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10.1371/journal.pone.0126403

The Mechanism of Environmental Endocrine Disruptors (DEHP) Induces Epigenetic Transgenerational Inheritance of Cryptorchidism
Cited by: 44
Author(s): Jinjun Chen, Shengde Wu, Sheng Wen, Lianju Shen, Jinpu Peng, Chao Yan, Xining Cao, Yue Zhou, Long Chen, Tao Lin, Dalin He, Yi Hua, Guanghui Wei
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0092815

Association of DSC3 mRNA Down-Regulation in Prostate Cancer with Promoter Hypermethylation and Poor Prognosis
Cited by: 18
Author(s): Jun Pan, Yu Chen, Chengqiang Mo, Daohu Wang, Junxing Chen, Xiaopeng Mao, Shengjie Guo, Sian Liu, Shaopeng Qiu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0171300

Identification of the early and late responder genes during the generation of induced pluripotent stem cells from mouse fibroblasts
Cited by: 3
Author(s): Jihwan Park, Yoo Wook Kwon, Seokjin Ham, Chang Pyo Hong, Seong-Hye Seo, Moon Kyung Choe, So I. Shin, Choon Soo Lee, Hyo Soo Kim, Tae-Young Roh
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0048732

Genome-Wide Identification of Copy Number Variations in Chinese Holstein
Cited by: 46
Author(s): Li Jiang, Jicai Jiang, Jiying Wang, Xiangdong Ding, J. Liu, Qin Zhang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0004047

Chromosomal Inversions between Human and Chimpanzee Lineages Caused by Retrotransposons
Cited by: 83
Author(s): Jungnam Lee, Kyudong Han, Thomas J. Meyer, Heui-Soo Kim, Mark A. Batzer
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0111721

Tempo and Mode of Gene Duplication in Mammalian Ribosomal Protein Evolution
Cited by: 13
Author(s): Asav P. Dharia, Ajay Obla, Matthew D. Gajdosik, Amanda Simon, Craig E. Nelson
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0008960

SOX2 Is an Oncogene Activated by Recurrent 3q26.3 Amplifications in Human Lung Squamous Cell Carcinomas
Cited by: 272
Author(s): Thomas Hussenet, Soraya Dali, Julien Exinger, Ben Monga, Bernard Jost, Doulaye Dembelé, Nadine Martinet, Christelle Thibault, Joerg Huelsken, Élisabeth Brambilla, Stanislas du Manoir
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0040637

An Effort to Use Human-Based Exome Capture Methods to Analyze Chimpanzee and Macaque Exomes
Cited by: 23
Author(s): Xin Jin, Mingze He, Betsy Ferguson, Yuhuan Meng, Limei Ouyang, Jingjing Ren, Thomas Mailund, Fei Sun, Liangdan Sun, Juan Shen, Min Zhuo, Li Song, Jufang Wang, Fei Ling, Yuqi Zhu, Christina Hvilsom, Hans R. Siegismund, Xiaoming Liu, Zhuolin Gong, Fang Ji, Xinzhong Wang, Boqing Liu, Yu Zhang, Jingli Hou, Jing Wang, Hua Zhao, Yanyi Wang, Xiaodong Fang, Guojie Zhang, Jian Wang, Xuejun Zhang, Mikkel H. Schierup, Hongli Du, Jun Wang, Xiaoning Wang
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0092707

Epigenetic Silencing of TFPI-2 in Canine Diffuse Large B-Cell Lymphoma
Cited by: 32
Author(s): Serena Ferraresso, Silvia Bresolin, Arianna Aricò, S. Comazzi, Maria Elena Gelain, Fulvio Riondato, Luca Bargelloni, Laura Marconato, Geertruy te Kronnie, Luca Aresu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0118737

SNAP23 Regulates Endothelial Exocytosis of von Willebrand Factor
Cited by: 33
Author(s): Qinglin Zhu, Munekazu Yamakuchi, Charles J. Lowenstein
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0006458

Punicic Acid a Conjugated Linolenic Acid Inhibits TNFα-Induced Neutrophil Hyperactivation and Protects from Experimental Colon Inflammation in Rats
Cited by: 105
Author(s): Tarek Boussetta, Houssam Raad, Philippe Lettéron, Marie‐Anne Gougerot‐Pocidalo, Jean‐Claude Marie, Fathi Driss, Jamel El-Benna
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0122797

Identification of Novel Loci Associated with Gastrointestinal Parasite Resistance in a Red Maasai x Dorper Backcross Population
Cited by: 56
Author(s): Magda Vieira Benavides, Tad S. Sonstegard, Stephen J. Kemp, J. M. Mugambi, John P. Gibson, R.L. Baker, Olivier Hanotte, Karen Marshall, C. P. van Tassell
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0028787

