De la Guía, José Manuel Marín-Carmona, Emilio Alarcón‐Martín, Almudena Lobato, José Manuel Cruz‐Gamero, Laura Cura, Olga Ocejo, Javier Torrecilla, María Dolores Nieto, Concepción Urbano, Nuria Pareja, Macarena Luque, María García-Peralta, Rosario Carrillejo, José Luis Royo
Software Mentions: 1
Published: almost 5 years ago

10.1001/jamanetworkopen.2021.16839

Genetic Variants Associated With Intraparenchymal Hemorrhage Progression After Traumatic Brain Injury
Cited by: 11
Author(s): Ruchira M. Jha, Benjamin Zusman, Ava M. Puccio, David O. Okonkwo, Matthew Pease, Shashvat M Desai, Matthew R Leach, Yvette P. Conley, Patrick M. Kochanek
Software Mentions: 1
Published: about 5 years ago

10.18632/aging.101470

Integrated DNA methylation and gene expression analysis identifies SLAMF7 as a key regulator of atherosclerosis
Cited by: 13
Author(s): Zhangyong Xia, Minghong Gu, Xiaodong Jia, Xiaoting Wang, Chunxia Wu, Jiangwen Guo, Liyong Zhang, Yifeng Du, Jiyue Wang
Software Mentions: 1
Published: about 8 years ago

10.1186/2040-2384-2-15

Fine mapping of the hereditary haemorrhagic telangiectasia (HHT)3 locus on chromosome 5 excludes VE-Cadherin-2, Sprouty4 and other interval genes
Cited by: 17
Author(s): Fatima S Govani, CL Shovlin
Software Mentions: 1
Published: over 16 years ago

10.1007/s10815-016-0795-0

Isolation and expression of the human gametocyte-specific factor 1 gene (GTSF1) in fetal ovary, oocytes, and preimplantation embryos
Cited by: 9
Author(s): John Huntriss, Jianping Lu, Karen Hemmings, Rosemary A. L. Bayne, Richard A. Anderson, Anthony J. Rutherford, Adam Balen, Kay Elder, Helen M. Picton
Software Mentions: 1
Published: almost 10 years ago

10.1007/s10815-021-02104-5

Cell-based non-invasive prenatal testing for monogenic disorders: confirmation of unaffected fetuses following preimplantation genetic testing
Cited by: 6
Author(s): Christian Liebst Frisk Toft, Hans Jakob Ingerslev, Ulrik Schiøler Kesmodel, Lotte Hatt, Ripudaman Singh, Katarina Ravn, Bolette Hestbek Nicolaisen, Inga Baasch Christensen, Mathias Kølvraa, Line Dahl Jeppesen, Palle Schelde, Ida Vogel, Niels Uldbjerg, Richard Farlie, Steffen Sommer, Marianne Louise Vang Østergård, Ann Nygaard Jensen, Helle Smidt Mogensen, Kristín Rós Kjartansdóttir, Birte Degn, Henrik Okkels, Anja Ernst, Inge Søkilde Pedersen
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-8-470

Maintenance of transposon-free regions throughout vertebrate evolution
Cited by: 32
Author(s): Cas Simons, Igor V. Makunin, Michael Pheasant, John S. Mattick
Software Mentions: 1
Published: over 18 years ago

10.1074/jbc.M112.414367

Human and Viral Golgi Anti-apoptotic Proteins (GAAPs) Oligomerize via Different Mechanisms and Monomeric GAAP Inhibits Apoptosis and Modulates Calcium
Cited by: 32
Author(s): Nuno Saraiva, David L. Prole, Guia Carrara, Carlos Maluquer de Motes, Benjamin F. Johnson, Bernadette Byrne, Colin W. Taylor, Geoffrey L. Smith
Software Mentions: 1
Published: over 13 years ago

10.1074/jbc.M115.700856

Entry of Bluetongue Virus Capsid Requires the Late Endosome-specific Lipid Lysobisphosphatidic Acid
Cited by: 26
Author(s): Avnish Patel, Bjorn-Patrick Mohl, Polly Roy
Software Mentions: 1
Published: about 10 years ago

