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10.1186/1471-2164-9-61

Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species
Cited by: 50
Author(s): Celine A. Hayden, Giovanni Bosco
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2164-6-128

Genome annotation of Anopheles gambiae using mass spectrometry-derived data
Cited by: 60
Author(s): Dário Eluan Kalume, Suraj Peri, Raghunath Reddy, Jun Zhong, Mobolaji Okulate, Nirbhay Kumar, Akhilesh Pandey
Software Mentions: 1
Published: almost 21 years ago

10.1186/s12864-017-3950-9

PiiL: visualization of DNA methylation and gene expression data in gene pathways
Cited by: 3
Author(s): Behrooz Torabi Moghadam, Neda Zamani, Jan Komorowski, Manfred Grabherr
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-12-S3-S15

Effective gene collection from the metatranscriptome of marine microorganisms
Cited by: 10
Author(s): Atsushi Ogura, Mengjie Lin, Yuya Shigenobu, Atushi Fujiwara, Kazuho Ikeo, Satoshi Nagai
Software Mentions: 1
Published: over 15 years ago

10.1186/s12864-017-3877-1

SalmoBase: an integrated molecular data resource for Salmonid species
Cited by: 46
Author(s): Jeevan Karloss Antony Samy, Teshome Dagne Mulugeta, Torfinn Nome, Simen Rød Sandve, Fabian Grammes, Matthew Kent, Sigbjørn Lien, Dag Inge Våge
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2164-7-236

Comparison of methods for genomic localization of gene trap sequences
Cited by: 3
Author(s): Courtney Harper, Conrad C. Huang, Doug Stryke, Michiko Kawamoto, Thomas E. Ferrin, Patricia C. Babbitt
Software Mentions: 1
Published: almost 20 years ago

10.1186/1471-2164-7-121

Widespread ectopic expression of olfactory receptor genes
Cited by: 214
Author(s): Ester Feldmesser, Tsviya Olender, Miriam Khen, Itai Yanai, Ron Ophir, Doron Lancet
Software Mentions: 1
Published: over 20 years ago

10.1186/s12864-016-3325-7

Genome-wide map of RNA degradation kinetics patterns in dendritic cells after LPS stimulation facilitates identification of primary sequence and secondary structure motifs in mRNAs
Cited by: 16
Author(s): Yutaro Kumagai, Alexis Vandenbon, Shunsuke Teraguchi, Shizuo Akira, Yutaka Suzuki
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-017-3666-x

Comparative genomic identification and validation of β-defensin genes in the Ovis aries genome
Cited by: 14
Author(s): Timothy Hall, C. McQuillan, Emma K. Finlay, Cliona O’Farrelly, Seán Fair, Kieran G. Meade
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-13-504

Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells
Cited by: 101
Author(s): Georges St. Laurent, Dmitry Shtokalo, Michael Tackett, Zhaoqing Yang, Tatjana Eremina, Claes Wahlestedt, Silvio Urcuqui-Inchima, Bernd Seilheimer, Timothy A. McCaffrey, Philipp Kapranov
Software Mentions: 1
Published: over 14 years ago

10.1186/s12864-016-2999-1

The transcriptional and splicing landscape of intestinal organoids undergoing nutrient starvation or endoplasmic reticulum stress
Cited by: 20
Author(s): Jessica Tsalikis, Qun Pan, Ivan Tattoli, Charles Maisonneuve, Benjamin J. Blencowe, Dana J. Philpott, Stephen E. Girardin
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-14-927

Discovery of MLL1 binding units, their localization to CpG Islands, and their potential function in mitotic chromatin
Cited by: 16
Author(s): Minou Bina, Phillip Wyss, Elise Novorolsky, Noorfatin Zulkelfi, Jing Xue, R. Aden Price, Matthew Fay, Zach Gutmann, Brian D. Fogler, Daidong Wang
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-13-207

Transcriptome of the adult female malaria mosquito vector Anopheles albimanus
Cited by: 38
Author(s): Jesús Martínez-Barnetche, Rosa Elena Gómez-Barreto, Marbella Ovilla-Muñoz, Juan Téllez-Sosa, David E García López, Rhoel R. Dinglasan, Ceereena Ubaida‐Mohien, Robert M. MacCallum, Seth Redmond, John G. Gibbons, Antonis Rokas, Carlos A. Machado, Febe Elena Cázares-Raga, Lilia González-Cerón, Salvador Hernández‐Martínez, Mario Henry Rodríguez López
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-10-562

Development and bin mapping of a Rosaceae Conserved Ortholog Set (COS) of markers
Cited by: 62
Author(s): Antonio G. Cabrera, Alexander Kozik, Werner Howad, Pere Arús, Amy Iezzoni, Esther van der Knaap
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2164-10-162

