pypi: browser | Projects | Ecosyste.ms: Papers

10.1016/j.dib.2017.05.050

Datasets on the genomic positions of the MLL1 morphemes, the ZFP57 binding site, and ZFBS-Morph overlaps in the build mm9 of the mouse genome
Cited by: 5
Author(s): Minou Bina, Phillip Wyss, Carol X. Song
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2016.02.053

Supporting data for characterization of non-coding RNAs associated with the Neuronal growth regulator 1 (NEGR1) adhesion protein
Cited by: 2
Author(s): Prameet Kaur, Jun Tan, Dwi Setyowati Karolina, Sugunavathi Sepramaniam, Arunmozhiarasi Armugam, Tsun-Hon Peter Wong, Kandiah Jeyaseelan
Software Mentions: 1
Published: over 10 years ago

10.1093/database/bat072

HTS-DB: an online resource to publish and query data from functional genomics high-throughput siRNA screening projects
Cited by: 1
Author(s): Rebecca E. Saunders, Rachael Instrell, Rossella Rispoli, Ming Jiang, Michael Howell
Software Mentions: 1
Published: almost 14 years ago

10.1093/database/bat087

DBM-DB: the diamondback moth genome database
Cited by: 59
Author(s): Weiqi Tang, Liying Yu, Weiyi He, Yang Guang, Fushi Ke, Simon W. Baxter, Shijun You, Carl J. Douglas, Minsheng You
Software Mentions: 1
Published: almost 13 years ago

10.1093/database/baz145

Strengthening of banana breeding through data digitalization
Cited by: 3
Author(s): Balasubramanian Vignesh Kumar, S. Backiyarani, A. Chandrasekar, Swaminathan Saranya, D. Ramajayam, M. Saraswathi, P. Durai, S. Kalpana, S. Uma
Software Mentions: 1
Published: almost 7 years ago

10.1093/database/bay047

A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae
Cited by: 1
Author(s): Junkyoung Choe, Jieun Kim, Bongwoo Lee, Jeong-Hee Lee, Moon Suk Nam, Youn‐Il Park, Sung-Hwan Jo
Software Mentions: 1
Published: almost 9 years ago

10.1093/database/baz146

KRGDB: the large-scale variant database of 1722 Koreans based on whole genome sequencing
Cited by: 32
Author(s): Kwang Su Jung, Kyung‐Won Hong, Hyun Youn Jo, Jongpill Choi, Hyo-Jeong Ban, Seongbeom Cho, Myungguen Chung
Software Mentions: 1
Published: almost 7 years ago

10.1093/database/bav066

toxoMine: an integrated omics data warehouse forToxoplasma gondiisystems biology research
Cited by: 7
Author(s): David B. Rhee, Matthew McKnight Croken, Kevin Shieh, Julie Sullivan, Gos Micklem, Kami Kim, Aaron Golden
Software Mentions: 1
Published: almost 12 years ago

10.1093/database/baz025

PamulDB: a comprehensive genomic resource for the study of human- and animal-pathogenic Pasteurella multocida
Cited by: 1
Author(s): Li Tian, Xiaofei Xu, Huihui Du, Li Li, Nengzhang Li, Zeyang Zhou, Yuanyi Peng
Software Mentions: 1
Published: almost 8 years ago

10.1093/database/bay068

Atlas ofSchistosoma mansonilong non-coding RNAs and their expression correlation to protein-coding genes
Cited by: 8
Author(s): Elton J. R. Vasconcelos, Vinícius C. Mesel, Luis DaSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo Sena Amaral, Sérgio Verjovski-Almeida
Software Mentions: 1
Published: almost 9 years ago

10.1093/database/baab056

MODB: a comprehensive mitochondrial genome database for Mollusca
Cited by: 0
Author(s): Jiangyong Qu, Yanran Xu, Yutong Cui, Sen Wu, Lijun Wang, Xiumei Liu, Zhikai Xing, Xiaoyu Guo, Shanshan Wang, Ruoran Li, Xiang Sun, Xiang Li, Xiyue Wang, Tao Liu, Xumin Wang
Software Mentions: 1
Published: about 5 years ago

10.1093/database/baz016

Increased interactivity and improvements to theGigaSciencedatabase, GigaDB
Cited by: 9
Author(s): Sizhe Xiao, Chris Armit, Scott Edmunds, Laurie Goodman, Peter Li, Mary Ann Tuli, Christopher I. Hunter
Software Mentions: 1
Published: almost 8 years ago

10.1093/database/baw144

On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase
Cited by: 24
Author(s): Hans Ienasescu, Kang Li, Robin Andersson, Morana Vitezic, Sarah Rennie, Yun Chen, Kristoffer Vitting-Seerup, Emil Lagoni, Mette Boyd, Jette Bornholdt, Michiel de Hoon, Hideya Kawaji, Timo Lassmann, Yoshihide Hayashizaki, Alistair R.R. Forrest, Piero Carninci, Albin Sandelin
Software Mentions: 1
Published: almost 11 years ago

