pypi: browser | Projects | Ecosyste.ms: Papers

10.1111/1751-7915.12135

Microbial strain collections and information
Cited by: 3
Author(s): Lawrence P. Wackett
Software Mentions: 1
Published: over 12 years ago

Open access to sequence: Browsing the Pichia pastoris genome
Cited by: 54
Author(s): Diethard Mattanovich, Nico Callewaert, Pierre Rouzé, Yao‐Cheng Lin, Alexandra B. Graf, Andréas Redl, Petra Tiels, Brigitte Gasser, Kristof De Schutter
Software Mentions: 1
Published: over 17 years ago

10.1186/2042-5783-2-9

Bioinformatic identification of Mycobacterium tuberculosis proteins likely to target host cell mitochondria: virulence factors?
Cited by: 21
Author(s): María Maximina Bertha Moreno-Altamirano, Iris Selene Paredes-González, Clara Espitia, Mauricio Santiago-Maldonado, Rogelio Hernández-Pando, Francisco Javier Sánchez‐García
Software Mentions: 1
Published: almost 14 years ago

10.17912/micropub.biology.000339

Software Mentions: 1

10.1186/1759-8753-3-15

Cell type-specific termination of transcription by transposable element sequences
Cited by: 21
Author(s): Andrew B. Conley, I. King Jordan
Software Mentions: 1
Published: over 14 years ago

10.1186/s13100-018-0135-2

Phylogenomic analysis reveals splicing as a mechanism of parallel evolution of non-canonical SVAs in hominine primates
Cited by: 6
Author(s): Annette Damert
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13100-020-00222-y

LINE-1 ORF1p does not determine substrate preference for human/orangutan SVA and gibbon LAVA
Cited by: 1
Author(s): Annette Damert
Software Mentions: 1
Published: about 6 years ago

10.1186/2040-2392-5-5

Identification of rare DNA sequence variants in high-risk autism families and their prevalence in a large case/control population
Cited by: 32
Author(s): Nori Matsunami, Charles H. Hensel, Lisa Baird, Jeff Stevens, Brith Otterud, Tami Leppert, Tena Varvil, Dexter Hadley, Joseph T. Glessner, Renata Pellegrino, Cecilia Kim, Kelly Thomas, Fengxiang Wang, F. George Otieno, Karen S. Ho, G. Bryce Christensen, Dongying Li, Rytis Prekeris, Christophe G Lambert, Hákon Hákonarson, M. Leppert
Software Mentions: 1
Published: over 12 years ago

10.1186/s13229-017-0171-7

Critical region within 22q11.2 linked to higher rate of autism spectrum disorder
Cited by: 31
Author(s): Caitlin C. Clements, Tara L. Wenger, Alisa Zoltowski, Jennifer R. Bertollo, Judith S. Miller, Ashley de Marchena, Lauren Mitteer, John C. Carey, Benjamin E. Yerys, Elaine H. Zackai, Beverly S. Emanuel, Donna M. McDonald‐McGinn
Software Mentions: 1
Published: almost 9 years ago

10.1186/2040-2392-4-8

Whole-genome sequencing in an autism multiplex family
Cited by: 73
Author(s): Lingling Shi, Xu Zhang, Ryan Golhar, F. George Otieno, Mingze He, Cuiping Hou, Cecilia Kim, Brendan J. Keating, Gholson J. Lyon, Kai Wang, Hákon Hákonarson
Software Mentions: 1
Published: over 13 years ago

10.1093/molbev/msv172

hapbin: An Efficient Program for Performing Haplotype-Based Scans for Positive Selection in Large Genomic Datasets: Fig. 1.
Cited by: 55
Author(s): Colin MacLean, Neil Chue Hong, James Prendergast
Software Mentions: 1
Published: about 11 years ago

10.1093/molbev/msv265

Comparative Genomics Identifies Epidermal Proteins Associated with the Evolution of the Turtle Shell
Cited by: 43
Author(s): Karin Brigit Holthaus, Bettina Strasser, Wolfgang Sipos, Heiko A. Schmidt, Veronika Mlitz, Supawadee Sukseree, Anton Weissenbacher, Erwin Tschachler, Lorenzo Alibardi, Leopold Eckhart
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13041-020-00595-4

Identification of a novel Shank2 transcriptional variant in Shank2 knockout mouse model of autism spectrum disorder
Cited by: 8
Author(s): Yong Seok Lee, Nam Kyung Yu, Jeewan Chun, Jung Eun Yang, Chae Seok Lim, Hyopil Kim, Gaeun Park, Jin A Lee, Kyung-Min Lee, Bong Kiun Kaang, Jae Hyung Lee
Software Mentions: 1
Published: over 6 years ago

10.1186/1756-6606-4-14

Identification of a novel intronic enhancer responsible for the transcriptional regulation of musashi1 in neural stem/progenitor cells
Cited by: 23
Author(s): S. Kawase, Toshio Imai, Chikako Miyauchi-Hara, Kunio Yaguchi, Yoshinori Nishimoto, Shin Ichi Fukami, Yuji Matsuzaki, Atsushi Miyawaki, Shigeyoshi Itohara, Hideyuki Okano
Software Mentions: 1
Published: over 15 years ago

