pypi: browser | Projects | Ecosyste.ms: Papers

10.1186/1471-2164-15-343

XSAnno: a framework for building ortholog models in cross-species transcriptome comparisons
Cited by: 26
Author(s): Ying Zhu, Mingfeng Li, André M. M. Sousa, Nenad Šestan
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0047157

Distinct Distribution of Ectopically Expressed Histone Variants H2A.Bbd and MacroH2A in Open and Closed Chromatin Domains
Cited by: 19
Author(s): E. S. Ioudinkova, Ana Barat, Andrey Pichugin, Eva Markovà, Ilya Sklyar, Iryna Pirozhkova, Chloé Robin, Marc Lipinski, Vasily Ogryzko, Yegor S. Vassetzky, Sergey V. Razin
Software Mentions: 2
Published: about 14 years ago

10.1002/humu.22842

Facilitating Collaboration in Rare Genetic Disorders Through Effective Matchmaking in DECIPHER
Cited by: 35
Author(s): Eleni A. Chatzimichali, Simon Brent, Benjamin Hutton, Daniel Perrett, Caroline F. Wright, A. Paul Bevan, Matthew E. Hurles, Helen V. Firth, Ganesh Swaminathan
Software Mentions: 2
Published: about 11 years ago

10.3389/fgene.2020.533052

Discovery of Genomic Characteristics and Selection Signatures in Southern Chinese Local Cattle
Cited by: 12
Author(s): Yuqiang Liu, Lingyang Xu, Yang Liu, Guangshan Zhao, Junya Li, Dewu Liu, Yaokun Li
Software Mentions: 2
Published: almost 6 years ago

10.1002/humu.22471

A 129-kb Deletion on Chromosome 12 Confers Substantial Protection Against Rheumatoid Arthritis, Implicating the GeneSLC2A3
Cited by: 21
Author(s): Colin Veal, Katherine Reekie, Johnny C. Lorentzen, Peter K. Gregersen, Leonid Padyukov, Anthony J. Brookes
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12864-015-1713-z

Genomic copy number variation in Mus musculus
Cited by: 37
Author(s): M Elizabeth O Locke, Maja Milojevic, Susan T Eitutis, Nisha Patel, Andrea E Wishart, Mark Daley, Kathleen A. Hill
Software Mentions: 2
Published: over 11 years ago

10.1186/s13100-018-0142-3

Variation in proviral content among human genomes mediated by LTR recombination
Cited by: 63
Author(s): Jainy Thomas, Hervé Perron, Cédric Feschotte
Software Mentions: 2
Published: almost 8 years ago

10.3389/fgene.2019.01190

Whole Genome Resequencing Reveals Selection Signatures Associated With Important Traits in Ethiopian Indigenous Goat Populations
Cited by: 6
Author(s): Haile Berihulay, Yefang Li, Berihu Gebrekidan, Gebremedhin Gebreselassie, Xuexue Liu, Lin Jiang, Yue Ma
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0072670

A Minimal Set of Tissue-Specific Hypomethylated CpGs Constitute Epigenetic Signatures of Developmental Programming
Cited by: 20
Author(s): Alejandro Colaneri, Tianyuan Wang, Vijayakanth Pagadala, Jaya Kittur, Nickolas G. Staffa, Shyamal D. Peddada, Elvira Isganaitis, Mary Elizabeth Patti, Lutz Birnbaumer
Software Mentions: 2
Published: about 13 years ago

10.3389/fgene.2013.00092

The Growing Importance of CNVs: New Insights for Detection and Clinical Interpretation
Cited by: 52
Author(s): Armand Valsesia, Aurélien Macé, Sébastien Jacquemont, Jacques S. Beckmann, Zoltán Kutalik
Software Mentions: 2
Published: almost 14 years ago

10.1186/1471-2164-13-424

H3K9 and H3K14 acetylation co-occur at many gene regulatory elements, while H3K14ac marks a subset of inactive inducible promoters in mouse embryonic stem cells
Cited by: 377
Author(s): Krishanpal Karmodiya, Arnaud R Krebs, Mustapha Oulad‐Abdelghani, Hiroshi Kimura, László Tora
Software Mentions: 2
Published: about 14 years ago

10.1186/1471-2164-11-205

Detection of novel 3' untranslated region extensions with 3' expression microarrays
Cited by: 14
Author(s): Lieven Thorrez, Léon-Charles Tranchevent, Hui-Wen Chang, Yves Moreau, Frans Schuit
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0071691

