pypi: browser | Projects | Ecosyste.ms: Papers

10.1016/j.ajhg.2018.11.004

GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology
Cited by: 36
Author(s): Jonas Bovijn, Leigh Jackson, Jenny C Censin, Chia‐Yen Chen, Triin Laisk, Samantha Laber, Teresa Ferreira, Sara L. Pulit, Craig A. Glastonbury, Jordan W. Smoller, Jamie Harrison, Katherine S. Ruth, Robin N Beaumont, Samuel E. Jones, Jessica Tyrrell, Andrew R. Wood, Michael N. Weedon, Reedik Mägi, Benjamin M. Neale, Cecilia M. Lindgren, Anna Murray, Michael V. Holmes
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0066799

Role of Helicase-Like Transcription Factor (Hltf) in the G2/M Transition and Apoptosis in Brain
Cited by: 24
Author(s): Rebecca A. Helmer, Oded Foreman, Janet Dertien, Marlyn Panchoo, Suhani M. Bhakta, Beverly S. Chilton
Software Mentions: 1
Published: over 13 years ago

10.1186/s40101-018-0169-7

Association of EGLN1 genetic polymorphisms with SpO2 responses to acute hypobaric hypoxia in a Japanese cohort
Cited by: 13
Author(s): Yoshiki Yasukochi, Takayuki Nishimura, Midori Motoi, Shigeki Watanuki
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms21186808

High-Temperature-Responsive Poplar lncRNAs Modulate Target Gene Expression via RNA Interference and Act as RNA Scaffolds to Enhance Heat Tolerance
Cited by: 10
Author(s): Yuepeng Song, Panfei Chen, Peng Liu, Chenhao Bu, Deqiang Zhang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0140436

Two Independent Mutations in ADAMTS17 Are Associated with Primary Open Angle Glaucoma in the Basset Hound and Basset Fauve de Bretagne Breeds of Dog
Cited by: 30
Author(s): James A. C. Oliver, Oliver P. Forman, Louise Pettitt, Cathryn S. Mellersh
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0121672

Characterization of the Avian Trojan Gene Family Reveals Contrasting Evolutionary Constraints
Cited by: 3
Author(s): Petar Petrov, Riikka Syrjänen, Jacqueline Smith, Maria Weronika Gutowska, Toshihiro Uchida, Olli Vainio, David W. Burt
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-12-71

Characterization of the past and current duplication activities in the human 22q11.2 region
Cited by: 26
Author(s): Xingyi Guo, Laina Freyer, Bernice E. Morrow, Deyou Zheng
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-9-529

Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays
Cited by: 67
Author(s): Amandine Bemmo, David Benovoy, Tony Kwan, Daniel J. Gaffney, Roderick V. Jensen, Jacek Majewski
Software Mentions: 1
Published: about 18 years ago

10.1186/1748-7188-6-2

WordCluster: detecting clusters of DNA words and genomic elements
Cited by: 19
Author(s): Michael Hackenberg, Pedro Carpena, Pedro Bernaola‐Galván, Guillermo Barturen, Ángel M. Alganza, José Luis Tejera Oliver
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0019091

The Genetic Effect of Copy Number Variations on the Risk of Type 2 Diabetes in a Korean Population
Cited by: 20
Author(s): Joon Seol Bae, Hyun Sub Cheong, Ji Eun Kim, Byung Lae Park, Jeonghyun Kim, Tae Joon Park, Jason Yongha Kim, Charisse Flerida A. Pasaje, Jin Sol Lee, Yun-Ju Park, Miey Park, Chan Park, Insong Koh, Yeun‐Jun Chung, Jong‐Young Lee, Hyoung Doo Shin
Software Mentions: 1
Published: over 15 years ago

10.1186/s12864-018-5311-8

Characterization of the Esi3/RCI2/PMP3 gene family in the Triticeae
Cited by: 11
Author(s): Sabrina C Brunetti, Michelle K.M. Arseneault, Patrick J. Gulick
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0008978

Expression of Cartilage Developmental Genes in Hoxc8- and Hoxd4-Transgenic Mice
Cited by: 27
Author(s): Claudia Krüger, Claudia Kappen
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0150639

Initiation of cyp26a1 Expression in the Zebrafish Anterior Neural Plate by a Novel Cis-Acting Element
Cited by: 1
Author(s): Chunhong Chen, Aline Stedman, Emmanuelle Havis, Isabelle Anselme, Daria Onichtchouk, François Giudicelli, Sylvie Schneider‐Maunoury
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-11-565

