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10.1186/s13256-018-1608-0

Novel compound heterozygote mutations in the ATP7B gene in an Iranian family with Wilson disease: a case report
Cited by: 8
Author(s): Omid Daneshjoo, Masoud Garshasbi
Software Mentions: 1
Published: over 6 years ago

10.1007/s12031-018-1044-z

The Regulation of Monoamine Oxidase A Gene Expression by Distinct Variable Number Tandem Repeats
Cited by: 19
Author(s): Maurizio Manca, Veridiana Pessoa, Ana Illera Lopez, Patrick T. Harrison, Fábio Miyajima, Helen Sharp, Andrew Pickles, Jonathan Hill, Chris Murgatroyd, Vivien J. Bubb, John P. Quinn
Software Mentions: 1
Published: over 6 years ago

10.18502/jovr.v15i2.6730

Screening for Novel LOX and SOD1 Variants in Keratoconus Patients from Brazil
Cited by: 8
Author(s): Diego Nery Benevides Gadelha, Alex Felipe Barbosa Feitosa, Rafaela Gomes da Silva, Luana Talita Antunes, Matheus Cavalcanti Muniz, Matheus Alencar de Oliveira, Dáfine de Oliveira Andrade, Nathalia Mayanna da Paz Silva, Sebastião Cronemberger, Bruno Luiz Fonseca Schamber-Reis
Software Mentions: 1
Published: over 4 years ago

10.1016/j.isci.2019.10.055

Deciphering the Gene Regulatory Landscape Encoded in DNA Biophysical Features
Cited by: 7
Author(s): Abhijeet Pataskar, Willem Vanderlinden, Johannes Friedrich Emmerig, Aditi Singh, Jan Lipfert, Vijay Tiwari
Software Mentions: 1
Published: about 5 years ago

10.1186/s13048-021-00834-9

p38β - MAPK11 and its role in female cancers
Cited by: 11
Author(s): Periklis Katopodis, Rachel Kerslake, Athanasios Zikopoulos, Nefeli Eirini Beri, Vladimir Anikin
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.7715

P300 acetyltransferase regulates fatty acid synthase expression, lipid metabolism and prostate cancer growth
Cited by: 41
Author(s): Xiaokun Gang, Yinhui Yang, Jian Zhong, Kui Jiang, Yunqian Pan, Jeffrey Karnes, Jun Zhang, Wanhai Xu, Guixia Wang, Haojie Huang
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.7937

Tumor-promoting function and prognostic significance of the RNA-binding protein T-cell intracellular antigen-1 in esophageal squamous cell carcinoma
Cited by: 17
Author(s): Junichi Hamada, Katsutoshi Shoda, Kiyoshi Masuda, Yuji Fujita, Takuya Naruto, Tomohiro Kohmoto, Yuko Miyakami, Miki Watanabe, Yasusei Kudo, Hitoshi Fujiwara, Daisuke Ichikawa, Eigo Otsuji, Issei Imoto
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.7764

Associations between polymorphisms of long non-coding RNA MEG3 and risk of colorectal cancer in Chinese
Cited by: 53
Author(s): Xin Cao, Shulin Zhuang, Yong Hu, Xi Liu, Lichun Deng, Sheng Huaming, Weisheng Shen
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.11324

The cytokine-cosmc signaling axis upregulates the tumor-associated carbohydrate antigen Tn
Cited by: 4
Author(s): Chia Wen Ho, Chia‐Hua Lin, Yi Wei Liaw, Hsiao Ling Chiang, Yu Tang Chin, Rui Huang, Hung Cheng Lai, Yaw Wen Hsu, Po Jan Kuo, Chiao-En Chen, Hung Yun Lin, Jacqueline Whang‐Peng, Shin Nieh, Earl Fu, Leroy F. Liu, Jaulang Hwang
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.13746

An annotated list of bivalent chromatin regions in human ES cells: a new tool for cancer epigenetic research
Cited by: 41
Author(s): Franck Court, Philippe Arnaud
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.13720

Design and implementation of a mobile system for lung cancer patient follow-up in China and initial report of the ongoing patient registry
Cited by: 10
Author(s): Xiangyun Ye, Wei Hua Jia, Ziming Li, Xiaomin Niu, Jiemin Wang, Yunqin Chen, Zong-Ming Guo, Shun Lü
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.15571