Differential DNA Methylation Regions in Cytokine and Transcription Factor Genomic Loci Associate with Childhood Physical Aggression
Cited by: 61
Author(s): Nadine Provençal, Matthew Suderman, Doretta Caramaschi, Dongsha Wang, Michael Hallett, Frank Vitaro, Richard E. Tremblay, Moshe Szyf
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0038240

Genome-Wide Study of Gene Variants Associated with Differential Cardiovascular Event Reduction by Pravastatin Therapy
Cited by: 31
Author(s): Dov Shiffman, Stella Trompet, Judy Z. Louie, Charles M. Rowland, Joseph J. Catanese, Olga A. Iakoubova, Todd G. Kirchgessner, Rudi G. J. Westendorp, Anton J. M. de Craen, P. Eline Slagboom, Brendan M. Buckley, David J. Stott, Naveed Sattar, James J. Devlin, Christopher J. Packard, Ian Ford, Frank M. Sacks, J. Wouter Jukema
Software Mentions: 2
Published: over 14 years ago

10.1002/humu.22594

Genetic Variations and Diseases in UniProtKB/Swiss‐Prot: The Ins and Outs of Expert Manual Curation
Cited by: 49
Author(s): Maria Livia Famiglietti, Anne Estreicher, Arnaud Gos, Jerven Bolleman, Sébastien Géhant, Lionel Breuza, Alan Bridge, Sylvain Poux, Nicole Redaschi, Lydie Bougueleret, Ioannis Xénarios
Software Mentions: 2
Published: over 12 years ago

10.1186/s12859-018-2219-x

mySyntenyPortal: an application package to construct websites for synteny block analysis
Cited by: 6
Author(s): Jongin Lee, Daehwan Lee, Mikang Sim, Daehong Kwon, Ju‐Yeon Kim, Yun Woong Ko, Jaebum Kim
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2407-10-329

Identification of target genes for wild type and truncated HMGA2 in mesenchymal stem-like cells
Cited by: 25
Author(s): Jörn Henriksen, Marianne Stabell, Leonardo A. Meza‐Zepeda, Silje Au Lauvrak, Moustapha Kassem, Ola Myklebost
Software Mentions: 2
Published: over 16 years ago

10.1093/humrep/deab099

Exome sequencing reveals variants in known and novel candidate genes for severe sperm motility disorders
Cited by: 28
Author(s): Manon S Oud, Brendan J Houston, Ludmila Voložonoka, Francesco K. Mastrorosa, Giles Holt, Bilal Alobaidi, P F deVries, Galuh D.N. Astuti, Liliana Ramos, Robert I McLachlan, Moira K O'Bryan, Joris A. Veltman, H Chemes, Harsh Sheth
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0007479

Probe-Level Analysis of Expression Microarrays Characterizes Isoform-Specific Degradation during Mouse Oocyte Maturation
Cited by: 29
Author(s): Jesse Salisbury, Keith W. Hutchison, Karen Wigglesworth, John J. Eppig, Joel H. Graber
Software Mentions: 2
Published: about 17 years ago

10.1186/1471-2164-15-765

Liver transcriptome analysis in gilthead sea bream upon exposure to low temperature
Cited by: 80
Author(s): Alba Nicoletta Mininni, Massimo Milan, Serena Ferraresso, T. Petochi, Patrizia Di Marco, G. Marino, Silvia Livi, Chiara Romualdi, Luca Bargelloni, Tomaso Patarnello
Software Mentions: 2
Published: about 12 years ago

10.1186/1475-2867-5-29

Epigenetic inactivation and aberrant transcription of CSMD1 in squamous cell carcinoma cell lines
Cited by: 29
Author(s): Toni M. Richter, Benton D. Tong, Steven B. Scholnick
Software Mentions: 2
Published: about 21 years ago

10.3389/fgene.2019.01305

A Pretraining-Retraining Strategy of Deep Learning Improves Cell-Specific Enhancer Predictions
Cited by: 11
Author(s): Xiaohui Niu, Kun Yang, Ge Zhang, Zhiquan Yang, Xuehai Hu
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2021.641620

Gene Expression Modification by an Autosomal Inversion Associated With Three Male Mating Morphs
Cited by: 8
Author(s): Jasmine Lopez Loveland, David B. Lank, Clemens Küpper
Software Mentions: 2
Published: over 5 years ago

10.1186/2040-2392-4-48

Genetic variation in GABRB3 is associated with Asperger syndrome and multiple endophenotypes relevant to autism
Cited by: 43
Author(s): Varun Warrier, Simon Baron‐Cohen, Bhismadev Chakrabarti
Software Mentions: 2
Published: almost 14 years ago