10.1186/s12943-020-01277-4

The PVT1 lncRNA is a novel epigenetic enhancer of MYC, and a promising risk-stratification biomarker in colorectal cancer
Cited by: 51
Author(s): Kunitoshi Shigeyasu, Shusuke Toden, Tomohiro Ozawa, Takatoshi Matsuyama, Takeshi Nagasaka, Toshiaki Ishikawa, Debashis Sahoo, Pradipta Ghosh, Hiroyuki Uetake, Toshiyoshi Fujiwara, Ajay Goel
Software Mentions: 1
Published: almost 6 years ago

10.1186/1476-4598-13-120

A novel approach to identify driver genes involved in androgen-independent prostate cancer
Cited by: 44
Author(s): Ellyn N. Schinke, Victor M. Bii, Arun Kumar Nalla, Dustin T. Rae, Laura Tedrick, Gary G. Meadows, Grant D. Trobridge
Software Mentions: 1
Published: over 12 years ago

10.1016/j.molcel.2015.01.011

BRCA1 Recruitment to Transcriptional Pause Sites Is Required for R-Loop-Driven DNA Damage Repair
Cited by: 342
Author(s): Elodie Hatchi, Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula, Stoil D. Dimitrov, Shailja Pathania, Kristine McKinney, Matthew L. Eaton, M Kellis, Sarah J. Hill, Giovanni Parmigiani, Nick J. Proudfoot, David M. Livingston
Software Mentions: 1
Published: over 11 years ago

10.1007/s11010-021-04103-7

Evidence of synergism among three genetic variants in a patient with LMNA-related lipodystrophy and amyotrophic lateral sclerosis leading to a remarkable nuclear phenotype
Cited by: 3
Author(s): Kathryn Volkening, Sali M.K. Farhan, Jennifer L. Kao, Cheryl Leystra-Lantz, Lee Cyn Ang, Adam D. McIntyre, Jian Wang, Robert A. Hegele, Michael J. Strong
Software Mentions: 1
Published: over 5 years ago

10.1186/s40348-020-00102-8

Nup133 and ERα mediate the differential effects of hyperoxia-induced damage in male and female OPCs
Cited by: 7
Author(s): Donna Elizabeth Sunny, Elke Hammer, Sebastian Strempel, Christy Joseph, Himanshu Manchanda, Till Ittermann, Stephanie Hübner, Frank Ulrich Weiß, Uwe Völker, Matthias Heckmann
Software Mentions: 1
Published: about 6 years ago

10.1074/mcp.RA117.000155

Detection of Proteome Diversity Resulted from Alternative Splicing is Limited by Trypsin Cleavage Specificity
Cited by: 68
Author(s): Xiaojing Wang, Simona G. Codreanu, Bo Wen, Kai Li, Matthew Chambers, D.C. Liebler, Bing Zhang
Software Mentions: 1
Published: over 8 years ago

10.1186/s13039-016-0266-4

Genome wide array-CGH and qPCR analysis for the identification of genome defects in Williams’ syndrome patients in Saudi Arabia
Cited by: 5
Author(s): Ibtessam R Hussein, Afaf Magbooli, Etimad Huwait, Adeel G. Chaudhary, Rima S Bader, Mamdooh Gari, Fai T. Ashgan, Maha Mohsin Al-Quaiti, Adel M. Abuzenadah, Mohammed Al‐Qahtani
Software Mentions: 1
Published: about 10 years ago

10.1186/s13039-017-0311-y

Molecular cytogenetic characterisation of a novel de novo ring chromosome 6 involving a terminal 6p deletion and terminal 6q duplication in the different arms of the same chromosome
Cited by: 10
Author(s): Nikolai Paul Pace, Frideriki Maggouta, Melissa Twigden, Isabella Borg
Software Mentions: 1
Published: over 9 years ago

10.1186/s13039-021-00554-1

Terminal 10q26.12 deletion is associated with neonatal asymmetric crying facies syndrome: a case report and literature review
Cited by: 0
Author(s): Qinghong Li, Chunmei Sun, Jinzhen Guo, Zhang Wen, Liping Zhang
Software Mentions: 1
Published: about 5 years ago

10.1186/s13039-020-00510-5

Non-classical 1p36 deletion in a patient with Duane retraction syndrome: case report and literature review
Cited by: 2
Author(s): Emiy Yokoyama, Camilo E. Villarroel, Sinhué Diaz, Victoria del Castillo, Patricia Pérez-Vera, Consuelo Salas-Labadía, S Gómez, Reneé Barreda, Bertha Molina, Sara Frías
Software Mentions: 1
Published: about 6 years ago

