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10.1371/journal.pone.0035839

The RIP140 Gene Is a Transcriptional Target of E2F1
Cited by: 22
Author(s): Aurélie Docquier, Patrick Augereau, Marion Lapierre, Pierre-Olivier Harmand, Éric Badia, Jean-Sébastien Annicotte, Lluís Fajas, Vincent Cavaillès
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0165559

Genetic and Epigenetic Regulation of TOX3 Expression in Breast Cancer
Cited by: 23
Author(s): Yoo-Jeong Han, Jing Zhang, Yonglan Zheng, Dezheng Huo, Olufunmilayo I. Olopade
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0019174

Ascl1/Mash1 Is a Novel Target of Gli2 during Gli2-Induced Neurogenesis in P19 EC Cells
Cited by: 47
Author(s): Anastassia Voronova, Fischer Anna, Ryan Tj, Ashraf Al Madhoun, Ilona S. Skerjanc
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0019891

Physical Confirmation and Mapping of Overlapping Rat Mammary Carcinoma Susceptibility QTLs, Mcs2 and Mcs6
Cited by: 8
Author(s): Jennifer Sanders, Jill D. Haag, David J. Samuelson
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0105382

Copy Number Variation Analysis on a Non-Hodgkin Lymphoma Case-Control Study Identifies an 11q25 Duplication Associated with Diffuse Large B-Cell Lymphoma
Cited by: 17
Author(s): Lucía Conde, Jacques Riby, Jianqing Zhang, Paige M. Bracci, Christine F. Skibola
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0136749

Genome-Wide Scan for Visceral Leishmaniasis in Mixed-Breed Dogs Identifies Candidate Genes Involved in T Helper Cells and Macrophage Signaling
Cited by: 19
Author(s): Yuri Tani Utsunomiya, Érica S. Ribeiro, Amanda Pífano Neto Quintal, Juliano Rodrigues Sangalli, Valquiria R. Gazola, Henrique Borges de Paula, Cristiana T. Trinconi, Valéria Marçal Felix de Lima, S. H. V. Perri, Jeremy F. Taylor, Robert D. Schnabel, Tad S. Sonstegard, José Fernando Garcia, Cáris Maroni Nunes
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0000643

The Cis-regulatory Logic of the Mammalian Photoreceptor Transcriptional Network
Cited by: 136
Author(s): Timothy H.-C. Hsiau, Claudiu Diaconu, Connie A. Myers, Jongwoo Lee, Constance L. Cepko, Joseph C. Corbo
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0143212

GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana
Cited by: 23
Author(s): Johanna A. Bac-Molenaar, E.F. Fradin, Juriaan Rienstra, D. Vreugdenhil, Joost J. B. Keurentjes
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0018969

Variation in Array Size, Monomer Composition and Expression of the Macrosatellite DXZ4
Cited by: 19
Author(s): Deanna C. Tremblay, Shawn C. Moseley, Brian P. Chadwick
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0075344

Integration Profile and Safety of an Adenovirus Hybrid-Vector Utilizing Hyperactive Sleeping Beauty Transposase for Somatic Integration
Cited by: 33
Author(s): Wenli Zhang, Martin Mück-Häusl, Jichang Wang, Chuanbo Sun, Maren Gebbing, Csaba Miskey, Zoltán Ivics, Zsuzsanna Izsvák, Anja Ehrhardt
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0129811

A Novel Locus for Ectodermal Dysplasia of Hair, Nail and Skin Pigmentation Anomalies Maps to Chromosome 18p11.32-p11.31
Cited by: 2
Author(s): Rabia Habib, Muhammad Ansar, Manuel Mattheisen, Muhammad Shahid, Ghazanfar Ali, Wasim Ahmad, Regina C. Betz
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0105723

Effects of GWAS-Associated Genetic Variants on lncRNAs within IBD and T1D Candidate Loci
Cited by: 69
Author(s): Aashiq H. Mirza, Simranjeet Kaur, Caroline Brorsson, Flemming Pociot
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0108652

Genome-Wide Mapping of Yeast Histone Chaperone Anti-Silencing Function 1 Reveals Its Role in Condensin Binding with Chromatin
Cited by: 7
Author(s): Pooran Singh Dewari, Poonam Bhargava
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0153333