Evolution of alternative and constitutive regions of mammalian 5'UTRs
Cited by: 65
Author(s): Alissa Resch, Aleksey Y. Ogurtsov, Igor B. Rogozin, Svetlana A. Shabalina, Eugene V. Koonin
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-8-39

A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains
Cited by: 810
Author(s): John N. Hutchinson, Alexander W. Ensminger, Christine Clemson, Christopher R. Lynch, Jeanne B. Lawrence, Andrew Chess
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2164-11-130

Identification and characterization of Tc1/mariner-like DNA transposons in genomes of the pathogenic fungi of the Paracoccidioides species complex
Cited by: 26
Author(s): Marjorie Mendes Marini, Tamiris Zanforlin, Patrícia Campi Santos, Roberto Rudge de Moraes Barros, Anne Cristina Pinheiro Guerra, Rosana Puccia, Maria Sueli Soares Felipe, Marcelo de Macedo Brígido, Célia Maria de Almeida Soares, Jerônimo C. Ruiz, José Franco da Silveira, Patrícia Silva Cisalpino
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-14-131

Genome-wide detection of copy number variations using high-density SNP genotyping platforms in Holsteins
Cited by: 76
Author(s): Li Jiang, Jicai Jiang, Jie Yang, Xuan Li, Jiying Wang, Haifei Wang, Xiangdong Ding, Jianfeng Liu, Qin Zhang
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-8-291

Exonization of the LTR transposable elements in human genome
Cited by: 53
Author(s): Jittima Piriyapongsa, Nalini Polavarapu, Mark Borodovsky, John F. McDonald
Software Mentions: 1
Published: about 19 years ago

10.1186/1471-2164-13-S4-S7

Large-scale computational identification of regulatory SNPs with rSNP-MAPPER
Cited by: 31
Author(s): Alberto Riva
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-11-562

Expansion and subfunctionalisation of flavonoid 3',5'-hydroxylases in the grapevine lineage
Cited by: 89
Author(s): Luigi Falginella, Simone D. Castellarin, R. Testolin, Grégory A. Gambetta, Michèle Morgante, Gabriele Di Gaspero
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-14-243

Conserved expression of natural antisense transcripts in mammals
Cited by: 38
Author(s): Maurice Ht Ling, Yuguang Ban, Hongxiu Wen, San Ming Wang, Xijin Ge
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2164-10-185

Characterization of the bovine pregnancy-associated glycoprotein gene family – analysis of gene sequences, regulatory regions within the promoter and expression of selected genes
Cited by: 72
Author(s): Bhanu P. Telugu, Angela M. Walker, Jonathan A. Green
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-13-44

miRdSNP: a database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes
Cited by: 150
Author(s): Andrew E. Bruno, L i Li, James Kalabus, Yinming Pan, Joseph L. Jilek, Zihua Hu
Software Mentions: 1
Published: over 14 years ago

10.1186/s12864-019-6183-2

RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics
Cited by: 24
Author(s): Vera Thole, Jean-Étienne Bassard, Ricardo H. Ramírez-González, Martin Trick, Bijan Ghasemi Afshar, Dario Breitel, Lionel Hill, Alexandre Foito, L.V.T. Shepherd, Sabine Freitag, Cláudia N. Santos, Regina Menezes, Pilar Banãdos, Michael Næsby, Yunlong Wang, Artëm Sorokin, О. А. Тихонова, Т. В. Шеленга, Derek Stewart, Philippe Vain, Cathie Martin
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-020-6510-7

Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest
Cited by: 59
Author(s): Michael E. Sparks, Raman Bansal, Joshua B. Benoit, Michael B. Blackburn, Hsu Chao, Mengyao Chen, Sammy Cheng, Christopher P. Childers, Huyen Dinh, Harshavardhan Doddapaneni, Shannon Dugan, Elena N. Elpidina, David W. Farrow, Markus Friedrich, Richard A. Gibbs, Brantley Hall, Yi Han, Richard W. Hardy, Christopher J. Holmes, Daniel Hughes, Panagiotis Ioannidis, Alys M. Cheatle Jarvela, J. Spencer Johnston, Jeffery W. Jones, Brent Kronmiller, Faith Kung, Sandra L. Lee, Alexander Martynov, Patrick Masterson, Florian Maumus, Monica Munoz‐Torres, Shwetha C. Murali, Terence Murphy, Donna M. Muzny, David R. Nelson, Brenda Oppert, Kristen A. Panfilio, Danielli Parrilha de Paula, Leslie Pick, Monica Poelchau, Jiaxin Qu, Katie Reding, Joshua H. Rhoades, Adelaide Rhodes, Stephen Richards, Rose Richter, Hugh M. Robertson, Andrew J. Rosendale, Zhijian Tu, Arun S. Velamuri, Robert M. Waterhouse, Matthew T. Weirauch, Jackson Wells, John H. Werren, Kim C. Worley, Evgeny M. Zdobnov, Dawn E. Gundersen‐Rindal
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-14-835