10.1016/j.jbc.2021.100704

Sp1 is a substrate of Keap1 and regulates the activity of CRL4AWDR23 ubiquitin ligase toward Nrf2
Cited by: 9
Author(s): Ferbian Milas Siswanto, Ami Oguro, Shingi Imaoka
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100697

Loss of Down syndrome critical region-1 leads to cholesterol metabolic dysfunction that exaggerates hypercholesterolemia in ApoE-null background
Cited by: 1
Author(s): Masashi Matsushima, Tsuyoshi Osawa, Yuri Miyamura, Suguru Nakagawa, Toshiya Tanaka, Tatsuhiko Kodama, Hiroyuki Aburatani, Juro Sakai, Sandra Ryeom, Takashi Minami
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-14-69

High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome
Cited by: 81
Author(s): Gianni Liti, Alex N Nguyen Ba, Martin Blythe, Carolin A. Müller, Anders Bergström, Francisco A. Cubillos, Felix Dafhnis-Calas, Shima Khoshraftar, Sunir Malla, Neel Mehta, Cheuk Chuen Siow, Jonas Warringer, Alan M. Moses, Edward J. Louis, Conrad A. Nieduszynski
Software Mentions: 1
Published: over 13 years ago

10.1186/s12929-015-0123-5

Evaluation of Neurotrophic Tyrosine Receptor Kinase 2 (NTRK2) as a positional candidate gene for variation in estimated Glomerular Filtration Rate (eGFR) in Mexican American participants of San Antonio Family Heart Study
Cited by: 4
Author(s): Farook Thameem, V. Saroja Voruganti, John Blangero, Anthony G. Comuzzie, Hanna E. Abboud
Software Mentions: 1
Published: over 11 years ago

10.18502/jovr.v15i2.6730

Screening for Novel LOX and SOD1 Variants in Keratoconus Patients from Brazil
Cited by: 8
Author(s): Diego Nery Benevides Gadelha, Alex Felipe Barbosa Feitosa, Rafaela Gomes da Silva, Luana Talita Antunes, Matheus Cavalcanti Muniz, Matheus Alencar de Oliveira, Dáfine de Oliveira Andrade, Nathalia Mayanna da Paz Silva, Sebastião Cronemberger, Bruno Luiz Fonseca Schamber-Reis
Software Mentions: 1
Published: over 6 years ago

10.1186/s13326-015-0030-4

Improving the Sequence Ontology terminology for genomic variant annotation
Cited by: 23
Author(s): Fiona Cunningham, Barry Moore, Nicole Ruiz-Schultz, Graham R. S. Ritchie, Karen Eilbeck
Software Mentions: 1
Published: about 11 years ago

10.1016/j.isci.2019.10.055

Deciphering the Gene Regulatory Landscape Encoded in DNA Biophysical Features
Cited by: 7
Author(s): Abhijeet Pataskar, Willem Vanderlinden, Johannes Friedrich Emmerig, Aditi Singh, Jan Lipfert, Vijay Tiwari
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13326-021-00250-4

CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature
Cited by: 7
Author(s): Anthony Huffman, Anna Maria Masci, Jie Zheng, Nasim Sanati, Timothy Brunson, Guanming Wu, Yongqun He
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00432-021-03519-4

Comprehensive analysis of regulation of DNA methyltransferase isoforms in human breast tumors
Cited by: 18
Author(s): Mangala Hegde, Manjunath B. Joshi
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-12532-y

SHH signaling directed by two oral epithelium-specific enhancers controls tooth and oral development
Cited by: 22
Author(s): Tomoko Sagai, Takanori Amano, Akiteru Maeno, Hiroshi Kanazawa, Hye-Jin Seo, Sung Won Cho, Toshihiko Shiroishi
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12864-016-2441-8

The effects of sample size on population genomic analyses – implications for the tests of neutrality
Cited by: 50
Author(s): Sankar Subramanian
Software Mentions: 1
Published: over 10 years ago

10.1111/jcmm.16694

Interplay between SARS‐CoV‐2‐derived miRNAs, immune system, vitamin D pathway and respiratory system
Cited by: 6
Author(s): Elham Karimi, Hanieh Azari, Maryam Yari, Ahmad Tahmasebi, Mehdi Hassani Azad, Pegah Mousavi
Software Mentions: 1
Published: about 5 years ago

