pypi: and | Projects | Ecosyste.ms: Papers

10.7554/eLife.63003

Short-term exposure to intermittent hypoxia leads to changes in gene expression seen in chronic pulmonary disease
Cited by: 17
Author(s): Gang Wu, Yin Yeng Lee, Evelyn M. Gulla, Andrew Potter, Joseph A. Kitzmiller, Marc D. Ruben, Nathan Salomonis, JA Whitsett, Lauren J. Francey, John B. Hogenesch, Smith Dl
Software Mentions: 12
Published: almost 4 years ago

10.3389/fgene.2021.687778

Pan-Cancer Analysis of PIMREG as a Biomarker for the Prognostic and Immunological Role
Cited by: 16
Author(s): Hua Zhu, Xinyao Hu, Yingze Ye, Zhihong Jian, Yi Zhong, Lijuan Gu, Xiaoxing Xiong
Software Mentions: 12
Published: about 3 years ago

10.3389/fvets.2021.627894

Factors Affecting the Development of Bovine Respiratory Disease: A Cross-Sectional Study in Beef Steers Shipped From France to Italy
Cited by: 14
Author(s): Barbara Padalino, Francesco Cirone, Martina Zappaterra, Daniele Tullio, Gigliola Ficco, Antonio Giustino, Linda Amarachi Ndiana, Annamaria Pratelli
Software Mentions: 9
Published: over 3 years ago

10.1534/g3.116.038190

Adapting Genotyping-by-Sequencing for Rice F2 Populations
Cited by: 65
Author(s): Tomohisa Furuta, Motoyuki Ashikari, Kshirod K. Jena, Kouki Doi, Stefan Reuscher
Software Mentions: 7
Published: over 7 years ago

10.1093/gigascience/giab058

Scalable analysis of multi-modal biomedical data
Cited by: 3
Author(s): Jaclyn Smith, Yao Shi, Michael Benedikt, Miloš Nikolić
Software Mentions: 6
Published: about 3 years ago

10.1186/s13071-020-04265-1

Molecular analysis of polymorphic species of the genus Marshallagia (Nematoda: Ostertagiinae)
Cited by: 9
Author(s): Abdurakhim Kuchboev, Khanifakhon Sobirova, R. Karimova, Oybek Amirov, Georg von Samson‐Himmelstjerna, Jürgen Krücken
Software Mentions: 6
Published: over 4 years ago

10.1186/s12879-015-0786-2

Identification of circulating biomarkers in sera of Plasmodium knowlesi-infected malaria patients – comparison against Plasmodium vivax infection
Cited by: 15
Author(s): Yeng Chen, Choon Kit Chan, Jesinda P Kerishnan, Yee Ling Lau, Yin-Ling Irene Wong, Subash C. B. Gopinath
Software Mentions: 6
Published: almost 10 years ago

10.1371/journal.pone.0200390

Molecular marker sequences of cattle Cooperia species identify Cooperia spatulata as a morphotype of Cooperia punctata
Cited by: 18
Author(s): Sabrina Ramünke, Fernando de Almeida Borges, Elke von Son-de Fernex, Georg von Samson‐Himmelstjerna, Jürgen Krücken
Software Mentions: 6
Published: over 6 years ago

10.3389/fphar.2018.00084

Proteomic Analysis of Combined Gemcitabine and Birinapant in Pancreatic Cancer Cells
Cited by: 15
Author(s): Xu Zhu, Xiaomeng Shen, Jun Qu, Robert M. Straubinger, William J. Jusko
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0016266

Whole Transcriptome Sequencing Reveals Gene Expression and Splicing Differences in Brain Regions Affected by Alzheimer's Disease
Cited by: 257
Author(s): Natalie A. Twine, Karolina Janitz, Marc R. Wilkins, Michał Janitz
Software Mentions: 5
Published: almost 14 years ago

10.1371/journal.pone.0191006

A census of P. longum’s phytochemicals and their network pharmacological evaluation for identifying novel drug-like molecules against various diseases, with a special focus on neurological disorders
Cited by: 33
Author(s): Neha Choudhary, Vikram Singh
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0189159

Transcriptomic profiles in peripheral blood between women with unexplained recurrent implantation failure and recurrent miscarriage and the correlation with endometrium: A pilot study
Cited by: 11
Author(s): Jin Huang, Nana Jin, Hao Qin, Xiao Shi, Yingyu Liu, Wing-Ching Cheung, Chi Chiu Wang, Ting‐Fung Chan, Tin‐Chiu Li
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0109012

Identification of Host-Immune Response Protein Candidates in the Sera of Human Oral Squamous Cell Carcinoma Patients
Cited by: 32
Author(s): Yeng Chen, Siti Nuraishah Azman, Jesinda P Kerishnan, Rosnah Binti Zain, Yu Nieng Chen, Yin-Ling Irene Wong, Subash C. B. Gopinath
Software Mentions: 5
Published: about 10 years ago