SNP genotyping reveals genetic diversity between cultivated landraces and contemporary varieties of tomato
Cited by: 48
Author(s): Giuseppe Colla, Pietro Piffanelli, Martina Caramante, Mariangela Coppola, Rosa Rao
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12864-017-3645-2

Genome-wide identification of conserved intronic non-coding sequences using a Bayesian segmentation approach
Cited by: 4
Author(s): Manjula Algama, Edward Tasker, Caitlin Williams, Adam C. Parslow, Robert J. Bryson-Richardson, Jonathan M. Keith
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-15-686

Hypoxic signature of microRNAs in glioblastoma: insights from small RNA deep sequencing
Cited by: 112
Author(s): Rahul Agrawal, Priyatama Pandey, Prerana Jha, Vivek K. Dwivedi, Chitra Sarkar, Ritu Kulshreshtha
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2164-9-533

Analysis of the largest tandemly repeated DNA families in the human genome
Cited by: 130
Author(s): Peter E. Warburton, Dan Hasson, Flavia Guillem, Chloé Lescale, Xiaoping Jin, György Abrusán
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2164-11-465

Distributed probing of chromatin structure in vivo reveals pervasive chromatin accessibility for expressed and non-expressed genes during tissue differentiation in C. elegans
Cited by: 20
Author(s): Ke Sha, Sam Guoping Gu, Luiz Pantalena-Filho, Anita Goh, Jamie Fleenor, Daniel Blanchard, C. H. Ravi Krishna, Andrew Fire
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2164-13-25

The architecture and ppGpp-dependent expression of the primary transcriptome of Salmonella Typhimurium during invasion gene expression
Cited by: 30
Author(s): Vinoy K. Ramachandran, Neil Shearer, Jobin John Jacob, Cynthia M. Sharma, Arthur R. Thompson
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-15-465

Analysis of structural diversity in wolf-like canids reveals post-domestication variants
Cited by: 17
Author(s): Óscar Ramírez, Ïñigo Olalde, J. Andrew Berglund, Belén Lorente-Galdós, Jessica Hernández-Rodríguez, Javier Quilez, Matthew T. Webster, Robert K. Wayne, Carles Lalueza-Fox, Carles Vilà, Tomàs Marquès‐Bonet
Software Mentions: 1
Published: about 12 years ago

10.1186/1471-2164-9-41

SNPExpress: integrated visualization of genome-wide genotypes, copy numbers and gene expression levels
Cited by: 17
Author(s): Mathijs A. Sanders, Roel G.W. Verhaak, W M C Geertsma-Kleinekoort, Saman Abbas, Sebastiaan Horsman, Peter J. van der Spek, Bob Löwenberg, Peter J.M. Valk
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2164-11-531

Sequence-structure-function relations of the mosquito leucine-rich repeat immune proteins
Cited by: 58
Author(s): Robert M. Waterhouse, Michael Povelones, George K. Christophides
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-11-632

Expression, tandem repeat copy number variation and stability of four macrosatellite arrays in the human genome
Cited by: 37
Author(s): Deanna C. Tremblay, Graham Alexander, Shawn C. Moseley, Brian P. Chadwick
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-9-39

SNPs and Hox gene mapping in Ciona intestinalis
Cited by: 9
Author(s): Luigi Caputi, Marco Borra, Nikos Andreakis, Elio Biffali, Paolo Sordino
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2164-13-708

Identification of 3′ gene ends using transcriptional and genomic conservation across vertebrates
Cited by: 5
Author(s): Marcos Morgan, Alessandra Iaconcig, Andrés F. Muro
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2164-12-482

Sequence comparison of prefrontal cortical brain transcriptome from a tame and an aggressive silver fox (Vulpes vulpes)
Cited by: 50
Author(s): Anna V. Kukekova, Jennifer L. Johnson, Clotilde Teiling, Lewyn Li, I. N. Oskina, Anastasiya V. Kharlamova, Р. Г. Гулевич, Ravee Padte, Michael M. Dubreuil, Anastasiya V. Vladimirova, Darya V. Shepeleva, С. Г. Шихевич, Qi Sun, Lalit Ponnala, Svetlana V. Temnykh, Lyudmila N. Trut, Gregory M. Acland
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12878-018-0113-4