10.1186/2043-9113-4-5

FISH Oracle 2: a web server for integrative visualization of genomic data in cancer research
Cited by: 5
Author(s): Malte Mäder, Ronald Simon, Stefan Kurtz
Software Mentions: 1
Published: over 12 years ago

10.1186/2043-9113-5-S1-S6

The Integrated Data Repository Toolkit (IDRT): accelerating translational research infrastructures
Cited by: 5
Author(s): Christian R. Bauer, Thomas Ganslandt, Benjamin Baum, Jan Christoph, Igor Engel, Matthias Löbe, Sebastian Mate, Hans‐Ulrich Prokosch, Ulrich Sax, Sebastian Stäubert, Alfred Winter
Software Mentions: 1
Published: over 11 years ago

10.3390/jcm7020026

Effect of MUC8 on Airway Inflammation: A Friend or a Foe?
Cited by: 6
Author(s): Hee‐Jae Cha, Kyoung Seob Song
Software Mentions: 1
Published: over 8 years ago

10.3390/jcm9030625

A New Risk Variant for Multiple Sclerosis at 11q23.3 Locus Is Associated with Expansion of CXCR5+ Circulating Regulatory T Cells
Cited by: 5
Author(s): Elia Gil‐Varea, Marı́a Fedetz, Herena Eixarch, Nino Spataro, Luisa María Villar, Elena Urcelay, Albert Sáiz, Óscar Fernández, Laura Leyva, Lluı́s Ramió-Torrentà, Koen Vandenbroeck, David Otaegui, Tamara Castillo-Triviño, Guillermo Izquierdo, Sunny Malhotra, Elena Bosch, Arcadi Navarro, Antonio Alcina, Xavier Montalbán, Fuencisla Matesanz, Manuel Comabella
Software Mentions: 1
Published: over 6 years ago

10.1186/s13048-021-00834-9

p38β - MAPK11 and its role in female cancers
Cited by: 11
Author(s): Periklis Katopodis, Rachel Kerslake, Athanasios Zikopoulos, Nefeli Eirini Beri, Vladimir Anikin
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.7715

P300 acetyltransferase regulates fatty acid synthase expression, lipid metabolism and prostate cancer growth
Cited by: 41
Author(s): Xiaokun Gang, Yinhui Yang, Jian Zhong, Kui Jiang, Yunqian Pan, Jeffrey Karnes, Jun Zhang, Wanhai Xu, Guixia Wang, Haojie Huang
Software Mentions: 1
Published: over 10 years ago

10.1093/jxb/erw015

Natural variation in rosette size under salt stress conditions corresponds to developmental differences between Arabidopsis accessions and allelic variation in theLRR-KISSgene
Cited by: 57
Author(s): Magdalena Julkowska, Karlijn Klei, Like Fokkens, Michel A. Haring, M. Eric Schranz, Christa Testerink
Software Mentions: 1
Published: over 10 years ago

10.1093/jxb/erw358

PgLOX6encoding a lipoxygenase contributes to jasmonic acid biosynthesis and ginsenoside production inPanax ginseng
Cited by: 25
Author(s): Shadi Rahimi, Yujin Kim, Dabing Zhang, Deok-Chun Yang
Software Mentions: 1
Published: almost 10 years ago

10.1093/jxb/erx014

Kiwifruit SVP2 gene prevents premature budbreak during dormancy
Cited by: 54
Author(s): Rui Wu, Tianchi Wang, Ben Warren, Andrew C. Allan, Richard C. Macknight, Erika Varkonyi‐Gasic
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/erw463

Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data
Cited by: 23
Author(s): Alisandra K. Denton, Janina Maß, Canan Külahoglu, Martin J. Lercher, Andrea Bräutigam, Andreas P.M. Weber
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/ery076

BIFURCATE FLOWER TRUSS: a novel locus controlling inflorescence branching in tomato contains a defective MAP kinase gene
Cited by: 3
Author(s): Demetryus Silva Ferreira, Zoltán Kevei, Tomasz J. Kurowski, Maria Esther de Noronha Fonseca, Fady Mohareb, L. S. Boiteux, Andrew J. Thompson
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.7937