10.3390/nu12051484

The Effects of Aronia melanocarpa Juice Consumption on the mRNA Expression Profile in Peripheral Blood Mononuclear Cells in Subjects at Cardiovascular Risk
Cited by: 3
Author(s): Ljiljana Stojković, Ivan Jovanović, Maja Živković, Manja Zec, Tamara Djurić, Jovana Kuveljić, Ana Kolaković, Ivana Kolić, A. Djordjevic, Marija Glibetić, Dragan Alavantić, Aleksandra Stanković
Software Mentions: 5
Published: over 4 years ago

10.3389/fcell.2021.719192

PARP1 Inhibitor Combined With Oxaliplatin Efficiently Suppresses Oxaliplatin Resistance in Gastric Cancer-Derived Organoids via Homologous Recombination and the Base Excision Repair Pathway
Cited by: 1
Author(s): Huafu Li, Chunming Wang, Linxiang Lan, Wenhui Wu, Ian M. Evans, E Josue Ruiz, Le-Ping Yan, Zhijun Zhou, Joaquím M. Oliveira, Rui L. Reis, Zhenran Hu, Wei Chen, Axel Behrens, Yulong He, Changhua Zhang
Software Mentions: 5
Published: about 3 years ago

10.1186/s12863-015-0313-x

Filtering genetic variants and placing informative priors based on putative biological function
Cited by: 4
Author(s): Stefanie Friedrichs, Dörthe Malzahn, Elizabeth Pugh, Marcio Almeida, Xiao Qing Liu, Julia N. Bailey
Software Mentions: 5
Published: almost 9 years ago

10.3389/fimmu.2020.01089

IL-12 Signaling Contributes to the Reprogramming of Neonatal CD8+ T Cells
Cited by: 4
Author(s): Darely Y. Gutiérrez-Reyna, Alejandra Cedillo-Baños, Linda A Kempis-Calanis, Oscar Ramírez-Pliego, Lisa Bargier, Denis Puthier, José David Abad Flores, Morgane Thomas‐Chollier, Denis Thieffry, Alejandra Medina-Rivera, Salvatore Spicuglia, María Angélica Santana
Software Mentions: 4
Published: over 4 years ago

10.1001/jamanetworkopen.2021.14723

Performance of a Machine Learning Algorithm Using Electronic Health Record Data to Identify and Estimate Survival in a Longitudinal Cohort of Patients With Lung Cancer
Cited by: 43
Author(s): Qian Yuan, Tianrun Cai, Chuan Hong, Mulong Du, Bruce E. Johnson, Michael Lanuti, Tianxi Cai, David C. Christiani
Software Mentions: 4
Published: over 3 years ago

10.1038/s41419-021-04057-0

TRAIP modulates the IGFBP3/AKT pathway to enhance the invasion and proliferation of osteosarcoma by promoting KANK1 degradation
Cited by: 14
Author(s): Mi Li, Wei Wu, Sisi Deng, Zengwu Shao, Xin Jin
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0226548

Extending the use of the World Health Organisations’ water sanitation and hygiene assessment tool for surveys in hospitals – from WASH-FIT to WASH-FAST
Cited by: 12
Author(s): Michuki Maina, Olga Tosas-Auguet, Jacob McKnight, Mathias Zosi, Grace Kimemia, Paul Mwaniki, Arabella Hayter, Margaret Montgomery, Constance Schultsz, Mike English
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0210431

Assessment of complementarity of WGCNA and NERI results for identification of modules associated to schizophrenia spectrum disorders
Cited by: 20
Author(s): Arthur Sant’Anna Feltrin, Ana Carolina Tahira, Sérgio Nery Simões, Helena Brentani, David Martins
Software Mentions: 4
Published: almost 6 years ago

10.1016/j.csbj.2020.05.001

Rewired functional regulatory networks among miRNA isoforms (isomiRs) from let-7 and miR-10 gene families in cancer
Cited by: 11
Author(s): Tingming Liang, Leng Han, Li Guo
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12348-018-0156-5

Discovery of tear biomarkers in children with chronic non-infectious anterior uveitis: a pilot study
Cited by: 30
Author(s): Sheila T. Angeles‐Han, Steven Yeh, Purnima Patel, Duc M. Duong, Kirsten Jenkins, Kelly Rouster‐Stevens, Mekibib Altaye, Ndate Fall, Sherry Thornton, Sampath Prahalad, Gary N. Holland
Software Mentions: 4
Published: about 6 years ago

10.1038/s41419-021-03649-0

Maheshvara regulates JAK/STAT signaling by interacting and stabilizing hopscotch transcripts which leads to apoptosis in Drosophila melanogaster
Cited by: 0
Author(s): Bhawana Maurya, Satya Surabhi, Rituparna Das, Pranjali Pandey, Ashim Mukherjee, Mousumi Mutsuddi
Software Mentions: 4
Published: over 3 years ago

10.1186/s12864-015-2277-7

Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome
Cited by: 42
Author(s): Erik A. Visser, Jill L. Wegrzyn, Emma T. Steenkmap, Alexander Andrew Myburg, Sanushka Naidoo
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13054-020-03418-z