10.1186/s13039-015-0153-4

High rates of submicroscopic aberrations in karyotypically normal acute lymphoblastic leukemia
Cited by: 16
Author(s): Moneeb A.K. Othman, Joana B. Melo, Isabel M. Carreira, Martina Rinčić, Anita Glaser, Beata Grygalewicz, Bernd Gruhn, Kathleen Wilhelm, Katharina Rittscher, Britta Meyer, Maria Luíza Macedo Silva, Terezinha de Jesus Marques Salles, Thomas Liehr
Software Mentions: 1
Published: about 11 years ago

10.1186/s13039-017-0308-6

Incidence of the 22q11.2 deletion in a large cohort of miscarriage samples
Cited by: 25
Author(s): Melissa Maisenbacher, Katrina Merrion, B. Pettersen, Michael Young, Kiyoung Paik, Sushma Iyengar, Stephanie Kareht, Styrmir Sigurjonsson, Zachary Demko, Kimberly Martin
Software Mentions: 1
Published: over 9 years ago

10.1186/1755-8166-1-11

Chromosomal assignment of canine THADA gene to CFA 10q25
Cited by: 3
Author(s): Jan T. Soller, Claudia Beuing, Hugo Murua Escobar, Susanne Winkler, Nicola Reimann-Berg, Norbert Drieschner, G. Dolf, C. Schelling, Ingo Nolte, Jörn Bullerdiek
Software Mentions: 1
Published: over 18 years ago

10.1186/s13039-014-0075-6

Investigation of selected genomic deletions and duplications in a cohort of 338 patients presenting with syndromic obesity by multiplex ligation-dependent probe amplification using synthetic probes
Cited by: 10
Author(s): Carla Sustek D’Angelo, Monica Castro Varela, Cláudia Irene Emílio de Castro, Chong Kim, Débora Romeo Bertola, Charles Marques Lourenço, Ana Beatriz Alvarez Perez, Célia Priszkulnik Koiffmann
Software Mentions: 1
Published: almost 12 years ago

10.1186/1755-8166-4-3

Evidence-based genomic diagnosis characterized chromosomal and cryptic imbalances in 30 elderly patients with myelodysplastic syndrome and acute myeloid leukemia
Cited by: 35
Author(s): Renu Bajaj, Feifei Xu, Bixia Xiang, Katherine Wilcox, Autumn DiAdamo, Rachana A. Kumar, Alexandra Pietraszkiewicz, Stephanie Halene, Peining Li
Software Mentions: 1
Published: over 15 years ago

10.3390/molecules23092191

ELF3, ELF5, EHF and SPDEF Transcription Factors in Tissue Homeostasis and Cancer
Cited by: 68
Author(s): Ian Y. Luk, Camilla M. Reehorst, John M. Mariadason
Software Mentions: 1
Published: about 8 years ago

10.3390/molecules191118721

Methanolic Extracts of Solieria robusta Inhibits Proliferation of Oral Cancer Ca9-22 Cells via Apoptosis and Oxidative Stress
Cited by: 36
Author(s): Y. Albert Yen, Ammad Ahmad Farooqı, Kun-Tzu Li, Ghazala Butt, Jen‐Yang Tang, Chang‐Yi Wu, Yuan-Bin Cheng, Ming‐Feng Hou, Hsueh‐Wei Chang
Software Mentions: 1
Published: almost 12 years ago

10.1002/mgg3.1086

Haploinsufficiency of the FOXA2 associated with a complex clinical phenotype
Cited by: 5
Author(s): Idris Mohammed, Sara Al‐Khawaga, David Bohanna, Abdusamea Shabani, Faiyaz Ahmad Khan, Donald R. Love, Zafar Nawaz, Khalid Hussain
Software Mentions: 1
Published: over 6 years ago

10.1002/mgg3.107

Diagnosis of an imprinted‐gene syndrome by a novel bioinformatics analysis of whole‐genome sequences from a family trio
Cited by: 13
Author(s): Dale L. Bodian, Benjamin D. Solomon, Alina Khromykh, Dzung C. Thach, Ramaswamy K. Iyer, Kathleen Link, Robin Baker, Rajiv Baveja, Joseph G. Vockley, John E. Niederhuber
Software Mentions: 1
Published: about 12 years ago

10.1002/mgg3.1300

Reclassification of genetic variants in children with long QT syndrome
Cited by: 13
Author(s): Dominik S. Westphal, Tobias Burkard, Alexander Moscu‐Gregor, Roman Gebauer, Gabriele Hessling, Cordula M. Wolf
Software Mentions: 1
Published: over 6 years ago

10.1002/mgg3.295

Pitfalls in genetic testing: a case of a SNP in primer-annealing region leading to allele dropout in BRCA1
Cited by: 10
Author(s): Felipe Cavalcanti Carneiro da Silva, Giovana Tardin Torrezan, Rafael Canfield Brianese, Raquel Stabellini
Software Mentions: 1
Published: over 9 years ago