Tumor-promoting function and prognostic significance of the RNA-binding protein T-cell intracellular antigen-1 in esophageal squamous cell carcinoma
Cited by: 17
Author(s): Junichi Hamada, Katsutoshi Shoda, Kiyoshi Masuda, Yuji Fujita, Takuya Naruto, Tomohiro Kohmoto, Yuko Miyakami, Miki Watanabe, Yasusei Kudo, Hitoshi Fujiwara, Daisuke Ichikawa, Eigo Otsuji, Issei Imoto
Software Mentions: 1
Published: over 10 years ago

10.1093/jxb/erab238

Sphingolipid Δ4-desaturation is an important metabolic step for glycosylceramide formation in Physcomitrium patens
Cited by: 3
Author(s): Jasmin Gömann, Cornelia Herrfurth, Krzysztof Zienkiewicz, Tegan M. Haslam, Ivo Feußner
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1001046

Kaposin-B Enhances the PROX1 mRNA Stability during Lymphatic Reprogramming of Vascular Endothelial Cells by Kaposi's Sarcoma Herpes Virus
Cited by: 57
Author(s): Jae Gyu Yoo, Jeehoon Kang, Ha Neul Lee, Berenice Aguilar, Kafka Darren, Sun-Ju Lee, Inho Choi, Juneyong Lee, Swapnika Ramu, Juergen Haas, Chester J. Koh, Young Kwon Hong
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.ppat.1003066

TgCDPK3 Regulates Calcium-Dependent Egress of Toxoplasma gondii from Host Cells
Cited by: 126
Author(s): John J. McCoy, Lachlan Whitehead, Giel G. van Dooren, Christopher J. Tonkin
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003475

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites
Cited by: 390
Author(s): Philipp Wiemann, Christian M. K. Sieber, Katharina Walburga von Bargen, Lena Studt, Eva Maria Niehaus, José J. Espino, Kathleen Huß, Caroline B. Michielse, Sabine Albermann, Dominik Wagner, Sonja Verena Bergner, Lanelle Connolly, Andreas Fischer, Günter Reuter, Karin Kleigrewe, Till Bald, Brenda D. Wingfield, Ron Ophir, Stanley Freeman, Michael Hippler, Kristina M. Smith, Daren W. Brown, Robert H. Proctor, Martin Münsterkötter, Michael Freitag, Hans‐Ulrich Humpf, Ulrich Güldener, Bettina Tudzynski
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-9-320

T2D-Db: An integrated platform to study the molecular basis of Type 2 diabetes
Cited by: 37
Author(s): Shipra Agrawal, Nevenka Dimitrova, Prasanthi Nathan, K. R. Udayakumar, Swathi Lakshmi, Sriram Subramaniam, N Manjusha, Urmi Sengupta
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.ppat.1005031

Epstein-Barr Virus Proteins EBNA3A and EBNA3C Together Induce Expression of the Oncogenic MicroRNA Cluster miR-221/miR-222 and Ablate Expression of Its Target p57KIP2
Cited by: 34
Author(s): Quentin Bazot, Kostas Paschos, Lenka Skalska, Jens Kalchschmidt, Gillian A. Parker, Martin J. Allday
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2164-10-S3-S9

TTS Mapping: integrative WEB tool for analysis of triplex formation target DNA Sequences, G-quadruplets and non-protein coding regulatory DNA elements in the human genome
Cited by: 32
Author(s): Piroon Jenjaroenpun, Vladimir A. Kuznetsov
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.ppat.1005383

EBNA3C Directs Recruitment of RBPJ (CBF1) to Chromatin during the Process of Gene Repression in EBV Infected B Cells
Cited by: 22
Author(s): Jens Kalchschmidt, Adam C. T. Gillman, Kostas Paschos, Quentin Bazot, Bettina Kempkes, Martin J. Allday
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1006677

KSHV inhibits stress granule formation by viral ORF57 blocking PKR activation
Cited by: 52
Author(s): Nisha Sharma, Vladimır Majerčiak, Michael J. Kruhlak, Zhi-Ming Zheng
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1006820

