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10.1186/s13059-018-1544-8

Reconstruction of avian ancestral karyotypes reveals differences in the evolutionary history of macro- and microchromosomes
Cited by: 40
Author(s): Joana Damas, Jaebum Kim, Marta Farré, Darren K. Griffin, Denis M. Larkin
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13059-019-1889-7

Chromosome-level genome assembly for giant panda provides novel insights into Carnivora chromosome evolution
Cited by: 28
Author(s): Huizhong Fan, Qi Wu, Fuwen Wei, Fengtang Yang, Bee Ling Ng, Yibo Hu
Software Mentions: 1
Published: over 6 years ago

10.1186/s13059-019-1897-7

PASTMUS: mapping functional elements at single amino acid resolution in human cells
Cited by: 6
Author(s): Xinyi Zhang, Di Yue, Yinan Wang, Yan Zhou, Ying Liu, Yu Qiu, Feng Tian, Ying Yu, Zhuo Zhou, Wensheng Wei
Software Mentions: 1
Published: over 6 years ago

10.1186/s13059-020-02017-z

ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data
Cited by: 91
Author(s): Egor Dolzhenko, Mark F Bennett, Phillip A. Richmond, Brett Trost, Sai Chen, Joke J.F.A. van Vugt, Charlotte Nguyen, Giuseppe Narzisi, Vladimir G. Gainullin, Andrew M. Gross, Bryan R. Lajoie, Ryan J. Taft, Wyeth W. Wasserman, Stephen W. Scherer, Jan H. Veldink, David Bentley, Ryan K. C. Yuen, Melanie Bahlo, Michael A. Eberle
Software Mentions: 1
Published: over 6 years ago

10.1186/s13059-020-02184-z

Deep sequencing reveals a DAP1 regulatory haplotype that potentiates autoimmunity in systemic lupus erythematosus
Cited by: 7
Author(s): Prithvi Raj, Ran Song, Honglin Zhu, Linley Riediger, Dong Jae Jun, Chao Liang, Carlos Arana, Bo Zhang, Yajing Gao, Benjamin Wakeland, Igor Dozmorov, Jianuan Zhou, Jennifer A. Kelly, Bernard Lauwerys, Joel M. Guthridge, Nancy J. Olsen, Swapan K. Nath, Chandrashekhar Pasare, Nicolai S. C. van Oers, Gary S. Gilkeson, Betty P. Tsao, Patrick M. Gaffney, Peter K. Gregersen, Judith A. James, Xiaoxia Zuo, David R. Karp, Quan Zhen Li, Edward K. Wakeland
Software Mentions: 1
Published: almost 6 years ago

10.1093/gbe/evu139

The Draft Assembly of the Radically Organized Stylonychia lemnae Macronuclear Genome
Cited by: 54
Author(s): Samuel H. Aeschlimann, Franziska Jönsson, Jan Postberg, Nicholas A. Stover, Robert L. Petera, Hans-Joachim Lipps, Mariusz Nowacki, Estienne C. Swart
Software Mentions: 1
Published: about 12 years ago

10.1093/gbe/evv012

The Role of DNA Insertions in Phenotypic Differentiation between Humans and Other Primates
Cited by: 4
Author(s): Elizabeth Hellen, Andrew D. Kern
Software Mentions: 1
Published: over 11 years ago

10.1093/gbe/evv142

A Genome-Wide Landscape of Retrocopies in Primate Genomes
Cited by: 44
Author(s): Fábio C. P. Navarro, Pedro A. F. Galante
Software Mentions: 1
Published: about 11 years ago

10.1093/gbe/evv161

Comparative Genomics of Environmental and ClinicalStenotrophomonas maltophiliaStrains with Different Antibiotic Resistance Profiles
Cited by: 72
Author(s): Benjamin Youenou, Sabine Favre-Bonté, Josselin Bodilis, Elisabeth Brothier, Audrey Dubost, Daniel Müller, Sylvie Nazaret
Software Mentions: 1
Published: about 11 years ago

10.1093/gbe/evx237

The Diversity of REcent and Ancient huMan (DREAM): A New Microarray for Genetic Anthropology and Genealogy, Forensics, and Personalized Medicine
Cited by: 9
Author(s): Eran Elhaik, Leeban Yusuf, Ainan I J Anderson, Mehdi Pirooznia, Dimitrios Arnellos, Gregory Vilshansky, Gunes Ercal, Yontao Lu, Teresa A. Webster, Michael L. Baird, Umberto Esposito
Software Mentions: 1
Published: almost 9 years ago

10.1093/gbe/evy199

Turning Vice into Virtue: Using Batch-Effects to Detect Errors in Large Genomic Data Sets
Cited by: 7
Author(s): Fabrizio Mafessoni, Rashmi B. Prasad, Leif Groop, Ola Hansson, Kay Prüfer
Software Mentions: 1
Published: almost 8 years ago

10.1093/gbe/evz228

A Nearly Complete Genome of Ciona intestinalis Type A (C. robusta) Reveals the Contribution of Inversion to Chromosomal Evolution in the Genus Ciona
Cited by: 69
Author(s): Yutaka Satou, Ryohei Nakamura, Dejie Yu, Reiko Yoshida, Mayuko Hamada, Manabu Fujie, Kanako Hisata, Hiroyuki Takeda, Noriyuki Satoh
Software Mentions: 1
Published: almost 7 years ago

10.1093/gbe/evz254

Genome Assembly of the Dogface Butterfly Zerene cesonia
Cited by: 7
Author(s): Luis Rodriguez-Caro, Jennifer Fenner, Caleb Benson, Steven M. Van Belleghem, Brian A. Counterman
Software Mentions: 1
Published: almost 7 years ago

10.1093/gbe/evaa045

Weak Correlation between Nucleotide Variation and Recombination Rate across the House Mouse Genome
Cited by: 9
Author(s): Michael Emmett Kartje, Peicheng Jing, Bret A. Payseur
Software Mentions: 1
Published: over 6 years ago

10.1186/2041-9414-2-6

Assessment of genome integrity with array CGH in cattle transgenic cell lines produced by homologous recombination and somatic cell cloning
Cited by: 7
Author(s): George E. Liu, Yali Hou, James M. Robl, Yoshimi Kuroiwa, Zhongde Wang
Software Mentions: 1
Published: over 15 years ago

10.1186/gm137

Collaboratively charting the gene-to-phenotype network of human congenital heart defects
Cited by: 28
Author(s): Roland Barriot, Jeroen Breckpot, Bernard Thienpont, Sylvain Brohée, Steven Van Vooren, Bert Coessens, Léon-Charles Tranchevent, Peter Van Loo, Marc Gewillig, Koenraad Devriendt, Yves Moreau
Software Mentions: 1
Published: over 16 years ago

10.1186/s13073-017-0427-z

PathOS: a decision support system for reporting high throughput sequencing of cancers in clinical diagnostic laboratories
Cited by: 24
Author(s): Kenneth D. Doig, Andrew Fellowes, Anthony Bell, Andrei Seleznev, Dávid Ma, Jason Ellul, Jason Li, Maria A. Doyle, Ella R. Thompson, Amit Kumar, Luis F. Lara, Ravikiran Vedururu, Gareth Reid, Thomas Conway, Anthony T. Papenfuss, Stephen B. Fox
Software Mentions: 1
Published: over 9 years ago

