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10.1186/s12886-020-01603-w

Optic nerve coloboma as extension of the phenotype of 22q11.23 duplication syndrome: a case report
Cited by: 0
Author(s): Claudia Valencia-Peña, Paula Jiménez-Sanchez, Wilmar Saldarriaga, César Payán‐Gómez
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0001740

Architecture of an Antagonistic Tree/Fungus Network: The Asymmetric Influence of Past Evolutionary History
Cited by: 74
Author(s): Corinne Vacher, Dominique Piou, Marie‐Laure Desprez‐Loustau
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2202-14-68

LOC689986, a unique gene showing specific expression in restricted areas of the rodent neocortex
Cited by: 3
Author(s): Kari Merete Ersland, Bjarte Håvik, Johanne Egge Rinholm, Vidar Gundersen, Carl Trygve Stansberg, Vidar M. Steen
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0111777

Regulation of RAB5C Is Important for the Growth Inhibitory Effects of MiR-509 in Human Precursor-B Acute Lymphoblastic Leukemia
Cited by: 25
Author(s): Yee Sun Tan, Minjung Kim, Tami J. Kingsbury, Curt I. Civin, Wenli Cheng
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2202-7-12

Sex-dependent gene expression in early brain development of chicken embryos
Cited by: 57
Author(s): Birger Scholz, Kim Kultima, Anna Mattsson, J. Axelsson, Björn Brunström, Krister Halldin, Michael Stigson, Lennart Dencker
Software Mentions: 1
Published: almost 19 years ago

10.7554/eLife.34410

Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb
Cited by: 129
Author(s): Carsten Wolff, Jean-Yves Tinévez, Tobias Pietzsch, Evangelia Stamataki, Benjamin Harich, Léo Guignard, Stephan Preibisch, Spencer Shorte, Philipp J. Keller, Pavel Tomančák, Anastasios Pavlopoulos
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2105-13-187

ParsEval: parallel comparison and analysis of gene structure annotations
Cited by: 24
Author(s): Daniel Standage, Volker Brendel
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0037952

Genome-Wide Characterization of Menin-Dependent H3K4me3 Reveals a Specific Role for Menin in the Regulation of Genes Implicated in MEN1-Like Tumors
Cited by: 47
Author(s): Sunita K. Agarwal, Raja Jothi
Software Mentions: 1
Published: over 12 years ago

10.1007/s13205-012-0063-7

Vertebrate patatin-like phospholipase domain-containing protein 4 (PNPLA4) genes and proteins: a gene with a role in retinol metabolism
Cited by: 7
Author(s): Roger S. Holmes
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0015779

A Common CNR1 (Cannabinoid Receptor 1) Haplotype Attenuates the Decrease in HDL Cholesterol That Typically Accompanies Weight Gain
Cited by: 14
Author(s): QiPing Feng, Lan Jiang, Richard L. Berg, Melissa Antonik, Erin Mackinney, Jennifer Gunnell-Santoro, Catherine A. McCarty, Russell A. Wilke
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0159114

Whole Genome Pathway Analysis Identifies an Association of Cadmium Response Gene Loss with Copy Number Variation in Mutant p53 Bearing Uterine Endometrial Carcinomas
Cited by: 7
Author(s): Joe R. Delaney, Dwayne G. Stupack
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2105-14-289

Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data
Cited by: 197
Author(s): Thorfinn Sand Korneliussen, Ida Moltke, Anders Albrechtsen, Rasmus Nielsen
Software Mentions: 1
Published: about 11 years ago

10.1038/s41598-017-03067-3

Identification of the functional variant driving ORMDL3 and GSDMB expression in human chromosome 17q12-21 in primary biliary cholangitis
Cited by: 23
Author(s): Yuki Hitomi, Kazuyuki Kojima, M. Kawashima, Yosuke Kawai, Nao Nishida, Yoshihiro Aiba, Michio Yasunami, Masao Nagasaki, Minoru Nakamura, Katsushi Tokunaga
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2202-12-46

An evolutionary conserved region (ECR) in the human dopamine receptor D4 gene supports reporter gene expression in primary cultures derived from the rat cortex
Cited by: 5
Author(s): Ursula M. Paredes, Vivien J. Bubb, K. Haddley, Gabriele A. Macho, John P. Quinn
Software Mentions: 1
Published: over 13 years ago

10.1093/database/baz018

FairBase: a comprehensive database of fungal A-to-I RNA editing
Cited by: 7
Author(s): Jinding Liu, Dongbo Wang, Yin-Na Su, Kun Lang, Rongjing Duan, Yufeng Wu, Fei Ma, Shuiqing Huang
Software Mentions: 1
Published: almost 6 years ago

