Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: browser
https://packages.ecosyste.ms/registries/pypi.org/packages/browser
A package to prevent Dependency Confusion attacks against Yandex.
2 versions
Latest release: over 1 year ago
2 dependent packages
Papers Mentioning browser 2,125
10.1155/2015/305716
Efficient Mitochondrial Genome Editing by CRISPR/Cas9Cited by: 141
Author(s): Areum Jo, Sangwoo Ham, Gum Hwa Lee, Yun‐Il Lee, SangSeong Kim, Yong Kyu Lee, Joo‐Ho Shin
Software Mentions: 1
Published: almost 10 years ago
10.1155/2013/703849
A Systems’ Biology Approach to Study MicroRNA-Mediated Gene Regulatory NetworksCited by: 27
Author(s): Xin Lai, Animesh Bhattacharya, Ulf Schmitz, Manfred Kunz, Julio Vera, Olaf Wolkenhauer
Software Mentions: 1
Published: almost 12 years ago
10.3390/biom11081125
High Throughput miRNA Screening Identifies miR-574-3p Hyperproductive Effect in CHO CellsCited by: 2
Author(s): Živa Švab, Luca Braga, Corrado Guarnaccia, Ivan Labik, Jeremias S. Herzog, Marco Baralle, Mauro Giacca, Nataša Skoko
Software Mentions: 1
Published: over 3 years ago
10.3390/biom10081115
Ancient Evolutionary Origin of Intrinsically Disordered Cancer Risk RegionsCited by: 11
Author(s): Mátyás Pajkos, András Zeke, Zsuzsanna Dosztányi
Software Mentions: 1
Published: over 4 years ago
10.3390/biom10121700
Molecular Dynamics Simulations Predict that rSNP Located in the HNF-1α Gene Promotor Region Linked with MODY3 and Hepatocellular Carcinoma Promotes Stronger Binding of the HNF-4α Transcription FactorCited by: 4
Author(s): Eva Španinger, Uroš Potočnik, Urban Bren
Software Mentions: 1
Published: almost 4 years ago
10.1042/BSR20170199
Zebrafish models for functional and toxicological screening of nanoscale drug delivery systems: promoting preclinical applicationsCited by: 39
Author(s): Keon Yong Lee, Gun Hyuk Jang, Cho Hyun Byun, Minhong Jeun, Peter C. Searson, Kwan H. Lee
Software Mentions: 1
Published: over 7 years ago
10.1042/BSR20192114
P63 modulates the expression of the<i>WDFY2</i>gene which is implicated in cancer regulation and limb developmentCited by: 4
Author(s): Paola Monti, Yari Ciribilli, Giorgia Foggetti, Alessandra Bisio, Serena Cappato, Alberto Inga, Maria Teresa Divizia, Margherita Lerone, Renata Bocciardi, Gilberto Fronza
Software Mentions: 1
Published: almost 5 years ago
10.1042/BSR20203672
Modelling the functional genomics of Parkinson’s disease in <i>Caenorhabditis elegans</i>: <i>LRRK2</i> and beyondCited by: 7
Author(s): Rachael J Chandler, Susanna Cogo, Patrick A. Lewis, Éva Kevei
Software Mentions: 1
Published: about 3 years ago
10.1038/s41416-018-0301-9
Low-dose anti-inflammatory combinatorial therapy reduced cancer stem cell formation in patient-derived preclinical models for tumour relapse preventionCited by: 27
Author(s): Bee Luan Khoo, Gianluca Grenci, Joey Sze Yun Lim, Yi Wan Lim, July Fong, Wei Hseun Yeap, Su Bin Lim, Song Lin Chua, Siew Cheng Wong, Yoon Sim Yap, Soo‐Chin Lee, Chwee Teck Lim, Jongyoon Han
Software Mentions: 1
Published: almost 6 years ago
10.1093/brain/awz257
Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and geneticsCited by: 108
Author(s): Akira Wiberg, Michael Ng, Yasser Al Omran, Fidel Alfaro-Almagro, Paul McCarthy, Jonathan Marchini, David L.H. Bennett, Stephen M. Smith, Gwenaëlle Douaud, Dominic Furniss
Software Mentions: 1
Published: about 5 years ago
10.1186/bcr2358
An intraductal human-in-mouse transplantation model mimics the subtypes of ductal carcinoma in situCited by: 184
Author(s): Fariba Behbod, Frances Kittrell, Heather L. LaMarca, David G. Edwards, Sofia Kerbawy, Jessica Heestand, Evelin Young, Purna Mukhopadhyay, Hung‐Wen Yeh, D. Craig Allred, Min Hu, Kornélia Polyák, Jeffrey M. Rosen, Daniel Medina
Software Mentions: 1
Published: about 15 years ago
10.1186/bcr2121
Epigenetic mapping and functional analysis in a breast cancer metastasis model using whole-genome promoter tiling microarraysCited by: 62
Author(s): David I. Rodenhiser, Joseph Andrews, Wendy Kennette, Bekim Sadiković, Ariel Mendlowitz, Alan B. Tuck, Ann F. Chambers
Software Mentions: 1