Predictive analysis of long non-coding RNA expression profiles in diffuse large B-cell lymphoma
Cited by: 19
Author(s): Dan-Xia Zhu, Cheng Fang, Xiaodong Li, Yiting Geng, Ruiqi Li, Chen Wu, Jingting Jiang, Changping Wu
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.15478

NOMO-1 gene is deleted in early-onset colorectal cancer
Cited by: 16
Author(s): José Perea, Juan Luis Garcı́a, Javier Bajo Pérez, Daniel Rueda, María Arriba, Yolanda Rodríguez, Miguel Urioste, Rogelio González-Sarmiento
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.15695

Immunocompetent mouse allograft models for development of therapies to target breast cancer metastasis
Cited by: 72
Author(s): Yuan Yang, Howard H. Yang, Ying Hu, Peter H. Watson, Huaitian Liu, Thomas Geiger, Miriam R. Anver, Diana C. Haines, Philip Martin, Jeffrey E. Green, Maxwell P. Lee, Kent W. Hunter, Lalage M. Wakefield
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.17399

Clinically significant sub-clonality for common drivers can be detected in 26% of KRAS/EGFR mutated lung adenocarcinomas
Cited by: 4
Author(s): Einav Simon, Tova Bick, Shada Sarji, Talia Shentzer, Elad Prinz, Liza Yehiam, Edmond Sabo, Ofer Ben‐Izhak, Dov Hershkovitz
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.14175

Expression analysis of microRNA as prognostic biomarkers in colorectal cancer
Cited by: 46
Author(s): Jie Yang, Dongling Ma, Andrew Fesler, Haiyan Zhai, Apisri Leamniramit, Wenzhe Li, Song Wu, Jingfang Ju
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.17826

C1orf64 is a novel androgen receptor target gene and coregulator that interacts with 14-3-3 protein in breast cancer
Cited by: 11
Author(s): Ali Naderi
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.17740

TUBB3 overexpression has a negligible effect on the sensitivity to taxol in cultured cell lines
Cited by: 17
Author(s): Mihoko A. Tame, Anna G. Manjón, Daria Belokhvostova, Jonne A. Raaijmakers, René H. Medema
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.20340

LINC00461, a long non-coding RNA, is important for the proliferation and migration of glioma cells
Cited by: 35
Author(s): Yong Yang, Mingxin Ren, Song Chen, Dan Li, Shahid Hussain Soomro, Yajie Xiong, Hongfeng Zhang, Hui Fu
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.21272

MicroRNA-212/ABCG2-axis contributes to development of imatinib-resistance in leukemic cells
Cited by: 19
Author(s): Meike Kaehler, Johanna Ruemenapp, Daniel Gonnermann, Inga Nagel, Oliver Bruhn, Sierk Haenisch, Ole Ammerpohl, Daniela Wesch, Ingolf Cascorbi, Henrike Bruckmueller
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.20115

Long non-coding RNA polymorphisms in 6p21.1 are associated with atrophic gastritis risk and gastric cancer prognosis
Cited by: 9
Author(s): Zhi Lv, Liping Sun, Qian Xu, Yuehua Gong, Jingjing Jing, Chengzhong Xing, Yuan Yuan
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.21469

Deregulated c-Myc requires a functional HSF1 for experimental and human hepatocarcinogenesis
Cited by: 15
Author(s): Antonio Cigliano, Maria G. Pilo, Lei Li, Gavinella Latte, Marta Szydlowska, Maria M. Simile, Panagiotis Paliogiannis, Li Che, Giovanni Mario Pes, Giuseppe Palmieri, Maria Cristina Sini, Antonio Cossu, Alberto Porcu, Gianpaolo Vidili, Maria A. Seddaiu, Rosa M. Pascale, Silvia Ribback, Frank Dombrowski, Xin Chen, Diego F. Calvisi
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.22245

Loss of p53-inducible long non-coding RNA LINC01021 increases chemosensitivity
Cited by: 13
Author(s): Markus Kaller, Ursula Götz, Heiko Hermeking
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.22630

Identification of potential genetic causal variants for rheumatoid arthritis by whole-exome sequencing
Cited by: 19
Author(s): Ying Liu, Elaine Lai‐Han Leung, Hudan Pan, Xiaojun Yao, Qingchun Huang, Min Wu, Ting Xu, Yuwei Wang, Jun Cai, Runze Li, Wei Liu, Liang Liu
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.23643