10.1093/database/bau091

An online system for metabolic network analysis
Cited by: 7
Author(s): A. Ercüment Çiçek, Xin Qi, Ali Çakmak, Stephen R. Johnson, Han Xu, Sami Alshalwi, Z. Meral Özsoyoğlu, Gültekin Özsoyoğlu
Software Mentions: 1
Published: about 10 years ago

10.1093/database/bau062

UCbase 2.0: ultraconserved sequences database (2014 update)
Cited by: 18
Author(s): Vincenzo Lomonaco, Riccardo Martoglia, Federica Mandreoli, Laura Anderlucci, Warren Emmett, Silvio Bicciato, Cristian Taccioli
Software Mentions: 1
Published: over 10 years ago

10.7554/eLife.38906

Recurrent loss of HMGCS2 shows that ketogenesis is not essential for the evolution of large mammalian brains
Cited by: 31
Author(s): David Jebb, Michael Hiller
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2105-11-29

miRMaid: a unified programming interface for microRNA data resources
Cited by: 17
Author(s): Anders Jacobsen, Anders Krogh, Sakari Kauppinen, Morten Lindow
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12882-019-1471-2

Investigation of the variants at the binding site of inflammatory transcription factor NF-κB in patients with end-stage renal disease
Cited by: 4
Author(s): Jung-Mou Yang, Wei-Teing Chen, Meng-Chang Lee, Wen‐Hui Fang, Yu‐Juei Hsu, Chin-Lin, Chen Hc, Hsueh-Lu Chang, Chuan-Mu Chen, Min-Yu Tu, Chien-Wei Kuo, Yuan-Hau Lin, Po-Jen Hsiao, Sui-Lung Su
Software Mentions: 1
Published: over 5 years ago

10.1186/s12882-015-0028-2

A global overview of renal registries: a systematic review
Cited by: 69
Author(s): Frank Xiaoqing Liu, Peter Rutherford, Karen E. Smoyer‐Tomic, Sarah Prichard, Suzanne Laplante
Software Mentions: 1
Published: over 9 years ago

10.1186/s12891-015-0531-4

A genome-wide association study of copy-number variation identifies putative loci associated with osteoarthritis in Koreans
Cited by: 9
Author(s): Sanghoon Moon, Bhumsuk Keam, Mi Yeong Hwang, Young Lee, Suyeon Park, Ji Hee Oh, Yeon‐Jung Kim, Heun‐Sik Lee, Nam Hee Kim, Young Jin Kim, Dong-Hyun Kim, Bok‐Ghee Han, Bong-Jo Kim, Juyoung Lee
Software Mentions: 1
Published: over 9 years ago

10.1016/j.ydbio.2010.07.007

Pax2 coordinates epithelial morphogenesis and cell fate in the inner ear
Cited by: 61
Author(s): Nicolas Christophorou, Michael Mende, Laura Lleras-Forero, Timothy Grocott, Andrea Streit
Software Mentions: 1
Published: about 14 years ago

10.1016/j.devcel.2011.04.008

Genome-wide Analysis of Simultaneous GATA1/2, RUNX1, FLI1, and SCL Binding in Megakaryocytes Identifies Hematopoietic Regulators
Cited by: 236
Author(s): Marloes R. Tijssen, Ana Cvejic, Anagha Joshi, Rebecca Hannah, Rita Ferreira, Ariel Forrai, Dana Bellissimo, S. Helen Oram, Peter A. Smethurst, Nicola K. Wilson, Xiaonan Wang, Katrin Ottersbach, Derek L. Stemple, Anthony Green, Willem H. Ouwehand, Berthold Göttgens
Software Mentions: 1
Published: over 13 years ago

10.1016/j.dci.2010.09.013

Identification and characterisation of the BPI/LBP/PLUNC-like gene repertoire in chickens reveals the absence of a LBP gene
Cited by: 29
Author(s): Shih‐Chieh Chiang, Edwin J.A. Veldhuizen, Frances A. Barnes, C. Jeremy Craven, Henk P. Haagsman, Colin D. Bingle
Software Mentions: 1
Published: over 13 years ago

10.1002/dvdy.69

A novel conserved enhancer at zebrafish zic3 and zic6 loci drives neural expression
Cited by: 1
Author(s): Rashid Minhas, Aleksandra Paterek, Maciej Łapiński, Michał A. Bazała, Vladimir Korzh, Cecilia Lanny Winata
Software Mentions: 1
Published: over 5 years ago