10.1093/database/bau108

The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud
Cited by: 4
Author(s): Kamran Karimi, Peter D. Vize
Software Mentions: 1
Published: about 12 years ago

10.3389/fgene.2021.647246

Associations Between Genotype and Peripheral Complement Proteins in First-Episode Psychosis: Evidences From C3 and C4
Cited by: 3
Author(s): Yu Chen, Zhenguo Zhao, Lin Fen, Lifang Wang, Zheng Lin, Weihua Yue
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.01097

Hypermethylation of N-Acetyltransferase 1 Is a Prognostic Biomarker in Colon Adenocarcinoma
Cited by: 9
Author(s): Cheng Shi, Liyang Xie, Yanping Tang, Long Long, Jilin Li, Bang-li Hu, Kezhi Li
Software Mentions: 1
Published: about 7 years ago

10.3389/fgene.2015.00338

Identification of Low-Confidence Regions in the Pig Reference Genome (Sscrofa10.2)
Cited by: 26
Author(s): Amanda Warr, Christelle Robert, David Hume, Alan Archibald, Nader Deeb, Michael Watson
Software Mentions: 1
Published: almost 11 years ago

10.3389/fgene.2021.714491

Chromosome X-wide Analysis of Positive Selection in Human Populations: Common and Private Signals of Selection and its Impact on Inactivated Genes and Enhancers
Cited by: 1
Author(s): Pablo Villegas-Mirón, Sandra Acosta, Jessica Nye, Jaume Bertranpetit, Hafid Laayouni
Software Mentions: 1
Published: about 5 years ago

10.3389/fgene.2017.00202

Recombination Is Responsible for the Increased Recovery of Drug-Resistant Mutants with Hypermutated Genomes in Resting Yeast Diploids Expressing APOBEC Deaminases
Cited by: 5
Author(s): Artem G. Lada, Elena I. Stepchenkova, Anna S. Zhuk, Sergei Kliver, Igor B. Rogozin, Dmitrii E. Polev, Alok Dhar, Youri I. Pavlov
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2019.01573

Prognostic Significance of Potential Immune Checkpoint Member HHLA2 in Human Tumors: A Comprehensive Analysis
Cited by: 27
Author(s): Ben Wang, Zhujie Ran, Mengmeng Liu, Yunsheng Ou
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2018.02906

Long Non-coding RNAs Are Central Regulators of the IL-1β-Induced Inflammatory Response in Normal and Idiopathic Pulmonary Lung Fibroblasts
Cited by: 41
Author(s): Marina R. Hadjicharalambous, Benoı̂t Roux, Carol Feghali‐Bostwick, Lynne A. Murray, D. S. Clarke, Mark A. Lindsay
Software Mentions: 1
Published: almost 8 years ago

10.3389/fimmu.2018.02437

Vaginal Lactobacilli Induce Differentiation of Monocytic Precursors Toward Langerhans-like Cells: in Vitro Evidence
Cited by: 13
Author(s): Jie‐Young Song, Fengchao Lang, Na Zhao, Yan Guo, Huatang Zhang
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2013.00416

A Guide to Bioinformatics for Immunologists
Cited by: 12
Author(s): Fiona Whelan, Nicholas V. L. Yap, Michael G. Surette, G. Brian Golding, Dawn M. E. Bowdish
Software Mentions: 1
Published: almost 14 years ago

10.3389/fimmu.2019.00409

Differential Requirement of Cd8 Enhancers E8I and E8VI in Cytotoxic Lineage T Cells and in Intestinal Intraepithelial Lymphocytes
Cited by: 3
Author(s): Alexandra Franziska Gülich, Teresa Preglej, Patricia Hamminger, Marlis Alteneder, Caroline Tizian, Maria Jonah Orola, Sawako Muroi, Ichiro Taniuchi, Wilfried Ellmeier, Shoji Sakaguchi
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2018.02601

The Pleiotropic Immunomodulatory Functions of IL-33 and Its Implications in Tumor Immunity
Cited by: 73
Author(s): Claudia Afferni, Carla Buccione, Sara Andreone, Maria Rosaria Galdiero, Gilda Varricchi, Gianni Marone, Fabrizio Mattei, Giovanna Schiavoni
Software Mentions: 1
Published: about 8 years ago

10.3389/fimmu.2019.02416

Condemned or Not to Die? Gene Polymorphisms Associated With Cell Death in Pemphigus Foliaceus
Cited by: 14
Author(s): Valéria Bumiller-Bini, Gabriel Adelman Cipolla, M Spadoni, Danillo G. Augusto, María Luiza Petzl-Erler, Márcia Holsbach Beltrame, Angelica Beate Winter Boldt
Software Mentions: 1
Published: about 7 years ago