Zinc finger protein 598 inhibits cell survival by promoting UV-induced apoptosis
Cited by: 2
Author(s): Qinghua Yang, Romi Gupta
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.25940

A novel molecular mechanism for a long non-coding RNA PCAT92 implicated in prostate cancer
Cited by: 5
Author(s): Pushpinder Bawa, Samathmika Ravi, Swagatika Paul, Bibha Chaudhary, Subhashini Srinivasan
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.27152

Safety evaluation of conditionally immortalized cells for renal replacement therapy
Cited by: 5
Author(s): Milos Mihajlovic, Sam Hariri, Koen C.G. Westphal, Manoe J. Janssen, Miriam J Oost, Laura Bongiovanni, Lambertus P. van den Heuvel, Alain de Bruin, Luuk B. Hilbrands, Rosalinde Masereeuw
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.28037

Diverse transcriptional regulation and functional effects revealed by CRISPR/Cas9-directed epigenetic editing
Cited by: 3
Author(s): Miguel Vizoso, Jacco van Rheenen
Software Mentions: 1
Published: over 3 years ago

10.3390/jpm11060468

Association of LINC00673 Genetic Variants with Progression of Oral Cancer
Cited by: 15
Author(s): Shih‐Chi Su, Chiao‐Wen Lin, Po‐Chung Ju, Lun‐Ching Chang, Chun‐Yi Chuang, Yu-Fan Liu, Ming‐Ju Hsieh
Software Mentions: 1
Published: over 3 years ago

10.3390/jpm11030231

The Epidemiology and Genetics of Hyperuricemia and Gout across Major Racial Groups: A Literature Review and Population Genetics Secondary Database Analysis
Cited by: 45
Author(s): Faven Butler, Ali Alghubayshi, Youssef M Roman
Software Mentions: 1
Published: over 3 years ago

10.1186/s40101-018-0169-7

Association of EGLN1 genetic polymorphisms with SpO2 responses to acute hypobaric hypoxia in a Japanese cohort
Cited by: 13
Author(s): Yoshiki Yasukochi, Takayuki Nishimura, Midori Motoi, Shigeki Watanuki
Software Mentions: 1
Published: over 6 years ago

10.1098/rsob.120054

Transcriptome sequencing of black grouse ( Tetrao tetrix ) for immune gene discovery and microsatellite development
Cited by: 26
Author(s): Biao Wang, Robert Ekblom, Todd A. Castoe, Eleanor P. Jones, Radoslav Kozma, Erik Bongcam‐Rudloff, David D. Pollock, Jacob Höglund
Software Mentions: 1
Published: over 12 years ago

10.1098/rsob.180131

DNA methylation subpatterns at distinct regulatory regions in human early embryos
Cited by: 15
Author(s): Rongsong Luo, Chunling Bai, Lei Yang, Zhong Zheng, Guanghua Su, Guang Gao, Zhuying Wei, Yongchun Zuo, Guangpeng Li
Software Mentions: 1
Published: about 6 years ago

10.2174/1874192401711010084

Interpreting the Mechanism of APOE (p.Leu167del) Mutation in the Incidence of Familial Hypercholesterolemia; An In-silico Approach
Cited by: 11
Author(s): Omran M. Rashidi, Fatima Amanullah H.Nazar, Mohamed Nabil Alama, Zuhier Awan
Software Mentions: 1
Published: about 7 years ago

10.1186/1750-1172-7-S2-A11

Speeding up research with the Semantic Web
Cited by: 1
Author(s): Marco Roos, Erik Schultes, Barend Mons
Software Mentions: 1
Published: almost 13 years ago

10.1186/s13023-015-0251-8

Rare diseases in ICD11: making rare diseases visible in health information systems through appropriate coding
Cited by: 84
Author(s): Ségolène Aymé, Bertrand Bellet, Ana Rath
Software Mentions: 1
Published: over 9 years ago

10.1186/s12967-018-1708-z

Mutational and phenotypic spectrum of OTOF-related auditory neuropathy in Koreans: eliciting reciprocal interaction between bench and clinics
Cited by: 17
Author(s): Bong Jik Kim, Jeong Hun Jang, Jin Hee Han, Hye Rim Park, Doo Yi Oh, Seungmin Lee, Min Young Kim, Ah Reum Kim, Chung Lee, Nayoung K.D. Kim, Woong-Yang Park, Yun Hoon Choung, Byung Yoon Choi
Software Mentions: 1
Published: almost 6 years ago