10.1186/s12915-019-0702-0

Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants
Cited by: 18
Author(s): Isidro Álvarez‐Escribano, Christoph Sasse, Jin Woo Bok, Hyunsoo Na, Mojgan Amirebrahimi, Anna Lipzen, Wendy Schackwitz, Joel Martin, Kerrie Barry, Gabriel Gutiérrez, Sara Cea-Sánchez, Ana T. Marcos, Igor V. Grigoriev, Nancy P. Keller, Gerhard H. Braus, David Cánovas
Software Mentions: 2
Published: about 7 years ago

10.1186/1471-2164-15-216

The Xenopusalcohol dehydrogenase gene family: characterization and comparative analysis incorporating amphibian and reptilian genomes
Cited by: 5
Author(s): Emma Borràs, Ricard Albalat, Gregg Duester, Xavier Parés, Jaume Farrés
Software Mentions: 2
Published: over 12 years ago

10.1093/molbev/msab050

The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects
Cited by: 46
Author(s): Parul Johri, Kellen Riall, Hannes Becher, Laurent Excoffier, Brian Charlesworth, Jeffrey D. Jensen
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2017.00170

HOTAIR: A Promising Long Non-coding RNA with Potential Role in Breast Invasive Carcinoma
Cited by: 22
Author(s): Niloofar Avazpour, Mohammadreza Hajjari, Maryam Tahmasebi Birgani
Software Mentions: 2
Published: almost 9 years ago

10.3389/fgene.2013.00209

A comprehensive promoter landscape identifies a novel promoter for CD133 in restricted tissues, cancers, and stem cells
Cited by: 9
Author(s): Ramakrishna Sompallae, Oliver Hofmann, Christopher A. Maher, Craig Gedye, Andreas Behren, Morana Vitezic, Carsten O. Daub, Sylvie Devalle, Otávia L. Caballero, Piero Carninci, Yoshihide Hayashizaki, Elizabeth R. Lawlor, Jonathan Cebon, Winston Hide
Software Mentions: 2
Published: almost 14 years ago

10.1093/molbev/msaa296

dbCNS: A New Database for Conserved Noncoding Sequences
Cited by: 3
Author(s): Jun Inoue, Naruya Saitou
Software Mentions: 2
Published: almost 6 years ago

10.1186/1471-2148-9-85

Origin and evolution of the RIG-I like RNA helicase gene family
Cited by: 224
Author(s): Jun Zou, Ming Chang, Pin Nie, Chris J. Secombes
Software Mentions: 2
Published: almost 18 years ago

10.1186/1471-2164-15-619

Metabolic pathways for the whole community
Cited by: 51
Author(s): Niels W. Hanson, Kishori M. Konwar, Alyse K. Hawley, Tomer Altman, Peter D. Karp, Steven J. Hallam
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2164-14-84

An integrated approach to characterize transcription factor and microRNA regulatory networks involved in Schwann cell response to peripheral nerve injury
Cited by: 34
Author(s): Li‐Wei Chang, Andreu Viader, Nobish Varghese, Jacqueline E. Payton, Jeffrey Milbrandt, Rakesh Nagarajan
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0126966

Retrotransposon-Derived Promoter of Mammalian Aebp2
Cited by: 1
Author(s): Hana Kim, Arundhati Bakshi, Joomyeong Kim
Software Mentions: 2
Published: over 11 years ago

10.1038/s41416-020-0907-6

BRD4 promotes metastatic potential in oral squamous cell carcinoma through the epigenetic regulation of the MMP2 gene
Cited by: 12
Author(s): Takaya Yamamoto, Akiyuki Hirosue, Masafumi Nakamoto, Ryoji Yoshida, Junki Sakata, Yuichiro Matsuoka, Katsunobu Kawahara, Yuka Nagao, Masashi Nagata, Nobuhiro Takahashi, Akimitsu Hiraki, Masanori Shinohara, Mitsuyoshi Nakao, Noriko Saitoh, Hideki Nakayama
Software Mentions: 2
Published: over 6 years ago

10.1093/molbev/msz060

Emergence of a Thrombospondin Superfamily at the Origin of Metazoans
Cited by: 5
Author(s): Deborah K. Shoemark, Berenice Ziegler, Hiroshi Watanabe, Jennifer Strompen, Richard P. Tucker, Suat Özbek, Josephine C. Adams
Software Mentions: 2
Published: over 7 years ago

10.3390/genes12020221

Evaluation of OpenArray™ as a Genotyping Method for Forensic DNA Phenotyping and Human Identification
Cited by: 7
Author(s): Michele Reni, Giulio Puleri, Valeria Errichiello, L Manzo, Laura Luzzi, Saverio Potenza, Claudia Strafella, Cristina Peconi, Fabio Nicastro, Valerio Caputo, Emiliano Giardina
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0250669

