pypi: browser | Projects | Ecosyste.ms: Papers

10.1186/s40101-018-0169-7

Association of EGLN1 genetic polymorphisms with SpO2 responses to acute hypobaric hypoxia in a Japanese cohort
Cited by: 13
Author(s): Yoshiki Yasukochi, Takayuki Nishimura, Midori Motoi, Shigeki Watanuki
Software Mentions: 1
Published: over 8 years ago

10.1098/rsob.120054

Transcriptome sequencing of black grouse ( <i>Tetrao tetrix</i> ) for immune gene discovery and microsatellite development
Cited by: 26
Author(s): Biao Wang, Robert Ekblom, Todd A. Castoe, Eleanor P. Jones, Radoslav Kozma, Erik Bongcam‐Rudloff, David D. Pollock, Jacob Höglund
Software Mentions: 1
Published: over 14 years ago

10.1098/rsob.180131

DNA methylation subpatterns at distinct regulatory regions in human early embryos
Cited by: 15
Author(s): Rongsong Luo, Chunling Bai, Lei Yang, Zhong Zheng, Guanghua Su, Guang Gao, Zhuying Wei, Yongchun Zuo, Guangpeng Li
Software Mentions: 1
Published: almost 8 years ago

10.2174/1874192401711010084

Interpreting the Mechanism of APOE (p.Leu167del) Mutation in the Incidence of Familial Hypercholesterolemia; An In-silico Approach
Cited by: 11
Author(s): Omran M. Rashidi, Fatima Amanullah H.Nazar, Mohamed Nabil Alama, Zuhier Awan
Software Mentions: 1
Published: almost 9 years ago

10.1186/1750-1172-7-S2-A11

Speeding up research with the Semantic Web
Cited by: 1
Author(s): Marco Roos, Erik Schultes, Barend Mons
Software Mentions: 1
Published: over 14 years ago

10.1186/s13023-015-0251-8

Rare diseases in ICD11: making rare diseases visible in health information systems through appropriate coding
Cited by: 84
Author(s): Ségolène Aymé, Bertrand Bellet, Ana Rath
Software Mentions: 1
Published: over 11 years ago

10.1186/s12967-018-1708-z

Mutational and phenotypic spectrum of OTOF-related auditory neuropathy in Koreans: eliciting reciprocal interaction between bench and clinics
Cited by: 17
Author(s): Bong Jik Kim, Jeong Hun Jang, Jin Hee Han, Hye Rim Park, Doo Yi Oh, Seungmin Lee, Min Young Kim, Ah Reum Kim, Chung Lee, Nayoung K.D. Kim, Woong-Yang Park, Yun Hoon Choung, Byung Yoon Choi
Software Mentions: 1
Published: almost 8 years ago

10.1155/2018/7640272

Myoblast Myogenic Differentiation but Not Fusion Process Is Inhibited via MyoD Tetraplex Interaction
Cited by: 5
Author(s): Stefano Testa, Pietro D’Addabbo, Ersilia Fornetti, Roberta Belli, Claudia Fuoco, Sergio Bernardini, Stefano Cannata, Domenico Frezza, Cesare Gargioli
Software Mentions: 1
Published: over 8 years ago

10.1186/s12986-015-0050-1

Epigenetic effects of casein-derived opioid peptides in SH-SY5Y human neuroblastoma cells
Cited by: 25
Author(s): Malav Suchin Trivedi, Nathaniel Hodgson, Stephen J. Walker, Geert Trooskens, Vineeth Nair, Richard C. Deth
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12986-021-00600-0

Modulation and bioinformatics screening of hepatic mRNA-lncRNAs (HML) network associated with insulin resistance in prediabetic and exercised mice
Cited by: 6
Author(s): Fatemeh Kazeminasab, Seyed Mohammad Marandi, Maryam Baharlooie, Mohammad Hossein Nasr-Esfahani, Kamran Ghaedi
Software Mentions: 1
Published: about 5 years ago

10.3390/nu11020325

Divergent Effectiveness of Multispecies Probiotic Preparations on Intestinal Microbiota Structure Depends on Metabolic Properties
Cited by: 26
Author(s): Michele Biagioli, Daniela Capobianco, Adriana Carino, Silvia Marchianò, Federica Chiara, Patrizia Ricci, Eleonora Distrutti, Stefano Fiorucci
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-00301-w