Cooperative Genome-Wide Analysis Shows Increased Homozygosity in Early Onset Parkinson's Disease
Cited by: 22
Author(s): Javier Simón‐Sánchez, Laura L. Kilarski, Michael A. Nalls, María Martínez, Claudia Schulte, Peter Alan Holmans, Thomas Gasser, John Hardy, Andrew B. Singleton, Nicholas W. Wood, Alexis Brice, Peter Heutink, Nigel Williams, Huw R. Morris
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0030677

ISL1 Directly Regulates FGF10 Transcription during Human Cardiac Outflow Formation
Cited by: 43
Author(s): Christelle Golzio, Emmanuelle Havis, Philippe Daubas, Grégory Nuel, Candice Babarit, Arnold Münnich, Michel Vekemans, Stéphane Zaffran, Stanislas Lyonnet, Heather C. Etchevers
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0008693

Genome-Wide Analyses of Gene Expression during Mouse Endochondral Ossification
Cited by: 47
Author(s): Claudine G. James, Lee‐Anne Stanton, Hanga Agoston, Veronica Ulici, T. Michael Underhill, Frank Beier
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0205109

Functional analysis of a triplet deletion in the gene encoding the sodium glucose transporter 3, a potential risk factor for ADHD
Cited by: 5
Author(s): Nadine Schäfer, M Friedrich, Morten Jørgensen, Sina Kollert, Hermann Koepsell, Erhard Wischmeyer, Klaus‐Peter Lesch, Dietmar Geiger, Frank Döring
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0016685

Detection and Removal of Biases in the Analysis of Next-Generation Sequencing Reads
Cited by: 88
Author(s): Schraga Schwartz, Oren Ram, Gil Ast
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0042371

Mating of the Stichotrichous Ciliate Oxytricha trifallax Induces Production of a Class of 27 nt Small RNAs Derived from the Parental Macronucleus
Cited by: 40
Author(s): Alan M. Zahler, Zachary T. Neeb, Athena W. Lin, Sol Katzman
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0201041

Diagnostic value of partial exome sequencing in developmental disorders
Cited by: 33
Author(s): Laura Gieldon, Luisa Mackenroth, Anne‐Karin Kahlert, Johannes R. Lemke, Joseph Porrmann, Jens Schallner, Maja von der Hagen, Susanne Markus, Sabine Weidensee, Barbara Novotna, Charlotte Soerensen, Barbara Klink, Johannes Maximilian Wagner, Andreas Tzschach, Arne Jahn, Franziska Kuhlee, Karl Hackmann, Evelin Schröck, Nataliya Di Donato, Andreas Rump
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0059577

The Turkey Ig-Like Receptor Family: Identification, Expression and Function
Cited by: 10
Author(s): Katharina Windau, Birgit C. Viertlboeck, Thomas Göbel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0004496

Genetic Variants of Wnt Transcription Factor TCF-4 (TCF7L2) Putative Promoter Region Are Associated with Small Intestinal Crohn's Disease
Cited by: 126
Author(s): Maureen J. Koslowski, I. Kübler, Mathias Chamaillard, Elke Schaeffeler, Walter Reinisch, Guoxing Wang, Julia Beisner, Alexander Teml, Laurent Peyrin–Biroulet, Stefan Winter, Klaus Herrlinger, Paul Rutgeerts, Séverine Vermeire, Rachel Cooney, Klaus Fellermann, D P Jewell, Charles L. Bevins, Matthias Schwab, Eduard F. Stange, Jan Wehkamp
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0060465

Gene Regulation by CcpA and Catabolite Repression Explored by RNA-Seq in Streptococcus mutans
Cited by: 64
Author(s): Lin Zeng, Sang Chul Choi, Charles G. Danko, Adam Siepel, Michael J. Stanhope, Robert A. Burne
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0008743

Enhanced Binding of Poly(ADP-ribose)polymerase-1 and Ku80/70 to the ITGA2 Promoter via an Extended Cytosine-Adenosine Repeat
Cited by: 11
Author(s): Yann Chéli, Shirley Williams, Robert Ballotti, Diane J. Nugent, Thomas J. Kunicki
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0077224

Alternative 5’ Untranslated Regions Are Involved in Expression Regulation of Human Heme Oxygenase-1
Cited by: 39
Author(s): Marcel Kramer, Christoph Sponholz, Monique Slaba, Bianka Wissuwa, Ralf A. Claus, Uwe Menzel, Klaus Huse, Matthias Platzer, Michael Bauer
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0136227

Hepatitis C Virus Driven AXL Expression Suppresses the Hepatic Type I Interferon Response
Cited by: 17
Author(s): Scott A. Read, Enoch Tay, Mahsa Shahidi, K. O'Connor, David R. Booth, Jacob George, Mark W. Douglas
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0115358