10.3389/fimmu.2020.02176

Dynamic and Differential Expression of Duplicated Cxcr4/Cxcl12 Genes Facilitates Antiviral Response in Hexaploid Gibel Carp
Cited by: 10
Author(s): Wei-Jia Lu, Li Zhou, Fan-Xiang Gao, Yanmin Zhou, Zhi Li, Xiaojuan Zhang, Yang Wang, Jian‐Fang Gui
Software Mentions: 1
Published: about 6 years ago

10.3389/fimmu.2012.00260

Chromatinized Protein Kinase C-θ: Can It Escape the Clutches of NF-κB?
Cited by: 19
Author(s): Elissa L Sutcliffe, Jasmine Li, Anjum Zafar, Kristine Hardy, Reena Ghildyal, Robert McCuaig, Nicole C. Norris, Pek Siew Lim, Peter J. Milburn, Marco G. Casarotto, Gareth Denyer, Sudha Rao
Software Mentions: 1
Published: almost 15 years ago

10.3389/fimmu.2013.00291

Bioinformatics Analysis of the Factors Controlling Type I IFN Gene Expression in Autoimmune Disease and Virus-Induced Immunity
Cited by: 19
Author(s): Di Feng, Betsy J. Barnes
Software Mentions: 1
Published: almost 14 years ago

10.3389/fmicb.2020.01209

Small RNAs in Outer Membrane Vesicles and Their Function in Host-Microbe Interactions
Cited by: 32
Author(s): Sara Ahmadi Badi, Stefania Paola Bruno, Arfa Moshiri, Samira Tarashi, Seyed Davar Siadat, Andrea Masotti
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2017.01177

Comparative Genomics Identifies a Novel Conserved Protein, HpaT, in Proteobacterial Type III Secretion Systems that Do Not Possess the Putative Translocon Protein HrpF
Cited by: 18
Author(s): Céline Pesce, Jonathan M. Jacobs, Edwige Berthelot, Marion Perret, Taca Vancheva, Claude Bragard, Ralf Koebnik
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.582022

The 23S Ribosomal RNA From Pyrococcus furiosus Is Circularly Permuted
Cited by: 9
Author(s): Ulf Birkedal, Bertrand Beckert, Daniel N. Wilson, Henrik Nielsen
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2019.00707

The Lactococcus lactis Pan-Plasmidome
Cited by: 21
Author(s): Philip Kelleher, Jennifer Mahony, Francesca Bottacini, Gabriele Andrea Lugli, Marco Ventura, Douwe van Sinderen
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.00383

Comparative Genomics of Environmental and Clinical Burkholderia cenocepacia Strains Closely Related to the Highly Transmissible Epidemic ET12 Lineage
Cited by: 15
Author(s): Josselin Bodilis, Elodie Denet, Elisabeth Brothier, Arnault Graindorge, Sabine Favre-Bonté, Sylvie Nazaret
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2019.01313

Continuous Culture Adaptation of Methylobacterium extorquens AM1 and TK 0001 to Very High Methanol Concentrations
Cited by: 15
Author(s): Sophia Belkhelfa, David Roche, Ivan Dubois, Anne Berger, Valérie Delmas, Laurence Cattolico, Alain Perret, Karine Labadie, Aude Perdereau, Ekaterina Darii, Emilie Pateau, Véronique de Berardinis, Marcel Salanoubat, Madeleine Bouzon, Volker Döring
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.00043

RcLS2F – A Novel Fungal Class 1 KDAC Co-repressor Complex in Aspergillus nidulans
Cited by: 8
Author(s): Ingo Bauer, Silke Gross, Petra Merschak, Leopold Kremser, Betim Karahoda, Özgür Bayram, Beate Abt, Ulrike Binder, Fabio Gsaller, Herbert Lindner, Gerald Brosch, Stefan Graessle
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2020.01858

CoronaVR: A Computational Resource and Analysis of Epitopes and Therapeutics for Severe Acute Respiratory Syndrome Coronavirus-2
Cited by: 21
Author(s): Amit Gupta, Mohammad Shoaib Khan, Shubham Choudhury, Adhip Mukhopadhyay, . Sakshi, Amber Rastogi, Ashwani Kumar Thakur, Pallawi Kumari, Manmeet Kaur, . Shalu, Chanchal Saini, Vandna Sapehia, Barkha, Pradeep Kumar Patel, Kailash T. Bhamare, Manoj Kumar
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2016.01411

Investigating the Inactivation Mechanism of Bacillus subtilis Spores by High Pressure CO2
Cited by: 10
Author(s): Lei Rao, Feng Zhao, Yongtao Wang, Fang Chen, Xiaosong Hu, Xiaojun Liao
Software Mentions: 1
Published: about 10 years ago