Neofunctionalization of Chromoplast Specific Lycopene Beta Cyclase Gene (CYC-B) in Tomato Clade
Cited by: 13
Author(s): Vijee Mohan, Arun K. Pandey, Yellamaraju Sreelakshmi, Rameshwar Sharma
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0000658

A Unique Role for Nonmuscle Myosin Heavy Chain IIA in Regulation of Epithelial Apical Junctions
Cited by: 144
Author(s): Andrei I. Ivanov, Moshe Bachar, Brian A. Babbin, Robert S. Adelstein, Asma Nusrat, Charles A. Parkos
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0207984

Leucine rich repeat kinase 2 (LRRK2) GLY2019SER mutation is absent in a second cohort of Nigerian Africans with Parkinson disease
Cited by: 16
Author(s): Njideka Okubadejo, Mie Rizig, Oluwadamilola O. Ojo, Hallgeir Jonvik, Olajumoke Oshinaike, Emmeline Brown, Henry Houlden
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0046642

A Fish-Specific Transposable Element Shapes the Repertoire of p53 Target Genes in Zebrafish
Cited by: 17
Author(s): Lucia Micale, Maria Nicla Loviglio, Marta Manzoni, Carmela Fusco, Bartolomeo Augello, Eugenia Migliavacca, Grazia Cotugno, Eugenio Monti, Giuseppe Borsani, Alexandre Reymond, Giuseppe Merla
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0164555

HOXB4 Gene Expression Is Regulated by CDX2 in Intestinal Epithelial Cells
Cited by: 1
Author(s): Stine Jørgensen, Mehmet Coskun, Keld Mikkelsen Homburg, Ole Birger Pedersen, Jesper T. Troelsen
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0197322

Tissue inhibitor of metalloproteinases 1 enhances rod survival in the rd1 mouse retina
Cited by: 8
Author(s): Hwa Sun Kim, Andrew Vargas, Yun Sung Eom, Justin Li, Kyra Yamamoto, Cheryl M. Craft, Eun-Jin Lee
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0107103

QTL Analysis and Candidate Gene Mapping for the Polyphenol Content in Cider Apple
Cited by: 32
Author(s): Cindy Verdu, Sylvain Guyot, Nicolas Childebrand, Muriel Bahut, Jean‐Marc Celton, Sylvain Gaillard, Pauline Lasserre-Zuber, Michela Troggio, David Guilet, François Laurens
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0020621

Cloning and Characterization of a Putative TAC1 Ortholog Associated with Leaf Angle in Maize (Zea mays L.)
Cited by: 98
Author(s): Lixia Ku, Xiaomin Wei, Shaofang Zhang, Jun Zhang, Shulei Guo, Yanhui Chen
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0200854

Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato
Cited by: 61
Author(s): Peter Amoako Ofori, Ayaka Mizuno, Mami Suzuki, Enrico Martinoia, Stefan Reuscher, Koh Aoki, Daisuke Shibata, Shungo Otagaki, Shogo Matsumoto, Katsuhiro Shiratake
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0128348

Analysis of Low Frequency Protein Truncating Stop-Codon Variants and Fasting Concentration of Growth Hormone
Cited by: 4
Author(s): Erik Hallengren, Peter Almgren, Gunnar Engström, Margaretha Persson, Olle Melander
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0035660

The Cobalamin-Binding Protein in Zebrafish Is an Intermediate between the Three Cobalamin-Binding Proteins in Human
Cited by: 23
Author(s): Eva Greibe, Sergey N. Fedosov, Ebba Nexö
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0047760

The Apolipoprotein E (APOE) Gene Appears Functionally Monomorphic in Chimpanzees (Pan troglodytes)
Cited by: 56
Author(s): Annick M. McIntosh, Calvin Bennett, Dara Dickson, Stephanie F. Anestis, David P. Watts, Timothy H. Webster, M. Babette Fontenot, Brenda J. Bradley
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0039632

Non-Random Integration of the HPV Genome in Cervical Cancer
Cited by: 113
Author(s): Martina Schmitz, Corina Driesch, Lars Jansen, Ingo B. Runnebaum, Matthias Dürst
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0117158