Activation of PI3K, Akt, and ERK during early rotavirus infection leads to V-ATPase-dependent endosomal acidification required for uncoating
Cited by: 39
Author(s): Mahmoud Soliman, Ja-Young Seo, Deok-Song Kim, Jiyun Kim, Jun-Gyu Park, Mia Madel Alfajaro, Yeong-Bin Baek, Eun-Hyo Cho, Joseph Kwon, Jong‐Soon Choi, Mun-Il Kang, Sang-Ik Park, Kyoung-Oh Cho
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1006919

Addition of m6A to SV40 late mRNAs enhances viral structural gene expression and replication
Cited by: 108
Author(s): Kevin Tsai, David Courtney, Bryan R. Cullen
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-016-2627-0

CRISPRDetect: A flexible algorithm to define CRISPR arrays
Cited by: 245
Author(s): Ambarish Biswas, Raymond H.J. Staals, Sergio E. Morales, Peter C. Fineran, Chris M. Brown
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-10-209

ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii
Cited by: 80
Author(s): Patrick May, Jan-Ole Christian, Stefan Kempa, Dirk Walther
Software Mentions: 1
Published: over 17 years ago

10.18632/oncotarget.7764

Associations between polymorphisms of long non-coding RNA MEG3 and risk of colorectal cancer in Chinese
Cited by: 53
Author(s): Xin Cao, Shulin Zhuang, Yong Hu, Xi Liu, Lichun Deng, Sheng Huaming, Weisheng Shen
Software Mentions: 1
Published: over 10 years ago

10.1186/1750-1172-7-S2-A11

Speeding up research with the Semantic Web
Cited by: 1
Author(s): Marco Roos, Erik Schultes, Barend Mons
Software Mentions: 1
Published: over 14 years ago

10.1155/2007/26839

Comprehensive Analysis of PPAR<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="E1"><mml:mi>α</mml:mi></mml:math>-Dependent Regulation of Hepatic Lipid Metabolism by Expression Profiling
Cited by: 185
Author(s): Maryam Rakhshandehroo, Linda M. Sanderson, Merja Matilainen, Rinke Stienstra, Carsten Carlberg, Philip J. de Groot, Michael Müller, Sander Kersten
Software Mentions: 1
Published: over 19 years ago

10.18632/aging.101671

A CREB1/miR-433 reciprocal feedback loop modulates proliferation and metastasis in colorectal cancer
Cited by: 31
Author(s): Yan Li, Weiqiang You, Nengquan Sheng, Jianfeng Gong, Landian Hu, Gewen Tan, Hongqi Chen, Zhigang Wang
Software Mentions: 1
Published: over 7 years ago

10.1073/pnas.1909973116

An inhibitor of complement C5 provides structural insights into activation
Cited by: 23
Author(s): Martin Parnov Reichhardt, Steven Johnson, Terence Tang, Thomas J. Morgan, Nchimunya N. Tebeka, Niko Popitsch, Justin C. Deme, Matthijs M. Jore, Susan M. Lea
Software Mentions: 1
Published: over 6 years ago

10.1186/s13023-015-0251-8

Rare diseases in ICD11: making rare diseases visible in health information systems through appropriate coding
Cited by: 84
Author(s): Ségolène Aymé, Bertrand Bellet, Ana Rath
Software Mentions: 1
Published: over 11 years ago

10.1007/s11095-017-2130-6

Network Reconstruction Reveals that Valproic Acid Activates Neurogenic Transcriptional Programs in Adult Brain Following Traumatic Injury
Cited by: 24
Author(s): Gerald A. Higgins, Patrick E. Georgoff, Vahagn C. Nikolian, Ari Allyn-Feuer, Brian Pauls, Richard Higgins, Hasan E. Alam
Software Mentions: 1
Published: over 9 years ago

10.1098/rstb.2009.0219

Genome-wide scans for footprints of natural selection
Cited by: 294
Author(s): Tarás K. Oleksyk, Michael W. Smith, Stephen J. O’Brien
Software Mentions: 1
Published: over 16 years ago

10.1098/rstb.2020.0157

MolluscDB: a genome and transcriptome database for molluscs
Cited by: 13
Author(s): Carlos Caurcel, Dominik R. Laetsch, Richard Challis, Sujai Kumar, Karim Gharbi, Mark Blaxter
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.10312