10.1155/2018/7640272

Myoblast Myogenic Differentiation but Not Fusion Process Is Inhibited via MyoD Tetraplex Interaction
Cited by: 5
Author(s): Stefano Testa, Pietro D’Addabbo, Ersilia Fornetti, Roberta Belli, Claudia Fuoco, Sergio Bernardini, Stefano Cannata, Domenico Frezza, Cesare Gargioli
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12986-015-0050-1

Epigenetic effects of casein-derived opioid peptides in SH-SY5Y human neuroblastoma cells
Cited by: 25
Author(s): Malav Suchin Trivedi, Nathaniel Hodgson, Stephen J. Walker, Geert Trooskens, Vineeth Nair, Richard C. Deth
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12986-021-00600-0

Modulation and bioinformatics screening of hepatic mRNA-lncRNAs (HML) network associated with insulin resistance in prediabetic and exercised mice
Cited by: 6
Author(s): Fatemeh Kazeminasab, Seyed Mohammad Marandi, Maryam Baharlooie, Mohammad Hossein Nasr-Esfahani, Kamran Ghaedi
Software Mentions: 1
Published: over 3 years ago

10.3390/nu11020325

Divergent Effectiveness of Multispecies Probiotic Preparations on Intestinal Microbiota Structure Depends on Metabolic Properties
Cited by: 26
Author(s): Michele Biagioli, Daniela Capobianco, Adriana Carino, Silvia Marchianò, Federica Chiara, Patrizia Ricci, Eleonora Distrutti, Stefano Fiorucci
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-017-00301-w

MKL1 defines the H3K4Me3 landscape for NF-κB dependent inflammatory response
Cited by: 47
Author(s): Liming Yu, Fei Fang, Xin Dai, Huihui Xu, Xinming Qi, Mingming Fang, Yong Xu
Software Mentions: 1
Published: over 7 years ago

10.3390/nu5051706

Genome-Wide Association Study of Serum Selenium Concentrations
Cited by: 9
Author(s): Jian Gong, Li Hsu, Tabitha A. Harrison, Irena B. King, Stefan Stürup, Xiaoling Song, David Duggan, Yan Liu, Carolyn M. Hutter, Stephen J. Chanock, Charles B. Eaton, James R. Marshall, Ulrike Peters
Software Mentions: 1
Published: over 11 years ago

10.1038/s41598-017-03067-3

Identification of the functional variant driving ORMDL3 and GSDMB expression in human chromosome 17q12-21 in primary biliary cholangitis
Cited by: 23
Author(s): Yuki Hitomi, Kazuyuki Kojima, M. Kawashima, Yosuke Kawai, Nao Nishida, Yoshihiro Aiba, Michio Yasunami, Masao Nagasaki, Minoru Nakamura, Katsushi Tokunaga
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-04657-x

Genetic targeting and anatomical registration of neuronal populations in the zebrafish brain with a new set of BAC transgenic tools
Cited by: 56
Author(s): Dominique Förster, Irene Arnold-Ammer, Eva Laurell, Alison J. Barker, António M. Fernandes, Karin Finger‐Baier, Alessandro Filosa, Thomas O. Helmbrecht, Yvonne Kölsch, Enrico Kühn, Estuardo Robles, Krasimir Slanchev, Tod R. Thiele, Herwig Baier, Fumi Kubo
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-10339-5

The PDK1 Inhibitor Dichloroacetate Controls Cholesterol Homeostasis Through the ERK5/MEF2 Pathway
Cited by: 23
Author(s): Asaad Khan, Nerea Allende-Vega, Delphine Gitenay, Sabine Gerbal‐Chaloin, Claire Gondeau, Dang Nghiem Vo, Sana Belkahla, Stefania Orecchioni, Giovanna Talarico, Francesco Bertolini, Milica Božić, José M. Valdivielso, Fabienne Bejjani, Isabelle Jariel, Isabel C. López-Mejía, Lluís Fajas, Charles-Henri Lecellier, Javier Hernandez, Martine Daujat, Martín Villalba
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-017-12532-y

SHH signaling directed by two oral epithelium-specific enhancers controls tooth and oral development
Cited by: 22
Author(s): Tomoko Sagai, Takanori Amano, Akiteru Maeno, Hiroshi Kanazawa, Hye-Jin Seo, Sung Won Cho, Toshihiko Shiroishi
Software Mentions: 1
Published: about 7 years ago