10.1002/mgg3.61

<scp>CTSC</scp>and Papillon–Lefèvre syndrome: detection of recurrent mutations in<scp>H</scp>ungarian patients, a review of published variants and database update
Cited by: 47
Author(s): Nikoletta Nagy, Péter Vályi, Zsanett Csoma, Adrienn Sulák, Kornélia Tripolszki, Katalin Farkas, Ekaterine Paschali, Ferenc Papp, László Tóth, Beáta Fábos, Lajos Kemény, Katalin Nagy, Márta Széll
Software Mentions: 1
Published: over 12 years ago

10.1007/s12035-018-1444-7

FOXG1 Regulates PRKAR2B Transcriptionally and Posttranscriptionally via miR200 in the Adult Hippocampus
Cited by: 18
Author(s): Stefan Weise, G Arumugam, Alejandro Villarreal, Pavankumar Videm, Stefanie Heidrich, Nils Nebel, Verónica I. Dumit, Farahnaz Sananbenesi, Viktoria Reimann, Madeline Craske, Oliver Schilling, Wolfgang R. Hess, André Fischer, Rolf Backofen, Tanja Vogel
Software Mentions: 1
Published: over 7 years ago

10.1038/s41380-018-0210-6

Identification of ADHD risk genes in extended pedigrees by combining linkage analysis and whole-exome sequencing
Cited by: 15
Author(s): Jordi Corominas, Marieke Klein, Tetyana Zayats, Olga Rivero, Georg C. Ziegler, Marc Pauper, Kornelia Neveling, Geert Poelmans, Charline Jansch, Evgeniy Svirin, Julia Geißler, Heike Weber, Andreas Reif, Alejandro Arias Vásquez, Tessel E. Galesloot, Lambertus A. Kiemeney, Jan K. Buitelaar, Josep Antoni Ramos-Quiroga, Bru Cormand, Marta Ribasés, Kristian Hveem, Maiken Elvestad Gabrielsen, Per Hoffmann, Sven Cichon, Jan Haavik, Stefan Johansson, Christian Jacob, Marcel Romanos, Barbara Franke, Klaus‐Peter Lesch
Software Mentions: 1
Published: about 8 years ago

10.1038/s41380-019-0561-7

The Netrin-1/DCC guidance system: dopamine pathway maturation and psychiatric disorders emerging in adolescence
Cited by: 53
Author(s): Daniel E. Vosberg, Marco Leyton, Cecilia Flores
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41380-019-0440-2

Circadian glucocorticoid oscillations preserve a population of adult hippocampal neural stem cells in the aging brain
Cited by: 48
Author(s): Marijn Schouten, Pascal Bielefeld, Laura García-Corzo, Emma M.J. Passchier, Simona Gradari, Tassilo Jungenitz, Meritxell Pons-Espinal, Elias Gebara, Soraya Martín‐Suárez, Paul J. Lucassen, Helga E. de Vries, José Luís Trejo, Stephan W. Schwarzacher, Davide De Pietri Tonelli, Nicolas Toni, Helena Mira, Juan M. Encinas, Carlos P. Fitzsimons
Software Mentions: 1
Published: about 7 years ago

10.1038/mp.2013.68

708 Common and 2010 rare DISC1 locus variants identified in 1542 subjects: analysis for association with psychiatric disorder and cognitive traits
Cited by: 52
Author(s): Pippa A. Thomson, Jennifer Parla, Allan F. McRae, Melissa Kramer, Kamna Ramakrishnan, Jingjing Yao, Dinesh C. Soares, Shane McCarthy, Stewart W. Morris, Lorna Cardone, Stephen P. Cass, Elena Ghiban, William Hennah, Kathryn Evans, Daniella Rebolini, J. Kirsty Millar, Sarah E. Harris, John M. Starr, Donald J. MacIntyre, Andrew M. McIntosh, James D. Watson, Ian J. Deary, Peter M. Visscher, Douglas Blackwood, W. Richard McCombie, David J. Porteous
Software Mentions: 1
Published: over 13 years ago

10.1038/mtm.2014.55

Pigtailed macaques as a model to study long-term safety of lentivirus vector-mediated gene therapy for hemoglobinopathies
Cited by: 11
Author(s): Hans–Peter Kiem, Paritha Arumugam, Christopher R. Burtner, Catherine Fox, Brian C. Beard, Phillip Dexheimer, Jennifer E. Adair, Punam Malik
Software Mentions: 1
Published: over 12 years ago

10.1016/j.omto.2021.05.013

METTL3 increases cisplatin chemosensitivity of cervical cancer cells via downregulation of the activity of RAGE
Cited by: 16
Author(s): Ruyi Li, Yizuo Song, Xin Chen, Maoping Chu, Zhi-wei Wang, Xueqiong Zhu
Software Mentions: 1
Published: about 5 years ago

10.1186/s13567-016-0363-8

Chicken interferome: avian interferon-stimulated genes identified by microarray and RNA-seq of primary chick embryo fibroblasts treated with a chicken type I interferon (IFN-α)
Cited by: 38
Author(s): Efstathios S. Giotis, Rebecca Robey, Natalie G. Skinner, Christopher Tomlinson, Stephen Goodbourn, Michael A. Skinner
Software Mentions: 1
Published: about 10 years ago