Expression proteomics of UPF1 knockdown in HeLa cells reveals autoregulation of hnRNP A2/B1 mediated by alternative splicing resulting in nonsense-mediated mRNA decay
Cited by: 70
Author(s): Nicholas J. McGlincy, Lit-Yeen Tan, Nicodème Paul, Mihaela Zavolan, Kathryn S. Lilley, Christopher W. Smith
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0139656

Prioritizing Clinically Relevant Copy Number Variation from Genetic Interactions and Gene Function Data
Cited by: 8
Author(s): Justin Foong, Marta Gı̂rdea, James Stavropoulos, Michael Brudno
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0094306

The Association of Myosin IB with Actin Waves in Dictyostelium Requires Both the Plasma Membrane-Binding Site and Actin-Binding Region in the Myosin Tail
Cited by: 27
Author(s): Hanna Brzeska, Kevin J. Pridham, Godefroy Chery, Margaret A. Titus, Edward D. Korn
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0238467

Evaluation of molecular inversion probe versus TruSeq® custom methods for targeted next-generation sequencing
Cited by: 16
Author(s): Rowida Almomani, Margherita Marchi, Maurice Sopacua, Patrick Lindsey, Erika Salvi, Bart de Koning, Silvia Santoro, Stefania Magri, Hubert J.M. Smeets, Filippo Martinelli Boneschi, Rayaz A. Malik, Dan Ziegler, Janneke G. J. Hoeijmakers, Gidon J. Bönhof, Sulayman D. Dib‐Hajj, Stephen G. Waxman, Ingemar S.J. Merkies, Giuseppe Lauria, Catharina G. Faber, Monique M. Gerrits
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0056379

Identity-by-Descent Mapping to Detect Rare Variants Conferring Susceptibility to Multiple Sclerosis
Cited by: 17
Author(s): Rui Lin, Jac Charlesworth, Jim Stankovich, Victoria M. Perreau, Matthew A. Brown, Bruce Taylor
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0136866

A Gβ protein and the TupA Co-Regulator Bind to Protein Kinase A Tpk2 to Act as Antagonistic Molecular Switches of Fungal Morphological Changes
Cited by: 1
Author(s): Thamarai K. Janganan, Gongyou Chen, Daliang Chen, João F. Menino, Fernando Rodrigues, M. Inês Borges-Walmsley, Adrian R. Walmsley
Software Mentions: 1
Published: about 11 years ago

10.1186/s12864-016-3173-5

Co-activator candidate interactions for orphan nuclear receptor NR2E1
Cited by: 10
Author(s): Ximena Corso-Díaz, Charles N. de Leeuw, Vivian Alonso, Diana Melchers, Bibiana K. Y. Wong, René Houtman, Elizabeth M. Simpson
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms21228486

A SINE-VNTR-Alu in the LRIG2 Promoter Is Associated with Gene Expression at the Locus
Cited by: 5
Author(s): Ashley Hall, Anni Moore, Dena G. Hernandez, Kimberley Billingsley, Vivien J. Bubb, John P. Quinn
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0113829

A Mutation in cnot8, Component of the Ccr4-Not Complex Regulating Transcript Stability, Affects Expression Levels of Developmental Regulators and Reveals a Role of Fgf3 in Development of Caudal Hypothalamic Dopaminergic Neurons
Cited by: 14
Author(s): Peter J. Koch, Heiko Löhr, Wolfgang Driever
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0112984

Function-Triggering Antibodies to the Adhesion Molecule L1 Enhance Recovery after Injury of the Adult Mouse Femoral Nerve
Cited by: 10
Author(s): Daria Guseva, Gabriele Loers, Melitta Schachner
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0032958

The Role of Inflammatory Pathway Genetic Variation on Maternal Metabolic Phenotypes during Pregnancy
Cited by: 20
Author(s): Margrit Urbanek, M. Geoffrey Hayes, Hoon Lee, Rachel M. Freathy, Lynn P. Lowe, Christine M. Ackerman, Nadereh Jafari, Alan R. Dyer, Nancy J. Cox, David B. Dunger, Andrew T. Hattersley, Boyd E. Metzger, William L. Lowe
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0079922

DNA Sequences at a Glance
Cited by: 13
Author(s): Armando J. Pinho, Sara P. Garcia, Diogo Pratas, Paulo J. S. G. Ferreira
Software Mentions: 1
Published: almost 13 years ago

10.1098/rsob.120054

Transcriptome sequencing of black grouse ( <i>Tetrao tetrix</i> ) for immune gene discovery and microsatellite development
Cited by: 26
Author(s): Biao Wang, Robert Ekblom, Todd A. Castoe, Eleanor P. Jones, Radoslav Kozma, Erik Bongcam‐Rudloff, David D. Pollock, Jacob Höglund
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0002896