Published: over 16 years ago
10.1093/bib/bbv101
Progress and challenges in bioinformatics approaches for enhancer identificationCited by: 76
Author(s): Dimitrios Kleftogiannis, Panos Kalnis, Vladimir B. Bajic
Software Mentions: 1
Published: almost 9 years ago
10.1007/s00223-018-0406-4
Pharmacological Inhibition of the Skeletal IKKβ Reduces Breast Cancer-Induced OsteolysisCited by: 8
Author(s): Silvia Marino, Ryan T. Bishop, Patrick Mollat, Aymen I. Idris
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12935-019-0833-y
Identification of ESM1 overexpressed in head and neck squamous cell carcinomaCited by: 17
Author(s): Hui Xu, Xiaohong Chen, Zhigang Huang
Software Mentions: 1
Published: over 5 years ago
10.1186/s12935-019-0816-z
OTU deubiquitinase 4 is silenced and radiosensitizes non-small cell lung cancer cells via inhibiting DNA repairCited by: 17
Author(s): Zhiqiang Wu, Minghan Qiu, Yu Guo, Jian Zhao, Zhuang Liu, Hui Wang, Maobin Meng, Zhiyong Yuan, Zeyun Mi
Software Mentions: 1
Published: over 5 years ago
10.1186/s12935-020-01597-x
Novel sequential treatment with palbociclib enhances the effect of cisplatin in RB-proficient triple-negative breast cancerCited by: 11
Author(s): Ya‐Jing Huang, Hao Wu, Xingrui Li
Software Mentions: 1
Published: about 4 years ago
10.1186/2049-3002-1-14
Expression and phosphorylation of the AS160_v2 splice variant supports GLUT4 activation and the Warburg effect in multiple myelomaCited by: 18
Author(s): Javelin C. Cheng, Samuel K. McBrayer, Cristian Coarfa, Sevim Dalva-Aydemir, Preethi H. Gunaratne, John D. Carpten, Jonathan J. Keats, Steven T. Rosen, Mala Shanmugam
Software Mentions: 1
Published: over 11 years ago
10.1186/s40575-016-0037-x
A large deletion in RPGR causes XLPRA in Weimaraner dogsCited by: 17
Author(s): Regina Kropatsch, Denis A. Akkad, Matthias Frank, Carsten U Rosenhagen, Janine Altmüller, Peter Nürnberg, Jórg T. Epplen, Gabriele Dekomien
Software Mentions: 1
Published: over 8 years ago
10.1186/s42826-020-00065-x
Tamoxifen-inducible cardiac-specific Cre transgenic mouse using VIPR2 intronCited by: 2
Author(s): Hyun Jung Chin, So-Young Lee, Daekee Lee
Software Mentions: 1
Published: about 4 years ago
10.1038/s41375-018-0311-x
Global long terminal repeat activation participates in establishing the unique gene expression programme of classical Hodgkin lymphomaCited by: 16
Author(s): Benjamin Edginton-White, Pierre Cauchy, Salam A. Assi, Sven Hartmann, Arthur D. Riggs, Stephan Mathas, Peter N. Cockerill, Constanze Bonifer
Software Mentions: 1
Published: almost 6 years ago
10.3390/life11060510
Genomic Regions and Candidate Genes Linked to Capped Hock in PigCited by: 3
Author(s): Lyubov Getmantseva, Maria Kolosova, Faridun Bakoev, Anna Zimina, Siroj Bakoev
Software Mentions: 1
Published: over 3 years ago
10.3390/life11080861
Analysis of Homozygous-by-Descent (HBD) Segments for Purebred and Crossbred Pigs in RussiaCited by: 4
Author(s): Siroj Bakoev, Anatoly Kolosov, Faridun Bakoev, Olga Kostyunina, Nekruz Bakoev, Т. С. Романец, Olga Koshkina, Lyubov Getmantseva
Software Mentions: 1
Published: over 3 years ago
10.26508/lsa.202000666
BACH family members regulate angiogenesis and lymphangiogenesis by modulating VEGFC expressionCited by: 19
Author(s): Batya Cohen, Hanoch Tempelhof, Tal Raz, Roni Oren, Julian Nicenboim, Filip Bochner, Ron Even, Adam Jelinski, Raya Eilam, Shifra Ben‐Dor, Yoseph Adaddi, Ofra Golani, Shlomi Lazar, Karina Yaniv, Michal Neeman
Software Mentions: 1
Published: over 4 years ago
10.26508/lsa.201900515
Laminin is the ECM niche for trophoblast stem cellsCited by: 21
Author(s): Daiji Kiyozumi, Itsuko Nakano, Ryoko Sato‐Nishiuchi, Satoshi Tanaka, Kiyotoshi Sekiguchi
Software Mentions: 1
Published: almost 5 years ago
10.26508/lsa.202101028
Hierarchical dinucleotide distribution in genome along evolution and its effect on chromatin packingCited by: 2
Author(s): Zhicheng Cai, Yongrui He, Sirui Liu, Yue Xue, Hui Quan, Ling Zhang, Yi Qin Gao
Software Mentions: 1
Published: over 3 years ago
10.1007/s00335-015-9583-x
Creating reference gene annotation for the mouse C57BL6/J genome assemblyCited by: 179