MKL1 defines the H3K4Me3 landscape for NF-κB dependent inflammatory response
Cited by: 47
Author(s): Liming Yu, Fei Fang, Xin Dai, Huihui Xu, Xinming Qi, Mingming Fang, Yong Xu
Software Mentions: 1
Published: over 9 years ago

10.3390/nu5051706

Genome-Wide Association Study of Serum Selenium Concentrations
Cited by: 9
Author(s): Jian Gong, Li Hsu, Tabitha A. Harrison, Irena B. King, Stefan Stürup, Xiaoling Song, David Duggan, Yan Liu, Carolyn M. Hutter, Stephen J. Chanock, Charles B. Eaton, James R. Marshall, Ulrike Peters
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-017-03067-3

Identification of the functional variant driving ORMDL3 and GSDMB expression in human chromosome 17q12-21 in primary biliary cholangitis
Cited by: 23
Author(s): Yuki Hitomi, Kazuyuki Kojima, M. Kawashima, Yosuke Kawai, Nao Nishida, Yoshihiro Aiba, Michio Yasunami, Masao Nagasaki, Minoru Nakamura, Katsushi Tokunaga
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-04657-x

Genetic targeting and anatomical registration of neuronal populations in the zebrafish brain with a new set of BAC transgenic tools
Cited by: 56
Author(s): Dominique Förster, Irene Arnold-Ammer, Eva Laurell, Alison J. Barker, António M. Fernandes, Karin Finger‐Baier, Alessandro Filosa, Thomas O. Helmbrecht, Yvonne Kölsch, Enrico Kühn, Estuardo Robles, Krasimir Slanchev, Tod R. Thiele, Herwig Baier, Fumi Kubo
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-10339-5

The PDK1 Inhibitor Dichloroacetate Controls Cholesterol Homeostasis Through the ERK5/MEF2 Pathway
Cited by: 23
Author(s): Asaad Khan, Nerea Allende-Vega, Delphine Gitenay, Sabine Gerbal‐Chaloin, Claire Gondeau, Dang Nghiem Vo, Sana Belkahla, Stefania Orecchioni, Giovanna Talarico, Francesco Bertolini, Milica Božić, José M. Valdivielso, Fabienne Bejjani, Isabelle Jariel, Isabel C. López-Mejía, Lluís Fajas, Charles-Henri Lecellier, Javier Hernandez, Martine Daujat, Martín Villalba
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-12532-y

SHH signaling directed by two oral epithelium-specific enhancers controls tooth and oral development
Cited by: 22
Author(s): Tomoko Sagai, Takanori Amano, Akiteru Maeno, Hiroshi Kanazawa, Hye-Jin Seo, Sung Won Cho, Toshihiko Shiroishi
Software Mentions: 1
Published: almost 9 years ago

10.1007/s13205-012-0063-7

Vertebrate patatin-like phospholipase domain-containing protein 4 (PNPLA4) genes and proteins: a gene with a role in retinol metabolism
Cited by: 7
Author(s): Roger S. Holmes
Software Mentions: 1
Published: over 14 years ago

10.1007/s13205-011-0013-9

Genomics and proteomics of vertebrate cholesterol ester lipase (LIPA) and cholesterol 25-hydroxylase (CH25H)
Cited by: 32
Author(s): Roger S. Holmes, John L. VandeBerg, Laura A. Cox
Software Mentions: 1
Published: about 15 years ago

10.1042/AN20130029

Increased Binding of Stroke-Induced Long Non-Coding RNAs to the Transcriptional Corepressors Sin3A and coREST
Cited by: 67
Author(s): Ashutosh Dharap, Courtney Pokrzywa, Raghu Vemuganti
Software Mentions: 1
Published: about 13 years ago

10.1155/2014/259382

Structural Differences Observed in Arboviruses of the Alphavirus and Flavivirus Genera
Cited by: 18
Author(s): Raquel Hernandez, Dennis T. Brown, Angel Paredes
Software Mentions: 1
Published: over 12 years ago

10.18632/aging.101671

A CREB1/miR-433 reciprocal feedback loop modulates proliferation and metastasis in colorectal cancer
Cited by: 31
Author(s): Yan Li, Weiqiang You, Nengquan Sheng, Jianfeng Gong, Landian Hu, Gewen Tan, Hongqi Chen, Zhigang Wang
Software Mentions: 1
Published: almost 8 years ago