10.1111/dgd.12239

Identification and functional characterization of novel transcriptional enhancers involved in regulating human<i><scp>GLI</scp>3</i>expression during early development
Cited by: 6
Author(s): Saneela Anwar, Rashid Minhas, Shahid Ali, Nicholas A. Lambert, Yasuhiko Kawakami, Greg Elgar, Syed Sikander Azam, Amir Ali Abbasi
Software Mentions: 1
Published: about 9 years ago

10.1186/s12860-020-00336-4

Reduced translation efficiency due to novel splicing variants in 5′ untranslated region and identification of novel cis-regulatory elements in canine and human BRCA2
Cited by: 2
Author(s): Yasunaga Yoshikawa, Hajime Kozuma, Masami Morimatsu, Kenji Sugawara, Koichi Orino
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2105-13-S3-S6

Detection of gene expression changes at chromosomal rearrangement breakpoints in evolution
Cited by: 8
Author(s): Adriana Muñoz, David Sankoff
Software Mentions: 1
Published: over 12 years ago

10.1186/s12867-018-0117-4

Molecular analysis of NPAS3 functional domains and variants
Cited by: 13
Author(s): Leiah M. Luoma, Fred B. Berry
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12867-017-0092-1

Early growth response protein 1 regulates promoter activity of α-plasma membrane calcium ATPase 2, a major calcium pump in the brain and auditory system
Cited by: 6
Author(s): Rebecca R. Minich, Jin Li, Bruce L. Tempel
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2105-14-S17-A17

FPD2GB2: Automating a transition from a customized genome browser to GBrowse2
Cited by: 1
Author(s): Roger G. Chui, Jerzy W. Jaromczyk, Neil Moore, Christopher L. Schardl
Software Mentions: 1
Published: about 11 years ago

10.1242/dmm.037655

CRISPR/Cas9-generated mouse model of Duchenne muscular dystrophy recapitulating a newly identified large 430 kb deletion in the human <i>DMD</i> gene
Cited by: 27
Author(s): Т. В. Егорова, Evgenia Zotova, Denis A. Reshetov, Anna V. Polikarpova, Svetlana G. Vassilieva, D. Vlodavets, А. В. Гаврилов, Sergey V. Ulianov, Vladimir L. Buchman, Alexey V. Deykin
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2105-11-S1-S14

Prediction of novel miRNAs and associated target genes in Glycine max
Cited by: 106
Author(s): Trupti Joshi, Zhe Yan, Marc Libault, Dong‐Hoon Jeong, Sunhee Park, Pamela J. Green, D. Janine Sherrier, Andrew Farmer, Greg May, Blake C. Meyers, Dong Xu, Gary Stacey
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2199-10-7

Multiple RNAs from the mouse carboxypeptidase M locus: functional RNAs or transcription noise?
Cited by: 3
Author(s): Alessander de Oliveira Guimarães, Fabiana Louise Motta, Viviane S. Alves, Beatriz A. Castilho, João Bosco Pesquero
Software Mentions: 1
Published: almost 16 years ago

10.15252/embj.201592534

Inducible chromatin priming is associated with the establishment of immunological memory in T cells
Cited by: 87
Author(s): Sarah L Bevington, Pierre Cauchy, Jason Piper, Elisabeth Bertrand, Naveen Lalli, Rebecca C Jarvis, Liam Niall Gilding, Sascha Ott, Constanze Bonifer, Peter N. Cockerill
Software Mentions: 1
Published: almost 9 years ago

10.15252/embj.201590973

Synthetic viability genomic screening defines Sae2 function in DNA repair
Cited by: 38
Author(s): Fabio Puddu, Tobias Oelschlaegel, Ilaria Guerini, Nicola J. Geisler, Hengyao Niu, Mareike Herzog, Israel Salguero, Bernardo Ochoa‐Montaño, Emmanuelle Viré, Patrick Sung, David J. Adams, Thomas M. Keane, Stephen Jackson
Software Mentions: 1
Published: over 9 years ago

10.15252/embj.201796729

<scp>hDNA</scp> 2 nuclease/helicase promotes centromeric <scp>DNA</scp> replication and genome stability
Cited by: 36
Author(s): Zhengke Li, Bochao Liu, Weiwei Jin, Xiwei Wu, Mian Zhou, Vincent Wenzhe Liu, Ajay Goel, Zhiyuan Shen, Li Zheng, Binghui Shen
Software Mentions: 1
Published: over 6 years ago

10.1186/s12859-017-1846-y

RiceMetaSys for salt and drought stress responsive genes in rice: a web interface for crop improvement
Cited by: 26
Author(s): Maninder Sandhu, V. Sureshkumar, Chandra Prakash, Rekha Dixit, Amolkumar U. Solanke, Tilak Raj Sharma, Trilochan Mohapatra, S. V. Amitha Mithra
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2180-9-S1-S5