10.1186/s13073-017-0453-x

Identification and characterization of a FOXA2-regulated transcriptional enhancer at a type 2 diabetes intronic locus that controls GCKR expression in liver cells
Cited by: 20
Author(s): Maykel López Rodríguez, Dorota Kaminska, Kati Lappalainen, Jussi Pihlajamäki, Minna U. Kaikkonen, Markku Laakso
Software Mentions: 1
Published: about 9 years ago

10.1016/j.ygeno.2009.10.004

Genome-wide end-sequenced BAC resources for the NOD/MrkTac☆ and NOD/ShiLtJ☆☆ mouse genomes
Cited by: 15
Author(s): Charles A. Steward, Sean Humphray, Bob Plumb, Matthew C. Jones, Michael A. Quail, Stephen V. Rice, Tony Cox, Robert M. Davies, James K. Bonfield, Thomas M. Keane, Michael Nefedov, Pieter J. de Jong, Paul Lyons, Linda S. Wicker, John A. Todd, Yoshihide Hayashizaki, Omid M. Gulban, Jayne S. Danska, Jennifer Harrow, Tim Hubbard, Jane Rogers, David J. Adams
Software Mentions: 1
Published: over 16 years ago

10.1016/j.gpb.2019.03.006

Tung Tree (Vernicia fordii) Genome Provides A Resource for Understanding Genome Evolution and Improved Oil Production
Cited by: 34
Author(s): Lin Zhang, Meilan Liu, Hongxu Long, Wei Dong, Asher Pasha, Eddi Esteban, Wenying Li, Xiaoming Yang, Ze Li, Aixia Song, Duo Ran, Guang Zhao, Yanwei Zeng, Hao Chen, Ming Zou, Jingjing Li, Fan Liang, Meili Xie, Jiang Hu, Depeng Wang, Heping Cao, Nicholas J. Provart, Liangsheng Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/2047-217X-3-13

Annotated features of domestic cat – Felis catus genome
Cited by: 30
Author(s): Gaik Tamazian, Serguei Simonov, Pavel Dobrynin, Alex Makunin, Anton Logachev, Aleksey Komissarov, Andrey Shevchenko, Vladimir Brukhin, Nikolay Cherkasov, Anton Svitin, Klaus‐Peter Koepfli, Joan Pontius, Carlos A. Driscoll, Kevin Blackistone, Cristina Barr, David Goldman, Agostinho Antunes, Javier Quilez, Belén Lorente-Galdós, Can Alkan, Tomàs Marquès‐Bonet, Marylin Menotti-Raymond, Victor A. David, Kristina Narfström, Stephen J. O’Brien
Software Mentions: 1
Published: about 12 years ago

10.1093/gigascience/gix085

De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads
Cited by: 150
Author(s): Jonas Korlach, Gregory Gedman, Sarah B. Kingan, Chen-Shan Chin, Jason T. Howard, Josée Audet, Lindsey J. Cantin, Erich D. Jarvis
Software Mentions: 1
Published: almost 9 years ago

10.1093/gigascience/giaa018

Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism
Cited by: 10
Author(s): Jin Zhang, Rongbin Hu, Avinash Sreedasyam, Travis M. Garcia, Anna Lipzen, Mei Wang, Pradeep Yerramsetty, Degao Liu, Vivian Ng, Jeremy Schmutz, John C. Cushman, Anne M. Borland, Asher Pasha, Nicholas J. Provart, Jay Chen, Wellington Muchero, Gerald A. Tuskan, Xiaohan Yang
Software Mentions: 1
Published: over 6 years ago

10.1016/j.heliyon.2018.e00647

Comparative genomic analysis of eutherian adiponectin genes
Cited by: 4
Author(s): Marko Premzl
Software Mentions: 1
Published: about 8 years ago

10.1186/s13053-017-0082-9

Exome sequencing characterizes the somatic mutation spectrum of early serrated lesions in a patient with serrated polyposis syndrome (SPS)
Cited by: 6
Author(s): Sukanya Horpaopan, Jutta Kirfel, Sophia Peters, Michael Kloth, Robert Hüneburg, Janine Altmüller, Dmitriy Drichel, Margarete Odenthal, Glen Kristiansen, Christian Strassburg, Jacob Nattermann, Per Hoffmann, Peter Nürnberg, Reinhard Büttner, Holger Thiele, Philip Kahl, Isabel Spier, Stefan Aretz
Software Mentions: 1
Published: over 8 years ago

10.1186/s41065-016-0022-0

Psychomotor retardation with a 1q42.11–q42.12 deletion
Cited by: 4
Author(s): Jialing He, Yuan Xie, Shu Kong, Wenjun Qiu, Xiaoman Wang, Ding Wang, Xiaofang Sun, Deming Sun
Software Mentions: 1
Published: over 9 years ago

10.1038/s41439-020-00127-5

A reference catalog of DNA palindromes in the human genome and their variations in 1000 Genomes
Cited by: 10
Author(s): Madhavi K. Ganapathiraju, Sandeep Subramanian, Srilakshmi Chaparala, Kalyani B. Karunakaran
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12979-015-0045-9

Decline of FOXN1 gene expression in human thymus correlates with age: possible epigenetic regulation
Cited by: 21
Author(s): Marlon M. Reis, Krisztián Csomós, Luciene Paschoal Braga Dias, Zsolt Prodán, Tamás Szerafin, Wilson Savino, László Takács
Software Mentions: 1
Published: almost 11 years ago

10.1111/j.1365-2583.2006.00679.x

Nuclear receptors of the honey bee: annotation and expression in the adult brain
Cited by: 72
Author(s): Rodrigo Velarde, Gene E. Robinson, Susan E. Fahrbach
Software Mentions: 1
Published: almost 20 years ago

10.1155/2021/3064224

The Genetic Research in Alzheimer Disease (GERALD) Initiative Finds rs9320913 as a Neural eQTL of lincRNA AL589740.1
Cited by: 1
Author(s): Lidia Lopez-Gutierrez, José María García‐Alberca, Silvia Mendoza, Esther Gris, María Paz De la Guía, José Manuel Marín-Carmona, Emilio Alarcón‐Martín, Almudena Lobato, José Manuel Cruz‐Gamero, Laura Cura, Olga Ocejo, Javier Torrecilla, María Dolores Nieto, Concepción Urbano, Nuria Pareja, Macarena Luque, María García-Peralta, Rosario Carrillejo, José Luis Royo
Software Mentions: 1
Published: almost 5 years ago

10.1001/jamanetworkopen.2021.16839

Genetic Variants Associated With Intraparenchymal Hemorrhage Progression After Traumatic Brain Injury
Cited by: 11
Author(s): Ruchira M. Jha, Benjamin Zusman, Ava M. Puccio, David O. Okonkwo, Matthew Pease, Shashvat M Desai, Matthew R Leach, Yvette P. Conley, Patrick M. Kochanek
Software Mentions: 1
Published: about 5 years ago