Role of extracorporeal membrane oxygenation in children with sepsis: a systematic review and meta-analysis
Cited by: 15
Author(s): Kollengode Ramanathan, Nicholas Eng Meng Yeo, Peta Alexander, Lakshmi Raman, Ryan P. Barbaro, Chuen Seng Tan, Luregn J. Schlapbach, Graeme MacLaren
Software Mentions: 4
Published: almost 4 years ago

10.1515/jib-2020-0005

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
Cited by: 17
Author(s): Dagmar Waltemath, Martin Golebiewski, Michael L. Blinov, Padraig Gleeson, Henning Hermjakob, Michael Hucka, Esther Thea Inau, Sarah M. Keating, Matthias König, Olga Krebs, Rahuman S. Malik Sheriff, David Nickerson, Ernst Oberortner, Herbert M. Sauro, Falk Schreiber, Lucian P. Smith, Melanie I. Stefan, Ulrike Wittig, Chris J. Myers
Software Mentions: 4
Published: over 4 years ago

10.3390/biomedicines9030266

Dysbiosis and Enhanced Beta-Defensin Production in Hair Follicles of Patients with Lichen Planopilaris and Frontal Fibrosing Alopecia
Cited by: 6
Author(s): Andria Constantinou, Katarzyna Polak-Witka, Marios Tomazou, Anastasis Oulas, Varvara Kanti, Rolf Schwarzer, Johannes Helmuth, Anke Edelmann, Ulrike Blume-Peytavi, George M. Spyrou, Annika Vogt
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0245370

Determinants of the intensity of uremic pruritus in patients receiving maintenance hemodialysis: A cross-sectional study
Cited by: 11
Author(s): Jian-Hui Zhao, Qiqi Zhu, Yiwen Li, Lili Wang
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pmed.1001907

The HIV Treatment Gap: Estimates of the Financial Resources Needed versus Available for Scale-Up of Antiretroviral Therapy in 97 Countries from 2015 to 2020
Cited by: 46
Author(s): Arin Dutta, Catherine Barker, Ashley Kallarakal
Software Mentions: 4
Published: almost 9 years ago

10.3389/fnmol.2018.00178

Stable STIM1 Knockdown in Self-Renewing Human Neural Precursors Promotes Premature Neural Differentiation
Cited by: 21
Author(s): Renjitha Gopurappilly, Bipan Kumar Deb, Pragnya Chakraborty, Gaiti Hasan
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pntd.0007103

Reprogramming of Trypanosoma cruzi metabolism triggered by parasite interaction with the host cell extracellular matrix
Cited by: 23
Author(s): Eliciane Cevolani Mattos, Gisele André Baptista Canuto, Nubia Carolina Manchola, Rubens Daniel Miserani Magalhães, Thomas W. M. Crozier, Douglas J. Lamont, Marina Franco Maggi Tavares, Walter Colli, Michael A. J. Ferguson, Maria Júlia M. Alves
Software Mentions: 4
Published: almost 6 years ago

10.3389/fmicb.2016.01342

Leisingera sp. JC1, a Bacterial Isolate from Hawaiian Bobtail Squid Eggs, Produces Indigoidine and Differentially Inhibits Vibrios
Cited by: 55
Author(s): Samantha M. Gromek, Andrea M. Suria, Matthew S. Fullmer, Jillian L. Garcia, J. Peter Gogarten, Spencer V. Nyholm, Marcy J. Balunas
Software Mentions: 3
Published: about 8 years ago

10.1186/s12989-016-0115-y

An acetyl-L-carnitine switch on mitochondrial dysfunction and rescue in the metabolomics study on aluminum oxide nanoparticles
Cited by: 39
Author(s): Xiaobo Li, Chengcheng Zhang, Xin Zhang, Shizhi Wang, Qingtao Meng, Shenshen Wu, Hongbao Yang, Yankai Xia, Rui Chen
Software Mentions: 3
Published: almost 9 years ago

10.1186/cc12742

Anti-vascular endothelial growth factor antibody attenuates inflammation and decreases mortality in an experimental model of severe sepsis
Cited by: 52
Author(s): Su Jin Jeong, Sang Hoon Han, Chang Oh Kim, Jun Yong Choi, June Myung Kim
Software Mentions: 3
Published: almost 12 years ago

10.1038/s41598-018-29865-x

EPO does not promote interaction between the erythropoietin and beta-common receptors
Cited by: 18
Author(s): Karen S. Cheung Tung Shing, Sophie E. Broughton, Tracy L. Nero, Kevin R. Gillinder, Melissa Ilsley, Hayley S. Ramshaw, Angel F. Lopez, Michael D. W. Griffin, Michael W. Parker, Andrew C. Perkins, Urmi Dhagat
Software Mentions: 3
Published: over 6 years ago

10.1186/2041-1480-6-3

Implementation of linked data in the life sciences at BioHackathon 2011
Cited by: 15
Author(s): Kiyoko F. Aoki‐Kinoshita, Akira R. Kinjo, Mizuki Morita, Yoshinobu Igarashi, Yi An Chen, Yasumasa Shigemoto, Takatomo Fujisawa, Yukie Akune, Takeo Katoda, Anna Kokubu, Mori Takaaki, Mitsuteru Nakao, Seiichiro Kawashima, Shinobu Okamoto, Toshiaki Katayama, Soichi Ogishima
Software Mentions: 3
Published: almost 10 years ago