10.1186/1743-422X-7-262

Genome-wide analysis of host-chromosome binding sites for Epstein-Barr Virus Nuclear Antigen 1 (EBNA1)
Cited by: 74
Author(s): Fang Lü, Priyankara Wikramasinghe, Julie Norseen, Kevin Tsai, Pu Wang, Louise C. Showe, Ramana V. Davuluri, Paul M. Lieberman
Software Mentions: 1
Published: almost 16 years ago

10.1186/1743-422X-10-73

Cellular phosphoinositides and the maturation of bluetongue virus, a non-enveloped capsid virus
Cited by: 10
Author(s): Bishnupriya Bhattacharya, Polly Roy
Software Mentions: 1
Published: over 13 years ago

10.1186/s12985-018-0922-x

MicroRNA transcriptome analysis of porcine vital organ responses to immunosuppressive porcine cytomegalovirus infection
Cited by: 7
Author(s): Xiao Liu, Haoche Wei, Shan Liao, Jian‐Heng Ye, Ling Zhu, Zhinan Xu
Software Mentions: 1
Published: over 8 years ago

10.1016/j.virol.2015.10.026

Rabbit CD200R binds host CD200 but not CD200-like proteins from poxviruses
Cited by: 10
Author(s): Munir Akkaya, L.S. Kwong, Erdem Akkaya, Deborah Hatherley, A. Neil Barclay
Software Mentions: 1
Published: over 10 years ago

10.3390/v5030998

Discovering Host Genes Involved in the Infection by the Tomato Yellow Leaf Curl Virus Complex and in the Establishment of Resistance to the Virus Using Tobacco Rattle Virus-based Post Transcriptional Gene Silencing
Cited by: 37
Author(s): Henryk Czosnek, Assaf Eybishtz, Dagan Sade, Rena Gorovits, Iris Sobol, Eduardo R. Bejarano, Tábata Rosas-Díaz, Rosa Lozano‐Durán
Software Mentions: 1
Published: over 13 years ago

10.3390/v9040080

Protein-Coding Genes’ Retrocopies and Their Functions
Cited by: 56
Author(s): Magdalena Regina Kubiak, Izabela Makałowska
Software Mentions: 1
Published: over 9 years ago

10.3390/v9080210

Viral Ubiquitin Ligase Stimulates Selective Host MicroRNA Expression by Targeting ZEB Transcriptional Repressors
Cited by: 13
Author(s): Gabriel Lutz, Igor Jurak, Eui‐Tae Kim, Ju Youn Kim, Michael Hackenberg, Andrew M. Leader, Michelle L. Stoller, Donna M. Fekete, Matthew D. Weitzman, Donald M. Coen, Angus C. Wilson
Software Mentions: 1
Published: about 9 years ago

10.1186/s42492-019-0040-7

Painting image browser applying an associate-rule-aware multidimensional data visualization technique
Cited by: 3
Author(s): Ayaka Kaneko, Akiko Komatsu, Takayuki Itoh, Florence Ying Wang
Software Mentions: 1
Published: over 6 years ago

10.12688/wellcomeopenres.15126.2

Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes Project
Cited by: 62
Author(s): Ernesto Lowy-Gallego, Susan Fairley, Xiangqun Zheng-Bradley, Magali Ruffier, Laura Clarke, Paul Flicek
Software Mentions: 1
Published: over 6 years ago

10.3897/zookeys.150.2248

Data standards, sense and stability: Scratchpads, the ICZN and ZooBank
Cited by: 0
Author(s): Edward Baker, Ellinor Michel
Software Mentions: 1
Published: almost 15 years ago

10.1186/s40851-017-0071-x

An efficient system for homology-dependent targeted gene integration in medaka (Oryzias latipes)
Cited by: 29
Author(s): Yu Murakami, Satoshi Ansai, Akari Yonemura, Masato Kinoshita
Software Mentions: 1
Published: about 9 years ago

10.3390/pathogens10050552

Occurrence of Legionella spp. in Man-Made Water Sources: Isolates Distribution and Phylogenetic Characterization in the Emilia-Romagna Region
Cited by: 9
Author(s): Marta Mazzotta, Silvano Salaris, Maria Rosaria Pascale, Luna Girolamini, Sandra Cristino
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.7558

The sugarcane mitochondrial genome: assembly, phylogenetics and transcriptomics
Cited by: 13
Author(s): Dyfed Lloyd Evans, Thandekile Thandiwe Hlongwane, Suvarna Joshi, Diego Mauricio Riaño-Pachón
Software Mentions: 1
Published: almost 7 years ago

10.7717/peerj.639

Associating disease-related genetic variants in intergenic regions to the genes they impact
Cited by: 22
Author(s): Geoff Macintyre, Antonio Jimeno-Yepes, Cheng Soon Ong, Karin Verspoor
Software Mentions: 1
Published: almost 12 years ago