10.18632/aging.101470

Integrated DNA methylation and gene expression analysis identifies SLAMF7 as a key regulator of atherosclerosis
Cited by: 13
Author(s): Zhangyong Xia, Minghong Gu, Xiaodong Jia, Xiaoting Wang, Chunxia Wu, Jiangwen Guo, Liyong Zhang, Yifeng Du, Jiyue Wang
Software Mentions: 1
Published: about 8 years ago

10.1111/acel.12607

The PPARγ-SETD8 axis constitutes an epigenetic, p53-independent checkpoint on p21-mediated cellular senescence
Cited by: 21
Author(s): Chieh Tien Shih, Ian Yi‐Feng Chang, Yi Tung Chen, Chung Pei, Hui-Wen Chen, Chang Ching Yang, Juu Chin Lu, Yau Sheng Tsai, Hua Chien Chen, Bertrand Chin‐Ming Tan
Software Mentions: 1
Published: over 9 years ago

10.1186/s13015-019-0158-3

TMRS: an algorithm for computing the time to the most recent substitution event from a multiple alignment column
Cited by: 0
Author(s): Hisanori Kiryu, Yuto Ichikawa, Yasuhiro Kojima
Software Mentions: 1
Published: almost 7 years ago

10.1186/1748-7188-6-2

WordCluster: detecting clusters of DNA words and genomic elements
Cited by: 19
Author(s): Michael Hackenberg, Pedro Carpena, Pedro Bernaola‐Galván, Guillermo Barturen, Ángel M. Alganza, José Luis Tejera Oliver
Software Mentions: 1
Published: over 15 years ago

10.1016/j.ajhg.2018.11.004

GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology
Cited by: 36
Author(s): Jonas Bovijn, Leigh Jackson, Jenny C Censin, Chia‐Yen Chen, Triin Laisk, Samantha Laber, Teresa Ferreira, Sara L. Pulit, Craig A. Glastonbury, Jordan W. Smoller, Jamie Harrison, Katherine S. Ruth, Robin N Beaumont, Samuel E. Jones, Jessica Tyrrell, Andrew R. Wood, Michael N. Weedon, Reedik Mägi, Benjamin M. Neale, Cecilia M. Lindgren, Anna Murray, Michael V. Holmes
Software Mentions: 1
Published: over 7 years ago

10.1152/ajpendo.00580.2012

Decreased expression of the satiety signal receptor CCKAR is responsible for increased growth and body weight during the domestication of chickens
Cited by: 59
Author(s): Ian Dunn, Simone Meddle, Peter W.F. Wilson, Chloe A. Wardle, Andy Law, Valerie Bishop, Camilla Hindar, Gavin Robertson, David W. Burt, Stephanie J. Ellison, David Morrice, Paul Hocking
Software Mentions: 1
Published: over 13 years ago

10.4269/ajtmh.15-0049

Population Genetics, Evolutionary Genomics, and Genome-Wide Studies of Malaria: A View Across the International Centers of Excellence for Malaria Research
Cited by: 13
Author(s): Jane M. Carlton, Sarah K. Volkman, Swapna Uplekar, Daniel Hupalo, João M. P. Alves, Liwang Cui, Martin J. Donnelly, David S. Roos, Omar S. Harb, Mónica Mancero Acosta, Andrew C. Read, Paulo Eduardo Martins Ribolla, O. P. Singh, Neena Valecha, Samuel C. Wassmer, Marcelo U. Ferreira, Ananías A. Escalante
Software Mentions: 1
Published: about 11 years ago

10.1111/andr.12476

The <scp>SET</scp> protein promotes androgen production in testicular Leydig cells
Cited by: 5
Author(s): B. Zhang, Wei Ma, Qun Zhu, Wei Xu, Lingling Gao, Boqun Xu, Shunqing Xu, Chunfang Gao, J. Liu, Yugui Cui
Software Mentions: 1
Published: over 8 years ago

10.1007/s10456-017-9542-0

RCAN1.4 regulates VEGFR-2 internalisation, cell polarity and migration in human microvascular endothelial cells
Cited by: 51
Author(s): Ahmad F. Alghanem, Emma L. Wilkinson, Maxine S. Emmett, Mohammad Aljasir, Katherine Holmes, Beverley A. Rothermel, Victoria A. Simms, Victoria L. Heath, Michael Cross
Software Mentions: 1
Published: over 9 years ago