10.1186/s13012-019-0920-4

Implementation effectiveness of health interventions for indigenous communities: a systematic review
Cited by: 38
Author(s): Truely Harding, John Oetzel
Software Mentions: 3
Published: over 5 years ago

10.1186/s12889-020-10007-w

Spatial-temporal patterns of malaria incidence in Uganda using HMIS data from 2015 to 2019
Cited by: 26
Author(s): Simon P. Kigozi, Ruth Kigozi, Catherine M Sebuguzi, Jorge Cano, Damian Rutazaana, Jimmy Opigo, Teun Bousema, Adoke Yeka, Anne Gasasira, Benn Sartorius, Rachel L. Pullan
Software Mentions: 3
Published: almost 4 years ago

10.1186/1471-2164-13-346

Integrative analysis of single nucleotide polymorphisms and gene expression efficiently distinguishes samples from closely related ethnic populations
Cited by: 11
Author(s): Hsin-Chou Yang, Peili Wang, Chien‐Wei Lin, Chien-Hsiun Chen, Chun-Houh Chen
Software Mentions: 3
Published: almost 13 years ago

10.1186/s40478-020-00982-x

C9orf72-associated SMCR8 protein binds in the ubiquitin pathway and with proteins linked with neurological disease
Cited by: 15
Author(s): John Goodier, Alisha O. Soares, Gavin Pereira, Lauren DeVine, Laura Sánchez, Robert N. Cole, José L. García‐Pérez
Software Mentions: 3
Published: over 4 years ago

10.1097/MD.0000000000021748

Acupuncture improves postoperative symptoms of pigmented villonodular synovitis
Cited by: 0
Author(s): Hua Tang, Huaying Fan, Fei Luo, Li Huang, Shichuan Liao, Wenjing Yu, Yunbei Chen, Jiao Chen, Xuefei Qin
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0010141

Sequencing and Genetic Variation of Multidrug Resistance Plasmids in Klebsiella pneumoniae
Cited by: 43
Author(s): Fangqing Zhao, Jie Bai, Jinyu Wu, Jing Liu, Ming‐Ming Zhou, Shilin Xia, Shanjin Wang, Xiaoding Yao, Huiguang Yi, Meili Lin, Shengjie Gao, Tieli Zhou, Zitong Xu, Yuxin Niu, Qiyu Bao
Software Mentions: 3
Published: over 14 years ago

10.1371/journal.pone.0245932

Simulation code for estimating external gamma-ray doses from a radioactive plume and contaminated ground using a local-scale atmospheric dispersion model
Cited by: 1
Author(s): Daiki Satoh, Hiromasa Nakayama, Takuya Furuta, Tamotsu Yoshihiro, Kensaku Sakamoto
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0207362

Feasibility of CT radiomics to predict treatment response of individual liver metastases in esophagogastric cancer patients
Cited by: 29
Author(s): Remy Klaassen, Ruben T. H. M. Larue, Banafsche Mearadji, Stephanie O. van der Woude, Jaap Stoker, Philippe Lambin, Hanneke W. M. van Laarhoven
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0232947

Comparative efficacy of antibiotic(s) alone or in combination of corticosteroids in adults with acute bacterial meningitis: A systematic review and network meta-analysis
Cited by: 7
Author(s): Ajaree Rayanakorn, Hooi‐Leng Ser, Priyia Pusparajah, Kok‐Gan Chan, Bey Hing Goh, Tahir Mehmood Khan, Surasak Saokaew, Shaun Wen Huey Lee, Learn‐Han Lee
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0217118

Optimizing the intrinsic parallel diffusivity in NODDI: An extensive empirical evaluation
Cited by: 64
Author(s): José M. Guerrero, Nagesh Adluru, Barbara B. Bendlin, H. Hill Goldsmith, Stacey M. Schaefer, Richard J. Davidson, Steven Kecskemeti, Hui Zhang, Andrew L. Alexander
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.65921

Single-cell transcriptomics defines heterogeneity of epicardial cells and fibroblasts within the infarcted murine heart
Cited by: 40
Author(s): Julia Hesse, Christoph Owenier, Tobias Lautwein, Ria Zalfen, Jonas F Weber, Zhaoping Ding, Christina Alter, Alexander Lang, Maria Grandoch, Norbert Gerdes, Jens W. Fischer, Gunnar W. Klau, Christoph Dieterich, Karl Köhrer, Jürgen Schrader
Software Mentions: 3
Published: over 3 years ago

10.2196/mhealth.7136

A User-Centered Approach: Understanding Client and Caregiver Needs and Preferences in the Development of mHealth Apps for Self-Management
Cited by: 55
Author(s): Roxanna Bendixen, Andrea D. Fairman, Meredith Karavolis, Carly Sullivan, Bambang Parmanto
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0251712

