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10.1371/journal.pone.0111362

Synergistic Effect of High Charge and Energy Particle Radiation and Chronological Age on Biomarkers of Oxidative Stress and Tissue Degeneration: A Ground-Based Study Using the Vertebrate Laboratory Model Organism Oryzias latipes
Cited by: 5
Author(s): Xuan Zheng, Xinyan Zhang, Lingling Ding, Jeffrey R. Lee, Paul M. Weinberger, William S. Dynan
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0014697

ENCODE Tiling Array Analysis Identifies Differentially Expressed Annotated and Novel 5′ Capped RNAs in Hepatitis C Infected Liver
Cited by: 19
Author(s): Milan E. Folkers, Don A. Delker, Christopher I. Maxwell, Cassie A. Nelson, Jason J. Schwartz, David A. Nix, Curt H. Hagedorn
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0235857

Broadening our understanding of the genetics of Juvenile Idiopathic Arthritis (JIA): Interrogation of three dimensional chromatin structures and genetic regulatory elements within JIA-associated risk loci
Cited by: 5
Author(s): Kaiyu Jiang, Haeja Kessler, Yungki Park, Marc Sudman, Susan D. Thompson, James N. Jarvis
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0177406

Differential DNA methylation of MSI2 and its correlation with diabetic traits
Cited by: 14
Author(s): Jae‐Pil Jeon, In-Uk Koh, Nak-Hyun Choi, Bong-Jo Kim, Bok‐Ghee Han, Suman Lee
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0222788

Additive and heterozygous (dis)advantage GWAS models reveal candidate genes involved in the genotypic variation of maize hybrids to Azospirillum brasilense
Cited by: 17
Author(s): Miriam Suzane Vidotti, Danilo Hottis Lyra, Júlia Silva Morosini, Ítalo Stefanine Correia Granato, Maria Carolina Quecine, João Lúcio de Azevedo, Roberto Fritsche‐Neto
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0045173

Stem Cell Selection In Vivo Using Foamy Vectors Cures Canine Pyruvate Kinase Deficiency
Cited by: 23
Author(s): Grant D. Trobridge, Brian C. Beard, Ryan Wu, Christina Ironside, Punam Malik, Hans Peter Kiem
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0088880

Computational Characterization of Modes of Transcriptional Regulation of Nuclear Receptor Genes
Cited by: 6
Author(s): Yogita Sharma, Chandra Sekhar Reddy Chilamakuri, Marit Bakke, Boris Lenhard
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0016330

Genome-Wide Analysis of Transcriptional Reprogramming in Mouse Models of Acute Myeloid Leukaemia
Cited by: 29
Author(s): Nicolas Bonadies, Samuel D. Foster, Wai In Chan, Brynn T. Kvinlaug, Dominik Spensberger, Mark A. Dawson, Elaine Spooncer, Anthony D. Whetton, Andrew J. Bannister, Brian J. P. Huntly, Berthold Göttgens
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0066722

DNA Methylation Patterns Facilitate the Identification of MicroRNA Transcription Start Sites: A Brain-Specific Study
Cited by: 8
Author(s): Tapas Bhadra, Malay Bhattacharyya, Lars Feuerbach, Thomas Lengauer, Sanghamitra Bandyopadhyay
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0211111

HIV-1 infection increases microRNAs that inhibit Dicer1, HRB and HIV-EP2, thereby reducing viral replication
Cited by: 18
Author(s): Shira Modai, Luba Farberov, Eytan Herzig, Ofer Isakov, Amnon Hizi, Noam Shomron
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0182946

Whole gene sequencing identifies deep-intronic variants with potential functional impact in patients with hypertrophic cardiomyopathy
Cited by: 26
Author(s): Rita Mendes de Almeida, Joana Tavares, Sandra Martins, Tereza Cristina de Carvalho, Francisco J. Enguita, Dulce Brito, Maria Carmo‐Fonseca, Luís Rocha Lopes
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0091793

The Cellular Distribution and Ser262 Phosphorylation of Tau Protein Are Regulated by BDNF In Vitro
Cited by: 19
Author(s): Qian Chen, Zhou Zhou, Lei Zhang, Shangcheng Xu, Chunhai Chen, Zhengping Yu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0011474

Worldwide Distribution of the MYH9 Kidney Disease Susceptibility Alleles and Haplotypes: Evidence of Historical Selection in Africa
Cited by: 33
Author(s): Tarás K. Oleksyk, George W. Nelson, Ping An, Jeffrey B. Kopp, Cheryl A. Winkler
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0007904

Epigenetic Features of Human Mesenchymal Stem Cells Determine Their Permissiveness for Induction of Relevant Transcriptional Changes by SYT-SSX1
Cited by: 42
Author(s): Luisa Cironi, Paolo Provero, Nicola Riggi, Michalina Janiszewska, Domizio Suvà, Mario-Luca Suvà, Vincent Kindler, Ivan Stamenkovic
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0009679