Evolutionary analysis of chloroplast tRNA of Gymnosperm revealed the novel structural variation and evolutionary aspect
Cited by: 4
Author(s): Tingting Zhang, Yi-Kun Hou, Ting Yang, Shu-Ya Zhang, Ming Yue, Jianni Liu, Zhong-Hu Li
Software Mentions: 1
Published: almost 6 years ago

10.1111/pbi.13014

Molecular tools enabling pennycress (Thlaspi arvense) as a model plant and oilseed cash cover crop
Cited by: 70
Author(s): Michaela McGinn, Winthrop B. Phippen, Ratan Chopra, Sunil Bansal, Brice A. Jarvis, Mary E. Phippen, Kevin M. Dorn, Maliheh Esfahanian, Tara J. Nazarenus, Edgar B. Cahoon, Timothy P. Durrett, M. David Marks, John C. Sedbrook
Software Mentions: 1
Published: almost 8 years ago

10.3390/proteomes5030014

Comparison between Proteome and Transcriptome Response in Potato (Solanum tuberosum L.) Leaves Following Potato Virus Y (PVY) Infection
Cited by: 32
Author(s): Tjaša Stare, Katja Stare, Wolfram Weckwerth, Stefanie Wienkoop, Kristina Gruden
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-018-4886-4

H4K20me3 co-localizes with activating histone modifications at transcriptionally dynamic regions in embryonic stem cells
Cited by: 22
Author(s): Jian Xu, Benjamin L. Kidder
Software Mentions: 1
Published: about 8 years ago

10.1007/s00299-014-1666-8

OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice
Cited by: 49
Author(s): Lina Wu, Yusheng Guan, Zigang Wu, Kun Yang, Jun Lv, Richard Converse, Huang Yuanxin, Jin-Xiong MaoJ. Mao, Yong Zhao, Zhongwei Wang, Min HengQi, Dongyang Kan, Yi Zhang
Software Mentions: 1
Published: about 12 years ago

10.1002/pld3.8

CoGe LoadExp+: A web‐based suite that integrates next‐generation sequencing data analysis workflows and visualization
Cited by: 20
Author(s): Jeffrey W. Grover, Matthew Bomhoff, Sean Davey, Brian D. Gregory, Rebecca A. Mosher, Eric Lyons
Software Mentions: 1
Published: about 9 years ago

10.7717/peerj.639

Associating disease-related genetic variants in intergenic regions to the genes they impact
Cited by: 22
Author(s): Geoff Macintyre, Antonio Jimeno-Yepes, Cheng Soon Ong, Karin Verspoor
Software Mentions: 1
Published: almost 12 years ago

10.7717/peerj.7558

The sugarcane mitochondrial genome: assembly, phylogenetics and transcriptomics
Cited by: 13
Author(s): Dyfed Lloyd Evans, Thandekile Thandiwe Hlongwane, Suvarna Joshi, Diego Mauricio Riaño-Pachón
Software Mentions: 1
Published: almost 7 years ago

10.1080/15476286.2020.1744320

LARP1 isoform expression in human cancer cell lines
Cited by: 9
Author(s): Hagen Schwenzer, Mai Abdel Mouti, Pia Neubert, Josephine Morris, Joanne Stockton, Sarah Bonham, Martin Fellermeyer, James Chettle, Román Fischer, Andrew D Beggs, Sarah P. Blagden
Software Mentions: 1
Published: over 6 years ago

10.3390/pathogens10050552

Occurrence of Legionella spp. in Man-Made Water Sources: Isolates Distribution and Phylogenetic Characterization in the Emilia-Romagna Region
Cited by: 9
Author(s): Marta Mazzotta, Silvano Salaris, Maria Rosaria Pascale, Luna Girolamini, Sandra Cristino
Software Mentions: 1
Published: over 5 years ago

10.1098/rsos.191976

On the relations of phase separation and Hi-C maps to epigenetics
Cited by: 16
Author(s): Prim B. Singh, Andrew G. Newman
Software Mentions: 1
Published: over 6 years ago