Two Novel Mutations in Myosin Binding Protein C Slow Causing Distal Arthrogryposis Type 2 in Two Large Han Chinese Families May Suggest Important Functional Role of Immunoglobulin Domain C2
Cited by: 17
Author(s): Xuefu Li, Bomeng Zhong, Han Wang, Ning Zhao, Wei Liu, Shaohua Yu, Yawen Wang, Yongping Lu, Hong Wang, Jianxin Li, Miao Jiang
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0204312

Characterization of zebrafish (Danio rerio) muscle ankyrin repeat proteins reveals their conserved response to endurance exercise
Cited by: 11
Author(s): S. Bošković, Rubén Marín-Juez, Jovana Jasnic-Savovic, Sven Reischauer, Hadil El-Sammak, Ana Kojic, Georgine Faulkner, Dragica Radojković, Didier Y. R. Stainier, Snežana Kojić
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0023087

Copy Number Variation across European Populations
Cited by: 26
Author(s): Wanting Chen, Caroline Hayward, Alan F. Wright, Andrew A. Hicks, Véronique Vitart, Sara Knott, Sarah H. Wild, Peter P. Pramstaller, James F. Wilson, Igor Rudan, David J. Porteous
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0056195

Bridging Cancer Biology with the Clinic: Relative Expression of a GRHL2-Mediated Gene-Set Pair Predicts Breast Cancer Metastasis
Cited by: 37
Author(s): Xinan Yang, Prabhakaran Vasudevan, Vishwas Parekh, Aleks Penev, John M. Cunningham
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0242737

Identification of the enzymes responsible for m2,2G and acp3U formation on cytosolic tRNA from insects and plants
Cited by: 3
Author(s): Holly M. Funk, Ruoxia Zhao, Maggie Thomas, Sarah M. Spigelmyer, Nichlas J. Sebree, Regan O. Bales, Jamison B. Burchett, Justen B. Mamaril, Patrick A. Limbach, Michael P. Guy
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0164359

A Molecular Genetic Basis Explaining Altered Bacterial Behavior in Space
Cited by: 55
Author(s): Luis Zea, Nripesh Prasad, Shawn Levy, Louis S. Stodieck, Angela L. Jones, Shristi Shrestha, David M. Klaus
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0045300

Identification of POMC Exonic Variants Associated with Substance Dependence and Body Mass Index
Cited by: 13
Author(s): Fan Wang, Joel Gelernter, Henry R. Kranzler, Huiping Zhang
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0169752

Mechanical Compression Effects on the Secretion of vWF and IL-8 by Cultured Human Vein Endothelium
Cited by: 7
Author(s): Dar Weiss, Sarit Avraham, Ruth Guttlieb, Lee Gasner, Alina Lotman, Oren M. Rotman, Shmuel Einav
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0014276

Molecular Evolution and Functional Divergence of the Cytochrome P450 3 (CYP3) Family in Actinopterygii (Ray-Finned Fish)
Cited by: 27
Author(s): Jun Yan, Zhonghua Cai
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0187426

A causal mediation model of ischemia reperfusion injury in the retina
Cited by: 1
Author(s): Maha Soliman, Kalina Andreeva, Olfa Nasraoui, Nigel G. F. Cooper
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0065016

N-Linked Glycosylation Supports Cross-Talk between Receptor Tyrosine Kinases and Androgen Receptor
Cited by: 40
Author(s): Harri M. Itkonen, Ian G. Mills
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0019832

The First Sequenced Carnivore Genome Shows Complex Host-Endogenous Retrovirus Relationships
Cited by: 29
Author(s): Álvaro Martínez Barrio, Marie Ekerljung, Patric Jern, Farid Benachenhou, Göran Sperber, Erik Bongcam‐Rudloff, Jonas Blomberg, Gerhard Andersson
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0018129

Computational Detection and Functional Analysis of Human Tissue-Specific A-to-I RNA Editing
Cited by: 17
Author(s): Tao He, Qiong Wang, Guihai Feng, Ya-Ou Hu, Li Wang, Yumin Wang
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0214145

Evolution of Deeper Rooting 1-like homoeologs in wheat entails the C-terminus mutations as well as gain and loss of auxin response elements
Cited by: 33
Author(s): Almas Ashraf, Obaid Ur Rehman, Shumaila Muzammil, Jens Léon, Ali Ahmed Naz, Fatima Rasool, Ghulam Muhammad Ali, Yusuf Zafar, Muhammad Ramzan Khan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0010435