10.7717/peerj.10312

Evolutionary analysis of chloroplast tRNA of Gymnosperm revealed the novel structural variation and evolutionary aspect
Cited by: 4
Author(s): Tingting Zhang, Yi-Kun Hou, Ting Yang, Shu-Ya Zhang, Ming Yue, Jianni Liu, Zhong-Hu Li
Software Mentions: 1
Published: almost 6 years ago

10.1007/s11095-017-2130-6

Network Reconstruction Reveals that Valproic Acid Activates Neurogenic Transcriptional Programs in Adult Brain Following Traumatic Injury
Cited by: 24
Author(s): Gerald A. Higgins, Patrick E. Georgoff, Vahagn C. Nikolian, Ari Allyn-Feuer, Brian Pauls, Richard Higgins, Hasan E. Alam
Software Mentions: 1
Published: over 9 years ago

10.1098/rstb.2009.0219

Genome-wide scans for footprints of natural selection
Cited by: 294
Author(s): Tarás K. Oleksyk, Michael W. Smith, Stephen J. O’Brien
Software Mentions: 1
Published: over 16 years ago

10.1098/rstb.2020.0157

MolluscDB: a genome and transcriptome database for molluscs
Cited by: 13
Author(s): Carlos Caurcel, Dominik R. Laetsch, Richard Challis, Sujai Kumar, Karim Gharbi, Mark Blaxter
Software Mentions: 1
Published: over 5 years ago

10.1111/pbi.13014

Molecular tools enabling pennycress (Thlaspi arvense) as a model plant and oilseed cash cover crop
Cited by: 70
Author(s): Michaela McGinn, Winthrop B. Phippen, Ratan Chopra, Sunil Bansal, Brice A. Jarvis, Mary E. Phippen, Kevin M. Dorn, Maliheh Esfahanian, Tara J. Nazarenus, Edgar B. Cahoon, Timothy P. Durrett, M. David Marks, John C. Sedbrook
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00299-014-1666-8

OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in rice
Cited by: 49
Author(s): Lina Wu, Yusheng Guan, Zigang Wu, Kun Yang, Jun Lv, Richard Converse, Huang Yuanxin, Jin-Xiong MaoJ. Mao, Yong Zhao, Zhongwei Wang, Min HengQi, Dongyang Kan, Yi Zhang
Software Mentions: 1
Published: about 12 years ago

10.1002/pld3.8

CoGe LoadExp+: A web‐based suite that integrates next‐generation sequencing data analysis workflows and visualization
Cited by: 20
Author(s): Jeffrey W. Grover, Matthew Bomhoff, Sean Davey, Brian D. Gregory, Rebecca A. Mosher, Eric Lyons
Software Mentions: 1
Published: about 9 years ago

10.3390/plants8100406

The Plant NF-Y DNA Matrix In Vitro and In Vivo
Cited by: 6
Author(s): Nerina Gnesutta, Matteo Chiara, Andrea Bernardini, Matteo Balestra, David S. Horner, Roberto Mantovani
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pbio.3000684

Precise genomic mapping of 5-hydroxymethylcytosine via covalent tether-directed sequencing
Cited by: 12
Author(s): Povilas Gibas, Milda Narmontė, Zdislav Staševskij, Juozas Gordevičius, Saulius Klimašauskas, Edita Kriukienė
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.3001045

Signatures of host–pathogen evolutionary conflict reveal MISTR—A conserved MItochondrial STress Response network
Cited by: 17
Author(s): Mahsa Sorouri, Tyron Chang, Palmy R. Jesudhasan, Chelsea Pinkham, Nels C. Elde, Dustin C. Hancks
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.2003067

Spliced integrated retrotransposed element (SpIRE) formation in the human genome
Cited by: 10
Author(s): Peter A. Larson, John B. Moldovan, Naveen Jasti, Jeffrey M. Kidd, Christine R. Beck, John V. Moran
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pbio.1001890

A Novel Nodal Enhancer Dependent on Pluripotency Factors and Smad2/3 Signaling Conditions a Regulatory Switch During Epiblast Maturation
Cited by: 42
Author(s): Costis Papanayotou, Ataaillah Benhaddou, Anne Camus, Aitana Perea-Gómez, Alice Jouneau, Valérie Mezger, Francina Langa, Sascha Ott, Délara Sabéran‐Djoneidi, Jérôme Collignon
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pbio.2005595

Heterochromatin delays CRISPR-Cas9 mutagenesis but does not influence the outcome of mutagenic DNA repair
Cited by: 71
Author(s): Eirini M. Kallimasioti-Pazi, Keerthi Thelakkad Chathoth, Gillian C.A. Taylor, Alison Meynert, Tracy Ballinger, Martijn J. E. Kelder, Sébastien Lalevée, Ildem Sanli, Robert Feil, Andrew J. Wood
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1000988