Evolutionary Origins and Functions of the Carotenoid Biosynthetic Pathway in Marine Diatoms
Cited by: 125
Author(s): Sacha Coesel, Miroslav Oborník, João Varela, Angela Falciatore, Chris Bowler
Software Mentions: 1
Published: over 18 years ago

10.1186/s12986-021-00600-0

Modulation and bioinformatics screening of hepatic mRNA-lncRNAs (HML) network associated with insulin resistance in prediabetic and exercised mice
Cited by: 6
Author(s): Fatemeh Kazeminasab, Seyed Mohammad Marandi, Maryam Baharlooie, Mohammad Hossein Nasr-Esfahani, Kamran Ghaedi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0077700

Combining Different mRNA Capture Methods to Analyze the Transcriptome: Analysis of the Xenopus laevis Transcriptome
Cited by: 24
Author(s): Michael D. Blower, Ashwini Jambhekar, Dianne S. Schwarz, James A. Toombs
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0061920

Ultra-Rare Mutation in Long-Range Enhancer Predisposes to Thyroid Carcinoma with High Penetrance
Cited by: 32
Author(s): Hao He, Wei Li, Dayong Wu, Rebecca Nagy, Sandya Liyanarachchi, Keiko Akagi, Jarosław Jendrzejewski, Hong Jiao, Kevin W. Hoag, Bernard Wen, Mukund Srinivas, Gavisha Waidyaratne, Rui Wang, Anna Wójcicka, Ilene Lattimer, Elżbieta Stachlewska, Małgorzata Czetwertyńska, Joanna Długosińska, Wojciech Gierlikowski, Rafał Płoski, Marek Krawczyk, Krystian Jażdżewski, Juha Kere, David E. Symer, Victor X. Jin, Qianben Wang, Albert de la Chapelle
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0212266

Genomic structure of a crossbred Landrace pig population
Cited by: 11
Author(s): Letícia Borges Joaquim, T.C.S. Chud, Jorge Augusto Petroli Marchesi, Rodrigo Pelicioni Savegnago, Marcos Eli Buzanskas, Ricardo Zanella, Mauricio Egídio Cantão, J. O. Peixoto, Mônica Corrêa Ledur, Renato Irgang, Danísio Prado Munari
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms22020911

Congenital Diseases of DNA Replication: Clinical Phenotypes and Molecular Mechanisms
Cited by: 19
Author(s): Megan Schmit, Anja‐Katrin Bielinsky
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22052599

CFTR Cooperative Cis-Regulatory Elements in Intestinal Cells
Cited by: 3
Author(s): Mégane Collobert, Ozvan Bocher, Anaïs Le Nabec, Emmanuelle Génin, Claude Férec, Stéphanie Moisan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0026477

Golgi Apparatus-Localized Synaptotagmin 2 Is Required for Unconventional Secretion in Arabidopsis
Cited by: 50
Author(s): Haiyan Zhang, Liang Zhang, Bin Gao, Fan Hai, Jingbo Jin, Miguel A. Botella, Liwen Jiang, Jinxing Lin
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0103967

Visualizing Late Insect Embryogenesis: Extraembryonic and Mesodermal Enhancer Trap Expression in the Beetle Tribolium castaneum
Cited by: 16
Author(s): Stefan Koelzer, Yvonne Kölsch, Kristen A. Panfilio
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0053767

t(8;9)(p22;p24)/PCM1-JAK2 Activates SOCS2 and SOCS3 via STAT5
Cited by: 40
Author(s): Stefan Ehrentraut, Stefan Nagel, Michaela Scherr, Björn Schneider, Hilmar Quentmeier, Robert Geffers, Maren Kaufmann, Corinna Meyer, Monika Prochorec‐Sobieszek, Rhett P. Ketterling, Ryan A. Knudson, Andrew L. Feldman, Marshall E. Kadin, Hans G. Drexler, Roderick A.F. MacLeod
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-13-713

Differences in enhancer activity in mouse and zebrafish reporter assays are often associated with changes in gene expression
Cited by: 18
Author(s): Ana Ariza-Cosano, Axel Visel, Len A. Pennacchio, Hunter B. Fraser, José Luis Gómez-Skármeta, Manuel Irimia, José Bessa
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0024480

Late Replicating Domains Are Highly Recombining in Females but Have Low Male Recombination Rates: Implications for Isochore Evolution
Cited by: 5
Author(s): Catherine Pink, Laurence D. Hurst
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0000702