Distinct expression of select and transcriptome-wide isolated 3’UTRs suggests critical roles in development and transition states
Cited by: 1
Author(s): Shaoyi Ji, Zihui Yang, Leonardi Gozali, Thomas Kenney, Arif Kocabas, Carolyn Jinsook Park, Mary Hynes
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0128916

An Efficient Method for Identifying Gene Fusions by Targeted RNA Sequencing from Fresh Frozen and FFPE Samples
Cited by: 41
Author(s): Jonathan Scolnick, Michelle Dimon, I‐Ching Wang, Stephanie C. Huelga, Douglas A. Amorese
Software Mentions: 2
Published: over 11 years ago

10.1186/s12874-016-0164-9

ODMedit: uniform semantic annotation for data integration in medicine based on a public metadata repository
Cited by: 28
Author(s): Martin Dugas, Alexandra Meidt, Philipp Neuhaus, Michael Storck, Julian Varghese
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2164-13-394

Convergent and divergent evolution of genomic imprinting in the marsupial Monodelphis domestica
Cited by: 23
Author(s): Radhika Das, Nathan Anderson, Mary Ellen Koran, Jennifer R. Weidman, Tarjei S. Mikkelsen, Michael Kamal, Susan K. Murphy, Kerstin Linblad-Toh, John M. Greally, Randy L. Jirtle
Software Mentions: 2
Published: about 14 years ago

10.1186/1471-2105-13-253

G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes
Cited by: 15
Author(s): Danielle G. Lemay, William Martin, Angie S. Hinrichs, Monique Rijnkels, J. Bruce German, Ian F Korf, Katherine S. Pollard
Software Mentions: 2
Published: about 14 years ago

10.1186/1476-4598-8-42

The novel RASSF6 and RASSF10 candidate tumour suppressor genes are frequently epigenetically inactivated in childhood leukaemias
Cited by: 105
Author(s): Luke B. Hesson, Thomas L. Dunwell, Wendy N. Cooper, Daniel Catchpoole, A.T. Brini, Raffaella Chiaramonte, Mike Griffiths, Andrew D. Chalmers, Eamonn R. Maher, Farida Latif
Software Mentions: 2
Published: over 17 years ago

10.3390/genes12060870

Age Prediction of Human Based on DNA Methylation by Blood Tissues
Cited by: 5
Author(s): Jiansheng Zhang, Hongli Fu, Yan Xu
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0117415

A Non-Parametric Peak Calling Algorithm for DamID-Seq
Cited by: 5
Author(s): Renhua Li, Leonie U. Hempel, Tingbo Jiang
Software Mentions: 2
Published: over 11 years ago

10.1186/s12864-017-3650-5

Comparative and functional genomics of the Lactococcus lactis taxon; insights into evolution and niche adaptation
Cited by: 75
Author(s): Philip Kelleher, Francesca Bottacini, Jennifer Mahony, Kieran N. Kilcawley, Douwe van Sinderen
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-017-4220-6

An Arabidopsis introgression zone studied at high spatio-temporal resolution: interglacial and multiple genetic contact exemplified using whole nuclear and plastid genomes
Cited by: 22
Author(s): Nora Hohmann, Marcus A. Koch
Software Mentions: 2
Published: about 9 years ago

10.3390/genes12081249

Proof of Gene Doping in a Mouse Model with a Human Erythropoietin Gene Transferred Using an Adenoviral Vector
Cited by: 7
Author(s): Takehito Sugasawa, Takuro Nakano, Shin‐ichiro Fujita, Yuki Matsumoto, Genki Ishihara, Kai Aoki, Koki Yanazawa, S. Ono, Shinsuke Tamai, Lev Manevich, Hiroshi Ueda, Noriyo Ishibashi, Kenshirou Tamai, Yasuharu Kanki, Yasuko Yoshida, Koichi Watanabe, Tohru Takemasa, Yasushi Kawakami, Kazuhiro Takekoshi
Software Mentions: 2
Published: about 5 years ago

10.1016/j.molcel.2019.10.002

R-Loops Promote Antisense Transcription across the Mammalian Genome
Cited by: 97
Author(s): Sue Mei Tan-Wong, Somdutta Dhir, Nick J. Proudfoot
Software Mentions: 2
Published: about 7 years ago

10.3390/genes12091388

A Recurrent De Novo Terminal Duplication of 14q32 in Korean Siblings Associated with Developmental Delay and Intellectual Disability, Growth Retardation, Facial Dysmorphism, and Cerebral Infarction: A Case Report and Literature Review
Cited by: 2
Author(s): Ji Yoon Han, Joonhong Park
Software Mentions: 2
Published: about 5 years ago