Author(s): Jonathan M. Mudge, Jennifer Harrow
Software Mentions: 1
Published: over 9 years ago
10.1007/s00335-015-9571-1
A unified gene catalog for the laboratory mouse reference genomeCited by: 16
Author(s): Yunxia Zhu, Joel E. Richardson, Paul Hale, Richard M. Baldarelli, Deborah J. Reed, Jill M Recla, R. Sinclair, T. B. K. Reddy, Carol J. Bult
Software Mentions: 1
Published: over 9 years ago
10.3390/medsci7020016
Integrated FISH, Karyotyping and aCGH Analyses for Effective Prenatal Diagnosis of Common Aneuploidies and Other Cytogenomic AbnormalitiesCited by: 7
Author(s): Hongyan Chai, Autumn DiAdamo, Brittany Grommisch, Jennifer Boyle, Katherine Amato, Dongmei Wang, Jiadi Wen, Peining Li
Software Mentions: 1
Published: almost 6 years ago
10.3390/metabo11040238
A Medicago truncatula Metabolite Atlas Enables the Visualization of Differential Accumulation of Metabolites in Root TissuesCited by: 2
Author(s): Clayton Kranawetter, Shuai Zeng, Trupti Joshi, Lloyd W. Sumner
Software Mentions: 1
Published: over 3 years ago
10.1111/1751-7915.12135
Microbial strain collections and informationCited by: 3
Author(s): Lawrence P. Wackett
Software Mentions: 1
Published: over 10 years ago
10.1186/1475-2859-8-53
Open access to sequence: Browsing the Pichia pastoris genomeCited by: 54
Author(s): Diethard Mattanovich, Nico Callewaert, Pierre Rouzé, Yao‐Cheng Lin, Alexandra B. Graf, Andréas Redl, Petra Tiels, Brigitte Gasser, Kristof De Schutter
Software Mentions: 1
Published: almost 16 years ago
10.1186/2042-5783-2-9
Bioinformatic identification of Mycobacterium tuberculosis proteins likely to target host cell mitochondria: virulence factors?Cited by: 21
Author(s): María Maximina Bertha Moreno-Altamirano, Iris Selene Paredes-González, Clara Espitia, Mauricio Santiago-Maldonado, Rogelio Hernández-Pando, Francisco Javier Sánchez‐García
Software Mentions: 1
Published: almost 12 years ago
10.17912/micropub.biology.000339
Software Mentions: 110.1186/1759-8753-3-15
Cell type-specific termination of transcription by transposable element sequencesCited by: 21
Author(s): Andrew B. Conley, I. King Jordan
Software Mentions: 1
Published: almost 13 years ago
10.1186/s13100-018-0135-2
Phylogenomic analysis reveals splicing as a mechanism of parallel evolution of non-canonical SVAs in hominine primatesCited by: 6
Author(s): Annette Damert
Software Mentions: 1
Published: about 6 years ago
10.1186/s13100-020-00222-y
LINE-1 ORF1p does not determine substrate preference for human/orangutan SVA and gibbon LAVACited by: 1
Author(s): Annette Damert
Software Mentions: 1
Published: over 4 years ago
10.1186/2040-2392-5-5
Identification of rare DNA sequence variants in high-risk autism families and their prevalence in a large case/control populationCited by: 32
Author(s): Nori Matsunami, Charles H. Hensel, Lisa Baird, Jeff Stevens, Brith Otterud, Tami Leppert, Tena Varvil, Dexter Hadley, Joseph T. Glessner, Renata Pellegrino, Cecilia Kim, Kelly Thomas, Fengxiang Wang, F. George Otieno, Karen S. Ho, G. Bryce Christensen, Dongying Li, Rytis Prekeris, Christophe G Lambert, Hákon Hákonarson, M. Leppert
Software Mentions: 1
Published: almost 11 years ago
10.1186/s13229-017-0171-7
Critical region within 22q11.2 linked to higher rate of autism spectrum disorderCited by: 31
Author(s): Caitlin C. Clements, Tara L. Wenger, Alisa Zoltowski, Jennifer R. Bertollo, Judith S. Miller, Ashley de Marchena, Lauren Mitteer, John C. Carey, Benjamin E. Yerys, Elaine H. Zackai, Beverly S. Emanuel, Donna M. McDonald‐McGinn
Software Mentions: 1
Published: about 7 years ago
10.1186/2040-2392-4-8
Whole-genome sequencing in an autism multiplex familyCited by: 73
Author(s): Lingling Shi, Xu Zhang, Ryan Golhar, F. George Otieno, Mingze He, Cuiping Hou, Cecilia Kim, Brendan J. Keating, Gholson J. Lyon, Kai Wang, Hákon Hákonarson
Software Mentions: 1
Published: over 11 years ago
10.1093/molbev/msv172
hapbin: An Efficient Program for Performing Haplotype-Based Scans for Positive Selection in Large Genomic Datasets: Fig. 1.Cited by: 55
Author(s): Colin MacLean, Neil Chue Hong, James Prendergast