Genome-Wide H3K4me3 Analysis in Angus Cattle with Divergent Tenderness
Cited by: 14
Author(s): Chunping Zhao, José A. Carrillo, Fei Tian, Zan Liu, Scott M. Updike, Keji Zhao, Fei Zhan, Jiuzhou Song
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0121748

Sepsis Induces Specific Changes in Histone Modification Patterns in Human Monocytes
Cited by: 38
Author(s): Sebastian Weiterer, Florian Uhle, Christoph Lichtenstern, Benedikt Hermann Siegler, Sabin Bhuju, Michael Jarek, Marek Bartkuhn, Markus Weigand
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0147697

MutAid: Sanger and NGS Based Integrated Pipeline for Mutation Identification, Validation and Annotation in Human Molecular Genetics
Cited by: 5
Author(s): Ram Vinay Pandey, Stephan Pabinger, Albert Kriegner, Andreas Weinhäusel
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0111362

Synergistic Effect of High Charge and Energy Particle Radiation and Chronological Age on Biomarkers of Oxidative Stress and Tissue Degeneration: A Ground-Based Study Using the Vertebrate Laboratory Model Organism Oryzias latipes
Cited by: 5
Author(s): Xuan Zheng, Xinyan Zhang, Lingling Ding, Jeffrey R. Lee, Paul M. Weinberger, William S. Dynan
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0014697

ENCODE Tiling Array Analysis Identifies Differentially Expressed Annotated and Novel 5′ Capped RNAs in Hepatitis C Infected Liver
Cited by: 19
Author(s): Milan E. Folkers, Don A. Delker, Christopher I. Maxwell, Cassie A. Nelson, Jason J. Schwartz, David A. Nix, Curt H. Hagedorn
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0235857

Broadening our understanding of the genetics of Juvenile Idiopathic Arthritis (JIA): Interrogation of three dimensional chromatin structures and genetic regulatory elements within JIA-associated risk loci
Cited by: 5
Author(s): Kaiyu Jiang, Haeja Kessler, Yungki Park, Marc Sudman, Susan D. Thompson, James N. Jarvis
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0177406

Differential DNA methylation of MSI2 and its correlation with diabetic traits
Cited by: 14
Author(s): Jae‐Pil Jeon, In-Uk Koh, Nak-Hyun Choi, Bong-Jo Kim, Bok‐Ghee Han, Suman Lee
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0222788

Additive and heterozygous (dis)advantage GWAS models reveal candidate genes involved in the genotypic variation of maize hybrids to Azospirillum brasilense
Cited by: 17
Author(s): Miriam Suzane Vidotti, Danilo Hottis Lyra, Júlia Silva Morosini, Ítalo Stefanine Correia Granato, Maria Carolina Quecine, João Lúcio de Azevedo, Roberto Fritsche‐Neto
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0045173

Stem Cell Selection In Vivo Using Foamy Vectors Cures Canine Pyruvate Kinase Deficiency
Cited by: 23
Author(s): Grant D. Trobridge, Brian C. Beard, Ryan Wu, Christina Ironside, Punam Malik, Hans Peter Kiem
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0088880

Computational Characterization of Modes of Transcriptional Regulation of Nuclear Receptor Genes
Cited by: 6
Author(s): Yogita Sharma, Chandra Sekhar Reddy Chilamakuri, Marit Bakke, Boris Lenhard
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0016330

Genome-Wide Analysis of Transcriptional Reprogramming in Mouse Models of Acute Myeloid Leukaemia
Cited by: 29
Author(s): Nicolas Bonadies, Samuel D. Foster, Wai In Chan, Brynn T. Kvinlaug, Dominik Spensberger, Mark A. Dawson, Elaine Spooncer, Anthony D. Whetton, Andrew J. Bannister, Brian J. P. Huntly, Berthold Göttgens
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0066722

DNA Methylation Patterns Facilitate the Identification of MicroRNA Transcription Start Sites: A Brain-Specific Study
Cited by: 8
Author(s): Tapas Bhadra, Malay Bhattacharyya, Lars Feuerbach, Thomas Lengauer, Sanghamitra Bandyopadhyay
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0211111

HIV-1 infection increases microRNAs that inhibit Dicer1, HRB and HIV-EP2, thereby reducing viral replication
Cited by: 18
Author(s): Shira Modai, Luba Farberov, Eytan Herzig, Ofer Isakov, Amnon Hizi, Noam Shomron
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0182946