Flavin-Dependent Monooxygenases as a Detoxification Mechanism in Insects: New Insights from the Arctiids (Lepidoptera)
Cited by: 52
Author(s): Sven Sehlmeyer, Linzhu Wang, Dorothee Langel, David G. Heckel, Hoda Mohagheghi, Georg Petschenka, Dietrich Ober
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0177119

EnHERV: Enrichment analysis of specific human endogenous retrovirus patterns and their neighboring genes
Cited by: 18
Author(s): Pumipat Tongyoo, Yingyos Avihingsanon, Santhitham Prom-On, Apiwat Mutirangura, Wuttichai Mhuantong, Nattiya Hirankarn
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0148710

A Glance at Recombination Hotspots in the Domestic Cat
Cited by: 0
Author(s): Hasan Alhaddad, Chi Zhang, Bruce Rannala, Leslie A. Lyons
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0067762

Six1 Regulates MyoD Expression in Adult Muscle Progenitor Cells
Cited by: 36
Author(s): Yubing Liu, Imane Chakroun, Dongfang Yang, Ellias Horner, Junquan Liang, Arif Aziz, Alphonse Chu, Yves De Repentigny, F. Jeffrey Dilworth, Rashmi Kothary, Alexandre Blais
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0071231

Two Variants of the C-Reactive Protein Gene Are Associated with Risk of Pre-Eclampsia in an American Indian Population
Cited by: 21
Author(s): Lyle G. Best, Richa Saxena, Cindy M. Anderson, Michael R. Barnes, Hákon Hákonarson, Gilbert Falcon, Candelaria Martín, Berta Almoguera Castillo, Ananth Karumanchi, Kylie Keplin, Nichole Pearson, Felicia Lamb, Shellee Bercier, Brendan J. Keating
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0030049

Differential Expression Profile and Genetic Variants of MicroRNAs Sequences in Breast Cancer Patients
Cited by: 73
Author(s): Ali A. Alshatwi, Gowhar Shafi, Tarique N. Hasan, Naveed Ahmed Syed, Amal A. Al-Hazzani, Mohammed A. Alsaif, Abdulaziz Alsaif
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0116318

Generation and Characterization of Antibodies against Asian Elephant (Elephas maximus) IgG, IgM, and IgA
Cited by: 17
Author(s): Alan F. Humphreys, Jie Tan, RongSheng Peng, Susan M. Benton, Xiang Qin, Kim C. Worley, Rose Mikulski, Dar‐Chone Chow, Timothy Palzkill, Paul D. Ling
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0163135

Enhancement of the Knowledge on Fungal Communities in Directly Brined Aloreña de Málaga Green Olive Fermentations by Metabarcoding Analysis
Cited by: 33
Author(s): Francisco Noé Arroyo‐López, M.A. Ruiz-Bellido, Verónica Romero‐Gil, Miguel Montes-Borrego, Blanca B. Landa
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0150974

Global Metabolic Reconstruction and Metabolic Gene Evolution in the Cattle Genome
Cited by: 5
Author(s): Woonsu Kim, Hyesun Park, Seongwon Seo
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0092203

Sequencing and Characterisation of Rearrangements in Three S. pastorianus Strains Reveals the Presence of Chimeric Genes and Gives Evidence of Breakpoint Reuse
Cited by: 64
Author(s): Sarah Hewitt, Ian J. Donaldson, Simon C. Lovell, Daniela Delneri
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0080326

Performance of Polygenic Scores for Predicting Phobic Anxiety
Cited by: 25
Author(s): Stefan Walter, M. Maria Glymour, Karestan C. Koenen, Liming Liang, Eric J. Tchetgen Tchetgen, Marilyn C. Cornelis, Shun Chiao Chang, Eric B. Rimm, Ichiro Kawachi, Laura D. Kubzansky
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0126475

HSA21 Single-Minded 2 (Sim2) Binding Sites Co-Localize with Super-Enhancers and Pioneer Transcription Factors in Pluripotent Mouse ES Cells
Cited by: 8
Author(s): Audrey Letourneau, Gilda Cobellis, Alexandre Fort, Federico Santoni, Marco Garieri, Emilie Falconnet, Pascale Ribaux, Anne Vannier, Michel Guipponi, Piero Carninci, Christelle Borel, Stylianos E. Antonarakis
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0042424