Software Mentions: 1
Published: over 9 years ago
10.1093/molbev/msv265
Comparative Genomics Identifies Epidermal Proteins Associated with the Evolution of the Turtle ShellCited by: 43
Author(s): Karin Brigit Holthaus, Bettina Strasser, Wolfgang Sipos, Heiko A. Schmidt, Veronika Mlitz, Supawadee Sukseree, Anton Weissenbacher, Erwin Tschachler, Lorenzo Alibardi, Leopold Eckhart
Software Mentions: 1
Published: almost 9 years ago
10.1186/s13041-020-00595-4
Identification of a novel Shank2 transcriptional variant in Shank2 knockout mouse model of autism spectrum disorderCited by: 8
Author(s): Yong Seok Lee, Nam Kyung Yu, Jeewan Chun, Jung Eun Yang, Chae Seok Lim, Hyopil Kim, Gaeun Park, Jin A Lee, Kyung-Min Lee, Bong Kiun Kaang, Jae Hyung Lee
Software Mentions: 1
Published: over 4 years ago
10.1186/1756-6606-4-14
Identification of a novel intronic enhancer responsible for the transcriptional regulation of musashi1 in neural stem/progenitor cellsCited by: 23
Author(s): S. Kawase, Toshio Imai, Chikako Miyauchi-Hara, Kunio Yaguchi, Yoshinori Nishimoto, Shin Ichi Fukami, Yuji Matsuzaki, Atsushi Miyawaki, Shigeyoshi Itohara, Hideyuki Okano
Software Mentions: 1
Published: over 13 years ago
10.1186/s12943-020-01277-4
The PVT1 lncRNA is a novel epigenetic enhancer of MYC, and a promising risk-stratification biomarker in colorectal cancerCited by: 51
Author(s): Kunitoshi Shigeyasu, Shusuke Toden, Tomohiro Ozawa, Takatoshi Matsuyama, Takeshi Nagasaka, Toshiaki Ishikawa, Debashis Sahoo, Pradipta Ghosh, Hiroyuki Uetake, Toshiyoshi Fujiwara, Ajay Goel
Software Mentions: 1
Published: about 4 years ago
10.1186/1476-4598-13-120
A novel approach to identify driver genes involved in androgen-independent prostate cancerCited by: 44
Author(s): Ellyn N. Schinke, Victor M. Bii, Arun Kumar Nalla, Dustin T. Rae, Laura Tedrick, Gary G. Meadows, Grant D. Trobridge
Software Mentions: 1
Published: over 10 years ago
10.1016/j.molcel.2015.01.011
BRCA1 Recruitment to Transcriptional Pause Sites Is Required for R-Loop-Driven DNA Damage RepairCited by: 342
Author(s): Elodie Hatchi, Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula, Stoil D. Dimitrov, Shailja Pathania, Kristine McKinney, Matthew L. Eaton, M Kellis, Sarah J. Hill, Giovanni Parmigiani, Nick J. Proudfoot, David M. Livingston
Software Mentions: 1
Published: almost 10 years ago
10.1007/s11010-021-04103-7
Evidence of synergism among three genetic variants in a patient with LMNA-related lipodystrophy and amyotrophic lateral sclerosis leading to a remarkable nuclear phenotypeCited by: 3
Author(s): Kathryn Volkening, Sali M.K. Farhan, Jennifer L. Kao, Cheryl Leystra-Lantz, Lee Cyn Ang, Adam D. McIntyre, Jian Wang, Robert A. Hegele, Michael J. Strong
Software Mentions: 1
Published: over 3 years ago
10.1186/s40348-020-00102-8
Nup133 and ERα mediate the differential effects of hyperoxia-induced damage in male and female OPCsCited by: 7
Author(s): Donna Elizabeth Sunny, Elke Hammer, Sebastian Strempel, Christy Joseph, Himanshu Manchanda, Till Ittermann, Stephanie Hübner, Frank Ulrich Weiß, Uwe Völker, Matthias Heckmann
Software Mentions: 1
Published: about 4 years ago
10.1074/mcp.RA117.000155
Detection of Proteome Diversity Resulted from Alternative Splicing is Limited by Trypsin Cleavage SpecificityCited by: 68
Author(s): Xiaojing Wang, Simona G. Codreanu, Bo Wen, Kai Li, Matthew Chambers, D.C. Liebler, Bing Zhang
Software Mentions: 1
Published: over 6 years ago
10.1186/s13039-016-0266-4
Genome wide array-CGH and qPCR analysis for the identification of genome defects in Williams’ syndrome patients in Saudi ArabiaCited by: 5
Author(s): Ibtessam R Hussein, Afaf Magbooli, Etimad Huwait, Adeel G. Chaudhary, Rima S Bader, Mamdooh Gari, Fai T. Ashgan, Maha Mohsin Al-Quaiti, Adel M. Abuzenadah, Mohammed Al‐Qahtani
Software Mentions: 1
Published: over 8 years ago
10.1186/s13039-017-0311-y
Molecular cytogenetic characterisation of a novel de novo ring chromosome 6 involving a terminal 6p deletion and terminal 6q duplication in the different arms of the same chromosomeCited by: 10
Author(s): Nikolai Paul Pace, Frideriki Maggouta, Melissa Twigden, Isabella Borg