10.3389/fmolb.2021.693651

Pan-Cancer Analysis Identified C1ORF112 as a Potential Biomarker for Multiple Tumor Types
Cited by: 8
Author(s): Jiaxuan Chen, Haoming Mai, Haitao Chen, Bin Zhou, Jinlin Hou, Deke Jiang
Software Mentions: 1
Published: about 5 years ago

10.3389/fnmol.2018.00404

Antidepressant but Not Prophylactic Ketamine Administration Alters Calretinin and Calbindin Expression in the Ventral Hippocampus
Cited by: 11
Author(s): Christina T LaGamma, William C. Tang, Ashlea A. Morgan, Josephine C. McGowan, Rebecca A. Brachman, Christine A. Denny
Software Mentions: 1
Published: about 8 years ago

10.3389/fncir.2015.00078

A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies
Cited by: 103
Author(s): Gregory D. Marquart, Kathryn M. Tabor, Mary Elizabeth Brown, Jennifer L Strykowski, Gaurav K. Varshney, Thomas Mueller, Shawn M. Burgess, Shin‐ichi Higashijima, Harold A. Burgess
Software Mentions: 1
Published: almost 11 years ago

10.3389/fnins.2016.00441

Evaluation of Different EEG Acquisition Systems Concerning Their Suitability for Building a Brain–Computer Interface: Case Studies
Cited by: 34
Author(s): Andreas Pinegger, Selina Wriessnegger, Josef Faller, Gernot Müller-Putz
Software Mentions: 1
Published: about 10 years ago

10.3389/fnins.2020.00818

Exploring the Role of Chemokine Receptor 6 (Ccr6) in the BXD Mouse Model of Gulf War Illness
Cited by: 4
Author(s): Jun Gao, Fuyi Xu, Athena Starlard‐Davenport, Diane B. Miller, James P. O’Callaghan, Byron C. Jones, Lu Lu
Software Mentions: 1
Published: over 6 years ago

10.3389/fnins.2018.00940

The Roles of the Kisspeptin System in the Reproductive Physiology of the Lined Seahorse (Hippocampus erectus), an Ovoviviparous Fish With Male Pregnancy
Cited by: 17
Author(s): Huixian Zhang, Bo Zhang, Geng Qin, Shuisheng Li, Qiang Lin
Software Mentions: 1
Published: almost 8 years ago

10.3389/fonc.2021.655709

Identification of BRCA1:c.5470_5477del as a Founder Mutation in Chinese Ovarian Cancer Patients
Cited by: 4
Author(s): Jun Li, Sile Han, Cuiyun Zhang, Yanlin Luo, Li Wang, Ping Wang, Yi Wang, Qingxin Xia, Xiaoyan Wang, Bing Wei, Jie Ma, Hongle Li, Yongjun Guo
Software Mentions: 1
Published: over 5 years ago

10.3389/fonc.2016.00228

Potential Mechanisms underlying the Protective Effect of Pregnancy against Breast Cancer: A Focus on the IGF Pathway
Cited by: 7
Author(s): Tiffany A. Katz
Software Mentions: 1
Published: about 10 years ago

10.3389/fphar.2020.584595

Exploring the Irish National Folklore Ethnography Database (Dúchas) for Open Data Research on Traditional Medicine Use in Post-Famine Ireland: An Early Example of Citizen Science
Cited by: 4
Author(s): Aaron Koay, Fiona Shannon, Astrid Sasse, Michael Heinrich, Helen Sheridan
Software Mentions: 1
Published: about 6 years ago

10.3389/fphar.2019.00443

Sphingomyelin Synthase 1 (SMS1) Downregulation Is Associated With Sphingolipid Reprogramming and a Worse Prognosis in Melanoma
Cited by: 21
Author(s): Fatima Bilal, Anne Montfort, Julia Gilhodes, Virginie Garcia, Joëlle Riond, Stéphane Carpentier, Thomas Filleron, Céline Colacios, Thierry Levade, Ahmad Daher, Nicolas Meyer, Nathalie Andrieu‐Abadie, Bruno Ségui
Software Mentions: 1
Published: over 7 years ago

10.3389/fphys.2019.00666

Genotype/Phenotype Relationship in a Consanguineal Family With Brugada Syndrome Harboring the R1632C Missense Variant in the SCN5A Gene
Cited by: 11
Author(s): Michelle M. Monasky, Emanuele Micaglio, Giuseppe Ciconte, Sara Benedetti, Chiara Di Resta, Gabriele Vicedomini, Valeria Borrelli, Andrea Ghiroldi, Marco Piccoli, Luigi Anastasia, Vincenzo Santinelli, Maurizio Ferrari, Carlo Pappone
Software Mentions: 1
Published: over 7 years ago