Systematic Inference of Copy-Number Genotypes from Personal Genome Sequencing Data Reveals Extensive Olfactory Receptor Gene Content Diversity
Cited by: 58
Author(s): Sebastian M. Waszak, Yehudit Hasin, Thomas Zichner, Tsviya Olender, Ifat Keydar, Miriam Khen, Adrian M. Stütz, Andreas Schlattl, Doron Lancet, Jan O. Korbel
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pcbi.1003951

The HIV Mutation Browser: A Resource for Human Immunodeficiency Virus Mutagenesis and Polymorphism Data
Cited by: 24
Author(s): Norman E. Davey, Venkata Satagopam, Salvador Santiago-Mozos, Carlos Villacorta-Martín, Tanmay A. M. Bharat, Reinhard Schneider, John Briggs
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pcbi.1001020

Assessing Computational Methods of Cis-Regulatory Module Prediction
Cited by: 69
Author(s): Jing Su, Sarah A. Teichmann, Thomas A. Down
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pcbi.0030137

Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation
Cited by: 109
Author(s): Joti Giordano, Yongchao Ge, Yevgeniy Gelfand, György Abrusán, Gary Benson, Peter E. Warburton
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.pone.0098837

Patterns of Variation at Ustilago maydis Virulence Clusters 2A and 19A Largely Reflect the Demographic History of Its Populations
Cited by: 7
Author(s): Ronny Kellner, Christian Hanschke, Dominik Begerow
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0220512

Whole genome sequencing and rare variant analysis in essential tremor families
Cited by: 28
Author(s): Zagaa Odgerel, Shilpa Sonti, Nora Hernández, Jemin Park, Ruth Ottman, Elan D. Louis, Lorraine N. Clark
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0136929

Genome-Wide Identification and Expression of Xenopus F-Box Family of Proteins
Cited by: 3
Author(s): Banu Saritas-Yildirim, Hannah A. Pliner, Angelica Ochoa, Elena M. Silva
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0120256

Retroviruses Hijack Chromatin Loops to Drive Oncogene Expression and Highlight the Chromatin Architecture around Proto-Oncogenic Loci
Cited by: 4
Author(s): Jillian M. Pattison, Jason Wright, Michael Cole
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0003726

MicroRNA Expression Patterns and Function in Endodermal Differentiation of Human Embryonic Stem Cells
Cited by: 107
Author(s): Galit Tzur, Asaf Levy, Eti Meiri, Omer Barad, Yael Spector, Zvi Bentwich, Lina Mizrahi, Mark Katzenellenbogen, Etti Ben-Shushan, Benjamin Reubinoff, Eithan Galun
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pone.0126403

The Mechanism of Environmental Endocrine Disruptors (DEHP) Induces Epigenetic Transgenerational Inheritance of Cryptorchidism
Cited by: 44
Author(s): Jinjun Chen, Shengde Wu, Sheng Wen, Lianju Shen, Jinpu Peng, Chao Yan, Xining Cao, Yue Zhou, Long Chen, Tao Lin, Dalin He, Yi Hua, Guanghui Wei
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0092815

Association of DSC3 mRNA Down-Regulation in Prostate Cancer with Promoter Hypermethylation and Poor Prognosis
Cited by: 18
Author(s): Jun Pan, Yu Chen, Chengqiang Mo, Daohu Wang, Junxing Chen, Xiaopeng Mao, Shengjie Guo, Sian Liu, Shaopeng Qiu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0171300

Identification of the early and late responder genes during the generation of induced pluripotent stem cells from mouse fibroblasts
Cited by: 3
Author(s): Jihwan Park, Yoo Wook Kwon, Seokjin Ham, Chang Pyo Hong, Seong-Hye Seo, Moon Kyung Choe, So I. Shin, Choon Soo Lee, Hyo Soo Kim, Tae-Young Roh
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0048732

Genome-Wide Identification of Copy Number Variations in Chinese Holstein
Cited by: 46
Author(s): Li Jiang, Jicai Jiang, Jiying Wang, Xiangdong Ding, J. Liu, Qin Zhang
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0004047

Chromosomal Inversions between Human and Chimpanzee Lineages Caused by Retrotransposons
Cited by: 83
Author(s): Jungnam Lee, Kyudong Han, Thomas J. Meyer, Heui-Soo Kim, Mark A. Batzer
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0111721

Tempo and Mode of Gene Duplication in Mammalian Ribosomal Protein Evolution
Cited by: 13
Author(s): Asav P. Dharia, Ajay Obla, Matthew D. Gajdosik, Amanda Simon, Craig E. Nelson
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0008960

SOX2 Is an Oncogene Activated by Recurrent 3q26.3 Amplifications in Human Lung Squamous Cell Carcinomas
Cited by: 272
Author(s): Thomas Hussenet, Soraya Dali, Julien Exinger, Ben Monga, Bernard Jost, Doulaye Dembelé, Nadine Martinet, Christelle Thibault, Joerg Huelsken, Élisabeth Brambilla, Stanislas du Manoir
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0040637