Programmed cell death in host-symbiont associations, viewed through the Gene Ontology
Cited by: 14
Author(s): Marcus C. Chibucos, Candace Whitmer Collmer, Trudy Torto-Alalibo, Michelle Gwinn-Giglio, Magdalen Lindeberg, Donghui Li, Brett M. Tyler
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12920-019-0527-2

Targeted next generation sequencing as a tool for precision medicine
Cited by: 51
Author(s): Markus Gulilat, Tyler Lamb, Wendy A. Teft, Jian Wang, Jacqueline S. Dron, John F. Robinson, Rommel G. Tirona, Robert A. Hegele, Richard B. Kim, Ute I. Schwarz
Software Mentions: 1
Published: over 5 years ago

10.1186/s12920-015-0105-1

Integrative epigenomic and genomic filtering for methylation markers in hepatocellular carcinomas
Cited by: 23
Author(s): Jing Shen, Clare V. LeFave, Iryna Sirosh, Abby B. Siegel, Benjamin Tycko, Regina M. Santella
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-00301-w

MKL1 defines the H3K4Me3 landscape for NF-κB dependent inflammatory response
Cited by: 47
Author(s): Liming Yu, Fei Fang, Xin Dai, Huihui Xu, Xinming Qi, Mingming Fang, Yong Xu
Software Mentions: 1
Published: over 7 years ago

10.15252/emmm.201606345

CoQ deficiency causes disruption of mitochondrial sulfide oxidation, a new pathomechanism associated with this syndrome
Cited by: 58
Author(s): Marta Luna-Sánchez, Agustín Hidalgo‐Gutiérrez, Tatjana M. Hildebrandt, Julio Chaves-Serrano, Eliana Barriocanal‐Casado, A. Santos-Fandila, Miguel Romero, Ramy K. A. Sayed, Juan Duarte, Holger Prokisch, Markus Schuelke, Felix Distelmaier, Germaine Escames, Darío Acuña‐Castroviejo, Luís C. López
Software Mentions: 1
Published: about 8 years ago

10.1186/s12920-021-00998-9

Correlating genomic copy number alterations with clinicopathologic findings in 75 cases of hepatocellular carcinoma
Cited by: 4
Author(s): Gang Peng, Hongyan Chai, Weizhen Ji, Yufei Lu, Sheng‐Ming Wu, Hongyu Zhao, Peining Li, Qiping Hu
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-10-S15-S3

Gevab: a prototype genome variation analysis browsing server
Cited by: 2
Author(s): Woo-Yeon Kim, Sang Yoon Kim, TaeHyung Kim, Sung‐Min Ahn, Ha Na Byun, Deokhoon Kim, Dae-Soo Kim, Yong Seok Lee, Ho Ghang, Daeui Park, Byoung-Chul Kim, Chulhong Kim, Sung-Hoon Lee, Seong‐Jin Kim, Jong Bhak
Software Mentions: 1
Published: almost 15 years ago

10.1186/1755-8794-2-35

Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing
Cited by: 40
Author(s): Sanne Nygaard, Anders Jacobsen, Morten Lindow, Jens Eriksen, Eva Balslev, Henrik Flyger, Niels Tolstrup, Søren Møller, Anders Krogh, Thomas Litman
Software Mentions: 1
Published: over 15 years ago

10.7554/eLife.56383

Stem cell niche exit in C. elegans via orientation and segregation of daughter cells by a cryptic cell outside the niche
Cited by: 21
Author(s): Kristie Gordon, Jay W Zussman, Xin Li, Camille Miller, David R. Sherwood
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2105-14-167

Identifying cancer mutation targets across thousands of samples: MuteProc, a high throughput mutation analysis pipeline
Cited by: 2
Author(s): Alireza Hadj Khodabakhshi, Anthony P. Fejes, İnanç Birol, Steven J.M. Jones
Software Mentions: 1
Published: over 11 years ago

10.1186/1755-8794-1-19

Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis
Cited by: 26
Author(s): Eleni M. Tomazou, Vardhman K. Rakyan, Grégory Lefebvre, Robert Andrews, Peter Ellis, David Jackson, Cordelia Langford, Matthew D. Francis, Liselotte Bäckdahl, Marcos Mateo Miretti, Penny Coggill, Diego Ottaviani, Denise Sheer, Adele Murrell, Stephan Beck
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2105-10-59

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation
Cited by: 32
Author(s): Sandra N. Loevenich, Erich Brunner, Nichole L. King, Eric W. Deutsch, Stephen E. Stein, Ruedi Aebersold, Ernst Hafen
Software Mentions: 1
Published: almost 16 years ago