FragKB: Structural and Literature Annotation Resource of Conserved Peptide Fragments and Residues
Cited by: 7
Author(s): Ashish V. Tendulkar, Martin Krallinger, Victor de la Torre, Gonzalo López, Pramod P. Wangikar, Alfonso Valencia
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0021975

Lentiviral Mediated Transgenesis by In Vivo Manipulation of Spermatogonial Stem Cells
Cited by: 26
Author(s): Lalit Sehgal, Rahul Thorat, Nileema Khapare, Amitabha Mukhopadhaya, Mayur Sawant, Sorab N. Dalal
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0019304

Diagnosis of Indian Visceral Leishmaniasis by Nucleic Acid Detection Using PCR
Cited by: 69
Author(s): Pankaj Srivastava, Sanjana Mehrotra, Puja Tiwary, Jaya Chakravarty, Shyam Sundar
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0153453

An Improved microRNA Annotation of the Canine Genome
Cited by: 20
Author(s): Luca Penso-Dolfin, Ross Swofford, Jeremy Johnson, Jessica Alföldi, Kerstin Lindblad‐Toh, David Swarbreck, Simon Moxon, Federica Di Palma
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0001803

Integrative Genome-Wide Expression Analysis Bears Evidence of Estrogen Receptor-Independent Transcription in Heregulin-Stimulated MCF-7 Cells
Cited by: 7
Author(s): Takeshi Nagashima, Tsuyoshi Suzuki, Shinji Kondo, Yoshio Kuroki, Kaoru Takahashi, Kaori Ide, Noriko Yumoto, Asako Hasegawa, Tetsuro Toyoda, Toshio Kojima, Akihiko Konagaya, Harukazu Suzuki, Yoshihide Hayashizaki, Yoshiyuki Sakaki, Mariko Hatakeyama
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0049705

Whole-Transcriptome Sequencing Identifies Novel IRF2BP2-CDX1 Fusion Gene Brought about by Translocation t(1;5)(q42;q32) in Mesenchymal Chondrosarcoma
Cited by: 75
Author(s): Kaja Beate Nyquist, Ioannis Panagopoulos, Jim Thorsen, Lisbeth Haugom, Ludmila Gorunova, Bodil Bjerkehagen, Alexander Fosså, Marianne Guriby, Torfinn Nome, Ragnhild Lothe, Rolf Inge Skotheim, Sverre Heim, Francesca Micci
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0171262

Serum response factor regulates smooth muscle contractility via myotonic dystrophy protein kinases and L-type calcium channels
Cited by: 21
Author(s): Moon Young Lee, Chanjae Park, Se Eun Ha, Paul J. Park, Robyn M. Berent, Brian G. Jorgensen, Robert D. Corrigan, Nathan Grainger, Peter J. Blair, Orazio J. Slivano, Joseph M. Miano, Sean M. Ward, Terence K. Smith, Kenton M. Sanders, Seungil Ro
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0219576

Distribution of endogenous gammaretroviruses and variants of the Fv1 restriction gene in individual mouse strains and strain subgroups
Cited by: 3
Author(s): Matthew Skorski, Devinka Bamunusinghe, Qingping Liu, Esther Shaffer, Christine A. Kozak
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0045364

5-Aza-2′-deoxycytidine Leads to Reduced Embryo Implantation and Reduced Expression of DNA Methyltransferases and Essential Endometrial Genes
Cited by: 43
Author(s): Yubin Ding, Long Chen, Xueqing Liu, Xuemei Chen, Liang-Rui Guo, Yinyin Xia, Junlin He, Yingxiong Wang
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0103020

IthaGenes: An Interactive Database for Haemoglobin Variations and Epidemiology
Cited by: 155
Author(s): Petros Kountouris, Carsten W. Lederer, Pavlos Fanis, Xenia Feleki, John Old, Marina Kleanthous
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0218386

Effects of cessation of cigarette smoking on eicosanoid biomarkers of inflammation and oxidative damage
Cited by: 17
Author(s): Joseph P. McElroy, Steven G. Carmella, Alisa K. Heskin, Man‐Lai Tang, Sharon E. Murphy, Sarah A. Reisinger, Joni Jensen, Dorothy K. Hatsukami, Stephen S. Hecht, Peter G. Shields
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0019212

Domestication of Transposable Elements into MicroRNA Genes in Plants
Cited by: 94
Author(s): Li V. Yang, Chaoqun Li, Jie Xia, Youxin Jin
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0040959

Gene Expression Profiling Identifies HOXB4 as a Direct Downstream Target of GATA-2 in Human CD34+ Hematopoietic Cells
Cited by: 15
Author(s): Tohru Fujiwara, Hisayuki Yokoyama, Yoko Okitsu, Makoto Kamata, Noriko Fukuhara, Yasushi Onishi, Shin Fujimaki, Shinichiro Takahashi, Kenichi Ishizawa, Emery H. Bresnick, Hideo Harigae
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0032590