Software Mentions: 1
Published: over 7 years ago
10.1186/s13039-021-00554-1
Terminal 10q26.12 deletion is associated with neonatal asymmetric crying facies syndrome: a case report and literature reviewCited by: 0
Author(s): Qinghong Li, Chunmei Sun, Jinzhen Guo, Zhang Wen, Liping Zhang
Software Mentions: 1
Published: over 3 years ago
10.1186/s13039-020-00510-5
Non-classical 1p36 deletion in a patient with Duane retraction syndrome: case report and literature reviewCited by: 2
Author(s): Emiy Yokoyama, Camilo E. Villarroel, Sinhué Diaz, Victoria del Castillo, Patricia Pérez-Vera, Consuelo Salas-Labadía, S Gómez, Reneé Barreda, Bertha Molina, Sara Frías
Software Mentions: 1
Published: about 4 years ago
10.1186/s13039-015-0153-4
High rates of submicroscopic aberrations in karyotypically normal acute lymphoblastic leukemiaCited by: 16
Author(s): Moneeb A.K. Othman, Joana B. Melo, Isabel M. Carreira, Martina Rinčić, Anita Glaser, Beata Grygalewicz, Bernd Gruhn, Kathleen Wilhelm, Katharina Rittscher, Britta Meyer, Maria Luíza Macedo Silva, Terezinha de Jesus Marques Salles, Thomas Liehr
Software Mentions: 1
Published: over 9 years ago
10.1186/s13039-017-0308-6
Incidence of the 22q11.2 deletion in a large cohort of miscarriage samplesCited by: 25
Author(s): Melissa Maisenbacher, Katrina Merrion, B. Pettersen, Michael Young, Kiyoung Paik, Sushma Iyengar, Stephanie Kareht, Styrmir Sigurjonsson, Zachary Demko, Kimberly Martin
Software Mentions: 1
Published: over 7 years ago
10.1186/1755-8166-1-11
Chromosomal assignment of canine THADA gene to CFA 10q25Cited by: 3
Author(s): Jan T. Soller, Claudia Beuing, Hugo Murua Escobar, Susanne Winkler, Nicola Reimann-Berg, Norbert Drieschner, G. Dolf, C. Schelling, Ingo Nolte, Jörn Bullerdiek
Software Mentions: 1
Published: over 16 years ago
10.1186/s13039-014-0075-6
Investigation of selected genomic deletions and duplications in a cohort of 338 patients presenting with syndromic obesity by multiplex ligation-dependent probe amplification using synthetic probesCited by: 10
Author(s): Carla Sustek D’Angelo, Monica Castro Varela, Cláudia Irene Emílio de Castro, Chong Kim, Débora Romeo Bertola, Charles Marques Lourenço, Ana Beatriz Alvarez Perez, Célia Priszkulnik Koiffmann
Software Mentions: 1
Published: about 10 years ago
10.1186/1755-8166-4-3
Evidence-based genomic diagnosis characterized chromosomal and cryptic imbalances in 30 elderly patients with myelodysplastic syndrome and acute myeloid leukemiaCited by: 35
Author(s): Renu Bajaj, Feifei Xu, Bixia Xiang, Katherine Wilcox, Autumn DiAdamo, Rachana A. Kumar, Alexandra Pietraszkiewicz, Stephanie Halene, Peining Li
Software Mentions: 1
Published: almost 14 years ago
10.3390/molecules23092191
ELF3, ELF5, EHF and SPDEF Transcription Factors in Tissue Homeostasis and CancerCited by: 68
Author(s): Ian Y. Luk, Camilla M. Reehorst, John M. Mariadason
Software Mentions: 1
Published: about 6 years ago
10.3390/molecules191118721
Methanolic Extracts of Solieria robusta Inhibits Proliferation of Oral Cancer Ca9-22 Cells via Apoptosis and Oxidative StressCited by: 36
Author(s): Y. Albert Yen, Ammad Ahmad Farooqı, Kun-Tzu Li, Ghazala Butt, Jen‐Yang Tang, Chang‐Yi Wu, Yuan-Bin Cheng, Ming‐Feng Hou, Hsueh‐Wei Chang
Software Mentions: 1
Published: about 10 years ago
10.1002/mgg3.1086
Haploinsufficiency of the <i>FOXA2</i> associated with a complex clinical phenotypeCited by: 5
Author(s): Idris Mohammed, Sara Al‐Khawaga, David Bohanna, Abdusamea Shabani, Faiyaz Ahmad Khan, Donald R. Love, Zafar Nawaz, Khalid Hussain
Software Mentions: 1
Published: over 4 years ago
10.1002/mgg3.107
Diagnosis of an imprinted‐gene syndrome by a novel bioinformatics analysis of whole‐genome sequences from a family trioCited by: 13
Author(s): Dale L. Bodian, Benjamin D. Solomon, Alina Khromykh, Dzung C. Thach, Ramaswamy K. Iyer, Kathleen Link, Robin Baker, Rajiv Baveja, Joseph G. Vockley, John E. Niederhuber
Software Mentions: 1
Published: about 10 years ago
10.1002/mgg3.1300
Reclassification of genetic variants in children with long QT syndromeCited by: 13