Mammalian Comparative Sequence Analysis of the Agrp Locus
Cited by: 5
Author(s): Christopher B. Kaelin, Gregory M. Cooper, Arend Sidow, Gregory S. Barsh
Software Mentions: 1
Published: over 19 years ago

10.1186/s13015-019-0158-3

TMRS: an algorithm for computing the time to the most recent substitution event from a multiple alignment column
Cited by: 0
Author(s): Hisanori Kiryu, Yuto Ichikawa, Yasuhiro Kojima
Software Mentions: 1
Published: almost 7 years ago

10.1111/acel.12607

The PPARγ-SETD8 axis constitutes an epigenetic, p53-independent checkpoint on p21-mediated cellular senescence
Cited by: 21
Author(s): Chieh Tien Shih, Ian Yi‐Feng Chang, Yi Tung Chen, Chung Pei, Hui-Wen Chen, Chang Ching Yang, Juu Chin Lu, Yau Sheng Tsai, Hua Chien Chen, Bertrand Chin‐Ming Tan
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0011595

Telomeric NAP1L4 and OSBPL5 of the KCNQ1 Cluster, and the DECORIN Gene Are Not Imprinted in Human Trophoblast Stem Cells
Cited by: 13
Author(s): Jennifer M. Frost, Ramya Udayashankar, H. D. M. Moore, Gudrun E. Moore
Software Mentions: 1
Published: over 16 years ago

10.3390/ijms22136959

Extracellular Vesicles (Secretomes) from Human Trophoblasts Promote the Regeneration of Skin Fibroblasts
Cited by: 9
Author(s): Yoon Young Go, Chan Mi Lee, Won Min Ju, Soo-Cheon Chae, Jae‐Jun Song
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-11-580

ProFITS of maize: a database of protein families involved in the transduction of signalling in the maize genome
Cited by: 8
Author(s): Yi Ling, Zhou Du, Zhenhai Zhang, Zhen Su
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0015246

Microarray-Based Maps of Copy-Number Variant Regions in European and Sub-Saharan Populations
Cited by: 22
Author(s): Christian Vogler, Leo Gschwind, Benno Röthlisberger, Andreas Huber, Isabel Filges, Peter Miny, Bianca Auschra, Attila Steták, Philippe Demougin, Vanja Vukojević, Iris‐Tatjana Kolassa, Thomas Elbert, Dominique J.‐F. de Quervain, Andreas Papassotiropoulos
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0036337

Alternative Splicing of Spg7, a Gene Involved in Hereditary Spastic Paraplegia, Encodes a Variant of Paraplegin Targeted to the Endoplasmic Reticulum
Cited by: 8
Author(s): Giuseppe Mancuso, Esther Barth, Pietro Crivello, Elena I. Rugarli
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0152834

Association of MicroRNA-196a2 Variant with Response to Short-Acting β2-Agonist in COPD: An Egyptian Pilot Study
Cited by: 31
Author(s): Manal S. Fawzy, Mohammad Hussein, Eman Z. Abdelaziz, Hussain A. Yamany, Hussein Ismail, Eman A. Toraih
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0058931

A New Genetic Linkage Map of the Zygomycete Fungus Phycomyces blakesleeanus
Cited by: 22
Author(s): Suman Chaudhary, Silvia Polaino, Viplendra P. S. Shakya, Alexander Idnurm
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0005352

Conservation and Variability of West Nile Virus Proteins
Cited by: 24
Author(s): Qi Ying Koo, Mohammad Asif Khan, Keunok Jung, Shweta Ramdas, Olivo Miotto, Tin Wee Tan, Vladimir Brusic, Jérôme Salmon, J. Thomas August
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pone.0077492

Integrated Analysis of Dysregulated lncRNA Expression in Fetal Cardiac Tissues with Ventricular Septal Defect
Cited by: 35
Author(s): Guixian Song, Yahui Shen, Jingai Zhu, Hailang Liu, Ming Liu, Yuechun Shen, Shasha Zhu, Xiangqing Kong, Zhangbin Yu, Lei Qian
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0038907

Characterization of Novel Paternal ncRNAs at the Plagl1 Locus, Including Hymai, Predicted to Interact with Regulators of Active Chromatin
Cited by: 21
Author(s): Isabel Iglesias-Platas, Alex Martín‐Trujillo, Davide Cirillo, Franck Court, Amy Guillaumet-Adkins, Cristina Camprubí, Déborah Bourc’his, Kenichiro Hata, Robert Feil, Gian Gaetano Tartaglia, Philippe Arnaud, David Gabriel Monk
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0074159