Gene Expression of the Tumour Suppressor LKB1 Is Mediated by Sp1, NF-Y and FOXO Transcription Factors
Cited by: 34
Author(s): Nicolas Lützner, Johanna De-Castro Arce, Frank Rösl
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0042180

An Overgrowth Disorder Associated with Excessive Production of cGMP Due to a Gain-of-Function Mutation of the Natriuretic Peptide Receptor 2 Gene
Cited by: 95
Author(s): Kouji Miura, Noriyuki Namba, M. Fujiwara, Yasuhisa Ohata, Hidekazu Ishida, Taichi Kitaoka, Takuo Kubota, Haruhiko Hirai, Chikahisa Higuchi, Noriyuki Tsumaki, Hideki Yoshikawa, Norio Sakai, Toshimi Michigami, Keiichi Ozono
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0133988

Social Exclusion Changes Histone Modifications H3K4me3 and H3K27ac in Liver Tissue of Wild House Mice
Cited by: 3
Author(s): Linda Krause, Bernhard Haubold, Angelika Börsch-Haubold
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0035839

The RIP140 Gene Is a Transcriptional Target of E2F1
Cited by: 22
Author(s): Aurélie Docquier, Patrick Augereau, Marion Lapierre, Pierre-Olivier Harmand, Éric Badia, Jean-Sébastien Annicotte, Lluís Fajas, Vincent Cavaillès
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0165559

Genetic and Epigenetic Regulation of TOX3 Expression in Breast Cancer
Cited by: 23
Author(s): Yoo-Jeong Han, Jing Zhang, Yonglan Zheng, Dezheng Huo, Olufunmilayo I. Olopade
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0019174

Ascl1/Mash1 Is a Novel Target of Gli2 during Gli2-Induced Neurogenesis in P19 EC Cells
Cited by: 47
Author(s): Anastassia Voronova, Fischer Anna, Ryan Tj, Ashraf Al Madhoun, Ilona S. Skerjanc
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0019891

Physical Confirmation and Mapping of Overlapping Rat Mammary Carcinoma Susceptibility QTLs, Mcs2 and Mcs6
Cited by: 8
Author(s): Jennifer Sanders, Jill D. Haag, David J. Samuelson
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0105382

Copy Number Variation Analysis on a Non-Hodgkin Lymphoma Case-Control Study Identifies an 11q25 Duplication Associated with Diffuse Large B-Cell Lymphoma
Cited by: 17
Author(s): Lucía Conde, Jacques Riby, Jianqing Zhang, Paige M. Bracci, Christine F. Skibola
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0136749

Genome-Wide Scan for Visceral Leishmaniasis in Mixed-Breed Dogs Identifies Candidate Genes Involved in T Helper Cells and Macrophage Signaling
Cited by: 19
Author(s): Yuri Tani Utsunomiya, Érica S. Ribeiro, Amanda Pífano Neto Quintal, Juliano Rodrigues Sangalli, Valquiria R. Gazola, Henrique Borges de Paula, Cristiana T. Trinconi, Valéria Marçal Felix de Lima, S. H. V. Perri, Jeremy F. Taylor, Robert D. Schnabel, Tad S. Sonstegard, José Fernando Garcia, Cáris Maroni Nunes
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0000643

The Cis-regulatory Logic of the Mammalian Photoreceptor Transcriptional Network
Cited by: 136
Author(s): Timothy H.-C. Hsiau, Claudiu Diaconu, Connie A. Myers, Jongwoo Lee, Constance L. Cepko, Joseph C. Corbo
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0143212

GWA Mapping of Anthocyanin Accumulation Reveals Balancing Selection of MYB90 in Arabidopsis thaliana
Cited by: 23
Author(s): Johanna A. Bac-Molenaar, E.F. Fradin, Juriaan Rienstra, D. Vreugdenhil, Joost J. B. Keurentjes
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0018969

Variation in Array Size, Monomer Composition and Expression of the Macrosatellite DXZ4
Cited by: 19
Author(s): Deanna C. Tremblay, Shawn C. Moseley, Brian P. Chadwick
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0075344

Integration Profile and Safety of an Adenovirus Hybrid-Vector Utilizing Hyperactive Sleeping Beauty Transposase for Somatic Integration
Cited by: 33
Author(s): Wenli Zhang, Martin Mück-Häusl, Jichang Wang, Chuanbo Sun, Maren Gebbing, Csaba Miskey, Zoltán Ivics, Zsuzsanna Izsvák, Anja Ehrhardt
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0129811

A Novel Locus for Ectodermal Dysplasia of Hair, Nail and Skin Pigmentation Anomalies Maps to Chromosome 18p11.32-p11.31
Cited by: 2
Author(s): Rabia Habib, Muhammad Ansar, Manuel Mattheisen, Muhammad Shahid, Ghazanfar Ali, Wasim Ahmad, Regina C. Betz
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0105723