Author(s): Dominik S. Westphal, Tobias Burkard, Alexander Moscu‐Gregor, Roman Gebauer, Gabriele Hessling, Cordula M. Wolf
Software Mentions: 1
Published: over 4 years ago
10.1002/mgg3.295
Pitfalls in genetic testing: a case of a SNP in primer-annealing region leading to allele dropout in <i>BRCA1</i>Cited by: 10
Author(s): Felipe Cavalcanti Carneiro da Silva, Giovana Tardin Torrezan, Rafael Canfield Brianese, Raquel Stabellini
Software Mentions: 1
Published: over 7 years ago
10.1002/mgg3.61
<i><scp>CTSC</scp></i>and Papillon–Lefèvre syndrome: detection of recurrent mutations in<scp>H</scp>ungarian patients, a review of published variants and database updateCited by: 47
Author(s): Nikoletta Nagy, Péter Vályi, Zsanett Csoma, Adrienn Sulák, Kornélia Tripolszki, Katalin Farkas, Ekaterine Paschali, Ferenc Papp, László Tóth, Beáta Fábos, Lajos Kemény, Katalin Nagy, Márta Széll
Software Mentions: 1
Published: almost 11 years ago
10.1007/s12035-018-1444-7
FOXG1 Regulates PRKAR2B Transcriptionally and Posttranscriptionally via miR200 in the Adult HippocampusCited by: 18
Author(s): Stefan Weise, G Arumugam, Alejandro Villarreal, Pavankumar Videm, Stefanie Heidrich, Nils Nebel, Verónica I. Dumit, Farahnaz Sananbenesi, Viktoria Reimann, Madeline Craske, Oliver Schilling, Wolfgang R. Hess, André Fischer, Rolf Backofen, Tanja Vogel
Software Mentions: 1
Published: almost 6 years ago
10.1038/s41380-018-0210-6
Identification of ADHD risk genes in extended pedigrees by combining linkage analysis and whole-exome sequencingCited by: 15
Author(s): Jordi Corominas, Marieke Klein, Tetyana Zayats, Olga Rivero, Georg C. Ziegler, Marc Pauper, Kornelia Neveling, Geert Poelmans, Charline Jansch, Evgeniy Svirin, Julia Geißler, Heike Weber, Andreas Reif, Alejandro Arias Vásquez, Tessel E. Galesloot, Lambertus A. Kiemeney, Jan K. Buitelaar, Josep Antoni Ramos-Quiroga, Bru Cormand, Marta Ribasés, Kristian Hveem, Maiken Elvestad Gabrielsen, Per Hoffmann, Sven Cichon, Jan Haavik, Stefan Johansson, Christian Jacob, Marcel Romanos, Barbara Franke, Klaus‐Peter Lesch
Software Mentions: 1
Published: over 6 years ago
10.1038/s41380-019-0561-7
The Netrin-1/DCC guidance system: dopamine pathway maturation and psychiatric disorders emerging in adolescenceCited by: 53
Author(s): Daniel E. Vosberg, Marco Leyton, Cecilia Flores
Software Mentions: 1
Published: about 5 years ago
10.1038/s41380-019-0440-2
Circadian glucocorticoid oscillations preserve a population of adult hippocampal neural stem cells in the aging brainCited by: 48
Author(s): Marijn Schouten, Pascal Bielefeld, Laura García-Corzo, Emma M.J. Passchier, Simona Gradari, Tassilo Jungenitz, Meritxell Pons-Espinal, Elias Gebara, Soraya Martín‐Suárez, Paul J. Lucassen, Helga E. de Vries, José Luís Trejo, Stephan W. Schwarzacher, Davide De Pietri Tonelli, Nicolas Toni, Helena Mira, Juan M. Encinas, Carlos P. Fitzsimons
Software Mentions: 1
Published: over 5 years ago
10.1038/mp.2013.68
708 Common and 2010 rare DISC1 locus variants identified in 1542 subjects: analysis for association with psychiatric disorder and cognitive traitsCited by: 52
Author(s): Pippa A. Thomson, Jennifer Parla, Allan F. McRae, Melissa Kramer, Kamna Ramakrishnan, Jingjing Yao, Dinesh C. Soares, Shane McCarthy, Stewart W. Morris, Lorna Cardone, Stephen P. Cass, Elena Ghiban, William Hennah, Kathryn Evans, Daniella Rebolini, J. Kirsty Millar, Sarah E. Harris, John M. Starr, Donald J. MacIntyre, Andrew M. McIntosh, James D. Watson, Ian J. Deary, Peter M. Visscher, Douglas Blackwood, W. Richard McCombie, David J. Porteous
Software Mentions: 1
Published: over 11 years ago
10.1038/mtm.2014.55
Pigtailed macaques as a model to study long-term safety of lentivirus vector-mediated gene therapy for hemoglobinopathiesCited by: 11
Author(s): Hans–Peter Kiem, Paritha Arumugam, Christopher R. Burtner, Catherine Fox, Brian C. Beard, Phillip Dexheimer, Jennifer E. Adair, Punam Malik
Software Mentions: 1
Published: almost 11 years ago
10.1016/j.omto.2021.05.013
METTL3 increases cisplatin chemosensitivity of cervical cancer cells via downregulation of the activity of RAGECited by: 16