Human PPP1R26P1 Functions as cis-Repressive Element in Mouse Rb1
Cited by: 4
Author(s): Laura Steenpaß, Deniz Kanber, Michaela Hiber, Karin Buiting, Bernhard Horsthemke, Dietmar Lohmann
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0010907

Characteristics of Transposable Element Exonization within Human and Mouse
Cited by: 64
Author(s): Noa Sela, Britta Mersch, Agnes Hotz‐Wagenblatt, Gil Ast
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pone.0184445

SWI/SNF Infobase—An exclusive information portal for SWI/SNF remodeling complex subunits
Cited by: 18
Author(s): M. Udayakumar, S Alagu Sankareswaran, R N Arun Goutham, Suma Mohan
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-015-1245-6

Genome-wide comparative analysis reveals human-mouse regulatory landscape and evolution
Cited by: 60
Author(s): Olgert Denas, Richard Sandstrom, Yong Cheng, Kathryn Beal, Javier Herrero, Ross C. Hardison, James Taylor
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-020-07063-2

CrustyBase: an interactive online database for crustacean transcriptomes
Cited by: 14
Author(s): Cameron J. Hyde, Quinn P. Fitzgibbon, Abigail Elizur, Gregory G. Smith, Tomer Ventura
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0001740

Architecture of an Antagonistic Tree/Fungus Network: The Asymmetric Influence of Past Evolutionary History
Cited by: 74
Author(s): Corinne Vacher, Dominique Piou, Marie‐Laure Desprez‐Loustau
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2164-9-525

NemaPath: online exploration of KEGG-based metabolic pathways for nematodes
Cited by: 25
Author(s): Todd Wylie, John Martin, Sahar Abubucker, Yong Yin, David N. Messina, Zhengyuan Wang, James P. McCarter, Makedonka Mitreva
Software Mentions: 1
Published: about 18 years ago

10.1371/journal.pone.0111777

Regulation of RAB5C Is Important for the Growth Inhibitory Effects of MiR-509 in Human Precursor-B Acute Lymphoblastic Leukemia
Cited by: 25
Author(s): Yee Sun Tan, Minjung Kim, Tami J. Kingsbury, Curt I. Civin, Wenli Cheng
Software Mentions: 1
Published: about 12 years ago

10.1186/s12864-018-5330-5

HumCFS: a database of fragile sites in human chromosomes
Cited by: 57
Author(s): Rajesh Kumar, Gandharva Nagpal, Vinod Kumar, Salman Sadullah Usmani, Piyush Agrawal, Gajendra P. S. Raghava
Software Mentions: 1
Published: over 7 years ago

10.1098/rsob.180131

DNA methylation subpatterns at distinct regulatory regions in human early embryos
Cited by: 15
Author(s): Rongsong Luo, Chunling Bai, Lei Yang, Zhong Zheng, Guanghua Su, Guang Gao, Zhuying Wei, Yongchun Zuo, Guangpeng Li
Software Mentions: 1
Published: about 8 years ago

10.3390/nu11020325

Divergent Effectiveness of Multispecies Probiotic Preparations on Intestinal Microbiota Structure Depends on Metabolic Properties
Cited by: 26
Author(s): Michele Biagioli, Daniela Capobianco, Adriana Carino, Silvia Marchianò, Federica Chiara, Patrizia Ricci, Eleonora Distrutti, Stefano Fiorucci
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0037952

Genome-Wide Characterization of Menin-Dependent H3K4me3 Reveals a Specific Role for Menin in the Regulation of Genes Implicated in MEN1-Like Tumors
Cited by: 47
Author(s): Sunita K. Agarwal, Raja Jothi
Software Mentions: 1
Published: over 14 years ago

10.2196/jmir.3.3.e25

Journal of Medical Internet Research is now indexed in Medline
Cited by: 4
Author(s): Günther Eysenbach
Software Mentions: 1
Published: about 25 years ago

10.1371/journal.pone.0015779

A Common CNR1 (Cannabinoid Receptor 1) Haplotype Attenuates the Decrease in HDL Cholesterol That Typically Accompanies Weight Gain
Cited by: 14
Author(s): QiPing Feng, Lan Jiang, Richard L. Berg, Melissa Antonik, Erin Mackinney, Jennifer Gunnell-Santoro, Catherine A. McCarty, Russell A. Wilke
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0159114

Whole Genome Pathway Analysis Identifies an Association of Cadmium Response Gene Loss with Copy Number Variation in Mutant p53 Bearing Uterine Endometrial Carcinomas
Cited by: 7
Author(s): Joe R. Delaney, Dwayne G. Stupack
Software Mentions: 1
Published: over 10 years ago