Effects of GWAS-Associated Genetic Variants on lncRNAs within IBD and T1D Candidate Loci
Cited by: 69
Author(s): Aashiq H. Mirza, Simranjeet Kaur, Caroline Brorsson, Flemming Pociot
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0108652

Genome-Wide Mapping of Yeast Histone Chaperone Anti-Silencing Function 1 Reveals Its Role in Condensin Binding with Chromatin
Cited by: 7
Author(s): Pooran Singh Dewari, Poonam Bhargava
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0153333

Neofunctionalization of Chromoplast Specific Lycopene Beta Cyclase Gene (CYC-B) in Tomato Clade
Cited by: 13
Author(s): Vijee Mohan, Arun K. Pandey, Yellamaraju Sreelakshmi, Rameshwar Sharma
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0000658

A Unique Role for Nonmuscle Myosin Heavy Chain IIA in Regulation of Epithelial Apical Junctions
Cited by: 144
Author(s): Andrei I. Ivanov, Moshe Bachar, Brian A. Babbin, Robert S. Adelstein, Asma Nusrat, Charles A. Parkos
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0207984

Leucine rich repeat kinase 2 (LRRK2) GLY2019SER mutation is absent in a second cohort of Nigerian Africans with Parkinson disease
Cited by: 16
Author(s): Njideka Okubadejo, Mie Rizig, Oluwadamilola O. Ojo, Hallgeir Jonvik, Olajumoke Oshinaike, Emmeline Brown, Henry Houlden
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0049570

The CREB-miR-9 Negative Feedback Minicircuitry Coordinates the Migration and Proliferation of Glioma Cells
Cited by: 81
Author(s): Xiaochao Tan, Shan Wang, Bin Yang, Liyuan Zhu, Bin Yin, Tengfei Chao, Jizong Zhao, Jing Yuan, Boqin Qiang, Xiaozhong Peng
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0165694

The Conserved Dcw Gene Cluster of R. sphaeroides Is Preceded by an Uncommonly Extended 5’ Leader Featuring the sRNA UpsM
Cited by: 17
Author(s): Lennart Weber, Clemens Thoelken, Marcel Volk, Bernhard Remes, Marcus Lechner, Gabriele Klug
Software Mentions: 1
Published: about 8 years ago

10.3390/cancers12030661

Characterization of Human NK Cell-Derived Exosomes: Role of DNAM1 Receptor in Exosome-Mediated Cytotoxicity against Tumor
Cited by: 89
Author(s): Anna Pace, Nicola Tumino, Francesca Besi, Claudia Alicata, Libenzio Adrian Conti, Enrico Munari, Enrico Maggi, Paola Vacca, Alessandro Moretta
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers13092207

TET2 Inhibits PD-L1 Gene Expression in Breast Cancer Cells through Histone Deacetylation
Cited by: 15
Author(s): Yinghui Shen, Lu Liu, Mengyuan Wang, Bo Xu, Ruitu Lyu, Yujiang Geno Shi, Li Tan
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers5030998

The Interactions of microRNA and Epigenetic Modifications in Prostate Cancer
Cited by: 31
Author(s): Prashant Singh, Moray J. Campbell
Software Mentions: 1
Published: over 11 years ago

10.3390/cancers4041180

Annotating Cancer Variants and Anti-Cancer Therapeutics in Reactome
Cited by: 257
Author(s): Marija Milacic, Robin Haw, Karen Rothfels, Guanming Wu, David Croft, Henning Hermjakob, Peter D’Eustachio, Lincoln Stein
Software Mentions: 1
Published: about 12 years ago

10.1038/s41418-019-0288-7

MALAT1-KTN1-EGFR regulatory axis promotes the development of cutaneous squamous cell carcinoma
Cited by: 38
Author(s): Ying Zhang, Lin Gao, Shudong Ma, Ji Ma, Yinghui Wang, Shanshan Li, Xia Hu, Shuo Han, Meijuan Zhou, Liang Zhou, Zhenhua Ding
Software Mentions: 1
Published: almost 6 years ago

10.1038/cddis.2016.319

Transactivation of TrkB by Sigma-1 receptor mediates cocaine-induced changes in dendritic spine density and morphology in hippocampal and cortical neurons
Cited by: 29
Author(s): Minhan Ka, Yeon Hee Kook, Ke Liao, Shilpa Buch, Woo Yang Kim
Software Mentions: 1
Published: about 8 years ago

10.1038/s41419-021-03411-6

HOXB4 inhibits the proliferation and tumorigenesis of cervical cancer cells by downregulating the activity of Wnt/β-catenin signaling pathway
Cited by: 14
Author(s): Dan Lei, Wenting Yang, Pan Zheng
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41419-021-03763-z