10.18632/genesandcancer.113

Pathway analysis of bladder cancer genome-wide association study identifies novel pathways involved in bladder cancer development
Cited by: 12
Author(s): Meng Chen, Nathaniel Rothman, Yuanqing Ye, Jian Gu, Paul Scheet, Maosheng Huang, David W. Chang, Colin P.N. Dinney, Debra T. Silverman, Jonine D. Figueroa, Stephen J. Chanock, Xifeng Wu
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0150768

High Throughput Sequencing Identifies Misregulated Genes in the Drosophila Polypyrimidine Tract-Binding Protein (hephaestus) Mutant Defective in Spermatogenesis
Cited by: 4
Author(s): Vinod Sridharan, Joseph Heimiller, Mark D. Robida, Ravinder Singh
Software Mentions: 2
Published: over 10 years ago

10.1186/s12872-018-0867-4

Whole-exome sequencing identifies R1279X of MYH6 gene to be associated with congenital heart disease
Cited by: 16
Author(s): Ehsan Razmara, Masoud Garshasbi
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0098635

Gene Expression Profiling Analysis of Bisphenol A-Induced Perturbation in Biological Processes in ER-Negative HEK293 Cells
Cited by: 20
Author(s): Rong Yin, Liang Gu, Min Li, Cizhong Jiang, Tongcheng Cao, Xiaobai Zhang
Software Mentions: 2
Published: over 12 years ago

10.1002/dvg.22963

Transcriptional regulation of the proto‐oncogeneZfp521by SPI1 (PU.1) and HOXC13
Cited by: 11
Author(s): Ming Yu, Salma Aldallal, Latifa Al‐Haj, Shiraj Panjwani, Akina S. McCartney, Sarah Edwards, Pooja Manjunath, Catherine Walker, Alexander Awgulewitsch, Kathryn E. Hentges
Software Mentions: 2
Published: about 10 years ago

10.3390/jof7080600

Transcription Factors in the Fungus Aspergillus nidulans: Markers of Genetic Innovation, Network Rewiring and Conflict between Genomics and Transcriptomics
Cited by: 6
Author(s): Oier Etxebeste
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-015-1737-4

Cell periphery-related proteins as major genomic targets behind the adaptive evolution of an industrial Saccharomyces cerevisiae strain to combined heat and hydrolysate stress
Cited by: 22
Author(s): Valeria Wallace-Salinas, Daniel P. Brink, Dag Ahrén, Marie-Françoise Gorwa-Grauslund
Software Mentions: 2
Published: over 11 years ago

10.1186/s12711-020-0528-9

pCADD: SNV prioritisation in Sus scrofa
Cited by: 16
Author(s): Christian Groß, Martijn F.L. Derks, Hendrik Jan Megens, Mirte Bosse, M.A.M. Groenen, Marcel J. T. Reinders, Dick de Ridder
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijerph14040345

Genomic Evidence for Bacterial Determinants Influencing Obesity Development
Cited by: 16
Author(s): Raphael D. Isokpehi, Shaneka S. Simmons, Matilda Johnson, Marinelle Payton
Software Mentions: 1
Published: over 9 years ago

10.1038/onc.2014.421

FOXA1 repression is associated with loss of BRCA1 and increased promoter methylation and chromatin silencing in breast cancer
Cited by: 31
Author(s): Chun Gong, Keiji Fujino, Lara J. Monteiro, Ana Gomes, Rinske Drost, Hazel Davidson‐Smith, Satoru Takeda, Ui‐Soon Khoo, Jos Jonkers, Duncan Sproul, Eric W.‐F. Lam
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41388-020-01606-3

Comparative analysis of the AIB1 interactome in breast cancer reveals MTA2 as a repressive partner which silences E-Cadherin to promote EMT and associates with a pro-metastatic phenotype
Cited by: 8
Author(s): Damir Varešlija, Elspeth Ward, Siobhan Purcell, Nicola Cosgrove, Sinéad Cocchiglia, Philip J O'Halloran, Sara Charmsaz, Fiona T. Bane, Francesca Brett, Michael Farrell, Jane Cryan, Alan Beausang, Lance Hudson, Arran K Turnbul, J. M. Dixon, Arnold D. Hill, Nolan Priedigkeit, Steffi Oesterreich, Adrian V. Lee, Andrew H. Sims, Aisling M. Redmond, Jason S. Carroll, Leonie S. Young
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41388-021-01899-y