Ultrasound-guided dynamic needle tip positioning technique for radial artery cannulation in elderly patients: A prospective randomized controlled study
Cited by: 10
Author(s): Soo Yeon Kim, Kyu Nam Kim, Mi Ae Jeong, Bong Soo Lee, Hyun Woo Lim
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pntd.0004570

Down-Regulation of TLR and JAK/STAT Pathway Genes Is Associated with Diffuse Cutaneous Leishmaniasis: A Gene Expression Analysis in NK Cells from Patients Infected with Leishmania mexicana
Cited by: 27
Author(s): Edith A. Fernández-Figueroa, Iván Imaz-Rosshandler, Juan Castillo-Fernandez, Haydee Miranda-Ortíz, Juan Carlos Fernández-López, Ingeborg Becker, Claudia Rangel‐Escareño
Software Mentions: 3
Published: over 8 years ago

10.2196/19219

Evaluation of the Sexual Health Behaviors of Black Male Adolescents and Young Adults Through Social Media Platforms: Web-Based Survey Study
Cited by: 2
Author(s): Jade Burns, Keith Johnstone, Tanaka Chavanduka, Cornelius Jamison, Valery Pena, Rob Stephenson, Lynae A. Darbes
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-019-48013-7

Characterization of cellular transcriptomic signatures induced by different respiratory viruses in human reconstituted airway epithelia
Cited by: 29
Author(s): Claire Nicolas de Lamballerie, Andrés Pizzorno, Julia Dubois, Thomas Julien, Blandine Padey, Mendy Bouveret, Aurélien Traversier, Catherine Legras-Lachuer, Bruno Lina, Guy Boivin, Benjamin Terrier, Manuel Rosa‐Calatrava
Software Mentions: 3
Published: over 5 years ago

10.1121/1.5079636

Development and validation of a spectro-temporal processing test for cochlear-implant listeners
Cited by: 24
Author(s): Alan Archer-Boyd, Rosy Southwell, John M. Deeks, Richard E. Turner, Robert P. Carlyon
Software Mentions: 3
Published: about 6 years ago

10.1038/s41598-020-68578-y

Usefulness of three-dimensional printing of superior mesenteric vessels in right hemicolon cancer surgery
Cited by: 17
Author(s): Yigang Chen, Linjie Bian, Hong Zhou, Danping Wu, Jie Xu, Cheng Gu, Xiang Fan, Zhequn Liu, Junyi Zou, Jiazeng Xia, Zekuan Xu
Software Mentions: 3
Published: over 4 years ago

10.5808/GI.2019.17.4.e41

Review of statistical methods for survival analysis using genomic data
Cited by: 40
Author(s): Seungyeoun Lee, Heeju Lim
Software Mentions: 3
Published: almost 5 years ago

10.3389/fpsyt.2019.00691

Abnormal Alpha Rhythm During Self-Referential Processing in Schizophrenia Patients
Cited by: 9
Author(s): Shikui Jia, Miaomiao Liu, Pei-Wen Huang, Yanli Zhao, Shuping Tan, Ritsu Go, Tianyi Yan, Jinglong Wu
Software Mentions: 3
Published: about 5 years ago

10.1534/g3.113.008185

Genome of Drosophila suzukii, the Spotted Wing Drosophila
Cited by: 116
Author(s): Joanna C. Chiu, Xuanting Jiang, Li Zhao, Christopher A. Hamm, Julie M. Cridland, Perot Saelao, Kelly A. Hamby, Ernest K. Lee, Rosanna S. Kwok, Guojie Zhang, Frank G. Zalom, Vaughn M. Walton, David J. Begun
Software Mentions: 3
Published: almost 11 years ago

10.1038/s41598-020-79634-y

Southward spreading of the Changjiang Diluted Water in the La Niña spring of 2008
Cited by: 6
Author(s): Chen‐Tung Arthur Chen, Yan Bai, Ting-Hsuan Huang, Xianqiang He, Hsien-Wen Chen, Shujie Yu
Software Mentions: 3
Published: almost 4 years ago

10.3389/fonc.2020.00026

Development of a Novel Six-miRNA-Based Model to Predict Overall Survival Among Colon Adenocarcinoma Patients
Cited by: 10
Author(s): Zhen-xiang Rong, Yi Rong, Yingru Li, Lei Zhang, Jingwen Peng, Baojia Zou, Nan Zhou, Zihao Pan
Software Mentions: 3
Published: over 4 years ago

10.1186/s12859-016-1145-z

GCORE-sib: An efficient gene-gene interaction tool for genome-wide association studies based on discordant sib pairs
Cited by: 2
Author(s): Pei-Yuan Sung, Yiting Wang, Chao A. Hsiung, Ren‐Hua Chung
Software Mentions: 3
Published: over 8 years ago

10.3390/biology10080732

Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case
Cited by: 10
Author(s): Benjamin Istace, Caroline Belser, Cyril Falentin, Karine Labadie, Franz Boideau, Gwenaëlle Deniot, Loeiz Maillet, Corinne Cruaud, Laurie Bertrand, Anne‐Marie Chèvre, Patrick Wincker, Mathieu Rousseau‐Gueutin, Jean‐Marc Aury
Software Mentions: 3
Published: over 3 years ago