10.1093/aobpla/plt011

Microscopic elucidation of abundant endophytic bacteria colonizing the cell wall–plasma membrane peri-space in the shoot-tip tissue of banana
Cited by: 56
Author(s): Pious Thomas, K. Madhavi Reddy
Software Mentions: 1
Published: over 13 years ago

10.1186/ar3515

Interleukin-1, tumor necrosis factor-alpha, and transforming growth factor-beta 1 and integrative meniscal repair: influences on meniscal cell proliferation and migration
Cited by: 52
Author(s): Katherine M. Riera, Nicole E. Rothfusz, Rebecca E. Wilusz, J. Brice Weinberg, Farshid Guilak, Amy L. McNulty
Software Mentions: 1
Published: over 15 years ago

10.1186/ar1700

Cited by: 3
Author(s): Lars Andersson, Greta Petersen, Per Johnson, Fredrik Ståhl
Software Mentions: 1
Published: over 21 years ago

10.1186/1471-2105-15-S1-S8

AnnotateGenomicRegions: a web application
Cited by: 8
Author(s): Luca Zammataro, Rita DeMolfetta, Gabriele Bucci, Arnaud Céol, Heiko Mul̈ler
Software Mentions: 1
Published: over 12 years ago

10.1186/s12859-018-2247-6

CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata
Cited by: 9
Author(s): Syed Ahmad Chan Bukhari, Marcos Martínez-Romero, Martin J. O’ Connor, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Kei‐Hoi Cheung, Steven H. Kleinstein
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2105-7-S5-S4

Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus
Cited by: 35
Author(s): Mohammad Asif Khan, A. T. Heiny, Kenneth X. Lee, Kellathur N. Srinivasan, Tin Wee Tan, J. Thomas August, Vladimir Brusic
Software Mentions: 1
Published: almost 20 years ago

10.1186/1471-2105-10-59

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation
Cited by: 32
Author(s): Sandra N. Loevenich, Erich Brunner, Nichole L. King, Eric W. Deutsch, Stephen E. Stein, Ruedi Aebersold, Ernst Hafen
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2105-14-167

Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline
Cited by: 2
Author(s): Alireza Hadj Khodabakhshi, Anthony P. Fejes, İnanç Birol, Steven J.M. Jones
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2105-10-S15-S3

Gevab: a prototype genome variation analysis browsing server
Cited by: 2
Author(s): Woo-Yeon Kim, Sang Yoon Kim, TaeHyung Kim, Sung‐Min Ahn, Ha Na Byun, Deokhoon Kim, Dae-Soo Kim, Yong Seok Lee, Ho Ghang, Daeui Park, Byoung-Chul Kim, Chulhong Kim, Sung-Hoon Lee, Seong‐Jin Kim, Jong Bhak
Software Mentions: 1
Published: almost 17 years ago

10.1186/s12859-017-1846-y

RiceMetaSys for salt and drought stress responsive genes in rice: a web interface for crop improvement
Cited by: 26
Author(s): Maninder Sandhu, V. Sureshkumar, Chandra Prakash, Rekha Dixit, Amolkumar U. Solanke, Tilak Raj Sharma, Trilochan Mohapatra, S. V. Amitha Mithra
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2105-11-S1-S14

Prediction of novel miRNAs and associated target genes in Glycine max
Cited by: 106
Author(s): Trupti Joshi, Zhe Yan, Marc Libault, Dong‐Hoon Jeong, Sunhee Park, Pamela J. Green, D. Janine Sherrier, Andrew Farmer, Greg May, Blake C. Meyers, Dong Xu, Gary Stacey
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2105-14-S17-A17

FPD2GB2: Automating a transition from a customized genome browser to GBrowse2
Cited by: 1
Author(s): Roger G. Chui, Jerzy W. Jaromczyk, Neil Moore, Christopher L. Schardl
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2105-13-S3-S6

Detection of gene expression changes at chromosomal rearrangement breakpoints in evolution
Cited by: 8
Author(s): Adriana Muñoz, David Sankoff
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2105-11-29

miRMaid: a unified programming interface for microRNA data resources
Cited by: 17
Author(s): Anders Jacobsen, Anders Krogh, Sakari Kauppinen, Morten Lindow
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2105-14-289

Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data
Cited by: 197
Author(s): Thorfinn Sand Korneliussen, Ida Moltke, Anders Albrechtsen, Rasmus Nielsen
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2105-13-187

ParsEval: parallel comparison and analysis of gene structure annotations
Cited by: 24
Author(s): Daniel Standage, Volker Brendel
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2105-6-S1-S17

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA
Cited by: 153
Author(s): Evelyn Camon, Daniel Barrell, Emily Dimmer, Vivian Lee, Michele Magrane, John Maslen, David Binns, Rolf Apweiler
Software Mentions: 1
Published: over 21 years ago

10.1186/1471-2105-9-549

nGASP – the nematode genome annotation assessment project
Cited by: 65
Author(s): Avril Coghlan, Tristan J. Fiedler, Sheldon McKay, Paul Flicek, Todd W. Harris, Darin Blasiar, Lincoln Stein
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2105-11-238

A database and API for variation, dense genotyping and resequencing data
Cited by: 37
Author(s): Daniel Ríos, William McLaren, Yuan Chen, Ewan Birney, Arne Stabenau, Paul Flicek, Fiona Cunningham
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2105-9-S8-S3

Integrating biological data – the Distributed Annotation System
Cited by: 82
Author(s): Andy Jenkinson, Mario Albrecht, Ewan Birney, Hagen Blankenburg, Thomas A. Down, Alex Bateman, Henning Hermjakob, Tim Hubbard, Rafael C. Jiménez, Philip Jones, Andreas Kähäri, Eugene Kulesha, José Ramón Macías, Gabrielle A. Reeves, Andreas Prlić
Software Mentions: 1
Published: about 18 years ago

10.1186/s12859-021-04090-y

Low-level variant calling for non-matched samples using a position-based and nucleotide-specific approach
Cited by: 0
Author(s): Jeffrey N. Dudley, Celine Hong, Marwan A. Hawari, Jasmine Shwetar, Julie C. Sapp, Justin Lack, Henoke Shiferaw, Jennifer J. Johnston, Leslie G. Biesecker
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-16-S13-S1

Proceedings of the 2015 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference
Cited by: 0
Author(s): Jonathan D. Wren, Shraddha Thakkar, Ramin Homayouni, Donald J. Johann, Mikhail G. Dozmorov
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12859-015-0673-2

GESPA: classifying nsSNPs to predict disease association
Cited by: 6
Author(s): Jay K. Khurana, Jay E. Reeder, Antony E. Shrimpton, Juilee Thakar
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2105-9-145

ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts
Cited by: 8
Author(s): Kwangmin Choi, Sun Kim
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2105-7-25

Analysis and visualization of chromosomal abnormalities in SNP data with SNPscan
Cited by: 38
Author(s): Jason C. Ting, Ying Ye, George H. Thomas, Ingo Ruczinski, Jonathan Pevsner
Software Mentions: 1
Published: over 20 years ago

10.1186/1471-2105-11-516

QTLminer: identifying genes regulating quantitative traits
Cited by: 24
Author(s): Rudi Alberts, Klaus Schughart
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2105-8-19

Statistical significance of cis-regulatory modules
Cited by: 70
Author(s): Dustin E. Schones, Andrew D. Smith, Michael Q. Zhang
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2105-8-94

Non-coding sequence retrieval system for comparative genomic analysis of gene regulatory elements
Cited by: 13
Author(s): Sung Tae Doh, Yunyu Zhang, Matthew H Temple, Li Cai
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2105-9-S12-S19

An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases
Cited by: 13
Author(s): Jin Yang, Shin Hwang, Jeongsu Oh, Jong Bhak, Tae-Kwon Sohn
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12915-015-0147-z

Nuclear myosin 1 contributes to a chromatin landscape compatible with RNA polymerase II transcription activation
Cited by: 46
Author(s): Bader Almuzzaini, Aishe A. Sarshad, Ann Kristin Östlund Farrants, Piergiorgio Percipalle
Software Mentions: 1
Published: over 11 years ago