MUC1-C activates the PBAF chromatin remodeling complex in integrating redox balance with progression of human prostate cancer stem cells
Cited by: 31
Author(s): Masaru Hagiwara, Atsushi Fushimi, Nami Yamashita, Atrayee Bhattacharya, Hasan Rajabi, Mark D. Long, Yota Yasumizu, Mototsugu Oya, Song Liu, Donald Küfe
Software Mentions: 1
Published: over 5 years ago

10.1673/031.009.1801

The Insect Chemoreceptor Superfamily inDrosophila pseudoobscura: Molecular Evolution of Ecologically-Relevant Genes Over 25 Million Years
Cited by: 16
Author(s): Hugh M. Robertson
Software Mentions: 1
Published: over 17 years ago

10.1515/jib-2021-0001

Novel perspectives for SARS-CoV-2 genome browsing
Cited by: 2
Author(s): Visam Gültekin, Jens Allmer
Software Mentions: 1
Published: over 5 years ago

10.1194/jlr.M062497

miR-146a-5p inhibits TNF-α-induced adipogenesis via targeting insulin receptor in primary porcine adipocytes
Cited by: 36
Author(s): Di Wu, Qianyun Xi, Xiao Cheng, Tao Dong, Xiaotong Zhu, Gang Shu, Lina Wang, Qingyan Jiang, Yongliang Zhang
Software Mentions: 1
Published: over 10 years ago

10.1155/2013/517943

Association of RXR-Gamma Gene Variants with Familial Combined Hyperlipidemia: Genotype and Haplotype Analysis
Cited by: 17
Author(s): Federica Sentinelli, Ilenia Minicocci, Anna Mestice, Luisa Nanni, Stefano Romeo, Michela Incani, Maria Gisella Cavallo, Andrea Lenzi, Marcello Arca, Marco Giorgio Baroni
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13256-018-1608-0

Novel compound heterozygote mutations in the ATP7B gene in an Iranian family with Wilson disease: a case report
Cited by: 8
Author(s): Omid Daneshjoo, Masoud Garshasbi
Software Mentions: 1
Published: over 8 years ago

10.1007/s12031-018-1044-z

The Regulation of Monoamine Oxidase A Gene Expression by Distinct Variable Number Tandem Repeats
Cited by: 19
Author(s): Maurizio Manca, Veridiana Pessoa, Ana Illera Lopez, Patrick T. Harrison, Fábio Miyajima, Helen Sharp, Andrew Pickles, Jonathan Hill, Chris Murgatroyd, Vivien J. Bubb, John P. Quinn
Software Mentions: 1
Published: over 8 years ago

10.18502/jovr.v15i2.6730

Screening for Novel LOX and SOD1 Variants in Keratoconus Patients from Brazil
Cited by: 8
Author(s): Diego Nery Benevides Gadelha, Alex Felipe Barbosa Feitosa, Rafaela Gomes da Silva, Luana Talita Antunes, Matheus Cavalcanti Muniz, Matheus Alencar de Oliveira, Dáfine de Oliveira Andrade, Nathalia Mayanna da Paz Silva, Sebastião Cronemberger, Bruno Luiz Fonseca Schamber-Reis
Software Mentions: 1
Published: over 6 years ago

10.1016/j.isci.2019.10.055

Deciphering the Gene Regulatory Landscape Encoded in DNA Biophysical Features
Cited by: 7
Author(s): Abhijeet Pataskar, Willem Vanderlinden, Johannes Friedrich Emmerig, Aditi Singh, Jan Lipfert, Vijay Tiwari
Software Mentions: 1
Published: about 7 years ago

10.1186/s13048-021-00834-9

p38β - MAPK11 and its role in female cancers
Cited by: 11
Author(s): Periklis Katopodis, Rachel Kerslake, Athanasios Zikopoulos, Nefeli Eirini Beri, Vladimir Anikin
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.7715

P300 acetyltransferase regulates fatty acid synthase expression, lipid metabolism and prostate cancer growth
Cited by: 41
Author(s): Xiaokun Gang, Yinhui Yang, Jian Zhong, Kui Jiang, Yunqian Pan, Jeffrey Karnes, Jun Zhang, Wanhai Xu, Guixia Wang, Haojie Huang
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.7937

Tumor-promoting function and prognostic significance of the RNA-binding protein T-cell intracellular antigen-1 in esophageal squamous cell carcinoma
Cited by: 17
Author(s): Junichi Hamada, Katsutoshi Shoda, Kiyoshi Masuda, Yuji Fujita, Takuya Naruto, Tomohiro Kohmoto, Yuko Miyakami, Miki Watanabe, Yasusei Kudo, Hitoshi Fujiwara, Daisuke Ichikawa, Eigo Otsuji, Issei Imoto
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.7764