An Effort to Use Human-Based Exome Capture Methods to Analyze Chimpanzee and Macaque Exomes
Cited by: 23
Author(s): Xin Jin, Mingze He, Betsy Ferguson, Yuhuan Meng, Limei Ouyang, Jingjing Ren, Thomas Mailund, Fei Sun, Liangdan Sun, Juan Shen, Min Zhuo, Li Song, Jufang Wang, Fei Ling, Yuqi Zhu, Christina Hvilsom, Hans R. Siegismund, Xiaoming Liu, Zhuolin Gong, Fang Ji, Xinzhong Wang, Boqing Liu, Yu Zhang, Jingli Hou, Jing Wang, Hua Zhao, Yanyi Wang, Xiaodong Fang, Guojie Zhang, Jian Wang, Xuejun Zhang, Mikkel H. Schierup, Hongli Du, Jun Wang, Xiaoning Wang
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0092707

Epigenetic Silencing of TFPI-2 in Canine Diffuse Large B-Cell Lymphoma
Cited by: 32
Author(s): Serena Ferraresso, Silvia Bresolin, Arianna Aricò, S. Comazzi, Maria Elena Gelain, Fulvio Riondato, Luca Bargelloni, Laura Marconato, Geertruy te Kronnie, Luca Aresu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0118737

SNAP23 Regulates Endothelial Exocytosis of von Willebrand Factor
Cited by: 33
Author(s): Qinglin Zhu, Munekazu Yamakuchi, Charles J. Lowenstein
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0006458

Punicic Acid a Conjugated Linolenic Acid Inhibits TNFα-Induced Neutrophil Hyperactivation and Protects from Experimental Colon Inflammation in Rats
Cited by: 105
Author(s): Tarek Boussetta, Houssam Raad, Philippe Lettéron, Marie‐Anne Gougerot‐Pocidalo, Jean‐Claude Marie, Fathi Driss, Jamel El-Benna
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pone.0122797

Identification of Novel Loci Associated with Gastrointestinal Parasite Resistance in a Red Maasai x Dorper Backcross Population
Cited by: 56
Author(s): Magda Vieira Benavides, Tad S. Sonstegard, Stephen J. Kemp, J. M. Mugambi, John P. Gibson, R.L. Baker, Olivier Hanotte, Karen Marshall, C. P. van Tassell
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0028787

Cooperative Genome-Wide Analysis Shows Increased Homozygosity in Early Onset Parkinson's Disease
Cited by: 22
Author(s): Javier Simón‐Sánchez, Laura L. Kilarski, Michael A. Nalls, María Martínez, Claudia Schulte, Peter Alan Holmans, Thomas Gasser, John Hardy, Andrew B. Singleton, Nicholas W. Wood, Alexis Brice, Peter Heutink, Nigel Williams, Huw R. Morris
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0030677

ISL1 Directly Regulates FGF10 Transcription during Human Cardiac Outflow Formation
Cited by: 43
Author(s): Christelle Golzio, Emmanuelle Havis, Philippe Daubas, Grégory Nuel, Candice Babarit, Arnold Münnich, Michel Vekemans, Stéphane Zaffran, Stanislas Lyonnet, Heather C. Etchevers
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0008693

Genome-Wide Analyses of Gene Expression during Mouse Endochondral Ossification
Cited by: 47
Author(s): Claudine G. James, Lee‐Anne Stanton, Hanga Agoston, Veronica Ulici, T. Michael Underhill, Frank Beier
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0205109

Functional analysis of a triplet deletion in the gene encoding the sodium glucose transporter 3, a potential risk factor for ADHD
Cited by: 5
Author(s): Nadine Schäfer, M Friedrich, Morten Jørgensen, Sina Kollert, Hermann Koepsell, Erhard Wischmeyer, Klaus‐Peter Lesch, Dietmar Geiger, Frank Döring
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0016685

Detection and Removal of Biases in the Analysis of Next-Generation Sequencing Reads
Cited by: 88
Author(s): Schraga Schwartz, Oren Ram, Gil Ast
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0042371

Mating of the Stichotrichous Ciliate Oxytricha trifallax Induces Production of a Class of 27 nt Small RNAs Derived from the Parental Macronucleus
Cited by: 40
Author(s): Alan M. Zahler, Zachary T. Neeb, Athena W. Lin, Sol Katzman
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0201041

Diagnostic value of partial exome sequencing in developmental disorders
Cited by: 33
Author(s): Laura Gieldon, Luisa Mackenroth, Anne‐Karin Kahlert, Johannes R. Lemke, Joseph Porrmann, Jens Schallner, Maja von der Hagen, Susanne Markus, Sabine Weidensee, Barbara Novotna, Charlotte Soerensen, Barbara Klink, Johannes Maximilian Wagner, Andreas Tzschach, Arne Jahn, Franziska Kuhlee, Karl Hackmann, Evelin Schröck, Nataliya Di Donato, Andreas Rump
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0059577

The Turkey Ig-Like Receptor Family: Identification, Expression and Function
Cited by: 10
Author(s): Katharina Windau, Birgit C. Viertlboeck, Thomas Göbel
Software Mentions: 1
Published: over 13 years ago

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