10.1186/1741-7007-11-90

Transcription of a protein-coding gene on B chromosomes of the Siberian roe deer (Capreolus pygargus)
Cited by: 55
Author(s): Vladimir A. Trifonov, Polina Dementyeva, Denis M. Larkin, Patrícia C. M. O’Brien, Polina L. Perelman, Fengtang Yang, Malcolm A. Ferguson‐Smith, Alexander S. Graphodatsky
Software Mentions: 1
Published: about 13 years ago

10.1186/1741-7007-8-149

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA
Cited by: 246
Author(s): Philipp Kapranov, Georges St. Laurent, Tal Raz, Fatih Ozsolak, C. Patrick Reynolds, Poul H. Sorensen, Gregory H. Reaman, Patrice M. Milos, Robert J. Arceci, John F. Thompson, Timothy J. Triche
Software Mentions: 1
Published: almost 16 years ago

10.1186/1741-7007-11-24

Copy-number variation of cancer-gene orthologs is sufficient to induce cancer-like symptoms in Saccharomyces cerevisiae
Cited by: 17
Author(s): Michaela de Clare, Stephen G. Oliver
Software Mentions: 1
Published: over 13 years ago

10.1186/s12915-016-0320-z

Coordinated inhibition of C/EBP by Tribbles in multiple tissues is essential for Caenorhabditis elegans development
Cited by: 30
Author(s): Kyung Won Kim, Nishant Thakur, Christopher A. Piggott, Shizue Omi, Jolanta Polanowska, Yishi Jin, Nathalie Pujol
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12885-018-5050-x

TRPM7 overexpression enhances the cancer stem cell-like and metastatic phenotypes of lung cancer through modulation of the Hsp90α/uPA/MMP2 signaling pathway
Cited by: 34
Author(s): Kai Li, Shaohua Xu, Zhao Chun-hua, Qingxin Zeng, Zhijun Li, Zhoumiao Chen
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12885-021-08332-3

Prognostic and clinicopathological insights of phosphodiesterase 9A gene as novel biomarker in human colorectal cancer
Cited by: 10
Author(s): Tasmina Ferdous Susmi, Atikur Rahman, Md. Moshiur Rahman Khan, Farzana Yasmin, Md. Shariful Islam, Omaima Nasif, Sulaiman Ali Alharbi, Gaber El‐Saber Batiha, Mohammad Uzzal Hossain
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2407-10-40

Orphan receptor GPR110, an oncogene overexpressed in lung and prostate cancer
Cited by: 63
Author(s): Amy Lum, Bruce B. Wang, Gabriele Beck-Engeser, Lauri Li, Namitha Channa, Matthias Wabl
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2407-9-198

A novel method, digital genome scanning detects KRAS gene amplification in gastric cancers: involvement of overexpressed wild-type KRAS in downstream signaling and cancer cell growth
Cited by: 52
Author(s): Hiroaki Mitsuya, Minoru Toyota, Fugaku Aoki, Hirofumi Akashi, Reo Maruyama, Yasushi Sasaki, Hiromu Suzuki, Masashi Idogawa, Lisa Kashima, Kazuyoshi Yanagihara, Masahiro Fujita, Masao Hosokawa, Masanobu Kusano, Sorin V. Sabau, Haruyuki Tatsumi, Kohzoh Imai, Yasuhisa Shinomura, Takashi Tokino
Software Mentions: 1
Published: about 17 years ago

10.1186/s12906-018-2396-1

Topical anti-inflammatory and anti-oxidative effects of porcine placenta extracts on 2,4-dinitrochlorobenzene-induced contact dermatitis
Cited by: 15
Author(s): Jae-Hyeok Heo, Yoonki Heo, Hee Jung Lee, Min-Jee Kim, Ha Youn Shin
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12906-021-03310-5

Echinacea purpurea (L.) Moench treatment of monocytes promotes tonic interferon signaling, increased innate immunity gene expression and DNA repeat hypermethylated silencing of endogenous retroviral sequences
Cited by: 5
Author(s): Ken Declerck, Claudina Pérez Novo, Lisa Grielens, Guy Van Camp, Andy Suter, Wim Vanden Berghe
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-213X-11-63

Conserved and non-conserved enhancers direct tissue specific transcription in ancient germ layer specific developmental control genes
Cited by: 25
Author(s): Satadal Chatterjee, Guillaume Bourque, Thomas Lufkin
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-213X-13-18