Associations between polymorphisms of long non-coding RNA MEG3 and risk of colorectal cancer in Chinese
Cited by: 53
Author(s): Xin Cao, Shulin Zhuang, Yong Hu, Xi Liu, Lichun Deng, Sheng Huaming, Weisheng Shen
Software Mentions: 1
Published: over 10 years ago

10.18632/oncotarget.11324

The cytokine-cosmc signaling axis upregulates the tumor-associated carbohydrate antigen Tn
Cited by: 4
Author(s): Chia Wen Ho, Chia‐Hua Lin, Yi Wei Liaw, Hsiao Ling Chiang, Yu Tang Chin, Rui Huang, Hung Cheng Lai, Yaw Wen Hsu, Po Jan Kuo, Chiao-En Chen, Hung Yun Lin, Jacqueline Whang‐Peng, Shin Nieh, Earl Fu, Leroy F. Liu, Jaulang Hwang
Software Mentions: 1
Published: about 10 years ago

10.18632/oncotarget.13746

An annotated list of bivalent chromatin regions in human ES cells: a new tool for cancer epigenetic research
Cited by: 41
Author(s): Franck Court, Philippe Arnaud
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.13720

Design and implementation of a mobile system for lung cancer patient follow-up in China and initial report of the ongoing patient registry
Cited by: 10
Author(s): Xiangyun Ye, Wei Hua Jia, Ziming Li, Xiaomin Niu, Jiemin Wang, Yunqin Chen, Zong-Ming Guo, Shun Lü
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.15571

Predictive analysis of long non-coding RNA expression profiles in diffuse large B-cell lymphoma
Cited by: 19
Author(s): Dan-Xia Zhu, Cheng Fang, Xiaodong Li, Yiting Geng, Ruiqi Li, Chen Wu, Jingting Jiang, Changping Wu
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.15478

NOMO-1 gene is deleted in early-onset colorectal cancer
Cited by: 16
Author(s): José Perea, Juan Luis Garcı́a, Javier Bajo Pérez, Daniel Rueda, María Arriba, Yolanda Rodríguez, Miguel Urioste, Rogelio González-Sarmiento
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.15695

Immunocompetent mouse allograft models for development of therapies to target breast cancer metastasis
Cited by: 72
Author(s): Yuan Yang, Howard H. Yang, Ying Hu, Peter H. Watson, Huaitian Liu, Thomas Geiger, Miriam R. Anver, Diana C. Haines, Philip Martin, Jeffrey E. Green, Maxwell P. Lee, Kent W. Hunter, Lalage M. Wakefield
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.17399

Clinically significant sub-clonality for common drivers can be detected in 26% of KRAS/EGFR mutated lung adenocarcinomas
Cited by: 4
Author(s): Einav Simon, Tova Bick, Shada Sarji, Talia Shentzer, Elad Prinz, Liza Yehiam, Edmond Sabo, Ofer Ben‐Izhak, Dov Hershkovitz
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.14175

Expression analysis of microRNA as prognostic biomarkers in colorectal cancer
Cited by: 46
Author(s): Jie Yang, Dongling Ma, Andrew Fesler, Haiyan Zhai, Apisri Leamniramit, Wenzhe Li, Song Wu, Jingfang Ju
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.17826

C1orf64 is a novel androgen receptor target gene and coregulator that interacts with 14-3-3 protein in breast cancer
Cited by: 11
Author(s): Ali Naderi
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.17740

TUBB3 overexpression has a negligible effect on the sensitivity to taxol in cultured cell lines
Cited by: 17
Author(s): Mihoko A. Tame, Anna G. Manjón, Daria Belokhvostova, Jonne A. Raaijmakers, René H. Medema
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.20340

LINC00461, a long non-coding RNA, is important for the proliferation and migration of glioma cells
Cited by: 35
Author(s): Yong Yang, Mingxin Ren, Song Chen, Dan Li, Shahid Hussain Soomro, Yajie Xiong, Hongfeng Zhang, Hui Fu
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.21272

MicroRNA-212/ABCG2-axis contributes to development of imatinib-resistance in leukemic cells
Cited by: 19
Author(s): Meike Kaehler, Johanna Ruemenapp, Daniel Gonnermann, Inga Nagel, Oliver Bruhn, Sierk Haenisch, Ole Ammerpohl, Daniela Wesch, Ingolf Cascorbi, Henrike Bruckmueller
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.20115

Long non-coding RNA polymorphisms in 6p21.1 are associated with atrophic gastritis risk and gastric cancer prognosis
Cited by: 9
Author(s): Zhi Lv, Liping Sun, Qian Xu, Yuehua Gong, Jingjing Jing, Chengzhong Xing, Yuan Yuan
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.21469