Identification of a novel mutation in the factor VIII gene causing severe haemophilia A
Cited by: 3
Author(s): Sara Konstantin Nissen, Alex Lund Laursen, Lone Hvitfeldt Poulsen, Trine H. Mogensen
Software Mentions: 1
Published: about 8 years ago

10.1186/s12865-018-0257-9

The expression analysis of Fra-1 gene and IL-11 protein in Iranian patients with ulcerative colitis
Cited by: 16
Author(s): Milad Sabzevary‐Ghahfarokhi, Mojtaba Shohan, Hedayatollah Shirzad, Ghorbanali Rahimian, Nader Bagheri, Amin Soltani, Fatemeh Deris, Mahdi Ghatrehsamani, Ehsan Razmara
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2172-12-54

Regulation of IL-2 gene expression by Siva and FOXP3 in human T cells
Cited by: 9
Author(s): Virginia K. Hench, Lishan Su
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12879-018-3153-2

Polymorphisms in the Th17 cell-related RORC gene are associated with spontaneous clearance of HCV in Chinese women
Cited by: 2
Author(s): Zhe Xie, Yuantao Li, Long Lü, Hua Liang, Weiping Cai, Tao Shen
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2350-12-68

Rapid screening for chromosomal aneuploidies using array-MLPA
Cited by: 16
Author(s): Jingbin Yan, Miao Xu, Chenglong Xiong, Dong‐Ying Zhou, Zhaorui Ren, Ying Huang, Monique Mommersteeg, Rinie van Beuningen, Ying Tai Wang, Shixiu Liao, Fanyi Zeng, Ying Wu, Yi‐Tao Zeng
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2350-14-116

Genetic mapping of high caries experience on human chromosome 13
Cited by: 18
Author(s): Érika Calvano Küchler, Kathleen Deeley, Bao Ho, Samantha Linkowski, Chelsea Meyer, Jacqueline Noel, M. Zahir Kouzbari, Mariana Bezamat, José Mauro Granjeiro, Leonardo Santos Antunes, Fernanda Volpe de Abreu, Marcelo C. Costa, Patrícia Nivoloni Tannure, Figen Seymen, Mine Koruyucu, Aslı Patır, Juan C. Mereb, Fernando A. Poletta, Eduardo E. Castilla, Iêda M. Orioli, Mary L. Marazita, Alexandre R. Vieira
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2350-8-17

Genetic mapping of a new heart rate QTL on chromosome 8 of spontaneously hypertensive rats
Cited by: 13
Author(s): Gustavo J. J. Silva, Alexandre C. Pereira, E M Krieger, José Eduardo Krieger
Software Mentions: 1
Published: over 19 years ago

10.1186/1471-2350-8-S1-S14

Genome-wide association with bone mass and geometry in the Framingham Heart Study
Cited by: 240
Author(s): Douglas P. Kiel, Serkalem Demissie, Josée Dupuis, Kathryn L. Lunetta, Joanne M. Murabito, David Karasik
Software Mentions: 1
Published: over 19 years ago

10.1186/s12881-019-0905-9

MTHFR and F5 genetic variations have association with preeclampsia in Pakistani patients: a case control study
Cited by: 14
Author(s): Feriha Fatima Khidri, Yar Muhammad Waryah, Faiza Kamran Ali, Hina Shaikh, Ikram Din Ujjan, Ali Muhammad Waryah
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2350-8-S1-S15

Genetic correlates of brain aging on MRI and cognitive test measures: a genome-wide association and linkage analysis in the Framingham study
Cited by: 185
Author(s): Sudha Seshadri, Anita L. DeStefano, Rhoda Au, Joseph M. Massaro, Alexa Beiser, Margaret Kelly-Hayes, Carlos S. Kase, Ralph B. D’Agostino, Charles DeCarli, Larry D. Atwood, Philip A. Wolf
Software Mentions: 1
Published: about 19 years ago

10.1186/s12881-014-0128-z

Molecular and clinical analyses of 16q24.1 duplications involving FOXF1 identify an evolutionarily unstable large minisatellite
Cited by: 11
Author(s): Avinash V. Dharmadhikari, Tomasz Gambin, Przemysław Szafrański, Wenjian Cao, Frank J. Probst, Weihong Jin, Ping Fang, Krzysztof Gogolewski, Anna Gambin, Jaya K. George‐Abraham, Sailaja Golla, F. Boidein, Bénédicte Duban‐Bedu, Bruno Delobel, Joris Andrieux, Kerstin Becker, Elke Holinski‐Feder, Sau Wai Cheung, Paweł Stankiewicz
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12920-019-0491-x