RNA m6A reader YTHDF2 facilitates lung adenocarcinoma cell proliferation and metastasis by targeting the AXIN1/Wnt/β-catenin signaling
Cited by: 50
Author(s): Yin Li, Hao Sheng, Feng Ma, Qiang Wu, Jianfang Huang, Qiang Chen, Lianghe Sheng, Xinghai Zhu, Xianfang Zhu, Meng Xu
Software Mentions: 1
Published: over 3 years ago

10.1038/cddis.2017.241

Mitochondrial AKAP1 supports mTOR pathway and tumor growth
Cited by: 40
Author(s): Laura Rinaldi, Maria Sepe, Rossella Delle Donne, Kristel Conte, Antonietta Arcella, Domenica Borzacchiello, Stefano Amente, Fernanda De Vita, Monia Porpora, Corrado Garbi, Maria Antonietta Oliva, Claudio Procaccini, Deriggio Faicchia, Giuseppe Matarese, Federica Zito Marino, Gaetano Rocco, Sara Pignatiello, Renato Franco, Luigi Insabato, Barbara Majello, Antonio Feliciello
Software Mentions: 1
Published: over 7 years ago

10.1038/cddis.2016.278

BNC2 is a putative tumor suppressor gene in high-grade serous ovarian carcinoma and impacts cell survival after oxidative stress
Cited by: 14
Author(s): Laura Cesaratto, Eleonora Grisard, Michela Coan, Lorenzo Zandonà, Elena De Mattia, Elena Poletto, Erika Cecchin, Fabio Puglisi, Vincenzo Canzonieri, Maria Teresa Mucignat, Antonella Zucchetto, Gabriele Stocco, Alfonso Colombatti, Milena S. Nicoloso, Riccardo Spizzo
Software Mentions: 1
Published: about 8 years ago

10.1038/s41419-018-0495-z

DNA methylation, through DNMT1, has an essential role in the development of gastrointestinal smooth muscle cells and disease
Cited by: 19
Author(s): Brian G. Jorgensen, Robyn M. Berent, Se Eun Ha, Kotaro Horiguchi, Kent C. Sasse, Laren Becker, Seungil Ro
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-018-0472-6

Long non-coding RNA MUC5B-AS1 promotes metastasis through mutually regulating MUC5B expression in lung adenocarcinoma
Cited by: 45
Author(s): Shuai Yuan, Qingyun Liu, Zhangxue Hu, Zhengyu Zhou, Guilu Wang, Chengying Li, Wenting Xie, Gang Ma, Ying Xiang, Na Wu, Long Wu, Zhengping Yu, Bai Li, Yafei Li
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-021-03480-7

BMP2-dependent gene regulatory network analysis reveals Klf4 as a novel transcription factor of osteoblast differentiation
Cited by: 16
Author(s): Shuaitong Yu, Jian Guo, Zheyi Sun, Chujiao Lin, Huangheng Tao, Qian Zhang, Yu Cui, Huanyan Zuo, Yuxiu Lin, Shuo Chen, Huan Liu, Zhi Chen
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41420-020-00359-y

Oncogenic role of lncRNA CRNDE in acute promyelocytic leukemia and NPM1-mutant acute myeloid leukemia
Cited by: 9
Author(s): Xuefei Ma, Wei Zhang, Ming Zhao, Shufen Li, Ji Wen, Kankan Wang
Software Mentions: 1
Published: about 4 years ago

10.1038/celldisc.2017.35

Methylation of transcription factor YY2 regulates its transcriptional activity and cell proliferation
Cited by: 27
Author(s): Xiaonan Wu, Tao-tao Shi, Yaohui He, Feifei Wang, Rui Sang, Jian Ding, Wen‐juan Zhang, Xing-yi Shu, Hai‐feng Shen, Yi Jia, Xiang Gao, Wen Liu
Software Mentions: 1
Published: about 7 years ago

10.1038/s41421-018-0051-0

A growth factor-free culture system underscores the coordination between Wnt and BMP signaling in Lgr5+ intestinal stem cell maintenance
Cited by: 39
Author(s): Yehua Li, Yuan Liu, Bofeng Liu, Jilian Wang, Shuangqing Wei, Zhengjian Qi, Shan Wang, Wei Fu, Ye-Guang Chen
Software Mentions: 1
Published: about 6 years ago

10.1016/j.chom.2018.01.008

Comparative Heterochromatin Profiling Reveals Conserved and Unique Epigenome Signatures Linked to Adaptation and Development of Malaria Parasites
Cited by: 92
Author(s): Sabine Anne‐Kristin Fraschka, Michael Filarsky, Regina Hoo, Igor Niederwieser, Xue Yan Yam, Nicolas M. B. Brancucci, Franziska Mohring, Annals Tatenda Mushunje, Xiucai Huang, Peter Christensen, François Nosten, Zbynek Bozdech, Bruce Russell, Robert W. Moon, Matthias Marti, Peter R. Preiser, Richárd Bártfai, Till S. Voss
Software Mentions: 1
Published: over 6 years ago