10.1186/1476-069X-13-34

Genetic variation in the CYP2B6 Gene is related to circulating 2,2’,4,4’-tetrabromodiphenyl ether (BDE-47) concentrations: an observational population-based study
Cited by: 9
Author(s): Johanna Penell, Lars Lind, Tove Fall, Anne-Christine Syvänen, Tomas Axelsson, Per Lundmark, Andrew P. Morris, Cecilia M. Lindgren, Anubha Mahajan, Samira Salihović, Bert van Bavel, Erik Ingelsson, P. Monica Lind
Software Mentions: 1
Published: over 10 years ago

10.1186/s12920-019-0491-x

FTO haplotyping underlines high obesity risk for European populations
Cited by: 16
Author(s): Vladimir N. Babenko, Roman O. Babenko, Junaid Gamieldien, A. L. Markel
Software Mentions: 1
Published: over 5 years ago

10.1080/15592294.2015.1062963

Placental 5-methylcytosine and 5-hydroxymethylcytosine patterns associate with size at birth
Cited by: 17
Author(s): Chinthika Piyasena, Rebecca M. Reynolds, Batbayar Khulan, Jonathan R. Seckl, Gopi Menon, Amanda J. Drake
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.25940

A novel molecular mechanism for a long non-coding RNA PCAT92 implicated in prostate cancer
Cited by: 5
Author(s): Pushpinder Bawa, Samathmika Ravi, Swagatika Paul, Bibha Chaudhary, Subhashini Srinivasan
Software Mentions: 1
Published: over 6 years ago

10.1186/s12881-014-0128-z

Molecular and clinical analyses of 16q24.1 duplications involving FOXF1 identify an evolutionarily unstable large minisatellite
Cited by: 11
Author(s): Avinash V. Dharmadhikari, Tomasz Gambin, Przemysław Szafrański, Wenjian Cao, Frank J. Probst, Weihong Jin, Ping Fang, Krzysztof Gogolewski, Anna Gambin, Jaya K. George‐Abraham, Sailaja Golla, F. Boidein, Bénédicte Duban‐Bedu, Bruno Delobel, Joris Andrieux, Kerstin Becker, Elke Holinski‐Feder, Sau Wai Cheung, Paweł Stankiewicz
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2350-8-S1-S15

Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham study
Cited by: 185
Author(s): Sudha Seshadri, Anita L. DeStefano, Rhoda Au, Joseph M. Massaro, Alexa Beiser, Margaret Kelly-Hayes, Carlos S. Kase, Ralph B. D’Agostino, Charles DeCarli, Larry D. Atwood, Philip A. Wolf
Software Mentions: 1
Published: about 17 years ago

10.7554/eLife.23570

Functional mapping of yeast genomes by saturated transposition
Cited by: 115
Author(s): Agnès H. Michel, Riko Hatakeyama, Philipp Kimmig, Meret Arter, Matthias Peter, Joao Matos, Claudio De Virgilio, Benoı̂t Kornmann
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.27152

Safety evaluation of conditionally immortalized cells for renal replacement therapy
Cited by: 5
Author(s): Milos Mihajlovic, Sam Hariri, Koen C.G. Westphal, Manoe J. Janssen, Miriam J Oost, Laura Bongiovanni, Lambertus P. van den Heuvel, Alain de Bruin, Luuk B. Hilbrands, Rosalinde Masereeuw
Software Mentions: 1
Published: about 5 years ago

10.1186/s12986-015-0050-1

Epigenetic effects of casein-derived opioid peptides in SH-SY5Y human neuroblastoma cells
Cited by: 25
Author(s): Malav Suchin Trivedi, Nathaniel Hodgson, Stephen J. Walker, Geert Trooskens, Vineeth Nair, Richard C. Deth
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12881-019-0905-9

MTHFR and F5 genetic variations have association with preeclampsia in Pakistani patients: a case control study
Cited by: 14
Author(s): Feriha Fatima Khidri, Yar Muhammad Waryah, Faiza Kamran Ali, Hina Shaikh, Ikram Din Ujjan, Ali Muhammad Waryah
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2350-8-S1-S14

Genome-wide association with bone mass and geometry in the Framingham Heart Study
Cited by: 240
Author(s): Douglas P. Kiel, Serkalem Demissie, Josée Dupuis, Kathryn L. Lunetta, Joanne M. Murabito, David Karasik
Software Mentions: 1
Published: almost 18 years ago