10.1186/2040-2384-2-15

Fine mapping of the hereditary haemorrhagic telangiectasia (HHT)3 locus on chromosome 5 excludes VE-Cadherin-2, Sprouty4 and other interval genes
Cited by: 17
Author(s): Fatima S Govani, CL Shovlin
Software Mentions: 1
Published: over 16 years ago

10.1007/s10815-016-0795-0

Isolation and expression of the human gametocyte-specific factor 1 gene (GTSF1) in fetal ovary, oocytes, and preimplantation embryos
Cited by: 9
Author(s): John Huntriss, Jianping Lu, Karen Hemmings, Rosemary A. L. Bayne, Richard A. Anderson, Anthony J. Rutherford, Adam Balen, Kay Elder, Helen M. Picton
Software Mentions: 1
Published: almost 10 years ago

10.1007/s10815-021-02104-5

Cell-based non-invasive prenatal testing for monogenic disorders: confirmation of unaffected fetuses following preimplantation genetic testing
Cited by: 6
Author(s): Christian Liebst Frisk Toft, Hans Jakob Ingerslev, Ulrik Schiøler Kesmodel, Lotte Hatt, Ripudaman Singh, Katarina Ravn, Bolette Hestbek Nicolaisen, Inga Baasch Christensen, Mathias Kølvraa, Line Dahl Jeppesen, Palle Schelde, Ida Vogel, Niels Uldbjerg, Richard Farlie, Steffen Sommer, Marianne Louise Vang Østergård, Ann Nygaard Jensen, Helle Smidt Mogensen, Kristín Rós Kjartansdóttir, Birte Degn, Henrik Okkels, Anja Ernst, Inge Søkilde Pedersen
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.M112.414367

Human and Viral Golgi Anti-apoptotic Proteins (GAAPs) Oligomerize via Different Mechanisms and Monomeric GAAP Inhibits Apoptosis and Modulates Calcium
Cited by: 32
Author(s): Nuno Saraiva, David L. Prole, Guia Carrara, Carlos Maluquer de Motes, Benjamin F. Johnson, Bernadette Byrne, Colin W. Taylor, Geoffrey L. Smith
Software Mentions: 1
Published: over 13 years ago

10.1074/jbc.M115.700856

Entry of Bluetongue Virus Capsid Requires the Late Endosome-specific Lipid Lysobisphosphatidic Acid
Cited by: 26
Author(s): Avnish Patel, Bjorn-Patrick Mohl, Polly Roy
Software Mentions: 1
Published: about 10 years ago

10.1016/j.jbc.2021.100704

Sp1 is a substrate of Keap1 and regulates the activity of CRL4AWDR23 ubiquitin ligase toward Nrf2
Cited by: 9
Author(s): Ferbian Milas Siswanto, Ami Oguro, Shingi Imaoka
Software Mentions: 1
Published: over 5 years ago

10.1016/j.jbc.2021.100697

Loss of Down syndrome critical region-1 leads to cholesterol metabolic dysfunction that exaggerates hypercholesterolemia in ApoE-null background
Cited by: 1
Author(s): Masashi Matsushima, Tsuyoshi Osawa, Yuri Miyamura, Suguru Nakagawa, Toshiya Tanaka, Tatsuhiko Kodama, Hiroyuki Aburatani, Juro Sakai, Sandra Ryeom, Takashi Minami
Software Mentions: 1
Published: over 5 years ago

10.1186/s12929-015-0123-5

Evaluation of Neurotrophic Tyrosine Receptor Kinase 2 (NTRK2) as a positional candidate gene for variation in estimated Glomerular Filtration Rate (eGFR) in Mexican American participants of San Antonio Family Heart Study
Cited by: 4
Author(s): Farook Thameem, V. Saroja Voruganti, John Blangero, Anthony G. Comuzzie, Hanna E. Abboud
Software Mentions: 1
Published: over 11 years ago

10.1186/s13326-015-0030-4

Improving the Sequence Ontology terminology for genomic variant annotation
Cited by: 23
Author(s): Fiona Cunningham, Barry Moore, Nicole Ruiz-Schultz, Graham R. S. Ritchie, Karen Eilbeck
Software Mentions: 1
Published: about 11 years ago

10.1186/s13326-021-00250-4

CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature
Cited by: 7
Author(s): Anthony Huffman, Anna Maria Masci, Jie Zheng, Nasim Sanati, Timothy Brunson, Guanming Wu, Yongqun He
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00432-021-03519-4

Comprehensive analysis of regulation of DNA methyltransferase isoforms in human breast tumors
Cited by: 18
Author(s): Mangala Hegde, Manjunath B. Joshi
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.16694

Interplay between SARS‐CoV‐2‐derived miRNAs, immune system, vitamin D pathway and respiratory system
Cited by: 6
Author(s): Elham Karimi, Hanieh Azari, Maryam Yari, Ahmad Tahmasebi, Mehdi Hassani Azad, Pegah Mousavi
Software Mentions: 1
Published: about 5 years ago

10.1186/2043-9113-4-5

FISH Oracle 2: a web server for integrative visualization of genomic data in cancer research
Cited by: 5
Author(s): Malte Mäder, Ronald Simon, Stefan Kurtz
Software Mentions: 1
Published: over 12 years ago

10.1186/2043-9113-5-S1-S6

The Integrated Data Repository Toolkit (IDRT): accelerating translational research infrastructures
Cited by: 5
Author(s): Christian R. Bauer, Thomas Ganslandt, Benjamin Baum, Jan Christoph, Igor Engel, Matthias Löbe, Sebastian Mate, Hans‐Ulrich Prokosch, Ulrich Sax, Sebastian Stäubert, Alfred Winter
Software Mentions: 1
Published: over 11 years ago

10.3390/jcm7020026

Effect of MUC8 on Airway Inflammation: A Friend or a Foe?
Cited by: 6
Author(s): Hee‐Jae Cha, Kyoung Seob Song
Software Mentions: 1
Published: over 8 years ago

10.3390/jcm9030625

A New Risk Variant for Multiple Sclerosis at 11q23.3 Locus Is Associated with Expansion of CXCR5+ Circulating Regulatory T Cells
Cited by: 5
Author(s): Elia Gil‐Varea, Marı́a Fedetz, Herena Eixarch, Nino Spataro, Luisa María Villar, Elena Urcelay, Albert Sáiz, Óscar Fernández, Laura Leyva, Lluı́s Ramió-Torrentà, Koen Vandenbroeck, David Otaegui, Tamara Castillo-Triviño, Guillermo Izquierdo, Sunny Malhotra, Elena Bosch, Arcadi Navarro, Antonio Alcina, Xavier Montalbán, Fuencisla Matesanz, Manuel Comabella
Software Mentions: 1
Published: over 6 years ago

10.1093/jxb/erw015

Natural variation in rosette size under salt stress conditions corresponds to developmental differences between Arabidopsis accessions and allelic variation in theLRR-KISSgene
Cited by: 57
Author(s): Magdalena Julkowska, Karlijn Klei, Like Fokkens, Michel A. Haring, M. Eric Schranz, Christa Testerink
Software Mentions: 1
Published: over 10 years ago