Whole gene sequencing identifies deep-intronic variants with potential functional impact in patients with hypertrophic cardiomyopathy
Cited by: 26
Author(s): Rita Mendes de Almeida, Joana Tavares, Sandra Martins, Tereza Cristina de Carvalho, Francisco J. Enguita, Dulce Brito, Maria Carmo‐Fonseca, Luís Rocha Lopes
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0091793

The Cellular Distribution and Ser262 Phosphorylation of Tau Protein Are Regulated by BDNF In Vitro
Cited by: 19
Author(s): Qian Chen, Zhou Zhou, Lei Zhang, Shangcheng Xu, Chunhai Chen, Zhengping Yu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0011474

Worldwide Distribution of the MYH9 Kidney Disease Susceptibility Alleles and Haplotypes: Evidence of Historical Selection in Africa
Cited by: 33
Author(s): Tarás K. Oleksyk, George W. Nelson, Ping An, Jeffrey B. Kopp, Cheryl A. Winkler
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0007904

Epigenetic Features of Human Mesenchymal Stem Cells Determine Their Permissiveness for Induction of Relevant Transcriptional Changes by SYT-SSX1
Cited by: 42
Author(s): Luisa Cironi, Paolo Provero, Nicola Riggi, Michalina Janiszewska, Domizio Suvà, Mario-Luca Suvà, Vincent Kindler, Ivan Stamenkovic
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0009679

FragKB: Structural and Literature Annotation Resource of Conserved Peptide Fragments and Residues
Cited by: 7
Author(s): Ashish V. Tendulkar, Martin Krallinger, Victor de la Torre, Gonzalo López, Pramod P. Wangikar, Alfonso Valencia
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0021975

Lentiviral Mediated Transgenesis by In Vivo Manipulation of Spermatogonial Stem Cells
Cited by: 26
Author(s): Lalit Sehgal, Rahul Thorat, Nileema Khapare, Amitabha Mukhopadhaya, Mayur Sawant, Sorab N. Dalal
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0019304

Diagnosis of Indian Visceral Leishmaniasis by Nucleic Acid Detection Using PCR
Cited by: 69
Author(s): Pankaj Srivastava, Sanjana Mehrotra, Puja Tiwary, Jaya Chakravarty, Shyam Sundar
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0153453

An Improved microRNA Annotation of the Canine Genome
Cited by: 20
Author(s): Luca Penso-Dolfin, Ross Swofford, Jeremy Johnson, Jessica Alföldi, Kerstin Lindblad‐Toh, David Swarbreck, Simon Moxon, Federica Di Palma
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0001803

Integrative Genome-Wide Expression Analysis Bears Evidence of Estrogen Receptor-Independent Transcription in Heregulin-Stimulated MCF-7 Cells
Cited by: 7
Author(s): Takeshi Nagashima, Tsuyoshi Suzuki, Shinji Kondo, Yoshio Kuroki, Kaoru Takahashi, Kaori Ide, Noriko Yumoto, Asako Hasegawa, Tetsuro Toyoda, Toshio Kojima, Akihiko Konagaya, Harukazu Suzuki, Yoshihide Hayashizaki, Yoshiyuki Sakaki, Mariko Hatakeyama
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pone.0049705

Whole-Transcriptome Sequencing Identifies Novel IRF2BP2-CDX1 Fusion Gene Brought about by Translocation t(1;5)(q42;q32) in Mesenchymal Chondrosarcoma
Cited by: 75
Author(s): Kaja Beate Nyquist, Ioannis Panagopoulos, Jim Thorsen, Lisbeth Haugom, Ludmila Gorunova, Bodil Bjerkehagen, Alexander Fosså, Marianne Guriby, Torfinn Nome, Ragnhild Lothe, Rolf Inge Skotheim, Sverre Heim, Francesca Micci
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0171262

Serum response factor regulates smooth muscle contractility via myotonic dystrophy protein kinases and L-type calcium channels
Cited by: 21
Author(s): Moon Young Lee, Chanjae Park, Se Eun Ha, Paul J. Park, Robyn M. Berent, Brian G. Jorgensen, Robert D. Corrigan, Nathan Grainger, Peter J. Blair, Orazio J. Slivano, Joseph M. Miano, Sean M. Ward, Terence K. Smith, Kenton M. Sanders, Seungil Ro
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0219576

Distribution of endogenous gammaretroviruses and variants of the Fv1 restriction gene in individual mouse strains and strain subgroups
Cited by: 3
Author(s): Matthew Skorski, Devinka Bamunusinghe, Qingping Liu, Esther Shaffer, Christine A. Kozak
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0045364

5-Aza-2′-deoxycytidine Leads to Reduced Embryo Implantation and Reduced Expression of DNA Methyltransferases and Essential Endometrial Genes
Cited by: 43
Author(s): Yubin Ding, Long Chen, Xueqing Liu, Xuemei Chen, Liang-Rui Guo, Yinyin Xia, Junlin He, Yingxiong Wang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0103020