10.1186/1756-8935-4-13

The relationship between transcription initiation RNAs and CCCTC-binding factor (CTCF) localization
Cited by: 40
Author(s): Ryan J. Taft, Peter G. Hawkins, John S. Mattick, Kevin V. Morris
Software Mentions: 1
Published: over 13 years ago

10.7554/eLife.12089

Regulatory polymorphisms modulate the expression of HLA class II molecules and promote autoimmunity
Cited by: 102
Author(s): Prithvi Raj, Ekta Rai, Ran Song, Shaheen Khan, Benjamin Wakeland, Kasthuribai Viswanathan, Carlos Arana, Chao Liang, Bo Zhang, Igor Dozmorov, Ferdicia Carr-Johnson, Mitja Mitrovič, Graham B. Wiley, Jennifer A. Kelly, Bernard Lauwerys, Nancy J. Olsen, Chris Cotsapas, Christine Kim Garcia, Carol A. Wise, John B. Harley, Swapan K. Nath, Judith A. James, Chaim O. Jacob, Betty P. Tsao, Chandrashekhar Pasare, David R. Karp, Quan Zhen Li, Patrick M. Gaffney, Edward K. Wakeland
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2105-7-S5-S4

Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus
Cited by: 35
Author(s): Mohammad Asif Khan, A. T. Heiny, Kenneth X. Lee, Kellathur N. Srinivasan, Tin Wee Tan, J. Thomas August, Vladimir Brusic
Software Mentions: 1
Published: almost 18 years ago

10.1186/s12859-018-2247-6

CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata
Cited by: 9
Author(s): Syed Ahmad Chan Bukhari, Marcos Martínez-Romero, Martin J. O’ Connor, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Kei‐Hoi Cheung, Steven H. Kleinstein
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2105-15-S1-S8

AnnotateGenomicRegions: a web application
Cited by: 8
Author(s): Luca Zammataro, Rita DeMolfetta, Gabriele Bucci, Arnaud Céol, Heiko Mul̈ler
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2350-8-17

Genetic mapping of a new heart rate QTL on chromosome 8 of spontaneously hypertensive rats
Cited by: 13
Author(s): Gustavo J. J. Silva, Alexandre C. Pereira, E M Krieger, José Eduardo Krieger
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2350-14-116

Genetic mapping of high caries experience on human chromosome 13
Cited by: 18
Author(s): Érika Calvano Küchler, Kathleen Deeley, Bao Ho, Samantha Linkowski, Chelsea Meyer, Jacqueline Noel, M. Zahir Kouzbari, Mariana Bezamat, José Mauro Granjeiro, Leonardo Santos Antunes, Fernanda Volpe de Abreu, Marcelo C. Costa, Patrícia Nivoloni Tannure, Figen Seymen, Mine Koruyucu, Aslı Patır, Juan C. Mereb, Fernando A. Poletta, Eduardo E. Castilla, Iêda M. Orioli, Mary L. Marazita, Alexandre R. Vieira
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2350-12-68

Rapid screening for chromosomal aneuploidies using array-MLPA
Cited by: 16
Author(s): Jingbin Yan, Miao Xu, Chenglong Xiong, Dong‐Ying Zhou, Zhaorui Ren, Ying Huang, Monique Mommersteeg, Rinie van Beuningen, Ying Tai Wang, Shixiu Liao, Fanyi Zeng, Ying Wu, Yi‐Tao Zeng
Software Mentions: 1
Published: over 13 years ago

10.1186/s12879-018-3153-2

Polymorphisms in the Th17 cell-related RORC gene are associated with spontaneous clearance of HCV in Chinese women
Cited by: 2
Author(s): Zhe Xie, Yuantao Li, Long Lü, Hua Liang, Weiping Cai, Tao Shen
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.65041

Pervasive duplication of tumor suppressors in Afrotherians during the evolution of large bodies and reduced cancer risk
Cited by: 36
Author(s): Juan Manuel Vazquez, Vincent J. Lynch
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2172-12-54

Regulation of IL-2 gene expression by Siva and FOXP3 in human T cells
Cited by: 9
Author(s): Virginia K. Hench, Lishan Su
Software Mentions: 1
Published: about 13 years ago

10.1186/1756-8935-7-28

Meta-analysis of human methylomes reveals stably methylated sequences surrounding CpG islands associated with high gene expression
Cited by: 71
Author(s): Rachel D. Edgar, Powell Patrick Cheng Tan, Élodie Portales-Casamar, Paul Pavlidis
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms12128695

Genetic Association and Altered Gene Expression of Mir-155 in Multiple Sclerosis Patients
Cited by: 91
Author(s): Elvezia Maria Paraboschi, Giulia Soldà, Donato Gemmati, Elisa Orioli, G Zeri, Maria Donata Benedetti, Alessandro Salviati, Nadia Barizzone, Maurizio Leone, Stefano Duga, Rosanna Asselta
Software Mentions: 1
Published: almost 13 years ago