10.1093/jxb/erw358

PgLOX6encoding a lipoxygenase contributes to jasmonic acid biosynthesis and ginsenoside production inPanax ginseng
Cited by: 25
Author(s): Shadi Rahimi, Yujin Kim, Dabing Zhang, Deok-Chun Yang
Software Mentions: 1
Published: almost 10 years ago

10.1093/jxb/erx014

Kiwifruit SVP2 gene prevents premature budbreak during dormancy
Cited by: 54
Author(s): Rui Wu, Tianchi Wang, Ben Warren, Andrew C. Allan, Richard C. Macknight, Erika Varkonyi‐Gasic
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/erw463

Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data
Cited by: 23
Author(s): Alisandra K. Denton, Janina Maß, Canan Külahoglu, Martin J. Lercher, Andrea Bräutigam, Andreas P.M. Weber
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/ery076

BIFURCATE FLOWER TRUSS: a novel locus controlling inflorescence branching in tomato contains a defective MAP kinase gene
Cited by: 3
Author(s): Demetryus Silva Ferreira, Zoltán Kevei, Tomasz J. Kurowski, Maria Esther de Noronha Fonseca, Fady Mohareb, L. S. Boiteux, Andrew J. Thompson
Software Mentions: 1
Published: over 8 years ago

10.1093/jxb/erab238

Sphingolipid Δ4-desaturation is an important metabolic step for glycosylceramide formation in Physcomitrium patens
Cited by: 3
Author(s): Jasmin Gömann, Cornelia Herrfurth, Krzysztof Zienkiewicz, Tegan M. Haslam, Ivo Feußner
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.ppat.1001046

Kaposin-B Enhances the PROX1 mRNA Stability during Lymphatic Reprogramming of Vascular Endothelial Cells by Kaposi's Sarcoma Herpes Virus
Cited by: 57
Author(s): Jae Gyu Yoo, Jeehoon Kang, Ha Neul Lee, Berenice Aguilar, Kafka Darren, Sun-Ju Lee, Inho Choi, Juneyong Lee, Swapnika Ramu, Juergen Haas, Chester J. Koh, Young Kwon Hong
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.ppat.1003066

TgCDPK3 Regulates Calcium-Dependent Egress of Toxoplasma gondii from Host Cells
Cited by: 126
Author(s): John J. McCoy, Lachlan Whitehead, Giel G. van Dooren, Christopher J. Tonkin
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.ppat.1003475

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites
Cited by: 390
Author(s): Philipp Wiemann, Christian M. K. Sieber, Katharina Walburga von Bargen, Lena Studt, Eva Maria Niehaus, José J. Espino, Kathleen Huß, Caroline B. Michielse, Sabine Albermann, Dominik Wagner, Sonja Verena Bergner, Lanelle Connolly, Andreas Fischer, Günter Reuter, Karin Kleigrewe, Till Bald, Brenda D. Wingfield, Ron Ophir, Stanley Freeman, Michael Hippler, Kristina M. Smith, Daren W. Brown, Robert H. Proctor, Martin Münsterkötter, Michael Freitag, Hans‐Ulrich Humpf, Ulrich Güldener, Bettina Tudzynski
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.ppat.1005031

Epstein-Barr Virus Proteins EBNA3A and EBNA3C Together Induce Expression of the Oncogenic MicroRNA Cluster miR-221/miR-222 and Ablate Expression of Its Target p57KIP2
Cited by: 34
Author(s): Quentin Bazot, Kostas Paschos, Lenka Skalska, Jens Kalchschmidt, Gillian A. Parker, Martin J. Allday
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1005383

EBNA3C Directs Recruitment of RBPJ (CBF1) to Chromatin during the Process of Gene Repression in EBV Infected B Cells
Cited by: 22
Author(s): Jens Kalchschmidt, Adam C. T. Gillman, Kostas Paschos, Quentin Bazot, Bettina Kempkes, Martin J. Allday
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.ppat.1006677

KSHV inhibits stress granule formation by viral ORF57 blocking PKR activation
Cited by: 52
Author(s): Nisha Sharma, Vladimır Majerčiak, Michael J. Kruhlak, Zhi-Ming Zheng
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1006820

Activation of PI3K, Akt, and ERK during early rotavirus infection leads to V-ATPase-dependent endosomal acidification required for uncoating
Cited by: 39
Author(s): Mahmoud Soliman, Ja-Young Seo, Deok-Song Kim, Jiyun Kim, Jun-Gyu Park, Mia Madel Alfajaro, Yeong-Bin Baek, Eun-Hyo Cho, Joseph Kwon, Jong‐Soon Choi, Mun-Il Kang, Sang-Ik Park, Kyoung-Oh Cho
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1006919

Addition of m6A to SV40 late mRNAs enhances viral structural gene expression and replication
Cited by: 108
Author(s): Kevin Tsai, David Courtney, Bryan R. Cullen
Software Mentions: 1
Published: over 8 years ago

10.1155/2007/26839

Comprehensive Analysis of PPAR<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="E1"><mml:mi>α</mml:mi></mml:math>-Dependent Regulation of Hepatic Lipid Metabolism by Expression Profiling
Cited by: 185
Author(s): Maryam Rakhshandehroo, Linda M. Sanderson, Merja Matilainen, Rinke Stienstra, Carsten Carlberg, Philip J. de Groot, Michael Müller, Sander Kersten
Software Mentions: 1
Published: over 19 years ago

10.1073/pnas.1909973116

An inhibitor of complement C5 provides structural insights into activation
Cited by: 23
Author(s): Martin Parnov Reichhardt, Steven Johnson, Terence Tang, Thomas J. Morgan, Nchimunya N. Tebeka, Niko Popitsch, Justin C. Deme, Matthijs M. Jore, Susan M. Lea
Software Mentions: 1
Published: over 6 years ago

10.3390/proteomes5030014

Comparison between Proteome and Transcriptome Response in Potato (Solanum tuberosum L.) Leaves Following Potato Virus Y (PVY) Infection
Cited by: 32
Author(s): Tjaša Stare, Katja Stare, Wolfram Weckwerth, Stefanie Wienkoop, Kristina Gruden
Software Mentions: 1
Published: about 9 years ago

10.1080/15476286.2020.1744320

LARP1 isoform expression in human cancer cell lines
Cited by: 9
Author(s): Hagen Schwenzer, Mai Abdel Mouti, Pia Neubert, Josephine Morris, Joanne Stockton, Sarah Bonham, Martin Fellermeyer, James Chettle, Román Fischer, Andrew D Beggs, Sarah P. Blagden
Software Mentions: 1
Published: over 6 years ago

10.1098/rsos.191976

On the relations of phase separation and Hi-C maps to epigenetics
Cited by: 16
Author(s): Prim B. Singh, Andrew G. Newman
Software Mentions: 1
Published: over 6 years ago

10.1186/1477-7827-12-76

Androgenic regulation of beta-defensins in the mouse epididymis
Cited by: 30
Author(s): Shuang Gang Hu, Man Zou, Guang Xin Yao, Bin Wu, Qin Zhu, Xiang Qi Li, Zi‐Jiang Chen, Yun Sun
Software Mentions: 1
Published: about 12 years ago