10.3389/fphys.2019.01588

Renal Glomerular Mitochondria Function in Salt-Sensitive Hypertension
Cited by: 16
Author(s): Mark Domondon, Iuliia Polina, Anna B. Nikiforova, Regina Sultanova, Claudia Krüger, Valeria Y. Vasileva, M. V. Fomin, Gyda Beeson, Anna‐Liisa Nieminen, Nancy Smythe, Eduardo N. Maldonado, Krisztián Stadler, Daria V. Ilatovskaya
Software Mentions: 1
Published: almost 7 years ago

10.3389/fphys.2014.00258

Control elements targeting Tgfb3 expression to the palatal epithelium are located intergenically and in introns of the upstream Ift43 gene
Cited by: 11
Author(s): Jamie Lane, Kenji Yumoto, Justin Pisano, Mohamad Azhar, Penny S. Thomas, Vesa Kaartinen
Software Mentions: 1
Published: over 12 years ago

10.3389/fpls.2014.00220

The meiotic transcriptome architecture of plants
Cited by: 12
Author(s): Stefanie Dukowic-Schulze, Changbin Chen
Software Mentions: 1
Published: over 12 years ago

10.3389/fpls.2018.00620

Maximization of Markers Linked in Coupling for Tetraploid Potatoes via Monoparental Haploids
Cited by: 7
Author(s): Annette Bartkiewicz, Friederike Chilla, Diro Terefe-Ayana, Jens Lübeck, Josef Strahwald, Eckhard Tacke, Hans-Reinhard Hofferbert, Marcus Linde, Thomas Debener
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2019.01050

MaizeDIG: Maize Database of Images and Genomes
Cited by: 5
Author(s): Kyoung Tak Cho, John L. Portwood, Jack M. Gardiner, Lisa C. Harper, Carolyn J. Lawrence‐Dill, Iddo Friedberg, Carson M. Andorf
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2017.01894

Long-Distance Transport of Prosystemin Messenger RNA in Tomato
Cited by: 8
Author(s): Haiyan Zhang, Yuanyuan Hu
Software Mentions: 1
Published: about 9 years ago

10.3389/fpls.2019.00403

Loss-of-Function of a Tomato Receptor-Like Kinase Impairs Male Fertility and Induces Parthenocarpic Fruit Set
Cited by: 12
Author(s): Hitomi Takei, Yoshihito Shinozaki, Ryoichi Yano, Sachiko Kashojiya, Michel Hernould, Christian Chevalier, Hiroshi Ezura, Tohru Ariizumi
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2017.00021

Functional Characterization of CYP716 Family P450 Enzymes in Triterpenoid Biosynthesis in Tomato
Cited by: 28
Author(s): Shuhei Yasumoto, Hikaru Seki, Yuko Shimizu, Ery Odette Fukushima, Toshiya Muranaka
Software Mentions: 1
Published: almost 10 years ago

10.3389/fpls.2017.02028

Unravelling Protein-Protein Interaction Networks Linked to Aliphatic and Indole Glucosinolate Biosynthetic Pathways in Arabidopsis
Cited by: 17
Author(s): Sebastian J. Nintemann, Daniel Vik, Julia Svozil, Michael Bak, Katja Baerenfaller, Meike Burow, Barbara Ann Halkier
Software Mentions: 1
Published: almost 9 years ago

10.3389/fpls.2021.644881

An Atlas of Genomic Resources for Studying Rosaceae Fruits and Ornamentals
Cited by: 5
Author(s): Muzi Li, Yuwei Xiao, Stephen M. Mount, Zhongchi Liu
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2017.00836

Genome-Wide Identification of Glyoxalase Genes in Medicago truncatula and Their Expression Profiling in Response to Various Developmental and Environmental Stimuli
Cited by: 23
Author(s): Ajit Ghosh
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2020.01115

Dormant but Active: Chilling Accumulation Modulates the Epigenome and Transcriptome of Prunus avium During Bud Dormancy
Cited by: 20
Author(s): Karin Rothkegel, Paula Sandoval, Esteban Soto, Lissette Ulloa, Aníbal Riveros, Victoria Lillo-Carmona, Javier Cáceres-Molina, Aparecida Marques de Almeida, Claudio Meneses
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2017.02027

Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements
Cited by: 24
Author(s): Zoé Joly‐Lopez, Ewa Forczek, Emilio Vello, Douglas R. Hoen, Akiko Tomita, Thomas E. Bureau
Software Mentions: 1
Published: almost 9 years ago

10.3389/fpls.2016.01046

Genome-Wide Association Study Identifies Candidate Genes for Starch Content Regulation in Maize Kernels
Cited by: 65
Author(s): Na Liu, Yadong Xue, Zhanyong Guo, Weihua Li, Jihua Tang
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2016.01325