10.1186/s40851-017-0071-x

An efficient system for homology-dependent targeted gene integration in medaka (Oryzias latipes)
Cited by: 29
Author(s): Yu Murakami, Satoshi Ansai, Akari Yonemura, Masato Kinoshita
Software Mentions: 1
Published: about 9 years ago

10.3390/plants8100406

The Plant NF-Y DNA Matrix In Vitro and In Vivo
Cited by: 6
Author(s): Nerina Gnesutta, Matteo Chiara, Andrea Bernardini, Matteo Balestra, David S. Horner, Roberto Mantovani
Software Mentions: 1
Published: almost 7 years ago

10.3897/zookeys.150.2248

Data standards, sense and stability: Scratchpads, the ICZN and ZooBank
Cited by: 0
Author(s): Edward Baker, Ellinor Michel
Software Mentions: 1
Published: over 14 years ago

10.12688/wellcomeopenres.15126.2

Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes Project
Cited by: 62
Author(s): Ernesto Lowy-Gallego, Susan Fairley, Xiangqun Zheng-Bradley, Magali Ruffier, Laura Clarke, Paul Flicek
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3000684

Precise genomic mapping of 5-hydroxymethylcytosine via covalent tether-directed sequencing
Cited by: 12
Author(s): Povilas Gibas, Milda Narmontė, Zdislav Staševskij, Juozas Gordevičius, Saulius Klimašauskas, Edita Kriukienė
Software Mentions: 1
Published: over 6 years ago

10.1186/s42492-019-0040-7

Painting image browser applying an associate-rule-aware multidimensional data visualization technique
Cited by: 3
Author(s): Ayaka Kaneko, Akiko Komatsu, Takayuki Itoh, Florence Ying Wang
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3001045

Signatures of host–pathogen evolutionary conflict reveal MISTR—A conserved MItochondrial STress Response network
Cited by: 17
Author(s): Mahsa Sorouri, Tyron Chang, Palmy R. Jesudhasan, Chelsea Pinkham, Nels C. Elde, Dustin C. Hancks
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.2003067

Spliced integrated retrotransposed element (SpIRE) formation in the human genome
Cited by: 10
Author(s): Peter A. Larson, John B. Moldovan, Naveen Jasti, Jeffrey M. Kidd, Christine R. Beck, John V. Moran
Software Mentions: 1
Published: over 8 years ago

10.3390/v9080210

Viral Ubiquitin Ligase Stimulates Selective Host MicroRNA Expression by Targeting ZEB Transcriptional Repressors
Cited by: 13
Author(s): Gabriel Lutz, Igor Jurak, Eui‐Tae Kim, Ju Youn Kim, Michael Hackenberg, Andrew M. Leader, Michelle L. Stoller, Donna M. Fekete, Matthew D. Weitzman, Donald M. Coen, Angus C. Wilson
Software Mentions: 1
Published: about 9 years ago

10.3390/v9040080

Protein-Coding Genes’ Retrocopies and Their Functions
Cited by: 56
Author(s): Magdalena Regina Kubiak, Izabela Makałowska
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pbio.1001890

A Novel Nodal Enhancer Dependent on Pluripotency Factors and Smad2/3 Signaling Conditions a Regulatory Switch During Epiblast Maturation
Cited by: 42
Author(s): Costis Papanayotou, Ataaillah Benhaddou, Anne Camus, Aitana Perea-Gómez, Alice Jouneau, Valérie Mezger, Francina Langa, Sascha Ott, Délara Sabéran‐Djoneidi, Jérôme Collignon
Software Mentions: 1
Published: about 12 years ago

10.3390/v5030998

Discovering Host Genes Involved in the Infection by the Tomato Yellow Leaf Curl Virus Complex and in the Establishment of Resistance to the Virus Using Tobacco Rattle Virus-based Post Transcriptional Gene Silencing
Cited by: 37
Author(s): Henryk Czosnek, Assaf Eybishtz, Dagan Sade, Rena Gorovits, Iris Sobol, Eduardo R. Bejarano, Tábata Rosas-Díaz, Rosa Lozano‐Durán
Software Mentions: 1
Published: over 13 years ago