10.3389/fgene.2015.00285

A survey about methods dedicated to epistasis detection
Cited by: 103
Author(s): Clément Niel, Christine Sinoquet, Christian Dina, Ghislain Rocheleau
Software Mentions: 3
Published: about 9 years ago

10.3389/fpls.2021.702442

Wood Anatomy of Douglas-Fir in Eastern Arizona and Its Relationship With Pacific Basin Climate
Cited by: 6
Author(s): Daniel Balanzategui, Henry Nordhauß, Ingo Heinrich, Franco Biondi, Nicholas Miley, Alexander Hurley, Emanuele Ziaco
Software Mentions: 3
Published: about 3 years ago

10.1155/2020/8857238

Clinical Effects of Mercury in Conservative Dentistry: A Systematic Review, Meta-Analysis, and Trial Sequential Analysis of Randomized Controlled Trials
Cited by: 5
Author(s): Romeo Patini, Gianrico Spagnuolo, Federica Guglielmi, Edoardo Staderini, Mariarosaria Simeone, Andrea Camodeca, Patrizia Gallenzi
Software Mentions: 3
Published: over 4 years ago

10.1186/s13000-018-0736-6

HtrA1 expression and the prognosis of high-grade serous ovarian carcinoma: a cohort study using digital analysis
Cited by: 5
Author(s): Andréanne Gagné, Bernard Têtu, Michèle Orain, Stéphane Turcotte, Marie Plante, Jean Grégoire, Marie-Claude Renaud, Isabelle Bairati, Dominique Trudel
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2105-14-338

MetSizeR: selecting the optimal sample size for metabolomic studies using an analysis based approach
Cited by: 77
Author(s): Gift Nyamundanda, Isobel Claire Gormley, Yue Fan, William M. Gallagher, Lorraine Brennan
Software Mentions: 2
Published: about 11 years ago

10.1186/s13000-015-0294-0

Comparison of digital image analysis and visual scoring of KI-67 in prostate cancer prognosis after prostatectomy
Cited by: 22
Author(s): Patrice Desmeules, Hélène Hovington, Molière Nguilé-Makao, Caroline Léger, André Caron, Louis Lacombe, Yves Fradet, Bernard Têtu, Vincent Fradet
Software Mentions: 2
Published: over 9 years ago

10.1186/s12877-019-1395-5

Correlation between the Charlson comorbidity index and skeletal muscle mass/physical performance in hospitalized older people potentially suffering from sarcopenia
Cited by: 29
Author(s): Ge Gong, Wenhui Wan, Xinghu Zhang, Yu Liu, Xinhui Liu, Jian Yin
Software Mentions: 2
Published: almost 5 years ago

10.1186/1746-6148-9-122

Microarray gene expression profiling of neural tissues in bovine spastic paresis
Cited by: 7
Author(s): Lorraine Pariset, Silvia Bongiorni, Susana Bueno, Cesare Ernesto Maria Gruber, Gianluca Prosperini, Giovanni Chillemi, Silvia Bicorgna, Arcangelo Gentile, Alessio Valentini
Software Mentions: 2
Published: over 11 years ago

10.1590/1980-57642018dn12-030003

Validity and reliability of the Brazilian Portuguese version of the Australian National University - Alzheimer’s Disease Risk Index (ANU-ADRI)
Cited by: 5
Author(s): Marcus Kiiti Borges, Alessandro Ferrari Jacinto, Vanessa de Albuquerque Cítero
Software Mentions: 2
Published: about 6 years ago

10.1289/ehp.1408971

Extreme Precipitation and Emergency Room Visits for Gastrointestinal Illness in Areas with and without Combined Sewer Systems: An Analysis of Massachusetts Data, 2003–2007
Cited by: 66
Author(s): Jyotsna S. Jagai, Quan‐Lin Li, Shiliang Wang, Kyle P. Messier, Timothy J. Wade, Elizabeth D. Hilborn
Software Mentions: 2
Published: about 9 years ago

10.1186/s13223-020-00466-6

The effect of electronic monitoring combined with weekly feedback and reminders on adherence to inhaled corticosteroids in infants and younger children with asthma: a randomized controlled trial
Cited by: 9
Author(s): Jiande Chen, Juan Xu, Liebin Zhao, Jing Zhang, Yong Yin, Fen Zhang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12889-018-5805-y

Complex multiple risk intervention to promote healthy behaviours in people between 45 to 75 years attended in primary health care (EIRA study): study protocol for a hybrid trial
Cited by: 9
Author(s): Edurne Zabaleta‐del‐Olmo, Haizea Pombo, Mariona Pons‐Vigués, Marc Casajuana-Closas, Enriqueta Pujol‐Ribera, Tomàs López-Jiménez, Carmen Cabezas, Carme Martín-Borràs, Antoni Serrano‐Blanco, María Rubio-Valera, Joan Llobera, Alfonso Leiva, Catalina Vicens, Clara Vidal, Manuel Campiñez, Remedios Martín-Álvarez, José-Ángel Maderuelo, José-Ignacio Recio, Luis García‐Ortiz, Emma Motrico, Juan-Ángel Bellón, Patrícia Moreno-Peral, Carlos Martín-Cantera, Antonio Fontán, Susana Aldecoa-Landesa, Rosa Magallón-Botaya, Bonaventura Bolíbar
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-015-1880-y