Author(s): Ruyi Li, Yizuo Song, Xin Chen, Maoping Chu, Zhi-wei Wang, Xueqiong Zhu
Software Mentions: 1
Published: about 3 years ago
10.1186/s13567-016-0363-8
Chicken interferome: avian interferon-stimulated genes identified by microarray and RNA-seq of primary chick embryo fibroblasts treated with a chicken type I interferon (IFN-α)Cited by: 38
Author(s): Efstathios S. Giotis, Rebecca Robey, Natalie G. Skinner, Christopher Tomlinson, Stephen Goodbourn, Michael A. Skinner
Software Mentions: 1
Published: over 8 years ago
10.1186/1743-422X-7-262
Genome-wide analysis of host-chromosome binding sites for Epstein-Barr Virus Nuclear Antigen 1 (EBNA1)Cited by: 74
Author(s): Fang Lü, Priyankara Wikramasinghe, Julie Norseen, Kevin Tsai, Pu Wang, Louise C. Showe, Ramana V. Davuluri, Paul M. Lieberman
Software Mentions: 1
Published: about 14 years ago
10.1186/1743-422X-10-73
Cellular phosphoinositides and the maturation of bluetongue virus, a non-enveloped capsid virusCited by: 10
Author(s): Bishnupriya Bhattacharya, Polly Roy
Software Mentions: 1
Published: over 11 years ago
10.1186/s12985-018-0922-x
MicroRNA transcriptome analysis of porcine vital organ responses to immunosuppressive porcine cytomegalovirus infectionCited by: 7
Author(s): Xiao Liu, Haoche Wei, Shan Liao, Jian‐Heng Ye, Ling Zhu, Zhinan Xu
Software Mentions: 1
Published: almost 7 years ago
10.1016/j.virol.2015.10.026
Rabbit CD200R binds host CD200 but not CD200-like proteins from poxvirusesCited by: 10
Author(s): Munir Akkaya, L.S. Kwong, Erdem Akkaya, Deborah Hatherley, A. Neil Barclay
Software Mentions: 1
Published: almost 9 years ago
10.3390/v5030998
Discovering Host Genes Involved in the Infection by the Tomato Yellow Leaf Curl Virus Complex and in the Establishment of Resistance to the Virus Using Tobacco Rattle Virus-based Post Transcriptional Gene SilencingCited by: 37
Author(s): Henryk Czosnek, Assaf Eybishtz, Dagan Sade, Rena Gorovits, Iris Sobol, Eduardo R. Bejarano, Tábata Rosas-Díaz, Rosa Lozano‐Durán
Software Mentions: 1
Published: over 11 years ago
10.3390/v9040080
Protein-Coding Genes’ Retrocopies and Their FunctionsCited by: 56
Author(s): Magdalena Regina Kubiak, Izabela Makałowska
Software Mentions: 1
Published: over 7 years ago
10.3390/v9080210
Viral Ubiquitin Ligase Stimulates Selective Host MicroRNA Expression by Targeting ZEB Transcriptional RepressorsCited by: 13
Author(s): Gabriel Lutz, Igor Jurak, Eui‐Tae Kim, Ju Youn Kim, Michael Hackenberg, Andrew M. Leader, Michelle L. Stoller, Donna M. Fekete, Matthew D. Weitzman, Donald M. Coen, Angus C. Wilson
Software Mentions: 1
Published: over 7 years ago
10.1186/s42492-019-0040-7
Painting image browser applying an associate-rule-aware multidimensional data visualization techniqueCited by: 3
Author(s): Ayaka Kaneko, Akiko Komatsu, Takayuki Itoh, Florence Ying Wang
Software Mentions: 1
Published: almost 5 years ago
10.12688/wellcomeopenres.15126.2
Variant calling on the GRCh38 assembly with the data from phase three of the 1000 Genomes ProjectCited by: 62
Author(s): Ernesto Lowy-Gallego, Susan Fairley, Xiangqun Zheng-Bradley, Magali Ruffier, Laura Clarke, Paul Flicek
Software Mentions: 1
Published: almost 5 years ago
10.3897/zookeys.150.2248
Data standards, sense and stability: Scratchpads, the ICZN and ZooBankCited by: 0
Author(s): Edward Baker, Ellinor Michel
Software Mentions: 1
Published: almost 13 years ago
10.1186/s40851-017-0071-x
An efficient system for homology-dependent targeted gene integration in medaka (Oryzias latipes)Cited by: 29
Author(s): Yu Murakami, Satoshi Ansai, Akari Yonemura, Masato Kinoshita
Software Mentions: 1
Published: over 7 years ago
10.3390/pathogens10050552
Occurrence of Legionella spp. in Man-Made Water Sources: Isolates Distribution and Phylogenetic Characterization in the Emilia-Romagna RegionCited by: 9
Author(s): Marta Mazzotta, Silvano Salaris, Maria Rosaria Pascale, Luna Girolamini, Sandra Cristino
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.7558
The sugarcane mitochondrial genome: assembly, phylogenetics and transcriptomicsCited by: 13