Genome-Wide Analysis of the Glutathione S-Transferase Gene Family in Capsella rubella: Identification, Expression, and Biochemical Functions
Cited by: 28
Author(s): Gang He, Chao‐Nan Guan, Qiang-Xin Chen, Xin Gou, Wei Liu, Qing‐Yin Zeng, Ting Lan
Software Mentions: 1
Published: about 10 years ago

10.3389/fpsyt.2013.00133

Association of the Nicotinic Receptor α7 Subunit Gene (CHRNA7) with Schizophrenia and Visual Backward Masking
Cited by: 34
Author(s): George Bakanidze, Maya Roinishvili, Eka Chkonia, W. Kitzrow, Sarina Richter, Konrad Neumann, Michael H. Herzog, Andreas Brand, Imke Puls
Software Mentions: 1
Published: almost 14 years ago

10.3389/fpubh.2019.00228

Comparative Genomic Analysis of the 2016 Vibrio cholerae Outbreak in South Korea
Cited by: 7
Author(s): Seung Min Ha, Mauricio Chalita, Seung‐Jo Yang, Seok-Hwan Yoon, Kyeunghee Cho, Won Keun Seong, Seonghun Hong, Junyoung Kim, Hyo‐Sun Kwak, Jongsik Chun
Software Mentions: 1
Published: about 7 years ago

10.1534/g3.112.003061

Evolutionary History and Genome Organization of DUF1220 Protein Domains
Cited by: 68
Author(s): Majesta O’Bleness, C. Michael Dickens, Laura Dumas, Hildegard Kehrer‐Sawatzki, Gerald J. Wyckoff, James M. Sikela
Software Mentions: 1
Published: about 14 years ago

10.1534/g3.112.004390

A Compendium of Caenorhabditis elegans RNA Binding Proteins Predicts Extensive Regulation at Multiple Levels
Cited by: 30
Author(s): Alex M Tamburino, Seán Ryder, Albertha J.M. Walhout
Software Mentions: 1
Published: almost 14 years ago

10.1534/g3.114.012377

SNPs in Genes Functional in Starch-Sugar Interconversion Associate with Natural Variation of Tuber Starch and Sugar Content of Potato (Solanum tuberosumL.)
Cited by: 53
Author(s): Lena Schreiber, Anna Camila Nader-Nieto, Elske Maria Schönhals, Birgit Walkemeier, Christiane Gebhardt
Software Mentions: 1
Published: about 12 years ago

10.1534/g3.114.013565

Distinct and Predictive Histone Lysine Acetylation Patterns at Promoters, Enhancers, and Gene Bodies
Cited by: 36
Author(s): Nisha Rajagopal, Jason Ernst, Pradipta Ray, Jie Wu, Michael Q. Zhang, M Kellis, Bing Ren
Software Mentions: 1
Published: about 12 years ago

10.1534/g3.114.015545

Evolutionary Consequences of DNA Methylation on the GC Content in Vertebrate Genomes
Cited by: 46
Author(s): Carina F. Mugal, Peter F. Arndt, Lena Holm, Hans Ellegren
Software Mentions: 1
Published: over 11 years ago

10.1534/g3.116.028902

Fine Mapping of the Barley Chromosome 6H Net Form Net Blotch Susceptibility Locus
Cited by: 27
Author(s): Jonathan Richards, Shiaoman Chao, Timothy L. Friesen, Robert Brueggeman
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.116.029645

Large Deletions at the SHOX Locus in the Pseudoautosomal Region Are Associated with Skeletal Atavism in Shetland Ponies
Cited by: 25
Author(s): Nima Rafati, Lisa Andersson, Sofia Mikko, Chungang Feng, Terje Raudsepp, Jessica Pettersson, Jan E. Janečka, Ove Wattle, Adam Ameur, Gunilla Thyreen, John E. Eberth, John Huddleston, Maika Malig, Ernest Bailey, Evan E. Eichler, G. Dalin, Bhanu Chowdary, Leif Andersson, Gabriella Lindgren, Carl-Johan Rubin
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.116.029397

Whole Genome Analysis of 132 ClinicalSaccharomyces cerevisiaeStrains Reveals Extensive Ploidy Variation
Cited by: 123
Author(s): Yuan Zhu, Gavin Sherlock, Dmitri A. Petrov
Software Mentions: 1
Published: over 10 years ago

10.1534/g3.116.033845

Sporadic Gene Loss After Duplication Is Associated with Functional Divergence of Sirtuin Deacetylases Among Candida Yeast Species
Cited by: 8
Author(s): Christopher Rupert, Justin M. H. Heltzel, Derek J. Taylor, Laura N. Rusché
Software Mentions: 1
Published: about 10 years ago

10.1534/g3.117.043109

A Coding Variant in the Gene Bardet-Biedl Syndrome 4 (BBS4) Is Associated with a Novel Form of Canine Progressive Retinal Atrophy
Cited by: 10
Author(s): Tracy Chew, Bianca Haase, R. Bathgate, Cali E. Willet, Maria Kaukonen, Lisa J. Mascord, Hannes Lohi, Claire M. Wade
Software Mentions: 1
Published: over 9 years ago