FTO haplotyping underlines high obesity risk for European populations
Cited by: 16
Author(s): Vladimir N. Babenko, Roman O. Babenko, Junaid Gamieldien, A. L. Markel
Software Mentions: 1
Published: over 7 years ago

10.1186/1755-8794-1-19

Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis
Cited by: 26
Author(s): Eleni M. Tomazou, Vardhman K. Rakyan, Grégory Lefebvre, Robert Andrews, Peter Ellis, David Jackson, Cordelia Langford, Matthew D. Francis, Liselotte Bäckdahl, Marcos Mateo Miretti, Penny Coggill, Diego Ottaviani, Denise Sheer, Adele Murrell, Stephan Beck
Software Mentions: 1
Published: over 18 years ago

10.1186/1755-8794-2-35

Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing
Cited by: 40
Author(s): Sanne Nygaard, Anders Jacobsen, Morten Lindow, Jens Eriksen, Eva Balslev, Henrik Flyger, Niels Tolstrup, Søren Møller, Anders Krogh, Thomas Litman
Software Mentions: 1
Published: about 17 years ago

10.1186/s12920-021-00998-9

Correlating genomic copy number alterations with clinicopathologic findings in 75 cases of hepatocellular carcinoma
Cited by: 4
Author(s): Gang Peng, Hongyan Chai, Weizhen Ji, Yufei Lu, Sheng‐Ming Wu, Hongyu Zhao, Peining Li, Qiping Hu
Software Mentions: 1
Published: over 5 years ago

10.1186/s12920-015-0105-1

Integrative epigenomic and genomic filtering for methylation markers in hepatocellular carcinomas
Cited by: 23
Author(s): Jing Shen, Clare V. LeFave, Iryna Sirosh, Abby B. Siegel, Benjamin Tycko, Regina M. Santella
Software Mentions: 1
Published: about 11 years ago

10.1186/s12920-019-0527-2

Targeted next generation sequencing as a tool for precision medicine
Cited by: 51
Author(s): Markus Gulilat, Tyler Lamb, Wendy A. Teft, Jian Wang, Jacqueline S. Dron, John F. Robinson, Rommel G. Tirona, Robert A. Hegele, Richard B. Kim, Ute I. Schwarz
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2180-9-S1-S5

Programmed cell death in host-symbiont associations, viewed through the Gene Ontology
Cited by: 14
Author(s): Marcus C. Chibucos, Candace Whitmer Collmer, Trudy Torto-Alalibo, Michelle Gwinn-Giglio, Magdalen Lindeberg, Donghui Li, Brett M. Tyler
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2199-10-7

Multiple RNAs from the mouse carboxypeptidase M locus: functional RNAs or transcription noise?
Cited by: 3
Author(s): Alessander de Oliveira Guimarães, Fabiana Louise Motta, Viviane S. Alves, Beatriz A. Castilho, João Bosco Pesquero
Software Mentions: 1
Published: over 17 years ago

10.1186/s12867-017-0092-1

Early growth response protein 1 regulates promoter activity of α-plasma membrane calcium ATPase 2, a major calcium pump in the brain and auditory system
Cited by: 6
Author(s): Rebecca R. Minich, Jin Li, Bruce L. Tempel
Software Mentions: 1
Published: over 9 years ago

10.1186/s12867-018-0117-4

Molecular analysis of NPAS3 functional domains and variants
Cited by: 13
Author(s): Leiah M. Luoma, Fred B. Berry
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12860-020-00336-4

Reduced translation efficiency due to novel splicing variants in 5′ untranslated region and identification of novel cis-regulatory elements in canine and human BRCA2
Cited by: 2
Author(s): Yasunaga Yoshikawa, Hajime Kozuma, Masami Morimatsu, Kenji Sugawara, Koichi Orino
Software Mentions: 1
Published: over 5 years ago

10.1186/s12891-015-0531-4

A genome-wide association study of copy-number variation identifies putative loci associated with osteoarthritis in Koreans
Cited by: 9
Author(s): Sanghoon Moon, Bhumsuk Keam, Mi Yeong Hwang, Young Lee, Suyeon Park, Ji Hee Oh, Yeon‐Jung Kim, Heun‐Sik Lee, Nam Hee Kim, Young Jin Kim, Dong-Hyun Kim, Bok‐Ghee Han, Bong-Jo Kim, Juyoung Lee
Software Mentions: 1
Published: over 11 years ago

10.1186/s12882-015-0028-2

A global overview of renal registries: a systematic review
Cited by: 69
Author(s): Frank Xiaoqing Liu, Peter Rutherford, Karen E. Smoyer‐Tomic, Sarah Prichard, Suzanne Laplante
Software Mentions: 1
Published: over 11 years ago