Deregulated c-Myc requires a functional HSF1 for experimental and human hepatocarcinogenesis
Cited by: 15
Author(s): Antonio Cigliano, Maria G. Pilo, Lei Li, Gavinella Latte, Marta Szydlowska, Maria M. Simile, Panagiotis Paliogiannis, Li Che, Giovanni Mario Pes, Giuseppe Palmieri, Maria Cristina Sini, Antonio Cossu, Alberto Porcu, Gianpaolo Vidili, Maria A. Seddaiu, Rosa M. Pascale, Silvia Ribback, Frank Dombrowski, Xin Chen, Diego F. Calvisi
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.22245

Loss of p53-inducible long non-coding RNA LINC01021 increases chemosensitivity
Cited by: 13
Author(s): Markus Kaller, Ursula Götz, Heiko Hermeking
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.22630

Identification of potential genetic causal variants for rheumatoid arthritis by whole-exome sequencing
Cited by: 19
Author(s): Ying Liu, Elaine Lai‐Han Leung, Hudan Pan, Xiaojun Yao, Qingchun Huang, Min Wu, Ting Xu, Yuwei Wang, Jun Cai, Runze Li, Wei Liu, Liang Liu
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.23643

Zinc finger protein 598 inhibits cell survival by promoting UV-induced apoptosis
Cited by: 2
Author(s): Qinghua Yang, Romi Gupta
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.25940

A novel molecular mechanism for a long non-coding RNA PCAT92 implicated in prostate cancer
Cited by: 5
Author(s): Pushpinder Bawa, Samathmika Ravi, Swagatika Paul, Bibha Chaudhary, Subhashini Srinivasan
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.27152

Safety evaluation of conditionally immortalized cells for renal replacement therapy
Cited by: 5
Author(s): Milos Mihajlovic, Sam Hariri, Koen C.G. Westphal, Manoe J. Janssen, Miriam J Oost, Laura Bongiovanni, Lambertus P. van den Heuvel, Alain de Bruin, Luuk B. Hilbrands, Rosalinde Masereeuw
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.28037

Diverse transcriptional regulation and functional effects revealed by CRISPR/Cas9-directed epigenetic editing
Cited by: 3
Author(s): Miguel Vizoso, Jacco van Rheenen
Software Mentions: 1
Published: about 5 years ago

10.3390/jpm11060468

Association of LINC00673 Genetic Variants with Progression of Oral Cancer
Cited by: 15
Author(s): Shih‐Chi Su, Chiao‐Wen Lin, Po‐Chung Ju, Lun‐Ching Chang, Chun‐Yi Chuang, Yu-Fan Liu, Ming‐Ju Hsieh
Software Mentions: 1
Published: over 5 years ago

10.3390/jpm11030231

The Epidemiology and Genetics of Hyperuricemia and Gout across Major Racial Groups: A Literature Review and Population Genetics Secondary Database Analysis
Cited by: 45
Author(s): Faven Butler, Ali Alghubayshi, Youssef M Roman
Software Mentions: 1
Published: over 5 years ago

10.1186/s40101-018-0169-7

Association of EGLN1 genetic polymorphisms with SpO2 responses to acute hypobaric hypoxia in a Japanese cohort
Cited by: 13
Author(s): Yoshiki Yasukochi, Takayuki Nishimura, Midori Motoi, Shigeki Watanuki
Software Mentions: 1
Published: over 8 years ago

10.1098/rsob.120054

Transcriptome sequencing of black grouse ( Tetrao tetrix ) for immune gene discovery and microsatellite development
Cited by: 26
Author(s): Biao Wang, Robert Ekblom, Todd A. Castoe, Eleanor P. Jones, Radoslav Kozma, Erik Bongcam‐Rudloff, David D. Pollock, Jacob Höglund
Software Mentions: 1
Published: over 14 years ago

10.1098/rsob.180131

DNA methylation subpatterns at distinct regulatory regions in human early embryos
Cited by: 15
Author(s): Rongsong Luo, Chunling Bai, Lei Yang, Zhong Zheng, Guanghua Su, Guang Gao, Zhuying Wei, Yongchun Zuo, Guangpeng Li
Software Mentions: 1
Published: about 8 years ago

10.2174/1874192401711010084

Interpreting the Mechanism of APOE (p.Leu167del) Mutation in the Incidence of Familial Hypercholesterolemia; An In-silico Approach
Cited by: 11
Author(s): Omran M. Rashidi, Fatima Amanullah H.Nazar, Mohamed Nabil Alama, Zuhier Awan
Software Mentions: 1
Published: about 9 years ago

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