Functional and Molecular Characterization of the Role of CTCF in Human Embryonic Stem Cell Biology
Cited by: 21
Author(s): Sri Kripa Balakrishnan, Michael Witcher, Travis Berggren, Beverly M. Emerson
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0185286

The riddle of mitochondrial alkaline/neutral invertases: A novel Arabidopsis isoform mainly present in reproductive tissues and involved in root ROS production
Cited by: 11
Author(s): Marina Battaglia, María Victoria Martin, Leandra Lechner, Giselle Martínez-Noël, Graciela L. Salerno
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0184455

Incidence of pancreatic cancer is dramatically increased by a high fat, high calorie diet in KrasG12D mice
Cited by: 94
Author(s): Hui-Hua Chang, Aune Moro, Kazuki Takakura, Hsin-Yuan Su, Allen Mo, Masayoshi Nakanishi, Richard T. Waldron, Samuel W. French, David W. Dawson, Oscar J. Hines, Gang Li, Vay Liang W. Go, James Sinnett‐Smith, Stephen J. Pandol, Aurelia Lugea, Anna S. Gukovskaya, Michael O. Duff, Daniel W. Rosenberg, Enrique Rozengurt, Guido Eibl
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0059994

Dissecting the Dynamics of HIV-1 Protein Sequence Diversity
Cited by: 14
Author(s): Yongli Hu, Paul Thiam Joo Tan, Tin Wee Tan, J. Thomas August, Mohammad Asif Khan
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0066799

Role of Helicase-Like Transcription Factor (Hltf) in the G2/M Transition and Apoptosis in Brain
Cited by: 24
Author(s): Rebecca A. Helmer, Oded Foreman, Janet Dertien, Marlyn Panchoo, Suhani M. Bhakta, Beverly S. Chilton
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0140436

Two Independent Mutations in ADAMTS17 Are Associated with Primary Open Angle Glaucoma in the Basset Hound and Basset Fauve de Bretagne Breeds of Dog
Cited by: 30
Author(s): James A. C. Oliver, Oliver P. Forman, Louise Pettitt, Cathryn S. Mellersh
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0121672

Characterization of the Avian Trojan Gene Family Reveals Contrasting Evolutionary Constraints
Cited by: 3
Author(s): Petar Petrov, Riikka Syrjänen, Jacqueline Smith, Maria Weronika Gutowska, Toshihiro Uchida, Olli Vainio, David W. Burt
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0019091

The Genetic Effect of Copy Number Variations on the Risk of Type 2 Diabetes in a Korean Population
Cited by: 20
Author(s): Joon Seol Bae, Hyun Sub Cheong, Ji Eun Kim, Byung Lae Park, Jeonghyun Kim, Tae Joon Park, Jason Yongha Kim, Charisse Flerida A. Pasaje, Jin Sol Lee, Yun-Ju Park, Miey Park, Chan Park, Insong Koh, Yeun‐Jun Chung, Jong‐Young Lee, Hyoung Doo Shin
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0008978

Expression of Cartilage Developmental Genes in Hoxc8- and Hoxd4-Transgenic Mice
Cited by: 27
Author(s): Claudia Krüger, Claudia Kappen
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0150639

Initiation of cyp26a1 Expression in the Zebrafish Anterior Neural Plate by a Novel Cis-Acting Element
Cited by: 1
Author(s): Chunhong Chen, Aline Stedman, Emmanuelle Havis, Isabelle Anselme, Daria Onichtchouk, François Giudicelli, Sylvie Schneider‐Maunoury
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0139656

Prioritizing Clinically Relevant Copy Number Variation from Genetic Interactions and Gene Function Data
Cited by: 8
Author(s): Justin Foong, Marta Gı̂rdea, James Stavropoulos, Michael Brudno
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0094306

The Association of Myosin IB with Actin Waves in Dictyostelium Requires Both the Plasma Membrane-Binding Site and Actin-Binding Region in the Myosin Tail
Cited by: 27
Author(s): Hanna Brzeska, Kevin J. Pridham, Godefroy Chery, Margaret A. Titus, Edward D. Korn
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0238467