10.1186/s12931-016-0493-6

Gene profile of fibroblasts identify relation of CCL8 with idiopathic pulmonary fibrosis
Cited by: 33
Author(s): Jong-Uk Lee, Hyun Sub Cheong, Eun-Hee Shim, Da-Jeong Bae, Hun Soo Chang, Soo‐Taek Uh, Young Hoon Kim, Jong‐Sook Park, Bora Lee, Hyoung Doo Shin, Choon-Sik Park
Software Mentions: 1
Published: over 9 years ago

10.1186/1742-4690-10-156

Differential inhibition of LINE1 and LINE2 retrotransposition by vertebrate AID/APOBEC proteins
Cited by: 24
Author(s): Nataša Lindič, Maruška Budič, Toni Petan, Binyamin A. Knisbacher, Erez Y. Levanon, Nika Lovšin
Software Mentions: 1
Published: over 12 years ago

10.1186/s12977-016-0277-6

Retrovirus Integration Database (RID): a public database for retroviral insertion sites into host genomes
Cited by: 36
Author(s): Wei Shao, Jigui Shan, Mary F. Kearney, Xiaolin Wu, Frank Maldarelli, John W. Mellors, Brian T. Luke, John M. Coffin, Stephen H. Hughes
Software Mentions: 1
Published: about 10 years ago