10.1007/s13205-012-0063-7

Vertebrate patatin-like phospholipase domain-containing protein 4 (PNPLA4) genes and proteins: a gene with a role in retinol metabolism
Cited by: 7
Author(s): Roger S. Holmes
Software Mentions: 1
Published: over 12 years ago

10.1007/s13205-011-0013-9

Genomics and proteomics of vertebrate cholesterol ester lipase (LIPA) and cholesterol 25-hydroxylase (CH25H)
Cited by: 32
Author(s): Roger S. Holmes, John L. VandeBerg, Laura A. Cox
Software Mentions: 1
Published: over 13 years ago

10.1042/AN20130029

Increased Binding of Stroke-Induced Long Non-Coding RNAs to the Transcriptional Corepressors Sin3A and coREST
Cited by: 67
Author(s): Ashutosh Dharap, Courtney Pokrzywa, Raghu Vemuganti
Software Mentions: 1
Published: over 11 years ago

10.1155/2014/259382

Structural Differences Observed in Arboviruses of the Alphavirus and Flavivirus Genera
Cited by: 18
Author(s): Raquel Hernandez, Dennis T. Brown, Angel Paredes
Software Mentions: 1
Published: almost 11 years ago

10.18632/aging.101671

A CREB1/miR-433 reciprocal feedback loop modulates proliferation and metastasis in colorectal cancer
Cited by: 31
Author(s): Yan Li, Weiqiang You, Nengquan Sheng, Jianfeng Gong, Landian Hu, Gewen Tan, Hongqi Chen, Zhigang Wang
Software Mentions: 1
Published: almost 6 years ago

10.18632/aging.101470

Integrated DNA methylation and gene expression analysis identifies SLAMF7 as a key regulator of atherosclerosis
Cited by: 13
Author(s): Zhangyong Xia, Minghong Gu, Xiaodong Jia, Xiaoting Wang, Chunxia Wu, Jiangwen Guo, Liyong Zhang, Yifeng Du, Jiyue Wang
Software Mentions: 1
Published: over 6 years ago

10.1111/acel.12607

The PPARγ-SETD8 axis constitutes an epigenetic, p53-independent checkpoint on p21-mediated cellular senescence
Cited by: 21
Author(s): Chieh Tien Shih, Ian Yi‐Feng Chang, Yi Tung Chen, Chung Pei, Hui-Wen Chen, Chang Ching Yang, Juu Chin Lu, Yau Sheng Tsai, Hua Chien Chen, Bertrand Chin‐Ming Tan
Software Mentions: 1
Published: over 7 years ago

10.1186/s13015-019-0158-3

TMRS: an algorithm for computing the time to the most recent substitution event from a multiple alignment column
Cited by: 0
Author(s): Hisanori Kiryu, Yuto Ichikawa, Yasuhiro Kojima
Software Mentions: 1
Published: about 5 years ago

10.1186/1748-7188-6-2

WordCluster: detecting clusters of DNA words and genomic elements
Cited by: 19
Author(s): Michael Hackenberg, Pedro Carpena, Pedro Bernaola‐Galván, Guillermo Barturen, Ángel M. Alganza, José Luis Tejera Oliver
Software Mentions: 1
Published: almost 14 years ago

10.1016/j.ajhg.2018.11.004

GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology
Cited by: 36
Author(s): Jonas Bovijn, Leigh Jackson, Jenny C Censin, Chia‐Yen Chen, Triin Laisk, Samantha Laber, Teresa Ferreira, Sara L. Pulit, Craig A. Glastonbury, Jordan W. Smoller, Jamie Harrison, Katherine S. Ruth, Robin N Beaumont, Samuel E. Jones, Jessica Tyrrell, Andrew R. Wood, Michael N. Weedon, Reedik Mägi, Benjamin M. Neale, Cecilia M. Lindgren, Anna Murray, Michael V. Holmes
Software Mentions: 1
Published: almost 6 years ago

10.1152/ajpendo.00580.2012

Decreased expression of the satiety signal receptor CCKAR is responsible for increased growth and body weight during the domestication of chickens
Cited by: 59
Author(s): Ian Dunn, Simone Meddle, Peter W.F. Wilson, Chloe A. Wardle, Andy Law, Valerie Bishop, Camilla Hindar, Gavin Robertson, David W. Burt, Stephanie J. Ellison, David Morrice, Paul Hocking
Software Mentions: 1
Published: over 11 years ago