Evaluation of molecular inversion probe versus TruSeq® custom methods for targeted next-generation sequencing
Cited by: 16
Author(s): Rowida Almomani, Margherita Marchi, Maurice Sopacua, Patrick Lindsey, Erika Salvi, Bart de Koning, Silvia Santoro, Stefania Magri, Hubert J.M. Smeets, Filippo Martinelli Boneschi, Rayaz A. Malik, Dan Ziegler, Janneke G. J. Hoeijmakers, Gidon J. Bönhof, Sulayman D. Dib‐Hajj, Stephen G. Waxman, Ingemar S.J. Merkies, Giuseppe Lauria, Catharina G. Faber, Monique M. Gerrits
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0056379

Identity-by-Descent Mapping to Detect Rare Variants Conferring Susceptibility to Multiple Sclerosis
Cited by: 17
Author(s): Rui Lin, Jac Charlesworth, Jim Stankovich, Victoria M. Perreau, Matthew A. Brown, Bruce Taylor
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0136866

A Gβ protein and the TupA Co-Regulator Bind to Protein Kinase A Tpk2 to Act as Antagonistic Molecular Switches of Fungal Morphological Changes
Cited by: 1
Author(s): Thamarai K. Janganan, Gongyou Chen, Daliang Chen, João F. Menino, Fernando Rodrigues, M. Inês Borges-Walmsley, Adrian R. Walmsley
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0113829

A Mutation in cnot8, Component of the Ccr4-Not Complex Regulating Transcript Stability, Affects Expression Levels of Developmental Regulators and Reveals a Role of Fgf3 in Development of Caudal Hypothalamic Dopaminergic Neurons
Cited by: 14
Author(s): Peter J. Koch, Heiko Löhr, Wolfgang Driever
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0112984

Function-Triggering Antibodies to the Adhesion Molecule L1 Enhance Recovery after Injury of the Adult Mouse Femoral Nerve
Cited by: 10
Author(s): Daria Guseva, Gabriele Loers, Melitta Schachner
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0032958

The Role of Inflammatory Pathway Genetic Variation on Maternal Metabolic Phenotypes during Pregnancy
Cited by: 20
Author(s): Margrit Urbanek, M. Geoffrey Hayes, Hoon Lee, Rachel M. Freathy, Lynn P. Lowe, Christine M. Ackerman, Nadereh Jafari, Alan R. Dyer, Nancy J. Cox, David B. Dunger, Andrew T. Hattersley, Boyd E. Metzger, William L. Lowe
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0079922

DNA Sequences at a Glance
Cited by: 13
Author(s): Armando J. Pinho, Sara P. Garcia, Diogo Pratas, Paulo J. S. G. Ferreira
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0002896

Evolutionary Origins and Functions of the Carotenoid Biosynthetic Pathway in Marine Diatoms
Cited by: 125
Author(s): Sacha Coesel, Miroslav Oborník, João Varela, Angela Falciatore, Chris Bowler
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0077700

Combining Different mRNA Capture Methods to Analyze the Transcriptome: Analysis of the Xenopus laevis Transcriptome
Cited by: 24
Author(s): Michael D. Blower, Ashwini Jambhekar, Dianne S. Schwarz, James A. Toombs
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0061920

Ultra-Rare Mutation in Long-Range Enhancer Predisposes to Thyroid Carcinoma with High Penetrance
Cited by: 32
Author(s): Hao He, Wei Li, Dayong Wu, Rebecca Nagy, Sandya Liyanarachchi, Keiko Akagi, Jarosław Jendrzejewski, Hong Jiao, Kevin W. Hoag, Bernard Wen, Mukund Srinivas, Gavisha Waidyaratne, Rui Wang, Anna Wójcicka, Ilene Lattimer, Elżbieta Stachlewska, Małgorzata Czetwertyńska, Joanna Długosińska, Wojciech Gierlikowski, Rafał Płoski, Marek Krawczyk, Krystian Jażdżewski, Juha Kere, David E. Symer, Victor X. Jin, Qianben Wang, Albert de la Chapelle
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0212266