10.2174/1874192401711010084

Interpreting the Mechanism of APOE (p.Leu167del) Mutation in the Incidence of Familial Hypercholesterolemia; An In-silico Approach
Cited by: 11
Author(s): Omran M. Rashidi, Fatima Amanullah H.Nazar, Mohamed Nabil Alama, Zuhier Awan
Software Mentions: 1
Published: about 9 years ago

10.2196/jmir.9828

Responsiveness, Reliability, and Minimally Important and Minimal Detectable Changes of 3 Electronic Patient-Reported Outcome Measures for Low Back Pain: Validation Study
Cited by: 16
Author(s): Robert Froud, Carol Fawkes, Jonathan G. K. Foss, Martin Underwood, Dawn Carnes
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-017-3801-8

Accurate characterization of the IFITM locus using MiSeq and PacBio sequencing shows genetic variation in Galliformes
Cited by: 9
Author(s): Irene Bassano, Swee Hoe Ong, Nathan Lawless, Thomas James Whitehead, Mark Fife, Paul Kellam
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-14-229

Analysis of copy number variations in the sheep genome using 50K SNP BeadChip array
Cited by: 77
Author(s): Jiasen Liu, Li Zhang, Lingyang Xu, Hangxing Ren, Jian Lü, Xiaoning Zhang, Shifang Zhang, Xinlei Zhou, Caihong Wei, Fuping Zhao, Lixin Du
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-12-204

Recent acquisition of imprinting at the rodent Sfmbt2 locus correlates with insertion of a large block of miRNAs
Cited by: 49
Author(s): Qianwei Wang, Jacqueline Chow, Jenny H. Hong, Anne C. Ferguson-Smith, Carol Moreno, P. J. Seaby, Paul B. Vrana, Kamelia Miri, Joon Tak, Philip E.D. Chung, Gabriela F. Mastromonaco, Isabella Caniggia, Susannah Varmuza
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2164-11-293

Ensembl variation resources
Cited by: 114
Author(s): Yuan Chen, Fiona Cunningham, Daniel Ríos, William McLaren, James Smith, Bethan Pritchard, Giulietta Spudich, Simon Brent, Eugene Kulesha, Pablo Marín-Garcia, Damian Smedley, Ewan Birney, Paul Flicek
Software Mentions: 1
Published: over 16 years ago

10.1093/gigascience/giaa018

Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism
Cited by: 10
Author(s): Jin Zhang, Rongbin Hu, Avinash Sreedasyam, Travis M. Garcia, Anna Lipzen, Mei Wang, Pradeep Yerramsetty, Degao Liu, Vivian Ng, Jeremy Schmutz, John C. Cushman, Anne M. Borland, Asher Pasha, Nicholas J. Provart, Jay Chen, Wellington Muchero, Gerald A. Tuskan, Xiaohan Yang
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-15-1010

Insights into the miRNA regulations in human disease genes
Cited by: 36
Author(s): Jyotirmoy Das, Soumita Podder, Tapash Chandra Ghosh
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12864-015-1847-z

MEXPRESS: visualizing expression, DNA methylation and clinical TCGA data
Cited by: 240
Author(s): Alexander Koch, Tim De Meyer, Jana Jeschke, Wim Van Criekinge
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2164-15-867

A low-density SNP array for analyzing differential selection in freshwater and marine populations of threespine stickleback (Gasterosteus aculeatus)
Cited by: 19
Author(s): Anne‐Laure Ferchaud, Susanne Holst Pedersen, Dorte Bekkevold, Jianbo Jian, Yongchao Niu, Michael Møller Hansen
Software Mentions: 1
Published: about 12 years ago

10.1016/j.heliyon.2018.e00647

Comparative genomic analysis of eutherian adiponectin genes
Cited by: 4
Author(s): Marko Premzl
Software Mentions: 1
Published: over 8 years ago

10.2196/jmir.1833

WikiBuild: A New Online Collaboration Process For Multistakeholder Tool Development and Consensus Building
Cited by: 30
Author(s): Samir Gupta, Flora Wan, David Newton, Onil Bhattacharyya, Mark Chignell, Sharon E. Straus
Software Mentions: 1
Published: almost 15 years ago

10.1186/s13053-017-0082-9

Exome sequencing characterizes the somatic mutation spectrum of early serrated lesions in a patient with serrated polyposis syndrome (SPS)
Cited by: 6
Author(s): Sukanya Horpaopan, Jutta Kirfel, Sophia Peters, Michael Kloth, Robert Hüneburg, Janine Altmüller, Dmitriy Drichel, Margarete Odenthal, Glen Kristiansen, Christian Strassburg, Jacob Nattermann, Per Hoffmann, Peter Nürnberg, Reinhard Büttner, Holger Thiele, Philip Kahl, Isabel Spier, Stefan Aretz
Software Mentions: 1
Published: almost 9 years ago