10.1007/s00018-017-2580-3

Expression of a SOX1 overlapping transcript in neural differentiation and cancer models
Cited by: 21
Author(s): Azaz Ahmad, Stephanie Strohbuecker, Cristina Tufarelli, Virginie Sottile
Software Mentions: 1
Published: over 7 years ago

10.1016/j.celrep.2017.05.005

RUNX1-ETO and RUNX1-EVI1 Differentially Reprogram the Chromatin Landscape in t(8;21) and t(3;21) AML
Cited by: 42
Author(s): Justin Loke, Salam A. Assi, Maria Rosaria Imperato, Anetta Ptasińska, Pierre Cauchy, Yura Grabovska, N Martinez Soria, Manoj Raghavan, H.R. Delwel, Peter N. Cockerill, Olaf Heidenreich, Constanze Bonifer
Software Mentions: 1
Published: over 7 years ago

10.1016/j.stem.2012.06.008

Esrrb Is a Pivotal Target of the Gsk3/Tcf3 Axis Regulating Embryonic Stem Cell Self-Renewal
Cited by: 347
Author(s): Graziano Martello, Toshimi Sugimoto, Evangelia Diamanti, Anagha Joshi, Rebecca Hannah, Satoshi Ohtsuka, Berthold Göttgens, Hitoshi Niwa, Austin Smith
Software Mentions: 1
Published: about 12 years ago

10.3390/cells9030711

miR-7 Controls the Dopaminergic/Oligodendroglial Fate through Wnt/β-catenin Signaling Regulation
Cited by: 17
Author(s): Lavanya Adusumilli, Nicola Facchinello, Cathleen Teh, Giorgia Busolin, Minh Tn Le, Henry Yang, Giorgia Beffagna, Stefano Campanaro, Wai Leong Tam, Francesco Argenton, Bing Lim, Vladimir Korzh, Natascia Tiso
Software Mentions: 1
Published: over 4 years ago

10.3390/cells9102149

In Vitro Studies to Define the Cell-Surface and Intracellular Targets of Polyarginine-Conjugated Sodium Borocaptate as a Potential Delivery Agent for Boron Neutron Capture Therapy
Cited by: 17
Author(s): Akiko Fujimura, Seiji Yasui, Kazuyo Igawa, Atsushi Ueda, K. Watanabe, Tadashi Hanafusa, Ichikawa Yasuaki, Sachiko Yoshihashi, Koji Tsuchida, Atsunori Kamiya, Shinichi Furuya
Software Mentions: 1
Published: about 4 years ago

10.3390/cells6030021

Studying Autophagy in Zebrafish
Cited by: 48
Author(s): Benan John Mathai, Annemarie H. Meijer, Anne Simonsen
Software Mentions: 1
Published: over 7 years ago

10.3390/cells10010094

Context Matters: NOTCH Signatures and Pathway in Cancer Progression and Metastasis
Cited by: 43
Author(s): Julia O. Misiorek, Alicja Przybyszewska-Podstawka, Joanna Kałafut, Beata Paziewska, Katarzyna Rolle, Adolfo Rivero-Müller, Matthias Nees
Software Mentions: 1
Published: almost 4 years ago

10.3390/cells8080908

Myeloid Krüppel-Like Factor 2 Critically Regulates K/BxN Serum-Induced Arthritis
Cited by: 11
Author(s): Manjusri Das, Moonmoon Deb, Dipranjan Laha, Matthew Joseph, Kanji Sugita, Rashmi Aggarwal, O. Hans Iwenofu, Vincent J. Pompili, Wael Jarjour, Hiranmoy Das
Software Mentions: 1
Published: over 5 years ago

10.3390/cells8111360

HOXA9 Transcriptionally Promotes Apoptosis and Represses Autophagy by Targeting NF-κB in Cutaneous Squamous Cell Carcinoma
Cited by: 21
Author(s): Shuo Han, Li Xue, Xiaoting Liang, Liang Zhou
Software Mentions: 1
Published: about 5 years ago

10.3390/cells9030789

The Switch from NF-YAl to NF-YAs Isoform Impairs Myotubes Formation
Cited by: 9
Author(s): Debora Libetti, Andrea Bernardini, Sarah Sertic, Graziella Messina, Diletta Dolfini, Roberto Mantovani
Software Mentions: 1
Published: over 4 years ago

10.3390/cells8080778

Exposure to Ionizing Radiation Triggers Prolonged Changes in Circular RNA Abundance in the Embryonic Mouse Brain and Primary Neurons
Cited by: 15
Author(s): André Claude Mbouombouo Mfossa, Helene Thekkekara Puthenparampil, Auchi Inalegwu, Amelie Coolkens, Sarah Baatout, Mohammed Abderrafi Benotmane, Danny Huylebroeck, Roel Quintens
Software Mentions: 1
Published: over 5 years ago