10.1186/s12977-016-0294-5

Proceedings of the Frontiers of Retrovirology Conference 2016
Cited by: 2
Author(s): Irena Zurnic, Sylvia Hütter, Ute Lehmann, Nicole Stanke, Juliane Reh, Tobias Kern, Fabian Lindel, Gesche Gerresheim, Martin V. Hamann, Erik Müllers, Paul Lesbats, Peter Cherepanov, Erik Serrao, Alan Engelman, Dirk Lindemann, Claire da Silva Santos, Kévin Tartour, Andrea Cimarelli, Rya Burdick, Jianbo Chen, Jaya Sastri, Wei-Shau Hu, Vinay Kumar Pathak, Oliver T. Keppler, Karine Pradeau, Sylvia Eiler, Nicolas Lévy, Sarah Lennon, Sarah Cianférani, Stéphane Emiliani, Marc Ruff, Vincent Parissi, Sylvie Rato, Antonio Rausell, Miguel Luís López-Guadalupe Muñoz, Amalio Telenti, Angela Ciuffi, Alexander Zhyvoloup, Anat Melamed, I. G. Anderson, Delphine Planas, János Kriston-Vizi, Robin Ketteler, Chen Hsuin Lee, Andy Merritt, Petronela Ancuța, Charles R. M. Bangham, Ariberto Fassati, Anthony Rodari, Benoît Van Driessche, Mathilde Galais, Nadège Delacourt, Sylvain Fauquenoy, Caroline Vanhulle, Anna Kula, Arsène Burny, Olivier Rohr, Carine Van Lint, Thijs van Montfort, Renee van der Sluis, Dave Speijer, Ben Berkhout, Bo Meng, Andrzej Rutkowski, Neil Berry, Lars Dölken, Andrew Lever, Thomas Schuster, Benedikt Asbach, Ralf Wagner, Christine Groß, Veit Wiesmann, Katia Martina, Thomas Wittenberg, Jan Gettemans, Andrea K. Thoma-Kreß, Minghua Li, Eric O. Freed, Shan-Lu Liu, J.Y. Muller, Jan Münch, Xaver Sewald, Pradeep D. Uchil, Mark S. Ladinsky, Jagadish Beloor, Ruoxi Pi, Christin Herrmann, Nasim Motamedi, Thomas T. Murooka, Michael A. Brehm, Dale L. Greiner, Thorsten R. Mempel, Pamela J. Björkman, Priti Kumar, Walther Mothes, Simone Joas, Erica H. Parrish, Clement W. Gnanadurai, Edina Lump, Christina M. Stürzel, Nicholas F. Parrish, Ulrike Sauermann, Katharina Töpfer, Tina Schultheiss, Steven E. Bosinger, Guido Silvestri, Cristian Apetrei, N. Huot, Michaela Müller‐Trutwin, Daniel Sauter, Beatrice H. Hahn, Christiane Stahl–Hennig∥, Kirchhoff Frank, Gerald G. Schumann, Sabine Jung-Klawitter, Nina V. Fuchs, Kyle R. Upton, Martín Muñoz‐López, Ruchi Shukla, Jichang Wang, Marta García-Cañadas, Cesar Lopez‐Ruiz, Daniel J. Gerhardt, Attila Sebe, Ivana Grabundžija, Patricia Gerdes, Sylvia Merkert, Andrés Pulgarin, Anja Bock, Ulrike Held, Anett Witthuhn, Alexandra Haase, Ernst J. Wolvetang, Ulrich Martin, Zoltán Ivics, Zsuzsanna Izsvák, J.V. García-Pérez, Geoffrey J. Faulkner, T. H. Hurst, Aris Katzourakis, Gkikas Magiorkinis, Kerstin Schott, Rita Derua, Janna Seifried, Andreas Reuter, Heike Schmitz, Christiane Tondera, Alberto Brandariz-Núñez, Felipe Díaz-Griffero, Veerle Janssens, Renate König, Hanna‐Mari Baldauf, Lena Stegmann, Sarah-Marie Schwarz, Maud Trotard, Margarethe Martin, G.L. Lenzi, Manja Burggraf, Xiaoyu Pan, Oliver I. Fregoso, Efrem S. Lim, Libin Abraham, Elina Erikson, Laura Nguyen, Ina Ambiel, Frank Rutsch, Baek Kim, Michael Emerman, Oliver T. Fackler, Sabine Wittmann, Rayk Behrendt, Bianca Volkmann, Kristin Eissmann, Thomas Gramberg, Sebastian Bolduan, Herwig Koppensteiner, Stefanie Regensburg, Ruth Brack‐Werner, Rika Draenert, Michael Schindler, Aurélie Ducroux, Shuting Xu, Aparna Ponnurangam, Sergej Franz, Angelina Malassa, Ellen Ewald, Christine Goffinet, Sin‐Yee Fung, Ching-Ping Chan, Chun-Kit Yuen, Kin‐Hang Kok, Chin-Ping Chan, Dong-Yan Jin, Ulf Dittmer, Dorota Kmieć, Shilpa Iyer, Christina M. Stürzel, Beatrice H. Hahn, Yasuo Ariumi, Mariko Yasuda-Inoue, Koudai Kawano, Seiichiro Tateishi, Priscilla Turelli, Alex Compton, Nicolas Roy, Françoise Porrot, Anne Billet, Nicoletta Casartelli, Jacob S. Yount, Liang Chen, Oliver Schwartz, Carsten Magnus, Lucia Reh, Penny L. Moore, Therese Uhr, Jacqueline Weber, Lynn Morris, Alexandra Trkola, Rashel V. Grindberg, Erika Schlaepfer, Gideon Schreiber, Viviana Simon, Roberto F. Speck, Zeger Debyser, Lenard Vranckx, Jonas Demeulemeester, Suha Saleh, Eric Verdin, Anna Cereseto, Frauke Christ, Rik Gijsbers, Gang Wang, Ning Zhao, Atze T. Das, Josef Köstler, Beatriz Perdiguero, Mariano Estéban, Bertram L. Jacobs, David C. Montefiori, Celia C. LaBranche, Nicole L. Yates, Georgia D. Tomaras, Guido Ferrari, Kathryn E. Foulds, Mario Roederer, Gary Landucci, Donald N. Forthal, Michael S. Seaman, Natalie Hawkins, Steven G. Self, Sanjay Phogat, James Tartaglia, Susan W. Barnett, Brian Burke, Anthony D. Cristillo, Song Ding, Jonathan L. Heeney, Giuseppe Pantaleo, Viktoria Stab, Armin Ensser, Bettina Tippler, D. Jeff Burton, Matthias Tenbusch, Klaus Überla, Galit Alter, Giuseppe Lofano, Anne‐Sophie Dugast, Viraj Kulkarni, Todd J. Suscovich, Tatiana Opazo, Felipe Barraza, Diego Herrera, Andrea Garcés, Tomas Schwenke, Diego León Tapia, Jorge Cancino, Gloria Arriagada, Christina Haußner, Dominik Damm, Anette Rohrhofer, Bárbara Schmidt, Jutta Eichler, Rebecca Midgley, J. Wheeldon, Vincent Piguet, Priyanka Khopkar, Megha Rohamare, S. R. Kulkarni, Ana Godinho‐Santos, Allan J. Hance, João Gonçalves, Fabrizio Mammano, Romain Gasser, Meriem Hamoudi, Martina Pellicciotta, Zhicheng Zhou, Visdeloup Clara, Philippe Colin, Martine Braibant, Bernard Lagane, Matteo Negroni, Jula Wamara, Norbert Bannert, Thibault Mésplède, Nathan Osman, Kaitlin Anstett, Jiaming Calvin Liang, Hanh Thi Pham, Mark A. Wainberg, Wei Shao, Jigui Shan, Mary F Kearney, Xiaolin Wu, Frank Maldarelli, John W. Mellors, Brian T. Luke, John M. Coffin, Stephen Hughes, Thomas Fricke, Silvana Opp, Caitlin Shepard, D. A. Ivanov, José Carlos Valle-Casuso, Marine Kanja, Pierre Cappy, Daniela Lener, Ekaterina Knyazhanskaya, Andrey Anisenko, Timofei S. Zatsepin, Marina Gottikh, Alexander Komkov, Anastasia A. Minervina, G Nugmanov, В. Ю. Назаров, Konstantin Khodosevich, Ilgar Z. Mamedov, Yuri B Lebedev, Marta Colomer-Lluch, Ruth Serra-Moreno, Ambra Sarracino, Lavina Gharu, Alexander Pasternak, Alessandro Marcello, Ann Marie McCartin, Anurag Kulkarni, Valentin Le Douce, Virginie Gautier, Ann Baeyens, Evelien Naessens, Anouk Van Nuffel, Karin Weening, Anne Marie Reilly, Eva Claeys, Wim Trypsteen, Linos Vandekerckhove, Sven Eyckerman, Kris Gevaert, Bruno Verhasselt, Hoi Ping Mok, Nicholas Norton, Axel Fun, Jack Hirst, Mark R. Wills, Dalibor Miklík, Filip Šenigl, Jiřı́ Hejnar, Jun-ichi Sakuragi, Sayuri Sakuragi, Masaru Yokoyama, Tatsuo Shioda, Hironori Sato, Jochen Bodem, Rebecca Moschall, Sarah Denk, Steffen Erkelenz, Christian Schenk, Heiner Schaal, Norbert Donhauser, Ellen Socher, Millen Sebastian, Heinrich Sticht, Melanie Mann, Guochao Wei, Matthew J. Betts, Liu Yang, Timo Kehl, Robert B. Russell, Martin Löchelt, Oliver Hohn, Saeed Mostafa, Kirsten Hanke, Stephen Norley, Chia‐Yen Chen, Masashi Shingai, Pedro Borrego, Nuno Taveira, Klaus Strebel, Chris Hellmund, Melanie Friedrich, Friedrich L. Hahn, Christian Setz, Pia Rauch, Kirsten Fraedrich, Alina Matthaei, Petra Henklein, Maximilian Traxdorf, Torgils Fossen, Ulrich S. Schubert, Aya Khwaja, Meytal Galilee, Akram Alian, Birco Schwalbe, Heiko Hauser, Michael Schreiber, Mirte Scherpenisse, Young-Keol Cho, Jung-Eun Kim, Dong‐Hoon Jeong, Kateřina Trejbalová, Martina Benešová, Dana Kučerová, Zdeňka Vernerová, Rachel Amouroux, Petra Hájková, Daniel Elleder, Tomáš Hron, Helena Farkasova, Padhi Abinash, Jan Pačes, Henan Zhu, Robert J. Gifford, Pablo R. Murcia, Maria Luisa Carrozza, Anna-Maria Niewiadomska, Maurizio Mazzei, Mounir Abi-Said, Joseph Hughes, Stéphane Hué, Adetayo Emmanuel Obasa, G Jacobs, Susan Engelbrecht, Katharina Mack, Kathrin Starz, Matthias Geyer, Frédéric Bibollet-Ruche, Marie Leoz, Jean Christophe Plantier, Ayele Argaw-Denboba, Emanuela Balestrieri, Annalucia Serafino, Ilaria Bucci, Chiara Cipriani, Corrado Spadafora, Paolo Sinibaldi-Vallebona, Claudia Matteucci, Sreenivasan Jayashree, Ujjwal Neogi, Anil Kumar Chhangani, Shravan Sing Rathore, Bajrang R. J. Mathur, Adeyemi Abati, Busra Koc, Tuba Çiğdem Oğuzoğlu, Takatoshi Shimauchi, Stephan M. Caucheteux, Jocelyn Turpin, Katja Finsterbusch, Y. Tokura, Shanti Souriant, Balboa Luciana, Karine Pingris, Denise Kviatcowsky, Brigitte Raynaud-Messina, Céline Cougoule, Ingrid Mercier, Marcelo J. Kuroda, Pablo González-Montaner, Sandra Inwentarz, Eduardo José Moraña, Marı́a del Carmen Sasiain, Olivier Neyrolles, Maridonneau-Parini Isabelle, Lugo-Villarino Geanncarlo, Verollet Christel, Alexandra Herrmann, Dominique Thomas, Nerea Ferreirós Bouzas, Xavier Lahaye, Anvita Bhargava, Takeshi Satoh, Matteo Gentili, Silvia Cerboni, Aymeric Silvin, Cécile Conrad, Hakim Ahmed-Belkacem, Elisa C. Rodriguez, Jean-François Guichou, Nathalie Bosquet, Piel Matthieu, Roger Le Grand, Megan King, Jean–Michel Pawlotsky, Nicolas Manel, Henning Hofmann, Bénédicte Vanwalscappel, Nicolin Bloch, Nathaniel R. Landau, Stanislav Indik, Benedikt Hagen, José Carlos Valle-Casuso, Awatef Allouch, A Baltrus David, Françoise Barré‐Sinoussi, Monsef Benkirane, Gianfranco Pancino, Asier Sáez‐Cirión, Wing-Yiu Jason Lee, Richard P. Sloan, Bianca Schulte, Jonas Blomberg, Luana Vargiu, Patricia Rodriguez-Tomé, Enzo Tramontano, Göran Sperber, Namita Kumari, Tatiana Ammosova, Sharmeen Diaz, Patricia O'Neal, Sergeï Nekhai, Audrey Fahrny, Gustavo Gers-Huber, Annette Audigé, Anitha Jayaprakash, Ravi Sachidanandam, Matt Hernandez, Marsha Dillon-White, Emmanuel A. Maze, Claire Ham, Neil Almond, Greg J. Towers, Robert Belshaw, Patrícia de Sousa-Pereira, Joana Abrantes, Massimo Pizzato, Pedro J. Esteves, Tanja Kahle, Sven Schmitt, Laura Merkel, Nina Reuter, Thomas Stamminger, Ilaria Dalla Rosa, Kate N. Bishop, Antonella Spinazzola, Harriet C. T. Groom, Gabrielle Vièyres, Mathias Müsken, Thomas Zillinger, Veit Hornung, Winfried Barchet, Susanne Häußler, Thomas Pietschmann, Aneela Javed, Nicole Leuchte, Gabriela Salinas, Lennart Opitz, Sieghart Sopper, Christiane Mummert, Christian Hofmann, Angela Hückelhoven, Silke Bergmann, Sandra M. Müller-Schmucker, E. Harrer, Jan Dörrie, Niels Schaft, Thomas Harrer, Laure Cardinaux, M. L. Zahno, Hannelore Vogt, Reto Zanoni, Gregory Bertoni, Maximilian Muenchhoff, Philip Goulder, Oliver T. Keppler, Stephanie V Rebensburg, Markus Helfer, Yuwei Zhang, Huicheng Chen, Annie Bernier, Annie Gosselin, Jean Pierre Routy, Birgitta M. Wöhrl, Anna Schneider, Angela Corona, Imke Spöring, Mareike A Jordan, B. Buchholz, Elias Maccioni, Roberto Di Santo, Kristian Schweimer, Christian Scholz Scholz, Brian T. Weinert, Sebastian Wagner, Petra Beli, Yoichi Miyake, Jiazhuo Qi, Lars Jensen, Werner Streicher, Anna R. McCarthy, Nicholas J. Westwood, Sonia Laı́n, Jürgen Cox, Patrick Matthias, Matthias Mann, James E. Bradner, Chunaram Choudhary, Marcel Stern, Elena Valletta, Caterina Frezza, Francesca Marino‐Merlo, Sandro Grelli, Anna Lucia Serafino, Antonio Mastino, Beatrice Macchi, Meike Kaulfuß, Sonja Windmann, Wibke Bayer, Sello Given Mikasi, R. G. Hess, Michael Storcksdieck gen. Bonsmann, Carsten J. Kirschning, Lepenies Bernd, Anne Kolenbrander, Vladimir Temchura, Kenta Iijima, Junya Kobayashi, Yukihito Ishizaka
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.schres.2016.11.034