10.1534/g3.117.300223

Localization of Cdc7 Protein Kinase During DNA Replication in Saccharomyces cerevisiae
Cited by: 6
Author(s): Daniel Rossbach, D. Suzi Bryan, Jay R. Hesselberth, Robert A. Sclafani
Software Mentions: 1
Published: about 9 years ago

10.1534/g3.118.200476

Whole Genome Sequencing,de NovoAssembly and Phenotypic Profiling for the New Budding Yeast SpeciesSaccharomyces jurei
Cited by: 38
Author(s): Samina Naseeb, Haya Alsammar, Timothy A. Burgis, Ian J. Donaldson, Norman Knyazev, Christopher G. Knight, Daniela Delneri
Software Mentions: 1
Published: about 8 years ago

10.1534/g3.118.200916

A Genome Wide Association Study Reveals Markers and Genes Associated with Resistance to Fusarium verticillioides Infection of Seedlings in a Maize Diversity Panel
Cited by: 26
Author(s): Lorenzo Stagnati, Alessandra Lanubile, Luis Fernando Samayoa, Mario Bragalanti, Paola Giorni, Matteo Busconi, James B. Holland, Adriano Marocco
Software Mentions: 1
Published: almost 8 years ago

10.1534/g3.118.200944

Arginine to Glutamine Variant in Olfactomedin Like 3 (OLFML3) Is a Candidate for Severe Goniodysgenesis and Glaucoma in the Border Collie Dog Breed
Cited by: 11
Author(s): Carys Pugh, Lindsay Farrell, Ailsa J Carlisle, Stephen J. Bush, Adam D. Ewing, Violeta Trejo-Reveles, Oswald Matika, Arne de Kloet, Caitlin E. Walsh, Stephen Bishop, James Prendergast, Joe Rainger, Jeffrey J. Schoenebeck, Kim M. Summers
Software Mentions: 1
Published: over 7 years ago

10.1534/g3.119.400170

Phylogenetic Reclassification of Vertebrate Melatonin Receptors To Include Mel1d
Cited by: 7
Author(s): Elsa Denker, Lars O.E. Ebbesson, David G. Hazlerigg, Daniel J. Macqueen
Software Mentions: 1
Published: about 7 years ago

10.1534/g3.119.400788

An Atlas of Transcription Factors Expressed in Male Pupal Terminalia ofDrosophila melanogaster
Cited by: 11
Author(s): Ben J. Vincent, Gavin Rice, Gabriella M. Wong, William J. Glassford, Kayla I. Downs, Jessica L. Shastay, Kenechukwu Charles-Obi, Malini Natarajan, Madelaine Gogol, Julia Zeitlinger, Mark Rebeiz
Software Mentions: 1
Published: almost 7 years ago

10.1534/g3.120.401288

Genome-Wide Discovery of G-Quadruplexes in Wheat: Distribution and Putative Functional Roles
Cited by: 19
Author(s): H Busra Cagirici, Taner Z. Sen
Software Mentions: 1
Published: over 6 years ago

10.1093/g3journal/jkab007

Improved contiguity of the threespine stickleback genome using long-read sequencing
Cited by: 24
Author(s): Shivangi Nath, Daniel Eric Shaw, Michael A. White
Software Mentions: 1
Published: almost 6 years ago

10.1155/2015/230642

Genome-Wide Expression of MicroRNAs Is Regulated by DNA Methylation in Hepatocarcinogenesis
Cited by: 21
Author(s): Jing Shen, Shuang Wang, Abby B. Siegel, Helen Remotti, Qiao Wang, Iryna Sirosh, Regina M. Santella
Software Mentions: 1
Published: almost 12 years ago

10.3390/genes2030397

Delineating Chromosomal Breakpoints in Radiation-Induced Papillary Thyroid Cancer
Cited by: 7
Author(s): Heinz‐Ulrich G. Weier, Yuko Ito, Johnson Kwan, Jan Smida, Jingly F. Weier, Ludwig Hieber, Chunmei Lu, Lars Lehmann, Mei Wang, Haig J. Kassabian, Hui Zeng, Benjamin O’Brien
Software Mentions: 1
Published: over 15 years ago

10.3390/genes4020226

High SINE RNA Expression Correlates with Post-Transcriptional Downregulation of BRCA1
Cited by: 1
Author(s): Maureen Peterson, Vicki L. Chandler, Giovanni Bosco
Software Mentions: 1
Published: over 13 years ago

10.3390/genes5010235

Illuminating the Transcriptome through the Genome
Cited by: 5
Author(s): David J. Elliott
Software Mentions: 1
Published: over 12 years ago