Genomic structure of a crossbred Landrace pig population
Cited by: 11
Author(s): Letícia Borges Joaquim, T.C.S. Chud, Jorge Augusto Petroli Marchesi, Rodrigo Pelicioni Savegnago, Marcos Eli Buzanskas, Ricardo Zanella, Mauricio Egídio Cantão, J. O. Peixoto, Mônica Corrêa Ledur, Renato Irgang, Danísio Prado Munari
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0026477

Golgi Apparatus-Localized Synaptotagmin 2 Is Required for Unconventional Secretion in Arabidopsis
Cited by: 50
Author(s): Haiyan Zhang, Liang Zhang, Bin Gao, Fan Hai, Jingbo Jin, Miguel A. Botella, Liwen Jiang, Jinxing Lin
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0103967

Visualizing Late Insect Embryogenesis: Extraembryonic and Mesodermal Enhancer Trap Expression in the Beetle Tribolium castaneum
Cited by: 16
Author(s): Stefan Koelzer, Yvonne Kölsch, Kristen A. Panfilio
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0053767

t(8;9)(p22;p24)/PCM1-JAK2 Activates SOCS2 and SOCS3 via STAT5
Cited by: 40
Author(s): Stefan Ehrentraut, Stefan Nagel, Michaela Scherr, Björn Schneider, Hilmar Quentmeier, Robert Geffers, Maren Kaufmann, Corinna Meyer, Monika Prochorec‐Sobieszek, Rhett P. Ketterling, Ryan A. Knudson, Andrew L. Feldman, Marshall E. Kadin, Hans G. Drexler, Roderick A.F. MacLeod
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0024480

Late Replicating Domains Are Highly Recombining in Females but Have Low Male Recombination Rates: Implications for Isochore Evolution
Cited by: 5
Author(s): Catherine Pink, Laurence D. Hurst
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0000702

Mammalian Comparative Sequence Analysis of the Agrp Locus
Cited by: 5
Author(s): Christopher B. Kaelin, Gregory M. Cooper, Arend Sidow, Gregory S. Barsh
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0011595

Telomeric NAP1L4 and OSBPL5 of the KCNQ1 Cluster, and the DECORIN Gene Are Not Imprinted in Human Trophoblast Stem Cells
Cited by: 13
Author(s): Jennifer M. Frost, Ramya Udayashankar, H. D. M. Moore, Gudrun E. Moore
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0015246

Microarray-Based Maps of Copy-Number Variant Regions in European and Sub-Saharan Populations
Cited by: 22
Author(s): Christian Vogler, Leo Gschwind, Benno Röthlisberger, Andreas Huber, Isabel Filges, Peter Miny, Bianca Auschra, Attila Steták, Philippe Demougin, Vanja Vukojević, Iris‐Tatjana Kolassa, Thomas Elbert, Dominique J.‐F. de Quervain, Andreas Papassotiropoulos
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0036337

Alternative Splicing of Spg7, a Gene Involved in Hereditary Spastic Paraplegia, Encodes a Variant of Paraplegin Targeted to the Endoplasmic Reticulum
Cited by: 8
Author(s): Giuseppe Mancuso, Esther Barth, Pietro Crivello, Elena I. Rugarli
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0152834

Association of MicroRNA-196a2 Variant with Response to Short-Acting β2-Agonist in COPD: An Egyptian Pilot Study
Cited by: 31
Author(s): Manal S. Fawzy, Mohammad Hussein, Eman Z. Abdelaziz, Hussain A. Yamany, Hussein Ismail, Eman A. Toraih
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0058931

A New Genetic Linkage Map of the Zygomycete Fungus Phycomyces blakesleeanus
Cited by: 22
Author(s): Suman Chaudhary, Silvia Polaino, Viplendra P. S. Shakya, Alexander Idnurm
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0005352

Conservation and Variability of West Nile Virus Proteins
Cited by: 24
Author(s): Qi Ying Koo, Mohammad Asif Khan, Keunok Jung, Shweta Ramdas, Olivo Miotto, Tin Wee Tan, Vladimir Brusic, Jérôme Salmon, J. Thomas August
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0077492

Integrated Analysis of Dysregulated lncRNA Expression in Fetal Cardiac Tissues with Ventricular Septal Defect
Cited by: 35
Author(s): Guixian Song, Yahui Shen, Jingai Zhu, Hailang Liu, Ming Liu, Yuechun Shen, Shasha Zhu, Xiangqing Kong, Zhangbin Yu, Lei Qian
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0038907