Novel brain expressed RNA identified at the MIR137 schizophrenia-associated locus
Cited by: 12
Author(s): Olympia Gianfrancesco, Alix Warburton, David A. Collier, Vivien J. Bubb, John P. Quinn
Software Mentions: 1
Published: about 9 years ago

10.1016/j.schres.2018.02.036

Regulatory characterisation of the schizophrenia-associated CACNA1C proximal promoter and the potential role for the transcription factor EZH2 in schizophrenia aetiology
Cited by: 21
Author(s): Kimberley Billingsley, Maurizio Manca, Olympia Gianfrancesco, David A. Collier, Helen Sharp, Vivien J. Bubb, John P. Quinn
Software Mentions: 1
Published: almost 8 years ago

10.1007/s11434-015-0905-x

Transposable elements at the center of the crossroads between embryogenesis, embryonic stem cells, reprogramming, and long non-coding RNAs
Cited by: 48
Author(s): Andrew P. Hutchins, Duanqing Pei
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41597-021-00878-y

AI-assisted tracking of worldwide non-pharmaceutical interventions for COVID-19
Cited by: 25
Author(s): Parthasarathy Suryanarayanan, Ching-Huei Tsou, Ananya Poddar, Diwakar Mahajan, Bharath Dandala, Piyush Madan, Anshul Agrawal, Charles Wachira, Osebe Mogaka Samuel, Osnat Bar-Shira, Clifton Kipchirchir, Sharon Okwako, William Ogallo, Fred Otieno, Timothy Nyota, Fiona Matu, Vesna Barros, Daniel Shats, Oren Kagan, Sekou L. Remy, Oliver Bent, Pooja Guhan, Shilpa Mahatma, Aisha Walcott-Bryant, Divya Pathak, Michal Rosen-Zvi
Software Mentions: 1
Published: over 5 years ago

10.1038/srep10247

Evaluating information content of SNPs for sample-tagging in re-sequencing projects
Cited by: 20
Author(s): Hao Hu, Xiang Liu, Wenfei Jin, Hans‐Hilger Ropers, Thomas F. Wienker
Software Mentions: 1
Published: over 11 years ago

10.1038/srep09930

miR-148a is Associated with Obesity and Modulates Adipocyte Differentiation of Mesenchymal Stem Cells through Wnt Signaling
Cited by: 134
Author(s): Chunmei Shi, Min Zhang, Meiling Tong, Lei Yang, Lei Pang, Ling Chen, Gao Xu, Xia Chi, Hong Qin, Yuhui Ni, Chenbo Ji, Xirong Guo
Software Mentions: 1
Published: over 11 years ago

10.1038/srep10423

Unique somatic and malignant expression patterns implicate PIWI-interacting RNAs in cancer-type specific biology
Cited by: 137
Author(s): Victor D. Martínez, Emily A. Vucic, Kelsie L. Thu, Roland Hubaux, Katey S.S. Enfield, Larissa A. Pikor, Daiana D. Becker‐Santos, Carolyn J. Brown, Stephen Lam, Wan L. Lam
Software Mentions: 1
Published: over 11 years ago

10.1038/srep12609

Identification of the miRNA targetome in hippocampal neurons using RIP-seq
Cited by: 28
Author(s): Josephine Malmevik, Rebecca Petri, Thies Klüssendorf, Pina Knauff, Malin Åkerblom, Jenny Johansson, Shamit Soneji, Johan Jakobsson
Software Mentions: 1
Published: about 11 years ago

10.1038/srep15215

Transcription factor and miRNA co-regulatory network reveals shared and specific regulators in the development of B cell and T cell
Cited by: 52
Author(s): Ying Lin, Qiong Zhang, Hongmei Zhang, Wei Liu, Chun–Jen Liu, Qiubai Li, An‐Yuan Guo
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep16432

Protein receptor-independent plasma membrane remodeling by HAMLET: a tumoricidal protein-lipid complex
Cited by: 22
Author(s): Aftab Nadeem, Jeremy Sanborn, Douglas L. Gettel, Ho C S James, Anna Rydström, Viviane N. Ngassam, Thomas Kjær Klausen, Stine Falsig Pedersen, Matti Lam, Atul N. Parikh, Catharina Svanborg
Software Mentions: 1
Published: almost 11 years ago