10.4269/ajtmh.15-0049

Population Genetics, Evolutionary Genomics, and Genome-Wide Studies of Malaria: A View Across the International Centers of Excellence for Malaria Research
Cited by: 13
Author(s): Jane M. Carlton, Sarah K. Volkman, Swapna Uplekar, Daniel Hupalo, João M. P. Alves, Liwang Cui, Martin J. Donnelly, David S. Roos, Omar S. Harb, Mónica Mancero Acosta, Andrew C. Read, Paulo Eduardo Martins Ribolla, O. P. Singh, Neena Valecha, Samuel C. Wassmer, Marcelo U. Ferreira, Ananías A. Escalante
Software Mentions: 1
Published: about 9 years ago

10.1111/andr.12476

The <scp>SET</scp> protein promotes androgen production in testicular Leydig cells
Cited by: 5
Author(s): B. Zhang, Wei Ma, Qun Zhu, Wei Xu, Lingling Gao, Boqun Xu, Shunqing Xu, Chunfang Gao, J. Liu, Yugui Cui
Software Mentions: 1
Published: over 6 years ago

10.1007/s10456-017-9542-0

RCAN1.4 regulates VEGFR-2 internalisation, cell polarity and migration in human microvascular endothelial cells
Cited by: 51
Author(s): Ahmad F. Alghanem, Emma L. Wilkinson, Maxine S. Emmett, Mohammad Aljasir, Katherine Holmes, Beverley A. Rothermel, Victoria A. Simms, Victoria L. Heath, Michael Cross
Software Mentions: 1
Published: over 7 years ago

10.1093/aobpla/plt011

Microscopic elucidation of abundant endophytic bacteria colonizing the cell wall–plasma membrane peri-space in the shoot-tip tissue of banana
Cited by: 56
Author(s): Pious Thomas, K. Madhavi Reddy
Software Mentions: 1
Published: almost 12 years ago

10.1186/ar3515

Interleukin-1, tumor necrosis factor-alpha, and transforming growth factor-beta 1 and integrative meniscal repair: influences on meniscal cell proliferation and migration
Cited by: 52
Author(s): Katherine M. Riera, Nicole E. Rothfusz, Rebecca E. Wilusz, J. Brice Weinberg, Farshid Guilak, Amy L. McNulty
Software Mentions: 1
Published: almost 14 years ago

10.1186/ar1700

Cited by: 3
Author(s): Lars Andersson, Greta Petersen, Per Johnson, Fredrik Ståhl
Software Mentions: 1
Published: almost 20 years ago

10.1186/1471-2105-15-S1-S8

AnnotateGenomicRegions: a web application
Cited by: 8
Author(s): Luca Zammataro, Rita DeMolfetta, Gabriele Bucci, Arnaud Céol, Heiko Mul̈ler
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12859-018-2247-6

CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata
Cited by: 9
Author(s): Syed Ahmad Chan Bukhari, Marcos Martínez-Romero, Martin J. O’ Connor, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Kei‐Hoi Cheung, Steven H. Kleinstein
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2105-7-S5-S4

Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus
Cited by: 35
Author(s): Mohammad Asif Khan, A. T. Heiny, Kenneth X. Lee, Kellathur N. Srinivasan, Tin Wee Tan, J. Thomas August, Vladimir Brusic
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2105-10-59

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation
Cited by: 32
Author(s): Sandra N. Loevenich, Erich Brunner, Nichole L. King, Eric W. Deutsch, Stephen E. Stein, Ruedi Aebersold, Ernst Hafen
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2105-14-167

Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline
Cited by: 2
Author(s): Alireza Hadj Khodabakhshi, Anthony P. Fejes, İnanç Birol, Steven J.M. Jones
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2105-10-S15-S3

Gevab: a prototype genome variation analysis browsing server
Cited by: 2
Author(s): Woo-Yeon Kim, Sang Yoon Kim, TaeHyung Kim, Sung‐Min Ahn, Ha Na Byun, Deokhoon Kim, Dae-Soo Kim, Yong Seok Lee, Ho Ghang, Daeui Park, Byoung-Chul Kim, Chulhong Kim, Sung-Hoon Lee, Seong‐Jin Kim, Jong Bhak
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12859-017-1846-y