10.1186/s41065-016-0022-0

Psychomotor retardation with a 1q42.11–q42.12 deletion
Cited by: 4
Author(s): Jialing He, Yuan Xie, Shu Kong, Wenjun Qiu, Xiaoman Wang, Ding Wang, Xiaofang Sun, Deming Sun
Software Mentions: 1
Published: over 9 years ago

10.2196/15649

Effectiveness of eHealth Nutritional Interventions for Middle-Aged and Older Adults: Systematic Review and Meta-analysis
Cited by: 14
Author(s): Caroline Robert, Mojisola Erdt, James Chong Boi Lee, Yuanyuan Cao, Nurhazimah Binte Naharudin, Yin Leng Theng
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-13-367

Evidence for sequence biases associated with patterns of histone methylation
Cited by: 11
Author(s): Zhong Wang, Huntington F. Willard
Software Mentions: 1
Published: almost 15 years ago

10.1186/1866-1955-6-17

A CTNNA3 compound heterozygous deletion implicates a role for αT-catenin in susceptibility to autism spectrum disorder
Cited by: 37
Author(s): Elena Bacchelli, Fabiola Ceroni, Dalila Pinto, Silvia Lomartire, Maila Giannandrea, Patrizia D’Adamo, Elena Bonora, Piero Parchi, Raffaella Tancredi, Agatino Battaglia, Elena Maestrini
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-015-2107-y

Replicate exome-sequencing in a multiple-generation family: improved interpretation of next-generation sequencing data
Cited by: 6
Author(s): Praveen F. Cherukuri, Valerie V. Maduro, Karin Fuentes-Fajardo, Kevin Lam, David R. Adams, Cynthia J. Tifft, James C. Mullikin, William A. Gahl, Cornelius F. Boerkoel
Software Mentions: 1
Published: almost 11 years ago

10.1186/s11689-015-9122-9

CNTN6 copy number variations in 14 patients: a possible candidate gene for neurodevelopmental and neuropsychiatric disorders
Cited by: 63
Author(s): Jie Hu, Jun Liao, Malini Sathanoori, Sally J. Kochmar, Jessica Sebastian, Svetlana A. Yatsenko, Urvashi Surti
Software Mentions: 1
Published: over 11 years ago

10.1038/s41439-020-00127-5

A reference catalog of DNA palindromes in the human genome and their variations in 1000 Genomes
Cited by: 10
Author(s): Madhavi K. Ganapathiraju, Sandeep Subramanian, Srilakshmi Chaparala, Kalyani B. Karunakaran
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12979-015-0045-9

Decline of FOXN1 gene expression in human thymus correlates with age: possible epigenetic regulation
Cited by: 21
Author(s): Marlon M. Reis, Krisztián Csomós, Luciene Paschoal Braga Dias, Zsolt Prodán, Tamás Szerafin, Wilson Savino, László Takács
Software Mentions: 1
Published: about 11 years ago

10.18632/aging.101470

Integrated DNA methylation and gene expression analysis identifies SLAMF7 as a key regulator of atherosclerosis
Cited by: 13
Author(s): Zhangyong Xia, Minghong Gu, Xiaodong Jia, Xiaoting Wang, Chunxia Wu, Jiangwen Guo, Liyong Zhang, Yifeng Du, Jiyue Wang
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-14-122

Comparative genomics using teleost fish helps to systematically identify target gene bodies of functionally defined human enhancers
Cited by: 15
Author(s): Nazia Parveen, Ayesha Masood, Nouman Iftikhar, Bushra Fazal Minhas, Rashid Minhas, Uzma Nawaz, Amir Ali Abbasi
Software Mentions: 1
Published: over 13 years ago

10.1111/j.1365-2583.2006.00679.x

Nuclear receptors of the honey bee: annotation and expression in the adult brain
Cited by: 72
Author(s): Rodrigo Velarde, Gene E. Robinson, Susan E. Fahrbach
Software Mentions: 1
Published: about 20 years ago

10.1155/2021/3064224

The Genetic Research in Alzheimer Disease (GERALD) Initiative Finds rs9320913 as a Neural eQTL of lincRNA AL589740.1
Cited by: 1
Author(s): Lidia Lopez-Gutierrez, José María García‐Alberca, Silvia Mendoza, Esther Gris, María Paz De la Guía, José Manuel Marín-Carmona, Emilio Alarcón‐Martín, Almudena Lobato, José Manuel Cruz‐Gamero, Laura Cura, Olga Ocejo, Javier Torrecilla, María Dolores Nieto, Concepción Urbano, Nuria Pareja, Macarena Luque, María García-Peralta, Rosario Carrillejo, José Luis Royo
Software Mentions: 1
Published: about 5 years ago