10.1186/s12882-019-1471-2

Investigation of the variants at the binding site of inflammatory transcription factor NF-κB in patients with end-stage renal disease
Cited by: 4
Author(s): Jung-Mou Yang, Wei-Teing Chen, Meng-Chang Lee, Wen‐Hui Fang, Yu‐Juei Hsu, Chin-Lin, Chen Hc, Hsueh-Lu Chang, Chuan-Mu Chen, Min-Yu Tu, Chien-Wei Kuo, Yuan-Hau Lin, Po-Jen Hsiao, Sui-Lung Su
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2202-12-46

An evolutionary conserved region (ECR) in the human dopamine receptor D4 gene supports reporter gene expression in primary cultures derived from the rat cortex
Cited by: 5
Author(s): Ursula M. Paredes, Vivien J. Bubb, K. Haddley, Gabriele A. Macho, John P. Quinn
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2202-7-12

Sex-dependent gene expression in early brain development of chicken embryos
Cited by: 57
Author(s): Birger Scholz, Kim Kultima, Anna Mattsson, J. Axelsson, Björn Brunström, Krister Halldin, Michael Stigson, Lennart Dencker
Software Mentions: 1
Published: over 20 years ago

10.1186/1471-2202-14-68

LOC689986, a unique gene showing specific expression in restricted areas of the rodent neocortex
Cited by: 3
Author(s): Kari Merete Ersland, Bjarte Håvik, Johanne Egge Rinholm, Vidar Gundersen, Carl Trygve Stansberg, Vidar M. Steen
Software Mentions: 1
Published: about 13 years ago

10.1186/s12886-020-01603-w

Optic nerve coloboma as extension of the phenotype of 22q11.23 duplication syndrome: a case report
Cited by: 0
Author(s): Claudia Valencia-Peña, Paula Jiménez-Sanchez, Wilmar Saldarriaga, César Payán‐Gómez
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2415-10-27

Expression of connexin genes in the human retina
Cited by: 34
Author(s): Goran Söhl, Antonia M. Joussen, Norbert Kociok, Klaus Willecke
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12870-015-0589-z

Genome-wide association mapping reveals novel sources of resistance to northern corn leaf blight in maize
Cited by: 52
Author(s): Junqiang Ding, Farhan Ali, Gengshen Chen, Huihui Li, George Mahuku, Ning Yang, Luis Narro, Cosmos Magorokosho, Dan Makumbi, Jianbing Yan
Software Mentions: 1
Published: about 11 years ago

10.1186/s12870-018-1282-9

Ginseng Genome Database: an open-access platform for genomics of Panax ginseng
Cited by: 64
Author(s): Murukarthick Jayakodi, Beom-Soon Choi, Sang-Choon Lee, Nam Hoon Kim, Jee Young Park, Woojong Jang, Meiyappan Lakshmanan, Shobhana V. Gnanapanditha Mohan, Dong-Yup Lee, Tae-Jin Yang
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2229-12-229

The tomato RLK superfamily: phylogeny and functional predictions about the role of the LRRII-RLK subfamily in antiviral defense
Cited by: 112
Author(s): Tetsu Sakamoto, Michihito Deguchi, Otávio J. B. Brustolini, Anésia A. Santos, Fabyano F. Silva, Elizabeth P. B. Fontes
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12870-015-0685-0

A detailed expression map of the PIN1 auxin transporter in Arabidopsis thaliana root
Cited by: 71
Author(s): N. A. Omelyanchuk, Василина Владимировна Коврижных, Е. А. Ощепкова, Taras Pasternak, Klaus Palme, В. В. Миронова
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2229-7-40

A comparative map viewer integrating genetic maps for Brassica and Arabidopsis
Cited by: 25
Author(s): Geraldine A. C. Lim, Erica Jewell, Li Xi, Tim Erwin, Christopher G. Love, Jacqueline Batley, Germán Spangenberg, David Edwards
Software Mentions: 1
Published: about 19 years ago

10.1186/s12870-018-1275-8

Genome-wide (ChIP-seq) identification of target genes regulated by BdbZIP10 during paraquat-induced oxidative stress
Cited by: 14
Author(s): Ruth C. Martin, Kelly J. Vining, James E. Dombrowski
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2229-11-57

Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine
Cited by: 103
Author(s): Nilo Mejía, Braulio Soto, Marcos Guerrero, Ximena Casanueva, Cléa Houel, María Miccono, Rodrigo Ramos, Loïc Le Cunff, Jean Michel Boursiquot, Patricio Hinrichsen, Anne-Françoise Adam-Blondon
Software Mentions: 1
Published: over 15 years ago