10.3390/genes9080405

Sequencing of Supernumerary Chromosomes of Red Fox and Raccoon Dog Confirms a Non-Random Gene Acquisition by B Chromosomes
Cited by: 22
Author(s): Alex Makunin, Svetlana A. Romanenko, Violetta R. Beklemisheva, Polina L. Perelman, Anna S. Druzhkova, Kristina Petrova, Dmitry Prokopov, Ekaterina Chernyaeva, Jennifer L. Johnson, Anna V. Kukekova, Fengtang Yang, Malcolm A. Ferguson‐Smith, Alexander S. Graphodatsky, Vladimir A. Trifonov
Software Mentions: 1
Published: over 8 years ago

10.3390/genes10030193

Using Openly Accessible Resources to Strengthen Causal Inference in Epigenetic Epidemiology of Neurodevelopment and Mental Health
Cited by: 11
Author(s): Esther Walton, Caroline L Relton, Doretta Caramaschi
Software Mentions: 1
Published: over 7 years ago

10.3390/genes10050385

Whole Genome Sequencing of Giant Schnauzer Dogs with Progressive Retinal Atrophy Establishes NECAP1 as a Novel Candidate Gene for Retinal Degeneration
Cited by: 6
Author(s): Rebekkah J. Hitti, James A. C. Oliver, Ellen Schofield, Anina Bauer, Maria Kaukonen, Oliver P. Forman, Tosso Leeb, Hannes Lohi, Louise M. Burmeister, David R. Sargan, Cathryn S. Mellersh
Software Mentions: 1
Published: over 7 years ago

10.3390/genes10050345

Integrative rDNAomics—Importance of the Oldest Repetitive Fraction of the Eukaryote Genome
Cited by: 43
Author(s): Radka Symonová
Software Mentions: 1
Published: over 7 years ago

10.3390/genes11121456

Technologies for Pharmacogenomics: A Review
Cited by: 28
Author(s): Maaike van der Lee, Marjolein Kriek, Henk‐Jan Guchelaar, Jesse J. Swen
Software Mentions: 1
Published: almost 6 years ago

10.1093/gigascience/giaa018

Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism
Cited by: 10
Author(s): Jin Zhang, Rongbin Hu, Avinash Sreedasyam, Travis M. Garcia, Anna Lipzen, Mei Wang, Pradeep Yerramsetty, Degao Liu, Vivian Ng, Jeremy Schmutz, John C. Cushman, Anne M. Borland, Asher Pasha, Nicholas J. Provart, Jay Chen, Wellington Muchero, Gerald A. Tuskan, Xiaohan Yang
Software Mentions: 1
Published: over 6 years ago

10.1016/j.heliyon.2018.e00647

Comparative genomic analysis of eutherian adiponectin genes
Cited by: 4
Author(s): Marko Premzl
Software Mentions: 1
Published: over 8 years ago

10.1186/s13053-017-0082-9

Exome sequencing characterizes the somatic mutation spectrum of early serrated lesions in a patient with serrated polyposis syndrome (SPS)
Cited by: 6
Author(s): Sukanya Horpaopan, Jutta Kirfel, Sophia Peters, Michael Kloth, Robert Hüneburg, Janine Altmüller, Dmitriy Drichel, Margarete Odenthal, Glen Kristiansen, Christian Strassburg, Jacob Nattermann, Per Hoffmann, Peter Nürnberg, Reinhard Büttner, Holger Thiele, Philip Kahl, Isabel Spier, Stefan Aretz
Software Mentions: 1
Published: almost 9 years ago

10.1186/s41065-016-0022-0

Psychomotor retardation with a 1q42.11–q42.12 deletion
Cited by: 4
Author(s): Jialing He, Yuan Xie, Shu Kong, Wenjun Qiu, Xiaoman Wang, Ding Wang, Xiaofang Sun, Deming Sun
Software Mentions: 1
Published: over 9 years ago

10.1038/s41439-020-00127-5

A reference catalog of DNA palindromes in the human genome and their variations in 1000 Genomes
Cited by: 10
Author(s): Madhavi K. Ganapathiraju, Sandeep Subramanian, Srilakshmi Chaparala, Kalyani B. Karunakaran
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12979-015-0045-9

Decline of FOXN1 gene expression in human thymus correlates with age: possible epigenetic regulation
Cited by: 21
Author(s): Marlon M. Reis, Krisztián Csomós, Luciene Paschoal Braga Dias, Zsolt Prodán, Tamás Szerafin, Wilson Savino, László Takács
Software Mentions: 1
Published: about 11 years ago

10.1111/j.1365-2583.2006.00679.x

Nuclear receptors of the honey bee: annotation and expression in the adult brain
Cited by: 72
Author(s): Rodrigo Velarde, Gene E. Robinson, Susan E. Fahrbach
Software Mentions: 1
Published: about 20 years ago

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