10.1038/ejhg.2014.296

Genome-wide analysis identifies a role for common copy number variants in specific language impairment
Cited by: 41
Author(s): Nuala H. Simpson, Fabiola Ceroni, Rose H. Reader, Laura Covill, Julian C. Knight, Elizabeth R Hennessy, Patrick Bolton, Gina Conti‐Ramsden, Anne O’Hare, Gillian Baird, Simon E. Fisher, Dianne F. Newbury
Software Mentions: 1
Published: almost 10 years ago

10.1186/s41824-019-0057-3

ROC study and SUV threshold using quantitative multi-modal SPECT for bone imaging
Cited by: 13
Author(s): A. Hans Vija, Peter Bartenstein, Jerry W. Froelich, Torsten Kuwert, Homer A. Macapinlac, Cory P. Daignault, Naveen Gowda, Orlin Hadjiev, Julie Hephzibah, Peng Huang, Harun Ilhan, Aaron Jessop, Michal Cachovan, Jun Ma, Xiaoming Ding, Don Spence, Günther Platsch, Zsolt Szabó
Software Mentions: 1
Published: over 5 years ago

10.1186/2041-9139-5-20

Genome-wide survey and expression analysis of the bHLH-PAS genes in the amphioxus Branchiostoma floridae reveal both conserved and diverged expression patterns between cephalochordates and vertebrates
Cited by: 10
Author(s): Kun-Lung Li, Tsai-Ming Lu, Jr-Kai Yu
Software Mentions: 1
Published: over 10 years ago

10.1186/s13227-016-0051-9

Developmental expression of “germline”- and “sex determination”-related genes in the ctenophore Mnemiopsis leidyi
Cited by: 24
Author(s): Adam M. Reitzel, Kevin Pang, Mark Q. Martindale
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms151120158

A Microdeletion of Chromosome 9q33.3 Encompasses the Entire LMX1B Gene in a Chinese Family with Nail Patella Syndrome
Cited by: 6
Author(s): Shujuan Jiang, Jiubin Zhang, Dan Huang, Yuanyuan Zhang, Xiaoliang Liu, Yinzhao Wang, Rong He, Yanyan Zhao
Software Mentions: 1
Published: about 10 years ago

10.3390/ijms161023545

A Large-Scale Analysis of the Relationship of Synonymous SNPs Changing MicroRNA Regulation with Functionality and Disease
Cited by: 27
Author(s): Yuchen Wang, Chengxiang Qiu, Qinghua Cui
Software Mentions: 1
Published: about 9 years ago

10.1186/s12865-018-0257-9

The expression analysis of Fra-1 gene and IL-11 protein in Iranian patients with ulcerative colitis
Cited by: 16
Author(s): Milad Sabzevary‐Ghahfarokhi, Mojtaba Shohan, Hedayatollah Shirzad, Ghorbanali Rahimian, Nader Bagheri, Amin Soltani, Fatemeh Deris, Mahdi Ghatrehsamani, Ehsan Razmara
Software Mentions: 1
Published: over 6 years ago

10.1038/s12276-021-00586-y

A study of transposable element-associated structural variations (TASVs) using a de novo-assembled Korean genome
Cited by: 7
Author(s): Seyoung Mun, Songmi Kim, Wooseok Lee, Keunsoo Kang, Thomas J. Meyer, Bok‐Ghee Han, Kyudong Han, Heui‐Soo Kim
Software Mentions: 1
Published: over 3 years ago

10.12688/f1000research.5923.2

Development of an image-based screening system for inhibitors of the plastidial MEP pathway and of protein geranylgeranylation
Cited by: 1
Author(s): Michael Hartmann, Elisabet Gas‐Pascual, Andréa Hemmerlin, Michel Rohmer, Thomas J. Bach
Software Mentions: 1
Published: over 9 years ago

10.1186/s12878-018-0113-4

Identification of a novel mutation in the factor VIII gene causing severe haemophilia A
Cited by: 3
Author(s): Sara Konstantin Nissen, Alex Lund Laursen, Lone Hvitfeldt Poulsen, Trine H. Mogensen
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-12-482