Large scale RNAi screen in Tribolium reveals novel target genes for pest control and the proteasome as prime target
Cited by: 108
Author(s): Julia Ulrich, Van Anh Dao, Upalparna Majumdar, Christian Schmitt-Engel, Jonas Schwirz, Dorothea Schultheis, Nadi Ströhlein, Nicole Troelenberg, Daniela Großmann, Tobias Richter, Jürgen Dönitz, Lizzy Gerischer, Gérard Leboulle, Andreas Vilcinskas, Mario Stanke, Gregor Bucher
Software Mentions: 2
Published: about 9 years ago

10.1186/s13054-019-2427-4

Comparative efficacy of vasoactive medications in patients with septic shock: a network meta-analysis of randomized controlled trials
Cited by: 27
Author(s): Chuanyong Lu, Jing Yan, Sileny Han, Qiuhua Chen, Mingqi Chen, Hua Jiang, Jun Lü
Software Mentions: 2
Published: over 5 years ago

10.1093/database/baaa034

A strategy for large-scale comparison of evolutionary- and reaction-based classifications of enzyme function
Cited by: 3
Author(s): Gemma L. Holliday, Shoshana D. Brown, David Mischel, Benjamin J. Polacco, Patricia C. Babbitt
Software Mentions: 2
Published: almost 5 years ago

10.1017/S0950268820000679

Prevalence of Coxiella burnetii in German sheep flocks and evaluation of a novel approach to detect an infection via preputial swabs at herd-level
Cited by: 9
Author(s): Annika Wolf, T. Prüfer, Clara Schoneberg, Amely Campe, Martin Runge, Martin Ganter, B. Bauer
Software Mentions: 2
Published: almost 5 years ago

10.1111/acel.12849

JNK modifies neuronal metabolism to promote proteostasis and longevity
Cited by: 17
Author(s): Lifen Wang, Sonnet S. Davis, Martin Borch Jensen, Imilce A. Rodriguez‐Fernandez, Cagsar Apaydin, Gábor Juhász, Bradford W. Gibson, Birgit Schilling, Arvind Ramanathan, Sina Ghaemmaghami, Heinrich Jasper
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0077303

An Integrated Approach Based on Multiplexed Protein Array and iTRAQ Labeling for In-Depth Identification of Pathways Associated to IVF Outcome
Cited by: 19
Author(s): Valeria Severino, Livia Malorni, Anna Emilia Cicatiello, Vittoria D’Esposito, Salvatore Longobardi, Nicola Colacurci, Nadia Miraglia, Nicola Sannolo, Annarita Farina, Angela Chambery
Software Mentions: 2
Published: about 11 years ago

10.1038/s42003-021-01930-8

MED15 prion-like domain forms a coiled-coil responsible for its amyloid conversion and propagation
Cited by: 12
Author(s): Cristina Batlle, Isabel Calvo, Valentín Iglesias, Cian J. Lynch, Marcos Gil-García, Manuel Serrano, Salvador Ventura
Software Mentions: 2
Published: over 3 years ago

10.1186/s12889-021-10345-3

Study protocol: developing and evaluating an interactive web platform to teach children hunting, shooting and firearms safety: a randomized controlled trial
Cited by: 3
Author(s): David C. Schwebel, D. Leann Long, Marissa A. Gowey, Joan Severson, Yefei He, Katelyn Trullinger
Software Mentions: 2
Published: almost 4 years ago

10.1186/1471-2164-15-390

In silico analyses reveal common cellular pathways affected by loss of heterozygosity (LOH) events in the lymphomagenesis of Non-Hodgkin’s lymphoma (NHL)
Cited by: 7
Author(s): Carlos Aya-Bonilla, Emily T. Camilleri, Larisa M. Haupt, Rodney Arthur Lea, Maher K. Gandhi, Lyn R. Griffiths
Software Mentions: 2
Published: over 10 years ago

10.1097/MD.0000000000026864

Nonpharmacological interventions for cancer-related fatigue in lung cancer patients
Cited by: 5
Author(s): Lingyan Zhao, Ping Shi, Xiaomin Xiong, Jia Zeng
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0207247

Biomechanics of the peafowl’s crest reveals frequencies tuned to social displays
Cited by: 14
Author(s): Suzanne Amador Kane, Daniel Van Beveren, Roslyn Dakin
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0179054

A behavioral typology of opioid overdose risk behaviors among recent veterans in New York City
Cited by: 13
Author(s): Alex S. Bennett, Andrew Golub, Luther Elliott
Software Mentions: 2
Published: over 7 years ago