10.1016/j.virol.2015.10.026

Rabbit CD200R binds host CD200 but not CD200-like proteins from poxviruses
Cited by: 10
Author(s): Munir Akkaya, L.S. Kwong, Erdem Akkaya, Deborah Hatherley, A. Neil Barclay
Software Mentions: 1
Published: over 10 years ago

10.1186/s12985-018-0922-x

MicroRNA transcriptome analysis of porcine vital organ responses to immunosuppressive porcine cytomegalovirus infection
Cited by: 7
Author(s): Xiao Liu, Haoche Wei, Shan Liao, Jian‐Heng Ye, Ling Zhu, Zhinan Xu
Software Mentions: 1
Published: over 8 years ago

10.1186/1477-7827-12-76

Androgenic regulation of beta-defensins in the mouse epididymis
Cited by: 30
Author(s): Shuang Gang Hu, Man Zou, Guang Xin Yao, Bin Wu, Qin Zhu, Xiang Qi Li, Zi‐Jiang Chen, Yun Sun
Software Mentions: 1
Published: about 12 years ago

10.1186/1743-422X-10-73

Cellular phosphoinositides and the maturation of bluetongue virus, a non-enveloped capsid virus
Cited by: 10
Author(s): Bishnupriya Bhattacharya, Polly Roy
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pbio.2005595

Heterochromatin delays CRISPR-Cas9 mutagenesis but does not influence the outcome of mutagenic DNA repair
Cited by: 71
Author(s): Eirini M. Kallimasioti-Pazi, Keerthi Thelakkad Chathoth, Gillian C.A. Taylor, Alison Meynert, Tracy Ballinger, Martijn J. E. Kelder, Sébastien Lalevée, Ildem Sanli, Robert Feil, Andrew J. Wood
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1000988

Systematic Inference of Copy-Number Genotypes from Personal Genome Sequencing Data Reveals Extensive Olfactory Receptor Gene Content Diversity
Cited by: 58
Author(s): Sebastian M. Waszak, Yehudit Hasin, Thomas Zichner, Tsviya Olender, Ifat Keydar, Miriam Khen, Adrian M. Stütz, Andreas Schlattl, Doron Lancet, Jan O. Korbel
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pcbi.1003951

The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data
Cited by: 24
Author(s): Norman E. Davey, Venkata Satagopam, Salvador Santiago-Mozos, Carlos Villacorta-Martín, Tanmay A. M. Bharat, Reinhard Schneider, John Briggs
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-020-6688-8

Discovering candidate imprinted genes and imprinting control regions in the human genome
Cited by: 4
Author(s): Minou Bina
Software Mentions: 1
Published: about 6 years ago

10.3390/nu5051706

Genome-Wide Association Study of Serum Selenium Concentrations
Cited by: 9
Author(s): Jian Gong, Li Hsu, Tabitha A. Harrison, Irena B. King, Stefan Stürup, Xiaoling Song, David Duggan, Yan Liu, Carolyn M. Hutter, Stephen J. Chanock, Charles B. Eaton, James R. Marshall, Ulrike Peters
Software Mentions: 1
Published: over 13 years ago

10.1186/s12931-016-0493-6

Gene profile of fibroblasts identify relation of CCL8 with idiopathic pulmonary fibrosis
Cited by: 33
Author(s): Jong-Uk Lee, Hyun Sub Cheong, Eun-Hee Shim, Da-Jeong Bae, Hun Soo Chang, Soo‐Taek Uh, Young Hoon Kim, Jong‐Sook Park, Bora Lee, Hyoung Doo Shin, Choon-Sik Park
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pcbi.1001020

Assessing Computational Methods of Cis-Regulatory Module Prediction
Cited by: 69
Author(s): Jing Su, Sarah A. Teichmann, Thomas A. Down
Software Mentions: 1
Published: over 15 years ago

10.1186/1742-4690-10-156

Differential inhibition of LINE1 and LINE2 retrotransposition by vertebrate AID/APOBEC proteins
Cited by: 24
Author(s): Nataša Lindič, Maruška Budič, Toni Petan, Binyamin A. Knisbacher, Erez Y. Levanon, Nika Lovšin
Software Mentions: 1
Published: over 12 years ago

Projects: pypi: browser

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Papers Mentioning browser 2,125