IthaGenes: An Interactive Database for Haemoglobin Variations and Epidemiology
Cited by: 155
Author(s): Petros Kountouris, Carsten W. Lederer, Pavlos Fanis, Xenia Feleki, John Old, Marina Kleanthous
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0218386

Effects of cessation of cigarette smoking on eicosanoid biomarkers of inflammation and oxidative damage
Cited by: 17
Author(s): Joseph P. McElroy, Steven G. Carmella, Alisa K. Heskin, Man‐Lai Tang, Sharon E. Murphy, Sarah A. Reisinger, Joni Jensen, Dorothy K. Hatsukami, Stephen S. Hecht, Peter G. Shields
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0019212

Domestication of Transposable Elements into MicroRNA Genes in Plants
Cited by: 94
Author(s): Li V. Yang, Chaoqun Li, Jie Xia, Youxin Jin
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0040959

Gene Expression Profiling Identifies HOXB4 as a Direct Downstream Target of GATA-2 in Human CD34+ Hematopoietic Cells
Cited by: 15
Author(s): Tohru Fujiwara, Hisayuki Yokoyama, Yoko Okitsu, Makoto Kamata, Noriko Fukuhara, Yasushi Onishi, Shin Fujimaki, Shinichiro Takahashi, Kenichi Ishizawa, Emery H. Bresnick, Hideo Harigae
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0032590

Gene Expression of the Tumour Suppressor LKB1 Is Mediated by Sp1, NF-Y and FOXO Transcription Factors
Cited by: 34
Author(s): Nicolas Lützner, Johanna De-Castro Arce, Frank Rösl
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0042180

An Overgrowth Disorder Associated with Excessive Production of cGMP Due to a Gain-of-Function Mutation of the Natriuretic Peptide Receptor 2 Gene
Cited by: 95
Author(s): Kouji Miura, Noriyuki Namba, M. Fujiwara, Yasuhisa Ohata, Hidekazu Ishida, Taichi Kitaoka, Takuo Kubota, Haruhiko Hirai, Chikahisa Higuchi, Noriyuki Tsumaki, Hideki Yoshikawa, Norio Sakai, Toshimi Michigami, Keiichi Ozono
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0133988

Social Exclusion Changes Histone Modifications H3K4me3 and H3K27ac in Liver Tissue of Wild House Mice
Cited by: 3
Author(s): Linda Krause, Bernhard Haubold, Angelika Börsch-Haubold
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0035839

The RIP140 Gene Is a Transcriptional Target of E2F1
Cited by: 22
Author(s): Aurélie Docquier, Patrick Augereau, Marion Lapierre, Pierre-Olivier Harmand, Éric Badia, Jean-Sébastien Annicotte, Lluís Fajas, Vincent Cavaillès
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0165559

Genetic and Epigenetic Regulation of TOX3 Expression in Breast Cancer
Cited by: 23
Author(s): Yoo-Jeong Han, Jing Zhang, Yonglan Zheng, Dezheng Huo, Olufunmilayo I. Olopade
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0019174

Ascl1/Mash1 Is a Novel Target of Gli2 during Gli2-Induced Neurogenesis in P19 EC Cells
Cited by: 47
Author(s): Anastassia Voronova, Fischer Anna, Ryan Tj, Ashraf Al Madhoun, Ilona S. Skerjanc
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0019891

Physical Confirmation and Mapping of Overlapping Rat Mammary Carcinoma Susceptibility QTLs, Mcs2 and Mcs6
Cited by: 8
Author(s): Jennifer Sanders, Jill D. Haag, David J. Samuelson
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0105382

Copy Number Variation Analysis on a Non-Hodgkin Lymphoma Case-Control Study Identifies an 11q25 Duplication Associated with Diffuse Large B-Cell Lymphoma
Cited by: 17
Author(s): Lucía Conde, Jacques Riby, Jianqing Zhang, Paige M. Bracci, Christine F. Skibola
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0136749

Genome-Wide Scan for Visceral Leishmaniasis in Mixed-Breed Dogs Identifies Candidate Genes Involved in T Helper Cells and Macrophage Signaling
Cited by: 19
Author(s): Yuri Tani Utsunomiya, Érica S. Ribeiro, Amanda Pífano Neto Quintal, Juliano Rodrigues Sangalli, Valquiria R. Gazola, Henrique Borges de Paula, Cristiana T. Trinconi, Valéria Marçal Felix de Lima, S. H. V. Perri, Jeremy F. Taylor, Robert D. Schnabel, Tad S. Sonstegard, José Fernando Garcia, Cáris Maroni Nunes
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0000643