10.1186/s12870-018-1406-2

AgriSeqDB: an online RNA-Seq database for functional studies of agriculturally relevant plant species
Cited by: 14
Author(s): Andrew Robinson, Muluneh Tamiru, Rachel Salby, Clayton Bolitho, Andrew Williams, Simon Huggard, Eva Fisch, Kathryn Unsworth, James Whelan, Mathew G. Lewsey
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2229-12-208

Identification of genes involved in the ACC-mediated control of root cell elongation in Arabidopsis thaliana
Cited by: 59
Author(s): Marios Nektarios Markakis, Tinne De Cnodder, Michał Lewandowski, Damien Simon, Agnieszka Karolina Boron, Daria Balcerowicz, Thanaa Doubbo, Ludivine Taconnat, Jean-Pierre Renou, Hermanus Höfte, Jean‐Pierre Verbelen, Kris Vissenberg
Software Mentions: 1
Published: almost 14 years ago

10.1186/1756-0500-2-199

Collection of Macaca fascicularis cDNAs derived from bone marrow, kidney, liver, pancreas, spleen, and thymus
Cited by: 11
Author(s): Naoki Osada, Makoto Hirata, Reiko Tanuma, Yutaka Suzuki, Sumio Sugano, Keiji Terao, Jun Kusuda, Yosuke Kameoka, Katsuyuki Hashimoto, Ichiro Takahashi
Software Mentions: 1
Published: over 17 years ago

10.1186/1756-0500-7-116

Isolation and sequencing of swine carbonic anhydrase VI, an enzyme expressed in the swine kidney
Cited by: 1
Author(s): Toshiho Nishita, Juro Yatsu, Masaru Murakami, Shino Kamoshida, Kensuke Orito, Nobutsune Ichihara, Kazuyoshi Arishima, Hideharu Ochiai
Software Mentions: 1
Published: over 12 years ago

10.1186/1756-0500-6-179

What google maps can do for biomedical data dissemination: examples and a design study
Cited by: 8
Author(s): Radu Jianu, David H. Laidlaw
Software Mentions: 1
Published: over 13 years ago

10.1186/s41927-020-00142-7

Room for improvement in non-pharmacological systemic sclerosis care? — a cross-sectional online survey of 650 patients
Cited by: 7
Author(s): J.K. Stöcker, Madelon C. Vonk, F.H.J. van den Hoogen, M.W.G. Nijhuis-van der Sanden, Julia Spierings, J. Bart Staal, Ton Satink, C.H.M. van den Ende
Software Mentions: 1
Published: about 6 years ago

10.1186/1752-0509-6-S3-S15

Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data
Cited by: 39
Author(s): Yu Liu, Sean Maxwell, Tao Feng, Xiaofeng Zhu, Robert C. Elston, Mehmet Koyutürk, Mark R. Chance
Software Mentions: 1
Published: almost 14 years ago

10.1186/1752-0509-6-124

A simple knowledge-based mining method for exploring hidden key molecules in a human biomolecular network
Cited by: 1
Author(s): Shingo Tsuji, Sigeo Ihara, Hiroyuki Aburatani
Software Mentions: 1
Published: almost 14 years ago

10.1186/1752-0509-6-S3-S20

A semantic proteomics dashboard (SemPoD) for data management in translational research
Cited by: 7
Author(s): Catherine P. Jayapandian, Meng Zhao, Rob M. Ewing, Guo Qiang Zhang, Satya S. Sahoo
Software Mentions: 1
Published: almost 14 years ago

10.1186/1752-0509-4-10

A Novel microRNA and transcription factor mediated regulatory network in schizophrenia
Cited by: 150
Author(s): An‐Yuan Guo, Jingjing Sun, Peilin Jia, Zhongming Zhao
Software Mentions: 1
Published: over 16 years ago

10.1186/1472-6874-7-5

DNA microarray data integration by ortholog gene analysis reveals potential molecular mechanisms of estrogen-dependent growth of human uterine fibroids
Cited by: 28
Author(s): Tao Wei, Andrew G. Geiser, Hui-Rong Qian, Chen Su, Leah M. Helvering, Nalini H Kulkarini, Jianyong Shou, Mathias N'Cho, Henry U. Bryant, Jude E. Onyia
Software Mentions: 1
Published: over 19 years ago

10.1016/j.bbadis.2013.10.008

Mutation of the human mitochondrial phenylalanine-tRNA synthetase causes infantile-onset epilepsy and cytochrome c oxidase deficiency
Cited by: 62
Author(s): Abdulraheem Ali Almalki, Charlotte L. Alston, Alasdair Parker, Ingrid Simonic, Sarju G. Mehta, Langping He, Mojgan Reza, Jorge M. A. Oliveira, Robert N. Lightowlers, Robert McFarland, Robert W. Taylor, Zofia M.A. Chrzanowska-Lightowlers
Software Mentions: 1
Published: over 12 years ago