Expression of phosphatase of regenerating liver family genes during embryogenesis: an evolutionary developmental analysis among Drosophila, amphioxus, and zebrafish
Cited by: 22
Author(s): Ming‐Der Lin, Hsun-Tzu Lee, Szu-Chieh Wang, Han-Ru Li, Hsin-Lun Hsien, Kai-Wen Cheng, Yu-Di Chang, Min-Lang Huang, Jr-Kai Yu, Yau‐Hung Chen
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-213X-9-11

Trichostatin A treatment of cloned mouse embryos improves constitutive heterochromatin remodeling as well as developmental potential to term
Cited by: 79
Author(s): Walid E. Maalouf, Zichuan Liu, Vincent Brochard, Jean‐Paul Renard, Pascale Debey, Nathalie Beaujean, Daniele Zink
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-213X-8-46

Axon-bearing and axon-less horizontal cell subtypes are generated consecutively during chick retinal development from progenitors that are sensitive to follistatin
Cited by: 35
Author(s): Per-Henrík Edqvist, Madelen Lek, Henrik Boije, Sarah M Lindbäck, Finn Hallböök
Software Mentions: 1
Published: over 18 years ago

10.1186/s12861-016-0119-8

Expression and knockdown of zebrafish folliculin suggests requirement for embryonic brain morphogenesis
Cited by: 3
Author(s): Emma J. Kenyon, Monique Luijten, Harmeet Gill, Nan Li, Matthew Rawlings, James C. Bull, Yavor Hadzhiev, M.A.M. van Steensel, Eamonn R. Maher, Ferenc Müller
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2148-9-217

BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC
Cited by: 26
Author(s): Rahul Satija, Adam M. Novak, István Miklós, Rune B. Lyngsø, Jotun Hein
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2148-12-62

Genomic characterization of the European sea bass Dicentrarchus labrax reveals the presence of a novel uncoupling protein (UCP) gene family member in the teleost fish lineage
Cited by: 11
Author(s): Mbaye Tine, Heiner Kuhl, Martin Jastroch, Richard Reinhardt
Software Mentions: 1
Published: over 14 years ago

10.1186/s12862-018-1147-8

Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa
Cited by: 16
Author(s): Alyssa D. Lokits, Henrike Indrischek, Jens Meiler, Heidi E. Hamm, Peter F. Stadler
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2148-8-46

Rapid bursts of androgen-binding protein (Abp) gene duplication occurred independently in diverse mammals
Cited by: 42
Author(s): Christina M. Laukaitis, Andreas Heger, Tyler D Blakley, Pavel Munclinger, Chris P. Ponting, Robert C. Karn
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2148-14-11

Evolutionary classification of ammonium, nitrate, and peptide transporters in land plants
Cited by: 107
Author(s): Neil J J B von Wittgenstein, Cuong H. Le, Barbara J. Hawkins, Jürgen Ehlting
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2148-7-S1-S14

Comparative analysis of genome tiling array data reveals many novel primate-specific functional RNAs in human
Cited by: 20
Author(s): Zhaolei Zhang, Andy Wing Chun Pang, Mark Gerstein
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2148-13-238

The vertebrate ancestral repertoire of visual opsins, transducin alpha subunits and oxytocin/vasopressin receptors was established by duplication of their shared genomic region in the two rounds of early vertebrate genome duplications
Cited by: 103
Author(s): David Lagman, Daniel Ocampo Daza, Jenny Widmark, Xesús M. Abalo, Görel Sundström, Dan Larhammar
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2148-14-74

An evolutionarily biased distribution of miRNA sites toward regulatory genes with high promoter-driven intrinsic transcriptional noise
Cited by: 18
Author(s): Hossein Zare, Arkady B. Khodursky, Vittorio Sartorelli
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2148-8-17

A genome-wide screen for noncoding elements important in primate evolution
Cited by: 91
Author(s): Eliot C. Bush, Bruce T. Lahn
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2148-9-195

A fungal phylogeny based on 82 complete genomes using the composition vector method
Cited by: 185
Author(s): Hao Wang, Zhonghui Xu, Lei Gao, Bailin Hao
Software Mentions: 1
Published: about 17 years ago