The Cis-regulatory Logic of the Mammalian Photoreceptor Transcriptional Network
Cited by: 136
Author(s): Timothy H.-C. Hsiau, Claudiu Diaconu, Connie A. Myers, Jongwoo Lee, Constance L. Cepko, Joseph C. Corbo
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.pone.0143212

GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana
Cited by: 23
Author(s): Johanna A. Bac-Molenaar, E.F. Fradin, Juriaan Rienstra, D. Vreugdenhil, Joost J. B. Keurentjes
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0018969

Variation in Array Size, Monomer Composition and Expression of the Macrosatellite DXZ4
Cited by: 19
Author(s): Deanna C. Tremblay, Shawn C. Moseley, Brian P. Chadwick
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0075344

Integration Profile and Safety of an Adenovirus Hybrid-Vector Utilizing Hyperactive Sleeping Beauty Transposase for Somatic Integration
Cited by: 33
Author(s): Wenli Zhang, Martin Mück-Häusl, Jichang Wang, Chuanbo Sun, Maren Gebbing, Csaba Miskey, Zoltán Ivics, Zsuzsanna Izsvák, Anja Ehrhardt
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0129811

A Novel Locus for Ectodermal Dysplasia of Hair, Nail and Skin Pigmentation Anomalies Maps to Chromosome 18p11.32-p11.31
Cited by: 2
Author(s): Rabia Habib, Muhammad Ansar, Manuel Mattheisen, Muhammad Shahid, Ghazanfar Ali, Wasim Ahmad, Regina C. Betz
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0105723

Effects of GWAS-Associated Genetic Variants on lncRNAs within IBD and T1D Candidate Loci
Cited by: 69
Author(s): Aashiq H. Mirza, Simranjeet Kaur, Caroline Brorsson, Flemming Pociot
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0108652

Genome-Wide Mapping of Yeast Histone Chaperone Anti-Silencing Function 1 Reveals Its Role in Condensin Binding with Chromatin
Cited by: 7
Author(s): Pooran Singh Dewari, Poonam Bhargava
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0153333

Neofunctionalization of Chromoplast Specific Lycopene Beta Cyclase Gene (CYC-B) in Tomato Clade
Cited by: 13
Author(s): Vijee Mohan, Arun K. Pandey, Yellamaraju Sreelakshmi, Rameshwar Sharma
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0000658

A Unique Role for Nonmuscle Myosin Heavy Chain IIA in Regulation of Epithelial Apical Junctions
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Author(s): Andrei I. Ivanov, Moshe Bachar, Brian A. Babbin, Robert S. Adelstein, Asma Nusrat, Charles A. Parkos
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.pone.0207984

Leucine rich repeat kinase 2 (LRRK2) GLY2019SER mutation is absent in a second cohort of Nigerian Africans with Parkinson disease
Cited by: 16
Author(s): Njideka Okubadejo, Mie Rizig, Oluwadamilola O. Ojo, Hallgeir Jonvik, Olajumoke Oshinaike, Emmeline Brown, Henry Houlden
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0049570

The CREB-miR-9 Negative Feedback Minicircuitry Coordinates the Migration and Proliferation of Glioma Cells
Cited by: 81
Author(s): Xiaochao Tan, Shan Wang, Bin Yang, Liyuan Zhu, Bin Yin, Tengfei Chao, Jizong Zhao, Jing Yuan, Boqin Qiang, Xiaozhong Peng
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0165694

The Conserved Dcw Gene Cluster of R. sphaeroides Is Preceded by an Uncommonly Extended 5’ Leader Featuring the sRNA UpsM
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Author(s): Lennart Weber, Clemens Thoelken, Marcel Volk, Bernhard Remes, Marcus Lechner, Gabriele Klug
Software Mentions: 1
Published: almost 10 years ago

10.3390/cancers12030661

Characterization of Human NK Cell-Derived Exosomes: Role of DNAM1 Receptor in Exosome-Mediated Cytotoxicity against Tumor
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Author(s): Anna Pace, Nicola Tumino, Francesca Besi, Claudia Alicata, Libenzio Adrian Conti, Enrico Munari, Enrico Maggi, Paola Vacca, Alessandro Moretta
Software Mentions: 1
Published: over 6 years ago

10.3390/cancers13092207

TET2 Inhibits PD-L1 Gene Expression in Breast Cancer Cells through Histone Deacetylation
Cited by: 15
Author(s): Yinghui Shen, Lu Liu, Mengyuan Wang, Bo Xu, Ruitu Lyu, Yujiang Geno Shi, Li Tan
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers5030998

The Interactions of microRNA and Epigenetic Modifications in Prostate Cancer
Cited by: 31
Author(s): Prashant Singh, Moray J. Campbell
Software Mentions: 1
Published: about 13 years ago