10.1093/bioinformatics/btx441

Reactome enhanced pathway visualization
Cited by: 129
Author(s): Konstantinos Sidiropoulos, Guilherme Viteri, Cristoffer Sevilla, S Jupe, Marissa Webber, M Orlic-Milacic, Bijay Jassal, Bruce May, Veronica Shamovsky, Corina Duenas, Karen Rothfels, Lisa Matthews, Heeyeon Song, Lincoln Stein, Robin Haw, Peter D’Eustachio, Peipei Ping, Henning Hermjakob, Antonio Fabregat
Software Mentions: 1
Published: about 9 years ago

10.1093/bioinformatics/btw547

Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank
Cited by: 14
Author(s): Andreas Prlić, Tara Kalro, Roshni Bhattacharya, Cole H. Christie, S.K. Burley, Peter W. Rose
Software Mentions: 1
Published: about 10 years ago

10.1093/bioinformatics/bty922

High-complexity regions in mammalian genomes are enriched for developmental genes
Cited by: 2
Author(s): Anton Pirogov, Peter Pfaffelhuber, Angelika Börsch-Haubold, Bernhard Haubold
Software Mentions: 1
Published: almost 8 years ago

10.6026/97320630015467

Molecular modelling and docking of Mus musculus HMGB1 inflammatory protein with CGA
Cited by: 3
Author(s): Alok Tripathi, Kriti Shrinet, Vinay Kumar Singh, Arvind Kumar
Software Mentions: 1
Published: about 7 years ago

10.1186/1745-6150-2-7

Cited by: 18
Author(s): Albert de Roos
Software Mentions: 1
Published: over 19 years ago

10.1186/s13062-017-0180-7

TFAP2A is a component of the ZEB1/2 network that regulates TGFB1-induced epithelial to mesenchymal transition
Cited by: 23
Author(s): Yoana Dimitrova, Andreas J. Gruber, Nitish Mittal, Souvik Ghosh, Beatrice Dimitriades, Daniel Mathow, William Aaron Grandy, Gerhard Christofori, Mihaela Zavolan
Software Mentions: 1
Published: over 9 years ago

10.1242/bio.028498

A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken model
Cited by: 7
Author(s): Mickael Orgeur, Marvin Martens, Stefan T. Börno, Bernd Timmermann, Delphine Duprez, Sigmar Stricker
Software Mentions: 1
Published: over 9 years ago

10.1242/bio.019067

Reprogrammable CRISPR/Cas9-based system for inducing site-specific DNA methylation
Cited by: 213
Author(s): James I. McDonald, Hamza Celik, Lisa E. Rois, Gregory Fishberger, Tolison Fowler, Ryan Rees, Ashley C. Kramer, Andrew Martens, John Edwards, Grant A. Challen
Software Mentions: 1
Published: over 10 years ago

10.1016/j.biopsych.2011.01.037

Sex-Specific Role for Adenylyl Cyclase Type 7 in Alcohol Dependence
Cited by: 18
Author(s): Sylvane Desrivières, Sergey P. Pronko, Anbarasu Lourdusamy, Francesca Ducci, Paula L. Hoffman, Norbert Wodarz, Monika Ridinger, Marcella Rietschel, Diana Zélénika, Mark Lathrop, Günter Schumann, Boris Tabakoff
Software Mentions: 1
Published: over 15 years ago

10.1016/j.biopsych.2011.11.030

A Polymorphism Associated with Depressive Disorders Differentially Regulates Brain Derived Neurotrophic Factor Promoter IV Activity
Cited by: 51
Author(s): Benjamin Hing, Scott Davidson, Marrisa Lear, Gerome Breen, John P. Quinn, Peter McGuffin, Alasdair MacKenzie
Software Mentions: 1
Published: over 14 years ago

10.3390/biology2010233

Cell-Type Specific Determinants of NRAMP1 Expression in Professional Phagocytes
Cited by: 10
Author(s): Mathieu Cellier
Software Mentions: 1
Published: over 13 years ago

10.1186/s40364-021-00296-7

SMAD1 as a biomarker and potential therapeutic target in drug-resistant multiple myeloma
Cited by: 8
Author(s): Jian Wu, Min Zhang, Omar Faruq, Eldad Zacksenhaus, Wen-Ming Chen, Aijun Liu, Hong Chang
Software Mentions: 1
Published: about 5 years ago

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Papers Mentioning browser 2,125