Author(s): Dyfed Lloyd Evans, Thandekile Thandiwe Hlongwane, Suvarna Joshi, Diego Mauricio Riaño-Pachón
Software Mentions: 1
Published: about 5 years ago
10.7717/peerj.639
Associating disease-related genetic variants in intergenic regions to the genes they impactCited by: 22
Author(s): Geoff Macintyre, Antonio Jimeno-Yepes, Cheng Soon Ong, Karin Verspoor
Software Mentions: 1
Published: about 10 years ago
10.7717/peerj.10312
Evolutionary analysis of chloroplast tRNA of Gymnosperm revealed the novel structural variation and evolutionary aspectCited by: 4
Author(s): Tingting Zhang, Yi-Kun Hou, Ting Yang, Shu-Ya Zhang, Ming Yue, Jianni Liu, Zhong-Hu Li
Software Mentions: 1
Published: almost 4 years ago
10.1007/s11095-017-2130-6
Network Reconstruction Reveals that Valproic Acid Activates Neurogenic Transcriptional Programs in Adult Brain Following Traumatic InjuryCited by: 24
Author(s): Gerald A. Higgins, Patrick E. Georgoff, Vahagn C. Nikolian, Ari Allyn-Feuer, Brian Pauls, Richard Higgins, Hasan E. Alam
Software Mentions: 1
Published: over 7 years ago
10.1098/rstb.2009.0219
Genome-wide scans for footprints of natural selectionCited by: 294
Author(s): Tarás K. Oleksyk, Michael W. Smith, Stephen J. O’Brien
Software Mentions: 1
Published: almost 15 years ago
10.1098/rstb.2020.0157
MolluscDB: a genome and transcriptome database for molluscsCited by: 13
Author(s): Carlos Caurcel, Dominik R. Laetsch, Richard Challis, Sujai Kumar, Karim Gharbi, Mark Blaxter
Software Mentions: 1
Published: over 3 years ago
10.1111/pbi.13014
Molecular tools enabling pennycress (<i>Thlaspi arvense</i>) as a model plant and oilseed cash cover cropCited by: 70
Author(s): Michaela McGinn, Winthrop B. Phippen, Ratan Chopra, Sunil Bansal, Brice A. Jarvis, Mary E. Phippen, Kevin M. Dorn, Maliheh Esfahanian, Tara J. Nazarenus, Edgar B. Cahoon, Timothy P. Durrett, M. David Marks, John C. Sedbrook
Software Mentions: 1
Published: about 6 years ago
10.1007/s00299-014-1666-8
OsABCG15 encodes a membrane protein that plays an important role in anther cuticle and pollen exine formation in riceCited by: 49
Author(s): Lina Wu, Yusheng Guan, Zigang Wu, Kun Yang, Jun Lv, Richard Converse, Huang Yuanxin, Jin-Xiong MaoJ. Mao, Yong Zhao, Zhongwei Wang, Min HengQi, Dongyang Kan, Yi Zhang
Software Mentions: 1
Published: over 10 years ago
10.1002/pld3.8
CoGe LoadExp+: A web‐based suite that integrates next‐generation sequencing data analysis workflows and visualizationCited by: 20
Author(s): Jeffrey W. Grover, Matthew Bomhoff, Sean Davey, Brian D. Gregory, Rebecca A. Mosher, Eric Lyons
Software Mentions: 1
Published: over 7 years ago
10.3390/plants8100406
The Plant NF-Y DNA Matrix In Vitro and In VivoCited by: 6
Author(s): Nerina Gnesutta, Matteo Chiara, Andrea Bernardini, Matteo Balestra, David S. Horner, Roberto Mantovani
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pbio.3000684
Precise genomic mapping of 5-hydroxymethylcytosine via covalent tether-directed sequencingCited by: 12
Author(s): Povilas Gibas, Milda Narmontė, Zdislav Staševskij, Juozas Gordevičius, Saulius Klimašauskas, Edita Kriukienė
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pbio.3001045
Signatures of host–pathogen evolutionary conflict reveal MISTR—A conserved MItochondrial STress Response networkCited by: 17
Author(s): Mahsa Sorouri, Tyron Chang, Palmy R. Jesudhasan, Chelsea Pinkham, Nels C. Elde, Dustin C. Hancks
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pbio.2003067
Spliced integrated retrotransposed element (SpIRE) formation in the human genomeCited by: 10
Author(s): Peter A. Larson, John B. Moldovan, Naveen Jasti, Jeffrey M. Kidd, Christine R. Beck, John V. Moran
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pbio.1001890
A Novel Nodal Enhancer Dependent on Pluripotency Factors and Smad2/3 Signaling Conditions a Regulatory Switch During Epiblast MaturationCited by: 42
Author(s): Costis Papanayotou, Ataaillah Benhaddou, Anne Camus, Aitana Perea-Gómez, Alice Jouneau, Valérie Mezger, Francina Langa, Sascha Ott, Délara Sabéran‐Djoneidi, Jérôme Collignon
Software Mentions: 1
Published: over 10 years ago