10.3390/cancers4041180

Annotating Cancer Variants and Anti-Cancer Therapeutics in Reactome
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Author(s): Marija Milacic, Robin Haw, Karen Rothfels, Guanming Wu, David Croft, Henning Hermjakob, Peter D’Eustachio, Lincoln Stein
Software Mentions: 1
Published: almost 14 years ago

10.1038/s41418-019-0288-7

MALAT1-KTN1-EGFR regulatory axis promotes the development of cutaneous squamous cell carcinoma
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Author(s): Ying Zhang, Lin Gao, Shudong Ma, Ji Ma, Yinghui Wang, Shanshan Li, Xia Hu, Shuo Han, Meijuan Zhou, Liang Zhou, Zhenhua Ding
Software Mentions: 1
Published: over 7 years ago

10.1038/cddis.2016.319

Transactivation of TrkB by Sigma-1 receptor mediates cocaine-induced changes in dendritic spine density and morphology in hippocampal and cortical neurons
Cited by: 29
Author(s): Minhan Ka, Yeon Hee Kook, Ke Liao, Shilpa Buch, Woo Yang Kim
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41419-021-03411-6

HOXB4 inhibits the proliferation and tumorigenesis of cervical cancer cells by downregulating the activity of Wnt/β-catenin signaling pathway
Cited by: 14
Author(s): Dan Lei, Wenting Yang, Pan Zheng
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-021-03763-z

RNA m6A reader YTHDF2 facilitates lung adenocarcinoma cell proliferation and metastasis by targeting the AXIN1/Wnt/β-catenin signaling
Cited by: 50
Author(s): Yin Li, Hao Sheng, Feng Ma, Qiang Wu, Jianfang Huang, Qiang Chen, Lianghe Sheng, Xinghai Zhu, Xianfang Zhu, Meng Xu
Software Mentions: 1
Published: over 5 years ago

10.1038/cddis.2017.241

Mitochondrial AKAP1 supports mTOR pathway and tumor growth
Cited by: 40
Author(s): Laura Rinaldi, Maria Sepe, Rossella Delle Donne, Kristel Conte, Antonietta Arcella, Domenica Borzacchiello, Stefano Amente, Fernanda De Vita, Monia Porpora, Corrado Garbi, Maria Antonietta Oliva, Claudio Procaccini, Deriggio Faicchia, Giuseppe Matarese, Federica Zito Marino, Gaetano Rocco, Sara Pignatiello, Renato Franco, Luigi Insabato, Barbara Majello, Antonio Feliciello
Software Mentions: 1
Published: over 9 years ago

10.1038/cddis.2016.278

BNC2 is a putative tumor suppressor gene in high-grade serous ovarian carcinoma and impacts cell survival after oxidative stress
Cited by: 14
Author(s): Laura Cesaratto, Eleonora Grisard, Michela Coan, Lorenzo Zandonà, Elena De Mattia, Elena Poletto, Erika Cecchin, Fabio Puglisi, Vincenzo Canzonieri, Maria Teresa Mucignat, Antonella Zucchetto, Gabriele Stocco, Alfonso Colombatti, Milena S. Nicoloso, Riccardo Spizzo
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41419-018-0495-z

DNA methylation, through DNMT1, has an essential role in the development of gastrointestinal smooth muscle cells and disease
Cited by: 19
Author(s): Brian G. Jorgensen, Robyn M. Berent, Se Eun Ha, Kotaro Horiguchi, Kent C. Sasse, Laren Becker, Seungil Ro
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-018-0472-6

Long non-coding RNA MUC5B-AS1 promotes metastasis through mutually regulating MUC5B expression in lung adenocarcinoma
Cited by: 45
Author(s): Shuai Yuan, Qingyun Liu, Zhangxue Hu, Zhengyu Zhou, Guilu Wang, Chengying Li, Wenting Xie, Gang Ma, Ying Xiang, Na Wu, Long Wu, Zhengping Yu, Bai Li, Yafei Li
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-021-03480-7

BMP2-dependent gene regulatory network analysis reveals Klf4 as a novel transcription factor of osteoblast differentiation
Cited by: 16
Author(s): Shuaitong Yu, Jian Guo, Zheyi Sun, Chujiao Lin, Huangheng Tao, Qian Zhang, Yu Cui, Huanyan Zuo, Yuxiu Lin, Shuo Chen, Huan Liu, Zhi Chen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41420-020-00359-y

Oncogenic role of lncRNA CRNDE in acute promyelocytic leukemia and NPM1-mutant acute myeloid leukemia
Cited by: 9
Author(s): Xuefei Ma, Wei Zhang, Ming Zhao, Shufen Li, Ji Wen, Kankan Wang
Software Mentions: 1
Published: almost 6 years ago