Sequence comparison of prefrontal cortical brain transcriptome from a tame and an aggressive silver fox (Vulpes vulpes)
Cited by: 50
Author(s): Anna V. Kukekova, Jennifer L. Johnson, Clotilde Teiling, Lewyn Li, I. N. Oskina, Anastasiya V. Kharlamova, Р. Г. Гулевич, Ravee Padte, Michael M. Dubreuil, Anastasiya V. Vladimirova, Darya V. Shepeleva, С. Г. Шихевич, Qi Sun, Lalit Ponnala, Svetlana V. Temnykh, Lyudmila N. Trut, Gregory M. Acland
Software Mentions: 1
Published: about 13 years ago

10.12688/f1000research.3-48.v1

HeatMapViewer: interactive display of 2D data in biology
Cited by: 17
Author(s): Guy Yachdav, Maximilian Hecht, Metsada Pasmanik‐Chor, Adva Yeheskel, Burkhard Rost
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2164-13-708

Identification of 3′ gene ends using transcriptional and genomic conservation across vertebrates
Cited by: 5
Author(s): Marcos Morgan, Alessandra Iaconcig, Andrés F. Muro
Software Mentions: 1
Published: almost 13 years ago

10.18632/oncotarget.28037

Diverse transcriptional regulation and functional effects revealed by CRISPR/Cas9-directed epigenetic editing
Cited by: 3
Author(s): Miguel Vizoso, Jacco van Rheenen
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms18030492

Hotspot Selective Preference of the Chimeric Sequences Formed in Multiple Displacement Amplification
Cited by: 8
Author(s): Jing Tu, Na Lü, Mengqin Duan, Mengting Huang, Liang Chen, Junji Li, Jing Guo, Lu Zhang
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms18030571

Epigenetic Regulation of BDNF Gene during Development and Diseases
Cited by: 45
Author(s): Kuan-Wei Chen, Linyi Chen
Software Mentions: 1
Published: over 7 years ago

10.1093/femsyr/fox074

Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D
Cited by: 74
Author(s): Alex N. Salazar, Arthur R. Gorter de Vries, Marcel van den Broek, Melanie Wijsman, Pilar de la Torre Cortés, Anja Brickwedde, Nick Brouwers, Jean‐Marc Daran, Thomas Abeel
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2164-9-39

SNPs and Hox gene mapping in Ciona intestinalis
Cited by: 9
Author(s): Luigi Caputi, Marco Borra, Nikos Andreakis, Elio Biffali, Paolo Sordino
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2164-11-632

Expression, tandem repeat copy number variation and stability of four macrosatellite arrays in the human genome
Cited by: 37
Author(s): Deanna C. Tremblay, Graham Alexander, Shawn C. Moseley, Brian P. Chadwick
Software Mentions: 1
Published: about 14 years ago

10.3389/fbioe.2020.00088

Genome-Wide DNA Methylation Enhances Stemness in the Mechanical Selection of Tumor-Repopulating Cells
Cited by: 10
Author(s): Wei Huang, Hui Hu, Qiong Zhang, Ning Wang, Xiangliang Yang, An‐Yuan Guo
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-11-531

Sequence-structure-function relations of the mosquito leucine-rich repeat immune proteins
Cited by: 58
Author(s): Robert M. Waterhouse, Michael Povelones, George K. Christophides
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-9-41

SNPExpress: integrated visualization of genome-wide genotypes, copy numbers and gene expression levels
Cited by: 17
Author(s): Mathijs A. Sanders, Roel G.W. Verhaak, W M C Geertsma-Kleinekoort, Saman Abbas, Sebastiaan Horsman, Peter J. van der Spek, Bob Löwenberg, Peter J.M. Valk
Software Mentions: 1
Published: almost 17 years ago

10.3389/fcvm.2019.00080

Inherited Thrombocytopenia: Update on Genes and Genetic Variants Which may be Associated With Bleeding
Cited by: 38
Author(s): Ibrahim Almazni, Rachel J Stapley, Neil V. Morgan
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms18081752

Increased Expression of Plasma-Induced ABCC1 mRNA in Cystic Fibrosis
Cited by: 7
Author(s): Justin Eze Ideozu, Zhang Xi, Amy Pan, Zainub Ashrafi, Katherine Woods, Martin J. Hessner, Pippa Simpson, Hara Levy
Software Mentions: 1
Published: over 7 years ago

10.3389/fcell.2021.676543

Imprinted Gene Expression and Function of the Dopa Decarboxylase Gene in the Developing Heart
Cited by: 7
Author(s): Adam Prickett, Bertille Montibus, Nikolaos Barkas, Samuele M. Amante, M. M. Franco, Michael Cowley, William Puszyk, Matthew F. Shannon, Melita Irving, Marta Madon-Simon, Andrew Ward, Reiner Schulz, H. Scott Baldwin, Rebecca J. Oakey
Software Mentions: 1
Published: over 3 years ago

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