10.1038/srep19531

Panel-based NGS Reveals Novel Pathogenic Mutations in Autosomal Recessive Retinitis Pigmentosa
Cited by: 46
Author(s): Raquel Pérez-Carro, Marta Cortón, Iker Sánchez‐Navarro, Olga Zurita, Noelia Sanchez-Bolivar, Rocío Sánchez-Alcudia, Stefan H. Lelieveld, Elena Aller, Miguel Ángel López-Martínez, Ma Isabel López-Molina, Patrícia José, Fiona Blanco‐Kelly, Rosa Riveiro-Álvarez, Christian Gilissen, José María Millán, Almudena Ávila-Fernández, Carmen Ayuso
Software Mentions: 1
Published: over 10 years ago

10.1038/srep20179

SMARCAD1 is an ATP-dependent stimulator of nucleosomal H2A acetylation via CBP, resulting in transcriptional regulation
Cited by: 24
Author(s): Masamichi Doiguchi, Takeya Nakagawa, Yuko Imamura, Mitsuhiro Yoneda, Miki Higashi, Kazuishi Kubota, Satoshi Yamashita, Hiroshi Asahara, Midori Iida, Satoshi Fujii, Tsuyoshi Ikura, Ziying Liu, Tulip Nandu, W. Lee Kraus, Hitoshi Ueda, Takashi Ito
Software Mentions: 1
Published: over 10 years ago

10.1038/srep21579

Human Vascular Microphysiological System for in vitro Drug Screening
Cited by: 72
Author(s): Cristina E. Fernández, Ringo Yen, Samantha M. Perez, Hillary W. Bedell, Thomas J. Povsic, William M. Reichert, George A. Truskey
Software Mentions: 1
Published: over 10 years ago

10.1038/srep27272

Purifying selection shapes the coincident SNP distribution of primate coding sequences
Cited by: 5
Author(s): Chia-Ying Chen, Li-Yuan Hung, Chan-Shuo Wu, Trees‐Juen Chuang
Software Mentions: 1
Published: about 10 years ago

10.1038/srep27680

Comparative transcriptomic analysis of human and Drosophila extracellular vesicles
Cited by: 41
Author(s): Fabio Alexis Lefebvre, Louis Philip Benoit Bouvrette, Lilyanne Perras, Alexis Blanchet-Cohen, Delphine Garnier, Janusz Rak, Éric Lécuyer
Software Mentions: 1
Published: about 10 years ago

10.1038/srep33388

Pits, a protein interacting with Ttk69 and Sin3A, has links to histone deacetylation
Cited by: 8
Author(s): Gwo-Jen Liaw
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep32713

ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis
Cited by: 45
Author(s): Amit Gupta, Karambir Kaur, Abhishek Rajput, Sandeep Kumar Dhanda, Manika Sehgal, Mohammad Shoaib Khan, Isha Monga, Showkat Ahmad Dar, Sandeep Singh, Gandharva Nagpal, Salman Sadullah Usmani, Ashwani Kumar Thakur, Guneet Kaur, Shivangi Sharma, A. Bhardwaj, Abid Qureshi, Gajendra P. S. Raghava, Manoj Kumar
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep36491

ISL1-based LIM complexes control Slit2 transcription in developing cranial motor neurons
Cited by: 15
Author(s): Kyung Tai Kim, Namhee Kim, Hwan Ki Kim, Hojae Lee, Hannah N. Gruner, Péter Gergics, Chungoo Park, Grant S. Mastick, Hae Chul Park, Mi Ryoung Song
Software Mentions: 1
Published: almost 10 years ago

10.1038/srep39447

Lotus Base: An integrated information portal for the model legume Lotus japonicus
Cited by: 105
Author(s): Terry Mun, Asger Bachmann, Vikas Gupta, Jens Stougaard, Stig Uggerhøj Andersen
Software Mentions: 1
Published: over 9 years ago

10.1038/srep39848

Microvasculature remodeling in the mouse lower gut during inflammaging
Cited by: 20
Author(s): Jae-Ho Jeong, KwangSoo Kim, Dukhwan Lim, Kun-Hee Kim, Hyung-Seok Kim, Sungsu Lee, Joo‐Hye Song, Byoung-Gon Moon, Hyon E. Choy, Sang Chul Park
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43296

Glucocorticoid receptor positively regulates transcription of FNDC5 in the liver
Cited by: 28
Author(s): Hyoung Kyu Kim, Yu Jeong Jeong, In-Sung Song, Yeon Hee Noh, Kyo Won Seo, Min Kim, Jin Han
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43605

A Core Regulatory Circuit in Glioblastoma Stem Cells Links MAPK Activation to a Transcriptional Program of Neural Stem Cell Identity
Cited by: 19
Author(s): Gregory Riddick, Svetlana Kotliarova, Virginia Rodriguez, H. S. Kim, Amanda Linkous, Andrew J. Storaska, Susie Ahn, Jennifer Walling, Galina I. Belova, Howard A. Fine
Software Mentions: 1
Published: over 9 years ago

10.1038/srep43733

Heterozygous mutation of eEF1A1b resulted in spermatogenesis arrest and infertility in male tilapia, Oreochromis niloticus
Cited by: 27
Author(s): Jinlin Chen, Dongneng Jiang, Dejie Tan, Zheng Fan, Yingying Wei, Minghui Li, Deshou Wang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep45338

Identification and comparative analysis of the epidermal differentiation complex in snakes
Cited by: 24
Author(s): Karin Brigit Holthaus, Veronika Mlitz, Bettina Strasser, Erwin Tschachler, Lorenzo Alibardi, Leopold Eckhart
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-15153-7

Identification of novel cis-regulatory elements of Eya1 in Xenopus laevis using BAC recombineering
Cited by: 1
Author(s): Santosh Kumar Maharana, Nicolas Pollet, Gerhard Schlosser
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.01236

Global cellular response to chemotherapy-induced apoptosis
Cited by: 60
Author(s): Arun P. Wiita, Etay Ziv, Paul J. Wiita, Anatoly Urisman, Olivier Julien, Alma L. Burlingame, Jonathan S. Weissman, James A. Wells
Software Mentions: 1
Published: almost 13 years ago

10.7554/eLife.44558

Decoys provide a scalable platform for the identification of plant E3 ubiquitin ligases that regulate circadian function
Cited by: 23
Author(s): Ann Feke, Wei Liu, Jing Han Hong, Man-Wah Li, Chin-Mei Lee, Elton Zhou, Joshua M. Gendron
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.12059

Quantitative neuroanatomy for connectomics in Drosophila
Cited by: 247
Author(s): Casey M Schneider-Mizell, Stephan Gerhard, Mark Longair, Tom Kazimiers, Feng Li, Maarten Zwart, Andrew Champion, Frank M. Midgley, Richard D. Fetter, Stephan Saalfeld, Albert Cardona
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.29510

Genomic regions controlling shape variation in the first upper molar of the house mouse
Cited by: 6
Author(s): Luisa F. Pallares, Ronan Ledevin, Sophie Pantalacci, Leslie M. Turner, Eiríkur Steingrímsson, Sabrina Renaud
Software Mentions: 1
Published: almost 9 years ago

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