Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: bam

https://packages.ecosyste.ms/registries/pypi.org/packages/bam

Text snippets on the command line.
1 version
Latest release: about 1 year ago

Papers Mentioning bam 10

10.1186/s13072-021-00390-y

Molecular and computational approaches to map regulatory elements in 3D chromatin structure
Cited by: 7
Author(s): Beoung Hun Lee, Suhn Kyong Rhie
Software Mentions: 21
Published: over 3 years ago

Hierarchical generalized additive models in ecology: an introduction with mgcv
Cited by: 443
Author(s): Eric J. Pedersen, David L. Miller, Gavin L. Simpson, Noam Ross
Software Mentions: 15
Published: over 5 years ago

10.1186/s12942-017-0097-5

Estimating the prevalence of 26 health-related indicators at neighbourhood level in the Netherlands using structured additive regression
Cited by: 18
Author(s): Jan van de Kassteele, Laurens Zwakhals, Oscar Breugelmans, Caroline Ameling, Carolien van den Brink
Software Mentions: 12
Published: over 7 years ago

10.1186/s12859-020-03846-2

ARPIR: automatic RNA-Seq pipelines with interactive report
Cited by: 10
Author(s): Giulio Spinozzi, Valentina Tini, Alessia Adorni, Brunangelo Falini, Maria Paola Martelli
Software Mentions: 11
Published: almost 4 years ago

10.1186/s12920-020-0668-3

AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting
Cited by: 3
Author(s): Christian Wünsch, Henrik Banck, Carsten Müller‐Tidow, Martin Dugas
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0246473

The forests of the midwestern United States at Euro-American settlement: Spatial and physical structure based on contemporaneous survey data
Cited by: 6
Author(s): Paciorek Cj, Charles V. Cogbill, Jody A. Peters, John W. Williams, David J. Mladenoff, Andria Dawson, J. S. McLachlan
Software Mentions: 4
Published: over 3 years ago

10.1093/gigascience/giz060

BSA4Yeast: Web-based quantitative trait locus linkage analysis and bulk segregant analysis of yeast sequencing data
Cited by: 3
Author(s): Zhang Zhi, Paul P. Jung, Valentin Grouès, Patrick May, Carole L. Linster, Enrico Glaab
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-018-4503-6

RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data
Cited by: 41
Author(s): Qian Zhou, Xiaoquan Su, Gongchao Jing, Songlin Chen, Kang Ning
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0188510

High-throughput full-length single-cell mRNA-seq of rare cells
Cited by: 6
Author(s): Chin Chun Ooi, Gary L. Mantalas, Winston Koh, Norma Neff, Teruaki Fuchigami, Dawson J. Wong, Robert Wilson, Seung Min Park, Sanjiv S. Gambhir, Stephen R. Quake, Shan X. Wang
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.ppat.1007489

LANA oligomeric architecture is essential for KSHV nuclear body formation and viral genome maintenance during latency
Cited by: 26
Author(s): Alessandra De Leo, Zhong Deng, Olga Vladimirova, Horng-Shen Chen, Jayaraju Dheekollu, Abram Calderon, Kenneth A. Myers, James Hayden, Frederick Keeney, Benedikt B. Kaufer, Yan Yuan, Erle S. Robertson, Paul M. Lieberman
Software Mentions: 1
Published: almost 6 years ago