10.3390/cells9020474

RNA-Guided Genomic Localization of H2A.L.2 Histone Variant
Cited by: 10
Author(s): Naghmeh Hoghoughi, Sophie Barral, Sandrine Curtet, Florent Chuffart, Guillaume Charbonnier, Denis Puthier, T. Buchou, Sophie Rousseaux, Saadi Khochbin
Software Mentions: 1
Published: almost 5 years ago

10.3390/cells9041061

Modification of Adenosine196 by Mettl3 Methyltransferase in the 5’-External Transcribed Spacer of 47S Pre-rRNA Affects rRNA Maturation
Cited by: 10
Author(s): Olga V. Sergeeva, Philipp Sergeev, Pavel Melnikov, Tatiana Prikazchikova, Olga А. Dontsova, Timofei S. Zatsepin
Software Mentions: 1
Published: over 4 years ago

10.1186/s12998-018-0191-1

The prevalence of the term subluxation in chiropractic degree program curricula throughout the world
Cited by: 18
Author(s): Matthew F. Funk, Aric J. Frisina-Deyo, Timothy A. Mirtz, Stephen M. Perle
Software Mentions: 1
Published: over 6 years ago

10.1002/ccr3.2509

Second‐trimester prenatal diagnosis of Nager syndrome with a deletion including <i>SF3B4</i> detected by chromosomal microarray
Cited by: 5
Author(s): Małgorzata Drożniewska, Mark D. Kilby, Julie Vogt, Fiona S. Togneri, E Quinlan-Jones, Lisa Reali, Stephanie Allen, Dominic McMullan
Software Mentions: 1
Published: almost 5 years ago

10.1186/1868-7083-4-24

Evidence for transcript-specific epigenetic regulation of glucocorticoid-stimulated skeletal muscle 11β-hydroxysteroid dehydrogenase-1 activity in type 2 diabetes
Cited by: 4
Author(s): Warrick J. Inder, Varuni R. Obeyesekere, Choon‐Gon Jang, Richard Saffery
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13148-018-0484-1

GLI2 promoter hypermethylation in saliva of children with a respiratory allergy
Cited by: 16
Author(s): Sabine A. S. Langie, Matthieu Moisse, Katarzyna Szarc vel Szic, Ellen van der Plas, Gudrun Koppen, Sofie De Prins, Tijs Louwies, Vera Nelen, Guy Van Camp, Diether Lambrechts, Greet Schoeters, Wim Vanden Berghe, Patrick De Boever
Software Mentions: 1
Published: over 6 years ago

10.1186/s13148-020-00960-z

Changes in DNA methylation profiles of myalgic encephalomyelitis/chronic fatigue syndrome patients reflect systemic dysfunctions
Cited by: 22
Author(s): Amber Helliwell, Eiren Sweetman, Peter A. Stockwell, Christina D. Edgar, Aniruddha Chatterjee, Warren P. Tate
Software Mentions: 1
Published: about 4 years ago

10.1186/s13148-017-0366-y

Regulating role of fetal thyroid hormones on placental mitochondrial DNA methylation: epidemiological evidence from the ENVIRONAGE birth cohort study
Cited by: 19
Author(s): Bram G. Janssen, Hyang‐Min Byun, Harry Roels, Wilfried Gyselaers, Joris Penders, Andrea A. Baccarelli, Tim S. Nawrot
Software Mentions: 1
Published: over 7 years ago

10.1186/s13148-016-0254-x

Identification of a methylation profile for DNMT1-associated autosomal dominant cerebellar ataxia, deafness, and narcolepsy
Cited by: 61
Author(s): Kristin D. Kernohan, Laila C. Schenkel, Lijia Huang, Amanda Smith, Guillaume Paré, Peter Ainsworth, Kym M. Boycott, Jodi Warman‐Chardon, Bekim Sadiković
Software Mentions: 1
Published: about 8 years ago

10.1186/s13148-016-0190-9

MSRE-HTPrimer: a high-throughput and genome-wide primer design pipeline optimized for epigenetic research
Cited by: 6
Author(s): Ram Vinay Pandey, Walter Pulverer, Rainer Kallmeyer, Gabriel Beikircher, Stephan Pabinger, Albert Kriegner, Andreas Weinhäusel
Software Mentions: 1
Published: over 8 years ago

10.1186/s40885-017-0069-x

Association of angiotensinogen gene SNPs and haplotypes with risk of hypertension in eastern Indian population
Cited by: 26
Author(s): Pulakes Purkait, K. C. Halder, Parimalam Kumar, Anwesha Roy, Pradip Raychaudhuri, S Bhattacharya, Biswanath Sarkar, J. M. Naidu
Software Mentions: 1
Published: over 7 years ago