10.1001/jamanetworkopen.2021.16839

Genetic Variants Associated With Intraparenchymal Hemorrhage Progression After Traumatic Brain Injury
Cited by: 11
Author(s): Ruchira M. Jha, Benjamin Zusman, Ava M. Puccio, David O. Okonkwo, Matthew Pease, Shashvat M Desai, Matthew R Leach, Yvette P. Conley, Patrick M. Kochanek
Software Mentions: 1
Published: over 5 years ago

10.18502/jovr.v15i2.6730

Screening for Novel LOX and SOD1 Variants in Keratoconus Patients from Brazil
Cited by: 8
Author(s): Diego Nery Benevides Gadelha, Alex Felipe Barbosa Feitosa, Rafaela Gomes da Silva, Luana Talita Antunes, Matheus Cavalcanti Muniz, Matheus Alencar de Oliveira, Dáfine de Oliveira Andrade, Nathalia Mayanna da Paz Silva, Sebastião Cronemberger, Bruno Luiz Fonseca Schamber-Reis
Software Mentions: 1
Published: over 6 years ago

10.1186/2040-2384-2-15

Fine mapping of the hereditary haemorrhagic telangiectasia (HHT)3 locus on chromosome 5 excludes VE-Cadherin-2, Sprouty4 and other interval genes
Cited by: 17
Author(s): Fatima S Govani, CL Shovlin
Software Mentions: 1
Published: almost 17 years ago

10.1007/s10815-016-0795-0

Isolation and expression of the human gametocyte-specific factor 1 gene (GTSF1) in fetal ovary, oocytes, and preimplantation embryos
Cited by: 9
Author(s): John Huntriss, Jianping Lu, Karen Hemmings, Rosemary A. L. Bayne, Richard A. Anderson, Anthony J. Rutherford, Adam Balen, Kay Elder, Helen M. Picton
Software Mentions: 1
Published: about 10 years ago

10.1007/s10815-021-02104-5

Cell-based non-invasive prenatal testing for monogenic disorders: confirmation of unaffected fetuses following preimplantation genetic testing
Cited by: 6
Author(s): Christian Liebst Frisk Toft, Hans Jakob Ingerslev, Ulrik Schiøler Kesmodel, Lotte Hatt, Ripudaman Singh, Katarina Ravn, Bolette Hestbek Nicolaisen, Inga Baasch Christensen, Mathias Kølvraa, Line Dahl Jeppesen, Palle Schelde, Ida Vogel, Niels Uldbjerg, Richard Farlie, Steffen Sommer, Marianne Louise Vang Østergård, Ann Nygaard Jensen, Helle Smidt Mogensen, Kristín Rós Kjartansdóttir, Birte Degn, Henrik Okkels, Anja Ernst, Inge Søkilde Pedersen
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-8-470

Maintenance of transposon-free regions throughout vertebrate evolution
Cited by: 32
Author(s): Cas Simons, Igor V. Makunin, Michael Pheasant, John S. Mattick
Software Mentions: 1
Published: almost 19 years ago

10.1074/jbc.M112.414367

Human and Viral Golgi Anti-apoptotic Proteins (GAAPs) Oligomerize via Different Mechanisms and Monomeric GAAP Inhibits Apoptosis and Modulates Calcium
Cited by: 32
Author(s): Nuno Saraiva, David L. Prole, Guia Carrara, Carlos Maluquer de Motes, Benjamin F. Johnson, Bernadette Byrne, Colin W. Taylor, Geoffrey L. Smith
Software Mentions: 1
Published: over 13 years ago

10.1074/jbc.M115.700856

Entry of Bluetongue Virus Capsid Requires the Late Endosome-specific Lipid Lysobisphosphatidic Acid
Cited by: 26
Author(s): Avnish Patel, Bjorn-Patrick Mohl, Polly Roy
Software Mentions: 1
Published: over 10 years ago

10.1016/j.jbc.2021.100704

Sp1 is a substrate of Keap1 and regulates the activity of CRL4AWDR23 ubiquitin ligase toward Nrf2
Cited by: 9
Author(s): Ferbian Milas Siswanto, Ami Oguro, Shingi Imaoka
Software Mentions: 1
Published: almost 6 years ago

Projects: pypi: browser

Enhanced Analysis

Science Score: 65/100

Penalties:

Papers Mentioning browser 2,125