10.1186/1471-2148-10-157

Functional conservation of a forebrain enhancer from the elephant shark (Callorhinchus milii) in zebrafish and mice
Cited by: 11
Author(s): R. Macdonald, Mélanie Debiais-Thibaud, Kyle J. Martin, Luc Poitras, Boon-Hui Tay, Byrappa Venkatesh, Marc Ekker
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2148-10-73

A non-tree-based comprehensive study of metazoan Hox and ParaHox genes prompts new insights into their origin and evolution
Cited by: 26
Author(s): Morgane Thomas‐Chollier, Valérie Ledent, Luc Leyns, Michel Vervoort
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2148-14-137

The dynamic proliferation of CanSINEs mirrors the complex evolution of Feliforms
Cited by: 6
Author(s): Kathryn B. Walters-Conte, Diana Johnson, Warren E. Johnson, Stephen J. O’Brien, Jill Pecon-Slattery
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2148-11-308

Abundance of ultramicro inversions within local alignments between human and chimpanzee genomes
Cited by: 11
Author(s): Yuichiro Hara, Tadashi Imanishi
Software Mentions: 1
Published: over 15 years ago

10.1186/s12862-015-0528-5

Selective sweeps versus introgression - population genetic dynamics of the murine leukemia virus receptor Xpr1 in wild populations of the house mouse (Mus musculus)
Cited by: 9
Author(s): Natascha Hasenkamp, Terry Solomon, Diethard Tautz
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2148-13-19

Impact of constitutional copy number variants on biological pathway evolution
Cited by: 14
Author(s): Maria Poptsova, Samprit Banerjee, Ömer Gökçümen, Mark A. Rubin, Francesca Demichelis
Software Mentions: 1
Published: over 13 years ago

10.1186/s12862-020-01624-5

The amylase gene cluster in house mice (Mus musculus) was subject to repeated introgression including the rescue of a pseudogene
Cited by: 2
Author(s): Miriam Linnenbrink, Kristian K. Ullrich, Ellen McConnell, Diethard Tautz
Software Mentions: 1
Published: over 6 years ago

10.1186/s12862-015-0437-7

Evolution of the unspliced transcriptome
Cited by: 7
Author(s): Jan Engelhardt, Peter F. Stadler
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2148-5-22

Cited by: 21
Author(s): Michael E. Bradley, Steven A. Benner
Software Mentions: 1
Published: over 21 years ago

10.1186/1471-2148-12-231

The evolution of vertebrate somatostatin receptors and their gene regions involves extensive chromosomal rearrangements
Cited by: 34
Author(s): Daniel Ocampo Daza, Görel Sundström, Christina Bergqvist, Dan Larhammar
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2156-8-78

SERpredict: Detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements
Cited by: 34
Author(s): Britta Mersch, Noa Sela, Gil Ast, Sándor Suhai, Agnes Hotz‐Wagenblatt
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2156-9-6

A hierarchical and modular approach to the discovery of robust associations in genome-wide association studies from pooled DNA samples
Cited by: 24
Author(s): Paola Sebastiani, Zhenming Zhao, María M. Abad‐Grau, Alberto Riva, Stephen W. Hartley, Amanda Sedgewick, Alessandro Doria, Monty Montano, Efthymia Melista, Dellara F. Terry, Thomas T. Perls, Martin H. Steinberg, Clinton T. Baldwin
Software Mentions: 1
Published: over 18 years ago

10.1186/s12863-020-00913-8

Molecular basis of a new ovine model for human 3M syndrome-2
Cited by: 3
Author(s): Shernae A. Woolley, Steven Hayes, M. R. Shariflou, F. W. Nicholas, Cali E. Willet, Brendon A. O’Rourke, Imke Tammen
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12863-020-00868-w

Identification and genetic analysis of qCL1.2, a novel allele of the “green revolution” gene SD1 from wild rice (Oryza rufipogon) that enhances plant height
Cited by: 14
Author(s): Lizhen Zhang, Jingfen Huang, Yanyan Wang, Rui Xu, Ziyi Yang, Zhigang Zhao, Shijia Liu, Yunlu Tian, Xiaoming Zheng, Fĕi Li, Junrui Wang, Yue Song, Jiaqi Li, Yongxia Cui, Lifang Zhang, Yunlian Cheng, Jinhao Lan, Weihua Qiao, Qing Yang
Software Mentions: 1
Published: about 6 years ago

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Papers Mentioning browser 2,125