Characterization of Novel Paternal ncRNAs at the Plagl1 Locus, Including Hymai, Predicted to Interact with Regulators of Active Chromatin
Cited by: 21
Author(s): Isabel Iglesias-Platas, Alex Martín‐Trujillo, Davide Cirillo, Franck Court, Amy Guillaumet-Adkins, Cristina Camprubí, Déborah Bourc’his, Kenichiro Hata, Robert Feil, Gian Gaetano Tartaglia, Philippe Arnaud, David Gabriel Monk
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0074159

Human PPP1R26P1 Functions as cis-Repressive Element in Mouse Rb1
Cited by: 4
Author(s): Laura Steenpaß, Deniz Kanber, Michaela Hiber, Karin Buiting, Bernhard Horsthemke, Dietmar Lohmann
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0010907

Characteristics of Transposable Element Exonization within Human and Mouse
Cited by: 64
Author(s): Noa Sela, Britta Mersch, Agnes Hotz‐Wagenblatt, Gil Ast
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0184445

SWI/SNF Infobase—An exclusive information portal for SWI/SNF remodeling complex subunits
Cited by: 18
Author(s): M. Udayakumar, S Alagu Sankareswaran, R N Arun Goutham, Suma Mohan
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0001740

Architecture of an Antagonistic Tree/Fungus Network: The Asymmetric Influence of Past Evolutionary History
Cited by: 74
Author(s): Corinne Vacher, Dominique Piou, Marie‐Laure Desprez‐Loustau
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0111777

Regulation of RAB5C Is Important for the Growth Inhibitory Effects of MiR-509 in Human Precursor-B Acute Lymphoblastic Leukemia
Cited by: 25
Author(s): Yee Sun Tan, Minjung Kim, Tami J. Kingsbury, Curt I. Civin, Wenli Cheng
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0037952

Genome-Wide Characterization of Menin-Dependent H3K4me3 Reveals a Specific Role for Menin in the Regulation of Genes Implicated in MEN1-Like Tumors
Cited by: 47
Author(s): Sunita K. Agarwal, Raja Jothi
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0015779

A Common CNR1 (Cannabinoid Receptor 1) Haplotype Attenuates the Decrease in HDL Cholesterol That Typically Accompanies Weight Gain
Cited by: 14
Author(s): QiPing Feng, Lan Jiang, Richard L. Berg, Melissa Antonik, Erin Mackinney, Jennifer Gunnell-Santoro, Catherine A. McCarty, Russell A. Wilke
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0159114

Whole Genome Pathway Analysis Identifies an Association of Cadmium Response Gene Loss with Copy Number Variation in Mutant p53 Bearing Uterine Endometrial Carcinomas
Cited by: 7
Author(s): Joe R. Delaney, Dwayne G. Stupack
Software Mentions: 1
Published: over 8 years ago

10.1093/database/baz018

FairBase: a comprehensive database of fungal A-to-I RNA editing
Cited by: 7
Author(s): Jinding Liu, Dongbo Wang, Yin-Na Su, Kun Lang, Rongjing Duan, Yufeng Wu, Fei Ma, Shuiqing Huang
Software Mentions: 1
Published: almost 6 years ago

10.1093/database/bau091

An online system for metabolic network analysis
Cited by: 7
Author(s): A. Ercüment Çiçek, Xin Qi, Ali Çakmak, Stephen R. Johnson, Han Xu, Sami Alshalwi, Z. Meral Özsoyoğlu, Gültekin Özsoyoğlu
Software Mentions: 1
Published: about 10 years ago

10.1093/database/bau062

UCbase 2.0: ultraconserved sequences database (2014 update)
Cited by: 18
Author(s): Vincenzo Lomonaco, Riccardo Martoglia, Federica Mandreoli, Laura Anderlucci, Warren Emmett, Silvio Bicciato, Cristian Taccioli
Software Mentions: 1
Published: over 10 years ago

10.1016/j.ydbio.2010.07.007

Pax2 coordinates epithelial morphogenesis and cell fate in the inner ear
Cited by: 61
Author(s): Nicolas Christophorou, Michael Mende, Laura Lleras-Forero, Timothy Grocott, Andrea Streit
Software Mentions: 1
Published: about 14 years ago

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