10.1186/1559-0275-11-5

Proteogenomic analysis of pathogenic yeast Cryptococcus neoformans using high resolution mass spectrometry
Cited by: 18
Author(s): Lakshmi Dhevi N. Selvan, Jyothi Embekkat Kaviyil, Raja Sekhar Nirujogi, Babylakshmi Muthusamy, Vinuth N Puttamallesh, Tejaswini Subbannayya, Nazia Syed, Aneesha Radhakrishnan, Dhanashree S. Kelkar, Sartaj Ahmad, Sneha M. Pinto, Praveen Kumar, Anil K. Madugundu, Bipin Nair, Aditi Chatterjee, Akhilesh Pandey, Raju Ravikumar, Harsha Gowda, T. S. Keshava Prasad
Software Mentions: 1
Published: almost 11 years ago

10.1155/2011/910769

The Influence of 3′UTRs on MicroRNA Function Inferred from Human SNP Data
Cited by: 29
Author(s): Zihua Hu, Andrew E. Bruno
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13054-020-03146-4

The circular RNA landscape in specific peripheral blood mononuclear cells of critically ill patients with sepsis
Cited by: 9
Author(s): Hina Khan, Xanthe Brands, Simona Aufiero, Arie J. Hoogendijk, Augustijn M. Klarenbeek, Tjitske S. R. van Engelen, Bastiaan W. Haak, Lonneke A. van Vught, Janneke Horn, Marcus J. Schultz, Aeilko H. Zwinderman, Tom van der Poll, Brendon P. Scicluna
Software Mentions: 1
Published: over 4 years ago

10.1016/j.ceb.2010.03.004

Genome architecture and the role of transcription
Cited by: 47
Author(s): Argyris Papantonis, Peter R. Cook
Software Mentions: 1
Published: over 14 years ago

10.1093/dnares/dsz006

Developmental atlas of the RNA editome in Sus scrofa skeletal muscle
Cited by: 15
Author(s): Yalan Yang, Min Zhu, Xinhao Fan, Yilong Yao, Junyu Yan, Yijie Tang, Siyuan Liu, Kui Li, Zhonglin Tang
Software Mentions: 1
Published: over 5 years ago

10.1093/dnares/dsv011

Whole-genome resequencing analyses of five pig breeds, including Korean wild and native, and three European origin breeds
Cited by: 50
Author(s): Jung‐Woo Choi, Won‐Hyong Chung, Kyung-Tai Lee, Eun Seok Cho, Si-Woo Lee, Bong-Hwan Choi, Sang‐Heon Lee, Won-Jun Lim, Dajeong Lim, Yun-Gyeong Lee, Joon-Ki Hong, Doo-Wan Kim, Hyeon-Jeong Jeon, Jiwoong Kim, Namshin Kim, Tae-Hun Kim
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2017.05.050

Datasets on the genomic positions of the MLL1 morphemes, the ZFP57 binding site, and ZFBS-Morph overlaps in the build mm9 of the mouse genome
Cited by: 5
Author(s): Minou Bina, Phillip Wyss, Carol X. Song
Software Mentions: 1
Published: over 7 years ago

10.1016/j.dib.2016.02.053

Supporting data for characterization of non-coding RNAs associated with the Neuronal growth regulator 1 (NEGR1) adhesion protein
Cited by: 2
Author(s): Prameet Kaur, Jun Tan, Dwi Setyowati Karolina, Sugunavathi Sepramaniam, Arunmozhiarasi Armugam, Tsun-Hon Peter Wong, Kandiah Jeyaseelan
Software Mentions: 1
Published: over 8 years ago

10.1093/database/bat072

HTS-DB: an online resource to publish and query data from functional genomics high-throughput siRNA screening projects
Cited by: 1
Author(s): Rebecca E. Saunders, Rachael Instrell, Rossella Rispoli, Ming Jiang, Michael Howell
Software Mentions: 1
Published: almost 12 years ago

10.1093/database/bat087

DBM-DB: the diamondback moth genome database
Cited by: 59
Author(s): Weiqi Tang, Liying Yu, Weiyi He, Yang Guang, Fushi Ke, Simon W. Baxter, Shijun You, Carl J. Douglas, Minsheng You
Software Mentions: 1
Published: almost 11 years ago

10.1093/database/baz145

Strengthening of banana breeding through data digitalization
Cited by: 3
Author(s): Balasubramanian Vignesh Kumar, S. Backiyarani, A. Chandrasekar, Swaminathan Saranya, D. Ramajayam, M. Saraswathi, P. Durai, S. Kalpana, S. Uma
Software Mentions: 1
Published: almost 5 years ago

10.1093/database/bay047

A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae
Cited by: 1
Author(s): Junkyoung Choe, Jieun Kim, Bongwoo Lee, Jeong-Hee Lee, Moon Suk Nam, Youn‐Il Park, Sung-Hwan Jo
Software Mentions: 1
Published: almost 7 years ago

10.1093/database/baz146

KRGDB: the large-scale variant database of 1722 Koreans based on whole genome sequencing
Cited by: 32
Author(s): Kwang Su Jung, Kyung‐Won Hong, Hyun Youn Jo, Jongpill Choi, Hyo-Jeong Ban, Seongbeom Cho, Myungguen Chung
Software Mentions: 1
Published: almost 5 years ago

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