10.1155/2020/5053914

Deciphering the Active Compounds and Mechanisms of Qixuehe Capsule on Qi Stagnation and Blood Stasis Syndrome: A Network Pharmacology Study
Cited by: 1
Author(s): Yu‐Ning Huang, Ding‐Qiao Xu, Shi‐Jun Yue, Yanyan Chen, Hui-Juan Tao, Ruonong Fu, Li-Ming Xing, Taiyi Wang, Yuxian Ma, Baoan Wang, Yuping Tang, Jin‐Ao Duan
Software Mentions: 2
Published: over 4 years ago

10.1186/s12870-017-1040-4

The development and use of a molecular model for soybean maturity groups
Cited by: 38
Author(s): Tiffany Langewisch, Julián M. Lenis, Guo Liang Jiang, Dechun Wang, Vincent R. Pantalone, Kristin Bilyeu
Software Mentions: 2
Published: over 7 years ago

10.1097/MD.0000000000023731

Hemostasis after percutaneous transfemoral access
Cited by: 1
Author(s): Rejane Reich, Lucas Helal, Vanessa Monteiro Mantovani, Eneida Rejane Rabelo‐Silva
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12904-019-0449-y

Expressive writing as a therapeutic intervention for people with advanced disease: a systematic review
Cited by: 18
Author(s): Nuriye Kupeli, Georgia Chatzitheodorou, Nicholas A. Troop, Daisy McInnerney, Patrick Stone, Bridget Candy
Software Mentions: 2
Published: over 5 years ago

10.1097/MD.0000000000026916

Relative contribution of vitamin D deficiency to subclinical atherosclerosis in Indian context
Cited by: 0
Author(s): Srinivas Mantha, Sudha Lakshmi Tripuraneni, Lee A. Fleisher, Michael F. Roizen, Venkat Ramana Rao Mantha, Prasada Rao Dasari
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0243958

How medical education survives and evolves during COVID-19: Our experience and future direction
Cited by: 76
Author(s): Ju Whi Kim, Sun Jung Myung, Hyun Bae Yoon, Sang Hui Moon, Hyunjin Ryu, Jae Joon Yim
Software Mentions: 2
Published: almost 4 years ago

10.1097/MD.0000000000024590

Efficacy and safety of Shen-Ling-Bai-Zhu-San combined with chemotherapy for lung cancer
Cited by: 2
Author(s): Jiawang Jiang, Zhiming Li, Fenghao Zhang, Huaiyu Li, Renliang Li, Qianjie Qiu, Baoguo Chen
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0172335

Elevated OPRD1 promoter methylation in Alzheimer’s disease patients
Cited by: 19
Author(s): Huihui Ji, Yunliang Wang, Guili Liu, Lan Chang, Zhongming Chen, Dongsheng Zhou, Xuting Xu, Wei Cui, Qingxiao Hong, Liting Jiang, Jinfeng Li, Xiaohui Zhou, Ying Liu, Zhiping Guo, Qin Zha, Yanfang Niu, Qiuyan Weng, Shiwei Duan, Qinwen Wang
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0195841

Estimating parametric phenotypes that determine anthesis date in Zea mays: Challenges in combining ecophysiological models with genetics
Cited by: 16
Author(s): Abhishes Lamsal, Stephen M. Welch, Jeffrey W. White, Kelly R. Thorp, Nora M. Bello
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0245202

Is skin disinfection before subcutaneous injection necessary? The reasoning of Certified Nurses in Infection Control in Japan
Cited by: 2
Author(s): Yuko Yoshida, Risa Takashima, Rika Yano
Software Mentions: 2
Published: almost 4 years ago

10.1097/MD.0000000000023198

Adjuvant therapeutic effects of moxibustion on COVID-19
Cited by: 2
Author(s): Zhilei Wang, Juan Zhang, Dongqing Du, Fengjun Ma, Yan Xiao, Chen Chen, Yanhui Ma
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0137592

Biomarkers of Host Response Predict Primary End-Point Radiological Pneumonia in Tanzanian Children with Clinical Pneumonia: A Prospective Cohort Study
Cited by: 34
Author(s): Laura K. Erdman, Valérie D’Acremont, Kyla Hayford, Nimerta Rajwans, Mary Kilowoko, Esther Kyungu, Philipina Hongoa, Leonor Alamo, David L. Streiner, Blaise Genton, Kevin C. Kain
Software Mentions: 2
Published: about 9 years ago

10.1186/s12872-019-1234-9

Dynamic predictive accuracy of electrocardiographic biomarkers of sudden cardiac death within a survival framework: the Atherosclerosis Risk in Communities (ARIC) study
Cited by: 20
Author(s): Erick Andres Perez Alday, Aron Bender, David German, Srini Mukundan, Christopher Hamilton, J. A. C. Thomas, Yin Li‐Pershing, Larisa G. Tereshchenko
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0169314

Gene Expression Profiling in Slow-Type Calf Soleus Muscle of 30 Days Space-Flown Mice
Cited by: 51
Author(s): Guido Gambara, Michele Salanova, Stefano Ciciliot, Sandra Furlan, Martina Gutsmann, Gudrun Schiffl, Ute Ungethuem, Pompeo Volpe, Hanns‐Christian Gunga, Dieter Blottner
Software Mentions: 2
Published: almost 8 years ago

Projects: pypi: and

Papers Mentioning and 418