RiceMetaSys for salt and drought stress responsive genes in rice: a web interface for crop improvement
Cited by: 26
Author(s): Maninder Sandhu, V. Sureshkumar, Chandra Prakash, Rekha Dixit, Amolkumar U. Solanke, Tilak Raj Sharma, Trilochan Mohapatra, S. V. Amitha Mithra
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2105-11-S1-S14

Prediction of novel miRNAs and associated target genes in Glycine max
Cited by: 106
Author(s): Trupti Joshi, Zhe Yan, Marc Libault, Dong‐Hoon Jeong, Sunhee Park, Pamela J. Green, D. Janine Sherrier, Andrew Farmer, Greg May, Blake C. Meyers, Dong Xu, Gary Stacey
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2105-14-S17-A17

FPD2GB2: Automating a transition from a customized genome browser to GBrowse2
Cited by: 1
Author(s): Roger G. Chui, Jerzy W. Jaromczyk, Neil Moore, Christopher L. Schardl
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2105-13-S3-S6

Detection of gene expression changes at chromosomal rearrangement breakpoints in evolution
Cited by: 8
Author(s): Adriana Muñoz, David Sankoff
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2105-11-29

miRMaid: a unified programming interface for microRNA data resources
Cited by: 17
Author(s): Anders Jacobsen, Anders Krogh, Sakari Kauppinen, Morten Lindow
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2105-14-289

Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data
Cited by: 197
Author(s): Thorfinn Sand Korneliussen, Ida Moltke, Anders Albrechtsen, Rasmus Nielsen
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2105-13-187

ParsEval: parallel comparison and analysis of gene structure annotations
Cited by: 24
Author(s): Daniel Standage, Volker Brendel
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2105-6-S1-S17

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA
Cited by: 153
Author(s): Evelyn Camon, Daniel Barrell, Emily Dimmer, Vivian Lee, Michele Magrane, John Maslen, David Binns, Rolf Apweiler
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2105-9-549

nGASP – the nematode genome annotation assessment project
Cited by: 65
Author(s): Avril Coghlan, Tristan J. Fiedler, Sheldon McKay, Paul Flicek, Todd W. Harris, Darin Blasiar, Lincoln Stein
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2105-11-238

A database and API for variation, dense genotyping and resequencing data
Cited by: 37
Author(s): Daniel Ríos, William McLaren, Yuan Chen, Ewan Birney, Arne Stabenau, Paul Flicek, Fiona Cunningham
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2105-9-S8-S3

Integrating biological data – the Distributed Annotation System
Cited by: 82
Author(s): Andy Jenkinson, Mario Albrecht, Ewan Birney, Hagen Blankenburg, Thomas A. Down, Alex Bateman, Henning Hermjakob, Tim Hubbard, Rafael C. Jiménez, Philip Jones, Andreas Kähäri, Eugene Kulesha, José Ramón Macías, Gabrielle A. Reeves, Andreas Prlić
Software Mentions: 1
Published: over 16 years ago

10.1186/s12859-021-04090-y

Low-level variant calling for non-matched samples using a position-based and nucleotide-specific approach
Cited by: 0
Author(s): Jeffrey N. Dudley, Celine Hong, Marwan A. Hawari, Jasmine Shwetar, Julie C. Sapp, Justin Lack, Henoke Shiferaw, Jennifer J. Johnston, Leslie G. Biesecker
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-16-S13-S1

Proceedings of the 2015 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference
Cited by: 0
Author(s): Jonathan D. Wren, Shraddha Thakkar, Ramin Homayouni, Donald J. Johann, Mikhail G. Dozmorov
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12859-015-0673-2

GESPA: classifying nsSNPs to predict disease association
Cited by: 6
Author(s): Jay K. Khurana, Jay E. Reeder, Antony E. Shrimpton, Juilee Thakar
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-9-145

ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts
Cited by: 8
Author(s): Kwangmin Choi, Sun Kim
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2105-7-25

Analysis and visualization of chromosomal abnormalities in SNP data with SNPscan
Cited by: 38
Author(s): Jason C. Ting, Ying Ye, George H. Thomas, Ingo Ruczinski, Jonathan Pevsner
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2105-11-516

QTLminer: identifying genes regulating quantitative traits
Cited by: 24
Author(s): Rudi Alberts, Klaus Schughart
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2105-8-19

Statistical significance of cis-regulatory modules
Cited by: 70
Author(s): Dustin E. Schones, Andrew D. Smith, Michael Q. Zhang
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2105-8-94

Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements
Cited by: 13
Author(s): Sung Tae Doh, Yunyu Zhang, Matthew H Temple, Li Cai
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2105-9-S12-S19

An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases
Cited by: 13
Author(s): Jin Yang, Shin Hwang, Jeongsu Oh, Jong Bhak, Tae-Kwon Sohn
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12915-015-0147-z

Nuclear myosin 1 contributes to a chromatin landscape compatible with RNA polymerase II transcription activation
Cited by: 46
Author(s): Bader Almuzzaini, Aishe A. Sarshad, Ann Kristin Östlund Farrants, Piergiorgio Percipalle
Software Mentions: 1
Published: over 9 years ago

10.1186/1741-7007-11-90

Transcription of a protein-coding gene on B chromosomes of the Siberian roe deer (Capreolus pygargus)
Cited by: 55
Author(s): Vladimir A. Trifonov, Polina Dementyeva, Denis M. Larkin, Patrícia C. M. O’Brien, Polina L. Perelman, Fengtang Yang, Malcolm A. Ferguson‐Smith, Alexander S. Graphodatsky
Software Mentions: 1
Published: over 11 years ago

10.1186/1741-7007-8-149

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA
Cited by: 246
Author(s): Philipp Kapranov, Georges St. Laurent, Tal Raz, Fatih Ozsolak, C. Patrick Reynolds, Poul H. Sorensen, Gregory H. Reaman, Patrice M. Milos, Robert J. Arceci, John F. Thompson, Timothy J. Triche
Software Mentions: 1
Published: almost 14 years ago

10.1186/1741-7007-11-24

Copy-number variation of cancer-gene orthologs is sufficient to induce cancer-like symptoms in Saccharomyces cerevisiae
Cited by: 17
Author(s): Michaela de Clare, Stephen G. Oliver
Software Mentions: 1
Published: over 11 years ago

10.1186/s12915-016-0320-z

Coordinated inhibition of C/EBP by Tribbles in multiple tissues is essential for Caenorhabditis elegans development
Cited by: 30
Author(s): Kyung Won Kim, Nishant Thakur, Christopher A. Piggott, Shizue Omi, Jolanta Polanowska, Yishi Jin, Nathalie Pujol
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12885-018-5050-x

TRPM7 overexpression enhances the cancer stem cell-like and metastatic phenotypes of lung cancer through modulation of the Hsp90α/uPA/MMP2 signaling pathway
Cited by: 34
Author(s): Kai Li, Shaohua Xu, Zhao Chun-hua, Qingxin Zeng, Zhijun Li, Zhoumiao Chen
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12885-021-08332-3

Prognostic and clinicopathological insights of phosphodiesterase 9A gene as novel biomarker in human colorectal cancer
Cited by: 10
Author(s): Tasmina Ferdous Susmi, Atikur Rahman, Md. Moshiur Rahman Khan, Farzana Yasmin, Md. Shariful Islam, Omaima Nasif, Sulaiman Ali Alharbi, Gaber El‐Saber Batiha, Mohammad Uzzal Hossain
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2407-10-40

Orphan receptor GPR110, an oncogene overexpressed in lung and prostate cancer
Cited by: 63
Author(s): Amy Lum, Bruce B. Wang, Gabriele Beck-Engeser, Lauri Li, Namitha Channa, Matthias Wabl
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2407-9-198

A novel method, digital genome scanning detects KRAS gene amplification in gastric cancers: involvement of overexpressed wild-type KRAS in downstream signaling and cancer cell growth
Cited by: 52
Author(s): Hiroaki Mitsuya, Minoru Toyota, Fugaku Aoki, Hirofumi Akashi, Reo Maruyama, Yasushi Sasaki, Hiromu Suzuki, Masashi Idogawa, Lisa Kashima, Kazuyoshi Yanagihara, Masahiro Fujita, Masao Hosokawa, Masanobu Kusano, Sorin V. Sabau, Haruyuki Tatsumi, Kohzoh Imai, Yasuhisa Shinomura, Takashi Tokino
Software Mentions: 1
Published: over 15 years ago

10.1186/s12906-018-2396-1

Topical anti-inflammatory and anti-oxidative effects of porcine placenta extracts on 2,4-dinitrochlorobenzene-induced contact dermatitis
Cited by: 15
Author(s): Jae-Hyeok Heo, Yoonki Heo, Hee Jung Lee, Min-Jee Kim, Ha Youn Shin
Software Mentions: 1
Published: almost 6 years ago

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