10.1038/celldisc.2017.35

Methylation of transcription factor YY2 regulates its transcriptional activity and cell proliferation
Cited by: 27
Author(s): Xiaonan Wu, Tao-tao Shi, Yaohui He, Feifei Wang, Rui Sang, Jian Ding, Wen‐juan Zhang, Xing-yi Shu, Hai‐feng Shen, Yi Jia, Xiang Gao, Wen Liu
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41421-018-0051-0

A growth factor-free culture system underscores the coordination between Wnt and BMP signaling in Lgr5+ intestinal stem cell maintenance
Cited by: 39
Author(s): Yehua Li, Yuan Liu, Bofeng Liu, Jilian Wang, Shuangqing Wei, Zhengjian Qi, Shan Wang, Wei Fu, Ye-Guang Chen
Software Mentions: 1
Published: about 8 years ago

10.1016/j.chom.2018.01.008

Comparative Heterochromatin Profiling Reveals Conserved and Unique Epigenome Signatures Linked to Adaptation and Development of Malaria Parasites
Cited by: 92
Author(s): Sabine Anne‐Kristin Fraschka, Michael Filarsky, Regina Hoo, Igor Niederwieser, Xue Yan Yam, Nicolas M. B. Brancucci, Franziska Mohring, Annals Tatenda Mushunje, Xiucai Huang, Peter Christensen, François Nosten, Zbynek Bozdech, Bruce Russell, Robert W. Moon, Matthias Marti, Peter R. Preiser, Richárd Bártfai, Till S. Voss
Software Mentions: 1
Published: over 8 years ago

10.1007/s00018-017-2580-3

Expression of a SOX1 overlapping transcript in neural differentiation and cancer models
Cited by: 21
Author(s): Azaz Ahmad, Stephanie Strohbuecker, Cristina Tufarelli, Virginie Sottile
Software Mentions: 1
Published: about 9 years ago

10.1016/j.celrep.2017.05.005

RUNX1-ETO and RUNX1-EVI1 Differentially Reprogram the Chromatin Landscape in t(8;21) and t(3;21) AML
Cited by: 42
Author(s): Justin Loke, Salam A. Assi, Maria Rosaria Imperato, Anetta Ptasińska, Pierre Cauchy, Yura Grabovska, N Martinez Soria, Manoj Raghavan, H.R. Delwel, Peter N. Cockerill, Olaf Heidenreich, Constanze Bonifer
Software Mentions: 1
Published: over 9 years ago

10.1016/j.stem.2012.06.008

Esrrb Is a Pivotal Target of the Gsk3/Tcf3 Axis Regulating Embryonic Stem Cell Self-Renewal
Cited by: 347
Author(s): Graziano Martello, Toshimi Sugimoto, Evangelia Diamanti, Anagha Joshi, Rebecca Hannah, Satoshi Ohtsuka, Berthold Göttgens, Hitoshi Niwa, Austin Smith
Software Mentions: 1
Published: almost 14 years ago

10.3390/cells9030711

miR-7 Controls the Dopaminergic/Oligodendroglial Fate through Wnt/β-catenin Signaling Regulation
Cited by: 17
Author(s): Lavanya Adusumilli, Nicola Facchinello, Cathleen Teh, Giorgia Busolin, Minh Tn Le, Henry Yang, Giorgia Beffagna, Stefano Campanaro, Wai Leong Tam, Francesco Argenton, Bing Lim, Vladimir Korzh, Natascia Tiso
Software Mentions: 1
Published: over 6 years ago

10.3390/cells9102149

In Vitro Studies to Define the Cell-Surface and Intracellular Targets of Polyarginine-Conjugated Sodium Borocaptate as a Potential Delivery Agent for Boron Neutron Capture Therapy
Cited by: 17
Author(s): Akiko Fujimura, Seiji Yasui, Kazuyo Igawa, Atsushi Ueda, K. Watanabe, Tadashi Hanafusa, Ichikawa Yasuaki, Sachiko Yoshihashi, Koji Tsuchida, Atsunori Kamiya, Shinichi Furuya
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells6030021

Studying Autophagy in Zebrafish
Cited by: 48
Author(s): Benan John Mathai, Annemarie H. Meijer, Anne Simonsen
Software Mentions: 1
Published: about 9 years ago

10.3390/cells10010094

Context Matters: NOTCH Signatures and Pathway in Cancer Progression and Metastasis
Cited by: 43
Author(s): Julia O. Misiorek, Alicja Przybyszewska-Podstawka, Joanna Kałafut, Beata Paziewska, Katarzyna Rolle, Adolfo Rivero-Müller, Matthias Nees
Software Mentions: 1
Published: over 5 years ago

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